Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435340 | XP_003603733.1 | 97.668 | 386 | 9 | 0 | 1 | 386 | 1 | 386 | 0.0 | 787 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435340 | sp|Q0J0A4|LPAAT_ORYSJ | 82.787 | 366 | 62 | 1 | 22 | 386 | 49 | 414 | 0.0 | 653 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435340 | G7J4P3 | 97.668 | 386 | 9 | 0 | 1 | 386 | 1 | 386 | 0.0 | 787 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0435340 | Msa1171060 | 0.807628 | 4.606356e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435340 | MtrunA17_Chr3g0142281 | 97.668 | 386 | 9 | 0 | 1 | 386 | 1 | 386 | 0.0 | 787 |
| Msa0435340 | MtrunA17_Chr1g0155871 | 83.425 | 362 | 56 | 1 | 25 | 386 | 35 | 392 | 0.0 | 648 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435340 | AT4G24160.1 | 81.522 | 368 | 66 | 2 | 18 | 383 | 48 | 415 | 0.0 | 639 |
| Msa0435340 | AT4G24160.2 | 83.624 | 287 | 46 | 1 | 18 | 303 | 48 | 334 | 0.0 | 511 |
Find 113 sgRNAs with CRISPR-Local
Find 323 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATGTACAACACTTAATTT+TGG | 0.224490 | 3_2:-88474938 | Msa0435340:CDS |
| ACTGACCTTGAGCGCGTATT+TGG | 0.229778 | 3_2:+88475067 | None:intergenic |
| CCTACGCTTGTTATGGTTCA+TGG | 0.238094 | 3_2:-88475499 | Msa0435340:CDS |
| AGGTTCCATGTGAAATTATC+AGG | 0.270422 | 3_2:-88472251 | Msa0435340:CDS |
| TTAGTAACAAACTCAGTCTT+TGG | 0.271154 | 3_2:+88474883 | None:intergenic |
| ATACTGCTTGGACATTCTTT+TGG | 0.272412 | 3_2:-88475104 | Msa0435340:CDS |
| GTGGCAGAGGTTTAGGTCCT+TGG | 0.277706 | 3_2:-88473625 | Msa0435340:intron |
| GAGCCGTTCTGAACCATCTA+TGG | 0.283949 | 3_2:-88474840 | Msa0435340:CDS |
| AATTAGTACTTACTTGATAA+TGG | 0.284189 | 3_2:+88475722 | None:intergenic |
| AATTAAATTATTAGTTTAAT+CGG | 0.285997 | 3_2:+88475920 | None:intergenic |
| TAATAATTTAATTTGATCAT+AGG | 0.286027 | 3_2:-88475910 | Msa0435340:five_prime_UTR |
| ATCAATAATATTGACTTGTT+GGG | 0.297983 | 3_2:-88471880 | Msa0435340:three_prime_UTR |
| TGCATTTGTGGCAGAGGTTT+AGG | 0.300561 | 3_2:-88473632 | Msa0435340:intron |
| TGGCAGAGGTTTAGGTCCTT+GGG | 0.303425 | 3_2:-88473624 | Msa0435340:intron |
| TCATATGCTTGCGAGCTTCT+TGG | 0.307279 | 3_2:+88472274 | None:intergenic |
| TCATGGATACGCTGCTTCTC+AGG | 0.312153 | 3_2:-88475482 | Msa0435340:CDS |
| CTTCGAAATCTAAAAGCTTC+TGG | 0.316718 | 3_2:-88475809 | Msa0435340:CDS |
| TCATATATGGTTACGAAGAT+TGG | 0.317405 | 3_2:-88472314 | Msa0435340:CDS |
| CATATGCTTGCGAGCTTCTT+GGG | 0.332927 | 3_2:+88472275 | None:intergenic |
| TTTAATTTGATCATAGGAAT+AGG | 0.335011 | 3_2:-88475904 | Msa0435340:five_prime_UTR |
| GTATATTTGCGGACCATGTT+AGG | 0.357715 | 3_2:+88473599 | None:intergenic |
| TAAAATTAGATTCCCATAGA+TGG | 0.360134 | 3_2:+88474827 | None:intergenic |
| AAGGTTTCTTACCCCAAATT+CGG | 0.374235 | 3_2:-88472071 | Msa0435340:CDS |
| TGATTCTCCTACGCTTGTTA+TGG | 0.377711 | 3_2:-88475506 | Msa0435340:CDS |
| TATCAATAATATTGACTTGT+TGG | 0.380434 | 3_2:-88471881 | Msa0435340:three_prime_UTR |
| GAGAAAACGTGGTTCATTAC+TGG | 0.383415 | 3_2:+88475555 | None:intergenic |
| GTGCCCACCACATTCATATA+TGG | 0.386094 | 3_2:-88472327 | Msa0435340:CDS |
| ATAACAAGCGTAGGAGAATC+AGG | 0.396588 | 3_2:+88475508 | None:intergenic |
| GTTCAAGAGCGTGTTAATAT+AGG | 0.397338 | 3_2:-88475619 | Msa0435340:CDS |
| TAAGCAGACGATAGCCCTTC+GGG | 0.404316 | 3_2:+88472034 | None:intergenic |
| ATTAAGTGTTGTACATGCTC+AGG | 0.405149 | 3_2:+88474943 | None:intergenic |
| ACACAGCTCCCCACTAGCTT+TGG | 0.405889 | 3_2:+88473399 | None:intergenic |
| ATGTCCAAGCAGTATGAAAT+TGG | 0.409418 | 3_2:+88475112 | None:intergenic |
| AGGTTTGGTACACATTCAAC+CGG | 0.416717 | 3_2:-88473569 | Msa0435340:CDS |
| CTCAGTAAAGTGGAATATAC+TGG | 0.418224 | 3_2:-88471922 | Msa0435340:three_prime_UTR |
| ACCTAGCACTTGTATATTTG+CGG | 0.422424 | 3_2:+88473588 | None:intergenic |
| GAGCGTGTTAATATAGGTTC+TGG | 0.437567 | 3_2:-88475613 | Msa0435340:CDS |
| CTAGGATGCCCCTTCTTCAA+AGG | 0.443647 | 3_2:-88473345 | Msa0435340:intron |
| GAGGAATCAAGTCTGCTAAC+TGG | 0.445927 | 3_2:-88473530 | Msa0435340:intron |
| CTCCTGGCTCTAAAGTTAGA+TGG | 0.450780 | 3_2:-88475588 | Msa0435340:CDS |
| GCTTCTGGTCTTCACTCCGT+TGG | 0.462666 | 3_2:-88475794 | Msa0435340:CDS |
| CTGACCAATTTCATACTGCT+TGG | 0.468352 | 3_2:-88475116 | Msa0435340:CDS |
| CTAAGCAGACGATAGCCCTT+CGG | 0.468701 | 3_2:+88472033 | None:intergenic |
| AATATAGGTTCTGGTCCTCC+TGG | 0.478496 | 3_2:-88475604 | Msa0435340:CDS |
| GTCAATGAACACAAAATGTC+CGG | 0.479554 | 3_2:+88472135 | None:intergenic |
| TGAAATTATCAGGGTCCCTC+AGG | 0.480922 | 3_2:-88472241 | Msa0435340:intron |
| GATTGCCAAACCTTTGAAGA+AGG | 0.482203 | 3_2:+88473335 | None:intergenic |
| CAAAACATATATATAATGAA+TGG | 0.484430 | 3_2:-88475977 | Msa0435340:five_prime_UTR |
| AGGTCCTTGGGGTCCTAACA+TGG | 0.493507 | 3_2:-88473612 | Msa0435340:CDS |
| CGAAGGGCTATCGTCTGCTT+AGG | 0.496103 | 3_2:-88472032 | Msa0435340:exon |
| TTTGGATTGTCAGCGTTGGT+TGG | 0.499785 | 3_2:-88476032 | None:intergenic |
| TTGCATTTGGAGCATTTGCT+AGG | 0.504415 | 3_2:-88473363 | Msa0435340:CDS |
| ATCATTGCTGTTGATCAACT+TGG | 0.506443 | 3_2:-88475415 | Msa0435340:CDS |
| TGTCTTGTTTCTCAGTAAAG+TGG | 0.506697 | 3_2:-88471932 | Msa0435340:three_prime_UTR |
| AAATATACAAGTGCTAGGTT+TGG | 0.514674 | 3_2:-88473584 | Msa0435340:CDS |
| GTTTCTTCTGTAAACCCGGC+AGG | 0.515353 | 3_2:+88474910 | None:intergenic |
| CTTACTTGATAATGGAAAGA+AGG | 0.518770 | 3_2:+88475730 | None:intergenic |
| CATGGATACGCTGCTTCTCA+GGG | 0.521168 | 3_2:-88475481 | Msa0435340:CDS |
| GTGGTGGGCACTTTCCACTC+TGG | 0.523249 | 3_2:+88472339 | None:intergenic |
| AGATTATGTTTATCATACAT+TGG | 0.527652 | 3_2:-88473425 | Msa0435340:CDS |
| CAGCTGAATGGAAGCCACTT+GGG | 0.528872 | 3_2:+88472110 | None:intergenic |
| AAGCATAAAACACAGCTGAA+TGG | 0.533305 | 3_2:+88472098 | None:intergenic |
| TCAATAATATTGACTTGTTG+GGG | 0.533712 | 3_2:-88471879 | Msa0435340:three_prime_UTR |
| ACAGCTGAATGGAAGCCACT+TGG | 0.534128 | 3_2:+88472109 | None:intergenic |
| ATCTGTTTCTTCTGTAAACC+CGG | 0.536750 | 3_2:+88474906 | None:intergenic |
| TTCACATGTAAAAGTACTGA+AGG | 0.544682 | 3_2:-88475280 | Msa0435340:intron |
| ATTGCCAAACCTTTGAAGAA+GGG | 0.549575 | 3_2:+88473336 | None:intergenic |
| CATTGGCGGCCAAAGCTAGT+GGG | 0.553970 | 3_2:-88473408 | Msa0435340:CDS |
| AACCATCTAACTTTAGAGCC+AGG | 0.557305 | 3_2:+88475586 | None:intergenic |
| AGAAGCTCGCAAGCATATGA+AGG | 0.558147 | 3_2:-88472271 | Msa0435340:CDS |
| GTGGTTCATTACTGGTTGAA+CGG | 0.564216 | 3_2:+88475563 | None:intergenic |
| GGCAGAGGTTTAGGTCCTTG+GGG | 0.564857 | 3_2:-88473623 | Msa0435340:intron |
| ACATTGGCGGCCAAAGCTAG+TGG | 0.568091 | 3_2:-88473409 | Msa0435340:CDS |
| ATGATATGATCGGTTGAAGT+GGG | 0.570401 | 3_2:+88475768 | None:intergenic |
| GCAGTTTGGATTGTCAGCGT+TGG | 0.572814 | 3_2:-88476036 | None:intergenic |
| TTGCCAAACCTTTGAAGAAG+GGG | 0.577063 | 3_2:+88473337 | None:intergenic |
| GAAAATGAATCTCTTCCCGA+AGG | 0.579910 | 3_2:-88472049 | Msa0435340:CDS |
| AAGTTTCGAGCAACATGGAA+GGG | 0.587783 | 3_2:-88474862 | Msa0435340:CDS |
| AGCCGTTCTGAACCATCTAT+GGG | 0.595543 | 3_2:-88474839 | Msa0435340:CDS |
| TAAGTTTCGAGCAACATGGA+AGG | 0.597296 | 3_2:-88474863 | Msa0435340:CDS |
| TGCTTCCAAATACGCGCTCA+AGG | 0.600744 | 3_2:-88475072 | Msa0435340:intron |
| TTATGTTTATCATACATTGG+CGG | 0.606664 | 3_2:-88473422 | Msa0435340:CDS |
| TTAAGTGTTGTACATGCTCA+GGG | 0.606900 | 3_2:+88474944 | None:intergenic |
| GATGATATGATCGGTTGAAG+TGG | 0.613666 | 3_2:+88475767 | None:intergenic |
| ATCTTGCAGAAACTGAGGCA+TGG | 0.614755 | 3_2:-88475178 | Msa0435340:intron |
| ATCATAGGAATAGGATAGCG+TGG | 0.615245 | 3_2:-88475895 | Msa0435340:five_prime_UTR |
| TTCGTAACCATATATGAATG+TGG | 0.615369 | 3_2:+88472320 | None:intergenic |
| CTCAGCGGCGATGATATGAT+CGG | 0.621828 | 3_2:+88475758 | None:intergenic |
| CCATGAACCATAACAAGCGT+AGG | 0.627502 | 3_2:+88475499 | None:intergenic |
| TAACCATATATGAATGTGGT+GGG | 0.627519 | 3_2:+88472324 | None:intergenic |
| TCATTGCTGTTGATCAACTT+GGG | 0.634448 | 3_2:-88475414 | Msa0435340:intron |
| GTGTTCATTGACAACCCAAG+TGG | 0.634463 | 3_2:-88472124 | Msa0435340:CDS |
| TTTCTTGCAGTGCTCCAGAG+TGG | 0.634871 | 3_2:-88472353 | Msa0435340:intron |
| ATTGGCGGCCAAAGCTAGTG+GGG | 0.638338 | 3_2:-88473407 | Msa0435340:CDS |
| GGTTCCATGTGAAATTATCA+GGG | 0.643857 | 3_2:-88472250 | Msa0435340:CDS |
| CTTTACTGAGAAACAAGACA+CGG | 0.644730 | 3_2:+88471935 | None:intergenic |
| TCCGCAAATATACAAGTGCT+AGG | 0.645840 | 3_2:-88473589 | Msa0435340:CDS |
| CGGACCATGTTAGGACCCCA+AGG | 0.646328 | 3_2:+88473608 | None:intergenic |
| AAAATGAATCTCTTCCCGAA+GGG | 0.646555 | 3_2:-88472048 | Msa0435340:CDS |
| AGCAATGATTCTGAAACGAG+AGG | 0.649538 | 3_2:+88475429 | None:intergenic |
| TTACTAAGTTTCGAGCAACA+TGG | 0.649865 | 3_2:-88474867 | Msa0435340:CDS |
| GGAAAGAAGGCGTTTCTCAG+CGG | 0.650667 | 3_2:+88475743 | None:intergenic |
| ATAACAATATTAATATACAC+AGG | 0.654140 | 3_2:+88471991 | None:intergenic |
| GTAACCATATATGAATGTGG+TGG | 0.658814 | 3_2:+88472323 | None:intergenic |
| TGTTGATCTTGCAGAAACTG+AGG | 0.661163 | 3_2:-88475183 | Msa0435340:intron |
| ATTAGACAAAACGACGACGT+CGG | 0.664772 | 3_2:-88475837 | Msa0435340:CDS |
| TTCCCATAGATGGTTCAGAA+CGG | 0.677131 | 3_2:+88474837 | None:intergenic |
| CGGTTGAAGTGGGAATCCAA+CGG | 0.678476 | 3_2:+88475778 | None:intergenic |
| GAAGATTGGATGAATTACGA+AGG | 0.684343 | 3_2:-88472300 | Msa0435340:CDS |
| GTAACAGTGTTGAGAAAACG+TGG | 0.691173 | 3_2:+88475544 | None:intergenic |
| GGTTTGGTACACATTCAACC+GGG | 0.692249 | 3_2:-88473568 | Msa0435340:CDS |
| GGGACCCTGATAATTTCACA+TGG | 0.704694 | 3_2:+88472246 | None:intergenic |
| CATCTAACTTTAGAGCCAGG+AGG | 0.752922 | 3_2:+88475589 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATAATTTAATTTGATCAT+AGG | - | chr3_2:88471961-88471980 | Msa0435340:three_prime_UTR | 10.0% |
| !! | AATTTAAATAAATAGGTAAA+CGG | + | chr3_2:88472664-88472683 | None:intergenic | 10.0% |
| !! | AAATTACAAATACATATTAA+AGG | + | chr3_2:88473478-88473497 | None:intergenic | 10.0% |
| !!! | TTAAAATATATTTTTGCATT+TGG | - | chr3_2:88474495-88474514 | Msa0435340:intron | 10.0% |
| !!! | TTTTTGATGATAAAAATATA+GGG | + | chr3_2:88475215-88475234 | None:intergenic | 10.0% |
| !!! | TTTTTTGATGATAAAAATAT+AGG | + | chr3_2:88475216-88475235 | None:intergenic | 10.0% |
| !! | CAAAACATATATATAATGAA+TGG | - | chr3_2:88471894-88471913 | Msa0435340:three_prime_UTR | 15.0% |
| !! | ACAACGAAATTTAAATAAAT+AGG | + | chr3_2:88472671-88472690 | None:intergenic | 15.0% |
| !!! | ACAATTTTCTGTTATTATAT+TGG | - | chr3_2:88473216-88473235 | Msa0435340:intron | 15.0% |
| !! | TAATAACAATAAAAAGTGAT+TGG | + | chr3_2:88473865-88473884 | None:intergenic | 15.0% |
| !! | TTATTACTCAAATCAAATAT+GGG | - | chr3_2:88473879-88473898 | Msa0435340:intron | 15.0% |
| !! | ACAAAATAATATAACAATGT+TGG | + | chr3_2:88474195-88474214 | None:intergenic | 15.0% |
| !! | CAAGATATTAAATTGATATA+TGG | - | chr3_2:88474369-88474388 | Msa0435340:intron | 15.0% |
| !!! | TTCTTTTTTGTTTTCATTTT+TGG | - | chr3_2:88474720-88474739 | Msa0435340:intron | 15.0% |
| !!! | TCTTTTTTGTTTTCATTTTT+GGG | - | chr3_2:88474721-88474740 | Msa0435340:intron | 15.0% |
| !! | AAAATTAAAACATGAACTTA+AGG | - | chr3_2:88475351-88475370 | Msa0435340:intron | 15.0% |
| !! | AAATTAAAACATGAACTTAA+GGG | - | chr3_2:88475352-88475371 | Msa0435340:intron | 15.0% |
| !! | AGATAAATTTCTTGATTATT+AGG | - | chr3_2:88475435-88475454 | Msa0435340:CDS | 15.0% |
| !!! | AAAAAATGTTTCATTGTTTT+AGG | + | chr3_2:88475675-88475694 | None:intergenic | 15.0% |
| !! | ATAACAATATTAATATACAC+AGG | + | chr3_2:88475883-88475902 | None:intergenic | 15.0% |
| !!! | ATATATGTTTTGTTTTGAAC+AGG | + | chr3_2:88471886-88471905 | None:intergenic | 20.0% |
| !!! | TTTAATTTGATCATAGGAAT+AGG | - | chr3_2:88471967-88471986 | Msa0435340:three_prime_UTR | 20.0% |
| !! | AATTAGTACTTACTTGATAA+TGG | + | chr3_2:88472152-88472171 | None:intergenic | 20.0% |
| !!! | TAAACTTCAATTTGTTTGTT+TGG | - | chr3_2:88472216-88472235 | Msa0435340:intron | 20.0% |
| !! | GTGAAAATATATAGAAATGA+AGG | + | chr3_2:88472544-88472563 | None:intergenic | 20.0% |
| !!! | TTTCTATATATTTTCACAGT+TGG | - | chr3_2:88472547-88472566 | Msa0435340:intron | 20.0% |
| !!! | TTCTATATATTTTCACAGTT+GGG | - | chr3_2:88472548-88472567 | Msa0435340:intron | 20.0% |
| !! | AAATGAATAAAATATGCATC+AGG | + | chr3_2:88472897-88472916 | None:intergenic | 20.0% |
| !! | TATCAAAGGATGATAAAAAT+GGG | + | chr3_2:88473112-88473131 | None:intergenic | 20.0% |
| !! | TTATCAAAGGATGATAAAAA+TGG | + | chr3_2:88473113-88473132 | None:intergenic | 20.0% |
| !!! | TCATAAATAAAAGTATACAC+AGG | + | chr3_2:88473182-88473201 | None:intergenic | 20.0% |
| !!! | GTATACTTTTATTTATGAAG+AGG | - | chr3_2:88473184-88473203 | Msa0435340:intron | 20.0% |
| !! | ACAAATACATATTAAAGGAA+GGG | + | chr3_2:88473473-88473492 | None:intergenic | 20.0% |
| !! | TACAAATACATATTAAAGGA+AGG | + | chr3_2:88473474-88473493 | None:intergenic | 20.0% |
| !!! | TGTCTTTTTTTCTCTTATTA+TGG | - | chr3_2:88473808-88473827 | Msa0435340:intron | 20.0% |
| !! | GTTATTACTCAAATCAAATA+TGG | - | chr3_2:88473878-88473897 | Msa0435340:intron | 20.0% |
| !!! | CCATTTTATACTTTATTCTA+TGG | + | chr3_2:88474155-88474174 | None:intergenic | 20.0% |
| !! | CCATAGAATAAAGTATAAAA+TGG | - | chr3_2:88474152-88474171 | Msa0435340:intron | 20.0% |
| !! | AGATTATGTTTATCATACAT+TGG | - | chr3_2:88474446-88474465 | Msa0435340:intron | 20.0% |
| !! | CATCAAAAAAGAAAAAAACT+TGG | - | chr3_2:88475226-88475245 | Msa0435340:intron | 20.0% |
| !! | GATTAAAAAATTATACCTGA+GGG | + | chr3_2:88475648-88475667 | None:intergenic | 20.0% |
| !! | TGATTAAAAAATTATACCTG+AGG | + | chr3_2:88475649-88475668 | None:intergenic | 20.0% |
| !!! | TATCAATAATATTGACTTGT+TGG | - | chr3_2:88475990-88476009 | Msa0435340:five_prime_UTR | 20.0% |
| !!! | ATCAATAATATTGACTTGTT+GGG | - | chr3_2:88475991-88476010 | Msa0435340:five_prime_UTR | 20.0% |
| !!! | TTTTGTTTTGAACAGGTAAA+AGG | + | chr3_2:88471879-88471898 | None:intergenic | 25.0% |
| !! | CAATCTAGAATATCGAAAAA+TGG | - | chr3_2:88472003-88472022 | Msa0435340:three_prime_UTR | 25.0% |
| !! | TCTATATATTTTCACAGTTG+GGG | - | chr3_2:88472549-88472568 | Msa0435340:intron | 25.0% |
| !! | TATGAAATTGGTCAGATTTT+TGG | + | chr3_2:88472750-88472769 | None:intergenic | 25.0% |
| !!! | ATTTTAATACAATGCAGCAA+TGG | + | chr3_2:88472833-88472852 | None:intergenic | 25.0% |
| ! | GTAAAAGAAAGTTAAGAAGT+CGG | + | chr3_2:88472867-88472886 | None:intergenic | 25.0% |
| !! | CTTAACTTTCTTTTACCAAA+CGG | - | chr3_2:88472871-88472890 | Msa0435340:intron | 25.0% |
| ! | TAAAATTAGATTCCCATAGA+TGG | + | chr3_2:88473047-88473066 | None:intergenic | 25.0% |
| !! | TTTTACCTGACAATTTTTTG+AGG | + | chr3_2:88473072-88473091 | None:intergenic | 25.0% |
| ! | CAAAAAATTGTCAGGTAAAA+AGG | - | chr3_2:88473072-88473091 | Msa0435340:intron | 25.0% |
| !!! | TTCTGTTATTATATTGGTTC+TGG | - | chr3_2:88473222-88473241 | Msa0435340:intron | 25.0% |
| ! | TTGTTATAACTGAAATTGAC+CGG | - | chr3_2:88473497-88473516 | Msa0435340:intron | 25.0% |
| ! | AGTTCTACTTAATAACTATC+TGG | - | chr3_2:88473544-88473563 | Msa0435340:CDS | 25.0% |
| ! | TATTACTAACTCTTAAGTCA+TGG | - | chr3_2:88473633-88473652 | Msa0435340:intron | 25.0% |
| ! | AAATCAAATATGGGATTAGA+GGG | - | chr3_2:88473888-88473907 | Msa0435340:intron | 25.0% |
| ! | TATCAGGTTTCAATAAATGA+GGG | - | chr3_2:88473971-88473990 | Msa0435340:intron | 25.0% |
| !!! | AATTTTCATTTCTGTTTCTG+TGG | - | chr3_2:88474065-88474084 | Msa0435340:intron | 25.0% |
| ! | TTATGTTTATCATACATTGG+CGG | - | chr3_2:88474449-88474468 | Msa0435340:intron | 25.0% |
| ! | ACAAGAACAATTAAGTCAAT+AGG | + | chr3_2:88474811-88474830 | None:intergenic | 25.0% |
| !!! | TGACTTAATTGTTCTTGTTT+TGG | - | chr3_2:88474813-88474832 | Msa0435340:CDS | 25.0% |
| ! | ATGTTTGGGAAAAATAGAAT+AGG | - | chr3_2:88474911-88474930 | Msa0435340:CDS | 25.0% |
| !! | TGATTGTGTTGGTAAAAAAT+TGG | + | chr3_2:88475106-88475125 | None:intergenic | 25.0% |
| ! | TGATAAAAATATAGGGTGAA+AGG | + | chr3_2:88475208-88475227 | None:intergenic | 25.0% |
| ! | ACTTAAGGGAAAAAAAATTC+AGG | - | chr3_2:88475366-88475385 | Msa0435340:intron | 25.0% |
| ! | ATTAGGATTAATATCCCATA+TGG | - | chr3_2:88475452-88475471 | Msa0435340:CDS | 25.0% |
| !!! | TCAATAATATTGACTTGTTG+GGG | - | chr3_2:88475992-88476011 | Msa0435340:five_prime_UTR | 25.0% |
| ! | TCTAGAATATCGAAAAATGG+CGG | - | chr3_2:88472006-88472025 | Msa0435340:three_prime_UTR | 30.0% |
| !! | CTTACTTGATAATGGAAAGA+AGG | + | chr3_2:88472144-88472163 | None:intergenic | 30.0% |
| ! | CTTCAATTTGTTTGTTTGGT+AGG | - | chr3_2:88472220-88472239 | Msa0435340:intron | 30.0% |
| ! | GTACTTTTACATGTGAAATC+AGG | + | chr3_2:88472588-88472607 | None:intergenic | 30.0% |
| !! | TTCACATGTAAAAGTACTGA+AGG | - | chr3_2:88472591-88472610 | Msa0435340:intron | 30.0% |
| !!! | ATGGTTCATTGATTCTTTTG+AGG | - | chr3_2:88472712-88472731 | Msa0435340:intron | 30.0% |
| !!! | TCATTGATTCTTTTGAGGAA+TGG | - | chr3_2:88472717-88472736 | Msa0435340:intron | 30.0% |
| ! | GCATGTACAACACTTAATTT+TGG | - | chr3_2:88472933-88472952 | Msa0435340:intron | 30.0% |
| ! | TGTACAACACTTAATTTTGG+TGG | - | chr3_2:88472936-88472955 | Msa0435340:intron | 30.0% |
| !! | GTACAACACTTAATTTTGGT+GGG | - | chr3_2:88472937-88472956 | Msa0435340:intron | 30.0% |
| TTAGTAACAAACTCAGTCTT+TGG | + | chr3_2:88472991-88473010 | None:intergenic | 30.0% | |
| TTACACCTCAAAAAATTGTC+AGG | - | chr3_2:88473064-88473083 | Msa0435340:intron | 30.0% | |
| AATGTGTGCTAACTTATCAA+AGG | + | chr3_2:88473126-88473145 | None:intergenic | 30.0% | |
| AGAGTCTTCTACTATATATC+AGG | - | chr3_2:88473279-88473298 | Msa0435340:intron | 30.0% | |
| GAGTCTTCTACTATATATCA+GGG | - | chr3_2:88473280-88473299 | Msa0435340:intron | 30.0% | |
| GTAATCTTAAGTCAATATGC+CGG | + | chr3_2:88473519-88473538 | None:intergenic | 30.0% | |
| ! | AGTCATGGATGTAATCATTT+TGG | - | chr3_2:88473648-88473667 | Msa0435340:intron | 30.0% |
| TCAACCATTAATTAAGCCAA+GGG | + | chr3_2:88473688-88473707 | None:intergenic | 30.0% | |
| TTAATTAATGGTTGAGGACT+TGG | - | chr3_2:88473693-88473712 | Msa0435340:intron | 30.0% | |
| !! | AGCTTTATTGTATATGAGCA+CGG | - | chr3_2:88473785-88473804 | Msa0435340:intron | 30.0% |
| TTATTATGGTTACAAGCAGA+AGG | - | chr3_2:88473822-88473841 | Msa0435340:intron | 30.0% | |
| CAAATCAAATATGGGATTAG+AGG | - | chr3_2:88473887-88473906 | Msa0435340:intron | 30.0% | |
| AATCAAATATGGGATTAGAG+GGG | - | chr3_2:88473889-88473908 | Msa0435340:intron | 30.0% | |
| ! | TTATGCTACTTCTAAGTATC+AGG | - | chr3_2:88473955-88473974 | Msa0435340:intron | 30.0% |
| GTATCAGGTTTCAATAAATG+AGG | - | chr3_2:88473970-88473989 | Msa0435340:intron | 30.0% | |
| !!! | AATCACCCTTACATGTTTTT+TGG | - | chr3_2:88474105-88474124 | Msa0435340:intron | 30.0% |
| AAATATACAAGTGCTAGGTT+TGG | - | chr3_2:88474287-88474306 | Msa0435340:intron | 30.0% | |
| CTTAAAACAGCTAATCAGAT+GGG | + | chr3_2:88474570-88474589 | None:intergenic | 30.0% | |
| ACTTAAAACAGCTAATCAGA+TGG | + | chr3_2:88474571-88474590 | None:intergenic | 30.0% | |
| ATCTCTATGTATGACATGAT+TGG | + | chr3_2:88474643-88474662 | None:intergenic | 30.0% | |
| !!! | GTGGTGCTACAATTTTTATA+AGG | + | chr3_2:88474779-88474798 | None:intergenic | 30.0% |
| ACAATTAAGTCAATAGGAGT+GGG | + | chr3_2:88474805-88474824 | None:intergenic | 30.0% | |
| AACAATTAAGTCAATAGGAG+TGG | + | chr3_2:88474806-88474825 | None:intergenic | 30.0% | |
| AACAGTTATCTTGATTGTGT+TGG | + | chr3_2:88475117-88475136 | None:intergenic | 30.0% | |
| AAAAAGAAAAAAACTTGGCC+AGG | - | chr3_2:88475231-88475250 | Msa0435340:intron | 30.0% | |
| AAAAGAAAAAAACTTGGCCA+GGG | - | chr3_2:88475232-88475251 | Msa0435340:intron | 30.0% | |
| ! | TAATTTTCTTCCTGAATGCT+TGG | + | chr3_2:88475338-88475357 | None:intergenic | 30.0% |
| ! | ACATTGGCTAAAAACCATAT+GGG | + | chr3_2:88475469-88475488 | None:intergenic | 30.0% |
| !! | TTTTAGCCAATGTCTTGTTA+AGG | - | chr3_2:88475476-88475495 | Msa0435340:CDS | 30.0% |
| TAACCATATATGAATGTGGT+GGG | + | chr3_2:88475550-88475569 | None:intergenic | 30.0% | |
| TTCGTAACCATATATGAATG+TGG | + | chr3_2:88475554-88475573 | None:intergenic | 30.0% | |
| TCATATATGGTTACGAAGAT+TGG | - | chr3_2:88475557-88475576 | Msa0435340:CDS | 30.0% | |
| AAATTAATCACTTCTATCGC+AGG | - | chr3_2:88475713-88475732 | Msa0435340:intron | 30.0% | |
| ! | AGATTCATTTTCCGAATTTG+GGG | + | chr3_2:88475814-88475833 | None:intergenic | 30.0% |
| ! | GAGATTCATTTTCCGAATTT+GGG | + | chr3_2:88475815-88475834 | None:intergenic | 30.0% |
| ! | AGAGATTCATTTTCCGAATT+TGG | + | chr3_2:88475816-88475835 | None:intergenic | 30.0% |
| TTCAGCACAAAAACATATTC+TGG | - | chr3_2:88476019-88476038 | Msa0435340:five_prime_UTR | 30.0% | |
| CTTCGAAATCTAAAAGCTTC+TGG | - | chr3_2:88472062-88472081 | Msa0435340:CDS | 35.0% | |
| ATGATATGATCGGTTGAAGT+GGG | + | chr3_2:88472106-88472125 | None:intergenic | 35.0% | |
| ATTTGTTTGTTTGGTAGGAC+TGG | - | chr3_2:88472225-88472244 | Msa0435340:intron | 35.0% | |
| TTTGTTTGTTTGGTAGGACT+GGG | - | chr3_2:88472226-88472245 | Msa0435340:intron | 35.0% | |
| ! | GTTCAAGAGCGTGTTAATAT+AGG | - | chr3_2:88472252-88472271 | Msa0435340:CDS | 35.0% |
| ! | ATCATTGCTGTTGATCAACT+TGG | - | chr3_2:88472456-88472475 | Msa0435340:intron | 35.0% |
| ! | TCATTGCTGTTGATCAACTT+GGG | - | chr3_2:88472457-88472476 | Msa0435340:intron | 35.0% |
| ! | ATATATTTTCACAGTTGGGG+CGG | - | chr3_2:88472552-88472571 | Msa0435340:intron | 35.0% |
| TACTTTGTTGCTCGACTTTA+AGG | - | chr3_2:88472635-88472654 | Msa0435340:intron | 35.0% | |
| ATGTCCAAGCAGTATGAAAT+TGG | + | chr3_2:88472762-88472781 | None:intergenic | 35.0% | |
| ! | ATACTGCTTGGACATTCTTT+TGG | - | chr3_2:88472767-88472786 | Msa0435340:intron | 35.0% |
| ! | TTAAGTGTTGTACATGCTCA+GGG | + | chr3_2:88472930-88472949 | None:intergenic | 35.0% |
| ! | ATTAAGTGTTGTACATGCTC+AGG | + | chr3_2:88472931-88472950 | None:intergenic | 35.0% |
| ! | ATCTGTTTCTTCTGTAAACC+CGG | + | chr3_2:88472968-88472987 | None:intergenic | 35.0% |
| TTACTAAGTTTCGAGCAACA+TGG | - | chr3_2:88473004-88473023 | Msa0435340:intron | 35.0% | |
| !! | TTGTCTTTGAAACGAAGTGT+TGG | - | chr3_2:88473393-88473412 | Msa0435340:CDS | 35.0% |
| GAGAACCTAAGTCAATATGT+CGG | + | chr3_2:88473594-88473613 | None:intergenic | 35.0% | |
| ! | GGATGAATTTTTATGACCCT+TGG | - | chr3_2:88473669-88473688 | Msa0435340:intron | 35.0% |
| ATGACCCTTGGCTTAATTAA+TGG | - | chr3_2:88473681-88473700 | Msa0435340:intron | 35.0% | |
| CTCAACCATTAATTAAGCCA+AGG | + | chr3_2:88473689-88473708 | None:intergenic | 35.0% | |
| CTTGGCTTAATTAATGGTTG+AGG | - | chr3_2:88473687-88473706 | Msa0435340:intron | 35.0% | |
| ATACAATAAAGCTCTTGCCA+CGG | + | chr3_2:88473778-88473797 | None:intergenic | 35.0% | |
| AGAGTCATTCTTCTACTTGT+AGG | - | chr3_2:88473914-88473933 | Msa0435340:intron | 35.0% | |
| TGAGGGAAAGCTAGAAAAAA+TGG | - | chr3_2:88473988-88474007 | Msa0435340:intron | 35.0% | |
| AAATATCATTCCACGAAGCA+TGG | - | chr3_2:88474015-88474034 | Msa0435340:intron | 35.0% | |
| GTTGGCCAAAAAACATGTAA+GGG | + | chr3_2:88474113-88474132 | None:intergenic | 35.0% | |
| TGTTGGCCAAAAAACATGTA+AGG | + | chr3_2:88474114-88474133 | None:intergenic | 35.0% | |
| GTGACAATTCTCATGTTTGT+TGG | + | chr3_2:88474131-88474150 | None:intergenic | 35.0% | |
| ! | CAGTTTTTCTGATGCATTTG+TGG | - | chr3_2:88474227-88474246 | Msa0435340:intron | 35.0% |
| ACCTAGCACTTGTATATTTG+CGG | + | chr3_2:88474286-88474305 | None:intergenic | 35.0% | |
| ! | ATTGCCAAACCTTTGAAGAA+GGG | + | chr3_2:88474538-88474557 | None:intergenic | 35.0% |
| ! | AAGAACAACATATACCGACT+AGG | - | chr3_2:88474881-88474900 | Msa0435340:CDS | 35.0% |
| AAATGTCTAACCAAGCATTC+AGG | - | chr3_2:88475325-88475344 | Msa0435340:intron | 35.0% | |
| ! | GACATTGGCTAAAAACCATA+TGG | + | chr3_2:88475470-88475489 | None:intergenic | 35.0% |
| GTAACCATATATGAATGTGG+TGG | + | chr3_2:88475551-88475570 | None:intergenic | 35.0% | |
| GAAGATTGGATGAATTACGA+AGG | - | chr3_2:88475571-88475590 | Msa0435340:CDS | 35.0% | |
| AGGTTCCATGTGAAATTATC+AGG | - | chr3_2:88475620-88475639 | Msa0435340:CDS | 35.0% | |
| GGTTCCATGTGAAATTATCA+GGG | - | chr3_2:88475621-88475640 | Msa0435340:CDS | 35.0% | |
| GTCAATGAACACAAAATGTC+CGG | + | chr3_2:88475739-88475758 | None:intergenic | 35.0% | |
| AAGCATAAAACACAGCTGAA+TGG | + | chr3_2:88475776-88475795 | None:intergenic | 35.0% | |
| AAGGTTTCTTACCCCAAATT+CGG | - | chr3_2:88475800-88475819 | Msa0435340:CDS | 35.0% | |
| AAAATGAATCTCTTCCCGAA+GGG | - | chr3_2:88475823-88475842 | Msa0435340:CDS | 35.0% | |
| CTTTACTGAGAAACAAGACA+CGG | + | chr3_2:88475939-88475958 | None:intergenic | 35.0% | |
| !! | TGTCTTGTTTCTCAGTAAAG+TGG | - | chr3_2:88475939-88475958 | Msa0435340:five_prime_UTR | 35.0% |
| CTCAGTAAAGTGGAATATAC+TGG | - | chr3_2:88475949-88475968 | Msa0435340:five_prime_UTR | 35.0% | |
| ATCATAGGAATAGGATAGCG+TGG | - | chr3_2:88471976-88471995 | Msa0435340:three_prime_UTR | 40.0% | |
| ATTAGACAAAACGACGACGT+CGG | - | chr3_2:88472034-88472053 | Msa0435340:CDS | 40.0% | |
| GATGATATGATCGGTTGAAG+TGG | + | chr3_2:88472107-88472126 | None:intergenic | 40.0% | |
| GAGCGTGTTAATATAGGTTC+TGG | - | chr3_2:88472258-88472277 | Msa0435340:CDS | 40.0% | |
| !! | AACCATCTAACTTTAGAGCC+AGG | + | chr3_2:88472288-88472307 | None:intergenic | 40.0% |
| ! | GTGGTTCATTACTGGTTGAA+CGG | + | chr3_2:88472311-88472330 | None:intergenic | 40.0% |
| GAGAAAACGTGGTTCATTAC+TGG | + | chr3_2:88472319-88472338 | None:intergenic | 40.0% | |
| ! | GTAACAGTGTTGAGAAAACG+TGG | + | chr3_2:88472330-88472349 | None:intergenic | 40.0% |
| ATAACAAGCGTAGGAGAATC+AGG | + | chr3_2:88472366-88472385 | None:intergenic | 40.0% | |
| ! | TGATTCTCCTACGCTTGTTA+TGG | - | chr3_2:88472365-88472384 | Msa0435340:intron | 40.0% |
| !! | AGCAATGATTCTGAAACGAG+AGG | + | chr3_2:88472445-88472464 | None:intergenic | 40.0% |
| TGTTGATCTTGCAGAAACTG+AGG | - | chr3_2:88472688-88472707 | Msa0435340:intron | 40.0% | |
| CTGACCAATTTCATACTGCT+TGG | - | chr3_2:88472755-88472774 | Msa0435340:intron | 40.0% | |
| AAAATATGCATCAGGCCGTT+TGG | + | chr3_2:88472889-88472908 | None:intergenic | 40.0% | |
| TAAGTTTCGAGCAACATGGA+AGG | - | chr3_2:88473008-88473027 | Msa0435340:intron | 40.0% | |
| AAGTTTCGAGCAACATGGAA+GGG | - | chr3_2:88473009-88473028 | Msa0435340:intron | 40.0% | |
| TTCCCATAGATGGTTCAGAA+CGG | + | chr3_2:88473037-88473056 | None:intergenic | 40.0% | |
| AGTATCAACAAACTGAGGTG+AGG | + | chr3_2:88473257-88473276 | None:intergenic | 40.0% | |
| TCTGCAGTATCAACAAACTG+AGG | + | chr3_2:88473262-88473281 | None:intergenic | 40.0% | |
| !! | GTAGACCGACATATTGACTT+AGG | - | chr3_2:88473586-88473605 | Msa0435340:CDS | 40.0% |
| TAGGTTCTCTTTGTCACTGT+TGG | - | chr3_2:88473605-88473624 | Msa0435340:CDS | 40.0% | |
| AGGTTCTCTTTGTCACTGTT+GGG | - | chr3_2:88473606-88473625 | Msa0435340:CDS | 40.0% | |
| TAAAAAGTGATTGGCAACCC+AGG | + | chr3_2:88473856-88473875 | None:intergenic | 40.0% | |
| AAAATTCCTTCCCGATACCA+GGG | + | chr3_2:88474051-88474070 | None:intergenic | 40.0% | |
| ! | TGTTTCTGTGGAATTAGCCA+TGG | - | chr3_2:88474077-88474096 | Msa0435340:intron | 40.0% |
| GTATATTTGCGGACCATGTT+AGG | + | chr3_2:88474275-88474294 | None:intergenic | 40.0% | |
| TCCGCAAATATACAAGTGCT+AGG | - | chr3_2:88474282-88474301 | Msa0435340:intron | 40.0% | |
| ! | AGGTTTGGTACACATTCAAC+CGG | - | chr3_2:88474302-88474321 | Msa0435340:intron | 40.0% |
| ! | CTCTTCAATCAGTTTTTGCC+CGG | + | chr3_2:88474324-88474343 | None:intergenic | 40.0% |
| ATCAAGTCTGCTAACTGGTA+TGG | - | chr3_2:88474346-88474365 | Msa0435340:intron | 40.0% | |
| ! | TTGCATTTGGAGCATTTGCT+AGG | - | chr3_2:88474508-88474527 | Msa0435340:intron | 40.0% |
| ! | TTGCCAAACCTTTGAAGAAG+GGG | + | chr3_2:88474537-88474556 | None:intergenic | 40.0% |
| ! | GATTGCCAAACCTTTGAAGA+AGG | + | chr3_2:88474539-88474558 | None:intergenic | 40.0% |
| !! | AAAGCAGGCTCTATTGACTT+CGG | + | chr3_2:88474688-88474707 | None:intergenic | 40.0% |
| GAATCGCATCTCAAAAAAGC+AGG | + | chr3_2:88474703-88474722 | None:intergenic | 40.0% | |
| CAAACATGTAGTTGCCTAGT+CGG | + | chr3_2:88474898-88474917 | None:intergenic | 40.0% | |
| GACTAGGCAACTACATGTTT+GGG | - | chr3_2:88474897-88474916 | Msa0435340:CDS | 40.0% | |
| AATAGGTTAGTAGCTGCTGA+TGG | - | chr3_2:88474928-88474947 | Msa0435340:CDS | 40.0% | |
| CATATCTATCCTGTATCACC+AGG | - | chr3_2:88474982-88475001 | Msa0435340:intron | 40.0% | |
| GAGTAAAGGGAGCAGTAAAT+AGG | - | chr3_2:88475066-88475085 | Msa0435340:intron | 40.0% | |
| TGCGCCTTGTATCATTTGTA+AGG | - | chr3_2:88475136-88475155 | Msa0435340:CDS | 40.0% | |
| GCGCCTTGTATCATTTGTAA+GGG | - | chr3_2:88475137-88475156 | Msa0435340:CDS | 40.0% | |
| GAGCCCTTACAAATGATACA+AGG | + | chr3_2:88475143-88475162 | None:intergenic | 40.0% | |
| TAATGCTCCACTGCAATGTA+GGG | + | chr3_2:88475184-88475203 | None:intergenic | 40.0% | |
| ATAATGCTCCACTGCAATGT+AGG | + | chr3_2:88475185-88475204 | None:intergenic | 40.0% | |
| TTGACCTTGAATTTGTGGTG+TGG | - | chr3_2:88475257-88475276 | Msa0435340:intron | 40.0% | |
| TATGCCACACCACAAATTCA+AGG | + | chr3_2:88475264-88475283 | None:intergenic | 40.0% | |
| TGATGAATATCTGTGCCTCT+TGG | - | chr3_2:88475292-88475311 | Msa0435340:CDS | 40.0% | |
| GATGAATATCTGTGCCTCTT+GGG | - | chr3_2:88475293-88475312 | Msa0435340:CDS | 40.0% | |
| CATTTCCATTCTTACCCAAG+AGG | + | chr3_2:88475310-88475329 | None:intergenic | 40.0% | |
| TGCAAGAAAGTGATGTAGAG+AGG | + | chr3_2:88475507-88475526 | None:intergenic | 40.0% | |
| ! | CTGTGTTTTATGCTTGTCGA+AGG | - | chr3_2:88475781-88475800 | Msa0435340:CDS | 40.0% |
| GAAAATGAATCTCTTCCCGA+AGG | - | chr3_2:88475822-88475841 | Msa0435340:CDS | 40.0% | |
| ! | AATATAGGTTCTGGTCCTCC+TGG | - | chr3_2:88472267-88472286 | Msa0435340:CDS | 45.0% |
| !! | CATCTAACTTTAGAGCCAGG+AGG | + | chr3_2:88472285-88472304 | None:intergenic | 45.0% |
| !! | CTCCTGGCTCTAAAGTTAGA+TGG | - | chr3_2:88472283-88472302 | Msa0435340:CDS | 45.0% |
| CCATGAACCATAACAAGCGT+AGG | + | chr3_2:88472375-88472394 | None:intergenic | 45.0% | |
| !! | CCTACGCTTGTTATGGTTCA+TGG | - | chr3_2:88472372-88472391 | Msa0435340:intron | 45.0% |
| ATCTTGCAGAAACTGAGGCA+TGG | - | chr3_2:88472693-88472712 | Msa0435340:intron | 45.0% | |
| ! | CTGCTTGGACATTCTTTTGG+TGG | - | chr3_2:88472770-88472789 | Msa0435340:intron | 45.0% |
| !! | TTAATTTTGGTGGGACCTGC+CGG | - | chr3_2:88472946-88472965 | Msa0435340:intron | 45.0% |
| ! | AGCCGTTCTGAACCATCTAT+GGG | - | chr3_2:88473032-88473051 | Msa0435340:intron | 45.0% |
| GTGAGAATGAGCATCTACAC+AGG | + | chr3_2:88473350-88473369 | None:intergenic | 45.0% | |
| AATGCATTTCGCACGAGTTC+AGG | - | chr3_2:88473431-88473450 | Msa0435340:intron | 45.0% | |
| CGAGTTCAGGTCAATATTGC+TGG | - | chr3_2:88473444-88473463 | Msa0435340:intron | 45.0% | |
| GTTGCCTTCATGTGACTAAG+AGG | - | chr3_2:88473717-88473736 | Msa0435340:intron | 45.0% | |
| GTGACCTCTTAGTCACATGA+AGG | + | chr3_2:88473724-88473743 | None:intergenic | 45.0% | |
| TGTGACTAAGAGGTCACAAG+TGG | - | chr3_2:88473727-88473746 | Msa0435340:intron | 45.0% | |
| ! | ATTGGTGATTCCATGCTTCG+TGG | + | chr3_2:88474028-88474047 | None:intergenic | 45.0% |
| GAATCACCAATCCCTGGTAT+CGG | - | chr3_2:88474037-88474056 | Msa0435340:intron | 45.0% | |
| AATCACCAATCCCTGGTATC+GGG | - | chr3_2:88474038-88474057 | Msa0435340:intron | 45.0% | |
| GAAAATTCCTTCCCGATACC+AGG | + | chr3_2:88474052-88474071 | None:intergenic | 45.0% | |
| CTGTGGAATTAGCCATGGAA+AGG | - | chr3_2:88474082-88474101 | Msa0435340:intron | 45.0% | |
| GTAAGGGTGATTCCTTTCCA+TGG | + | chr3_2:88474097-88474116 | None:intergenic | 45.0% | |
| TTCTGATGCATTTGTGGCAG+AGG | - | chr3_2:88474233-88474252 | Msa0435340:intron | 45.0% | |
| TGCATTTGTGGCAGAGGTTT+AGG | - | chr3_2:88474239-88474258 | Msa0435340:intron | 45.0% | |
| ! | GGTTTGGTACACATTCAACC+GGG | - | chr3_2:88474303-88474322 | Msa0435340:intron | 45.0% |
| CGGGCAAAAACTGATTGAAG+AGG | - | chr3_2:88474322-88474341 | Msa0435340:intron | 45.0% | |
| GAGGAATCAAGTCTGCTAAC+TGG | - | chr3_2:88474341-88474360 | Msa0435340:intron | 45.0% | |
| ATGCCCCTTCTTCAAAGGTT+TGG | - | chr3_2:88474531-88474550 | Msa0435340:intron | 45.0% | |
| CGACTAGGCAACTACATGTT+TGG | - | chr3_2:88474896-88474915 | Msa0435340:CDS | 45.0% | |
| ! | ATCCTGATTTCTGAGGGGAA+TGG | - | chr3_2:88475024-88475043 | Msa0435340:intron | 45.0% |
| ! | TGATTTCTGAGGGGAATGGT+GGG | - | chr3_2:88475028-88475047 | Msa0435340:intron | 45.0% |
| TGCAATGTAGGGAAGACCTT+GGG | + | chr3_2:88475173-88475192 | None:intergenic | 45.0% | |
| CAAATTCAAGGTCAACTCCC+TGG | + | chr3_2:88475252-88475271 | None:intergenic | 45.0% | |
| GGGAGTTGACCTTGAATTTG+TGG | - | chr3_2:88475252-88475271 | Msa0435340:intron | 45.0% | |
| GTGAGGCCTTAACAAGACAT+TGG | + | chr3_2:88475485-88475504 | None:intergenic | 45.0% | |
| GAAAGTGATGTAGAGAGGTG+AGG | + | chr3_2:88475502-88475521 | None:intergenic | 45.0% | |
| GTGCCCACCACATTCATATA+TGG | - | chr3_2:88475544-88475563 | Msa0435340:CDS | 45.0% | |
| CATATGCTTGCGAGCTTCTT+GGG | + | chr3_2:88475599-88475618 | None:intergenic | 45.0% | |
| TCATATGCTTGCGAGCTTCT+TGG | + | chr3_2:88475600-88475619 | None:intergenic | 45.0% | |
| AGAAGCTCGCAAGCATATGA+AGG | - | chr3_2:88475600-88475619 | Msa0435340:CDS | 45.0% | |
| GGGACCCTGATAATTTCACA+TGG | + | chr3_2:88475628-88475647 | None:intergenic | 45.0% | |
| TGAAATTATCAGGGTCCCTC+AGG | - | chr3_2:88475630-88475649 | Msa0435340:CDS | 45.0% | |
| TAATCACTTCTATCGCAGGC+CGG | - | chr3_2:88475717-88475736 | Msa0435340:intron | 45.0% | |
| GTGTTCATTGACAACCCAAG+TGG | - | chr3_2:88475747-88475766 | Msa0435340:CDS | 45.0% | |
| !!! | AATTAAATTATTAGTTTAAT+CGG | + | chr3_2:88471954-88471973 | None:intergenic | 5.0% |
| !!! | TTATTTTAAATTTTAAGATT+AGG | + | chr3_2:88473372-88473391 | None:intergenic | 5.0% |
| CGGTTGAAGTGGGAATCCAA+CGG | + | chr3_2:88472096-88472115 | None:intergenic | 50.0% | |
| CTCAGCGGCGATGATATGAT+CGG | + | chr3_2:88472116-88472135 | None:intergenic | 50.0% | |
| !! | GGAAAGAAGGCGTTTCTCAG+CGG | + | chr3_2:88472131-88472150 | None:intergenic | 50.0% |
| TCATGGATACGCTGCTTCTC+AGG | - | chr3_2:88472389-88472408 | Msa0435340:intron | 50.0% | |
| CATGGATACGCTGCTTCTCA+GGG | - | chr3_2:88472390-88472409 | Msa0435340:intron | 50.0% | |
| TGCTTCCAAATACGCGCTCA+AGG | - | chr3_2:88472799-88472818 | Msa0435340:intron | 50.0% | |
| ACTGACCTTGAGCGCGTATT+TGG | + | chr3_2:88472807-88472826 | None:intergenic | 50.0% | |
| !! | TAATTTTGGTGGGACCTGCC+GGG | - | chr3_2:88472947-88472966 | Msa0435340:intron | 50.0% |
| GTTTCTTCTGTAAACCCGGC+AGG | + | chr3_2:88472964-88472983 | None:intergenic | 50.0% | |
| ! | GAGCCGTTCTGAACCATCTA+TGG | - | chr3_2:88473031-88473050 | Msa0435340:intron | 50.0% |
| TCACAAGTGGTAAGACTGCC+TGG | - | chr3_2:88473740-88473759 | Msa0435340:intron | 50.0% | |
| CACAAGTGGTAAGACTGCCT+GGG | - | chr3_2:88473741-88473760 | Msa0435340:intron | 50.0% | |
| ! | AAGCAGAAGGAGCTTGTTCC+TGG | - | chr3_2:88473835-88473854 | Msa0435340:intron | 50.0% |
| ! | AGCAGAAGGAGCTTGTTCCT+GGG | - | chr3_2:88473836-88473855 | Msa0435340:intron | 50.0% |
| AGCATGGAATCACCAATCCC+TGG | - | chr3_2:88474031-88474050 | Msa0435340:intron | 50.0% | |
| TGGCAGAGGTTTAGGTCCTT+GGG | - | chr3_2:88474247-88474266 | Msa0435340:intron | 50.0% | |
| CTAGGATGCCCCTTCTTCAA+AGG | - | chr3_2:88474526-88474545 | Msa0435340:intron | 50.0% | |
| AGTCAATAGGAGTGGGCAAG+TGG | + | chr3_2:88474798-88474817 | None:intergenic | 50.0% | |
| ACATGTGCTCCTGGTGATAC+AGG | + | chr3_2:88474994-88475013 | None:intergenic | 50.0% | |
| TCCCTGCATCCTGATTTCTG+AGG | - | chr3_2:88475017-88475036 | Msa0435340:intron | 50.0% | |
| CCCTCAGAAATCAGGATGCA+GGG | + | chr3_2:88475021-88475040 | None:intergenic | 50.0% | |
| CCCTGCATCCTGATTTCTGA+GGG | - | chr3_2:88475018-88475037 | Msa0435340:intron | 50.0% | |
| CCTGCATCCTGATTTCTGAG+GGG | - | chr3_2:88475019-88475038 | Msa0435340:intron | 50.0% | |
| CACCATTCCCCTCAGAAATC+AGG | + | chr3_2:88475029-88475048 | None:intergenic | 50.0% | |
| ! | CTGATTTCTGAGGGGAATGG+TGG | - | chr3_2:88475027-88475046 | Msa0435340:intron | 50.0% |
| ! | GATTTCTGAGGGGAATGGTG+GGG | - | chr3_2:88475029-88475048 | Msa0435340:intron | 50.0% |
| TAAGGGCTCTTTAAGCCCCA+AGG | - | chr3_2:88475154-88475173 | Msa0435340:CDS | 50.0% | |
| GCAATGTAGGGAAGACCTTG+GGG | + | chr3_2:88475172-88475191 | None:intergenic | 50.0% | |
| CTGCAATGTAGGGAAGACCT+TGG | + | chr3_2:88475174-88475193 | None:intergenic | 50.0% | |
| AGGTCTTCCCTACATTGCAG+TGG | - | chr3_2:88475174-88475193 | Msa0435340:intron | 50.0% | |
| CTGTGCCTCTTGGGTAAGAA+TGG | - | chr3_2:88475302-88475321 | Msa0435340:CDS | 50.0% | |
| TTTCTTGCAGTGCTCCAGAG+TGG | - | chr3_2:88475518-88475537 | Msa0435340:CDS | 50.0% | |
| CAGCTGAATGGAAGCCACTT+GGG | + | chr3_2:88475764-88475783 | None:intergenic | 50.0% | |
| ACAGCTGAATGGAAGCCACT+TGG | + | chr3_2:88475765-88475784 | None:intergenic | 50.0% | |
| TAAGCAGACGATAGCCCTTC+GGG | + | chr3_2:88475840-88475859 | None:intergenic | 50.0% | |
| CTAAGCAGACGATAGCCCTT+CGG | + | chr3_2:88475841-88475860 | None:intergenic | 50.0% | |
| ! | GCTTCTGGTCTTCACTCCGT+TGG | - | chr3_2:88472077-88472096 | Msa0435340:CDS | 55.0% |
| GTGGTAAGACTGCCTGGGAA+AGG | - | chr3_2:88473746-88473765 | Msa0435340:intron | 55.0% | |
| CCACGGAAGAATCCTTTCCC+AGG | + | chr3_2:88473761-88473780 | None:intergenic | 55.0% | |
| CCTGGGAAAGGATTCTTCCG+TGG | - | chr3_2:88473758-88473777 | Msa0435340:intron | 55.0% | |
| ! | ACCAATCCCTGGTATCGGGA+AGG | - | chr3_2:88474042-88474061 | Msa0435340:intron | 55.0% |
| TCCTTCCCGATACCAGGGAT+TGG | + | chr3_2:88474046-88474065 | None:intergenic | 55.0% | |
| GTGGCAGAGGTTTAGGTCCT+TGG | - | chr3_2:88474246-88474265 | Msa0435340:intron | 55.0% | |
| GGCAGAGGTTTAGGTCCTTG+GGG | - | chr3_2:88474248-88474267 | Msa0435340:intron | 55.0% | |
| AGGTCCTTGGGGTCCTAACA+TGG | - | chr3_2:88474259-88474278 | Msa0435340:intron | 55.0% | |
| ACATTGGCGGCCAAAGCTAG+TGG | - | chr3_2:88474462-88474481 | Msa0435340:intron | 55.0% | |
| CATTGGCGGCCAAAGCTAGT+GGG | - | chr3_2:88474463-88474482 | Msa0435340:intron | 55.0% | |
| ATTGGCGGCCAAAGCTAGTG+GGG | - | chr3_2:88474464-88474483 | Msa0435340:intron | 55.0% | |
| ! | ACACAGCTCCCCACTAGCTT+TGG | + | chr3_2:88474475-88474494 | None:intergenic | 55.0% |
| CCCCTCAGAAATCAGGATGC+AGG | + | chr3_2:88475022-88475041 | None:intergenic | 55.0% | |
| CGAAGGGCTATCGTCTGCTT+AGG | - | chr3_2:88475839-88475858 | Msa0435340:CDS | 55.0% | |
| CGGACCATGTTAGGACCCCA+AGG | + | chr3_2:88474266-88474285 | None:intergenic | 60.0% | |
| CAGGGATGCACATGTGCTCC+TGG | + | chr3_2:88475003-88475022 | None:intergenic | 60.0% | |
| ! | AGGGGAATGGTGGGGACTGT+GGG | - | chr3_2:88475037-88475056 | Msa0435340:intron | 60.0% |
| ! | AATGGTGGGGACTGTGGGGA+GGG | - | chr3_2:88475042-88475061 | Msa0435340:intron | 60.0% |
| ACTGTGGGGAGGGGGAGTAA+AGG | - | chr3_2:88475052-88475071 | Msa0435340:intron | 60.0% | |
| CTGTGGGGAGGGGGAGTAAA+GGG | - | chr3_2:88475053-88475072 | Msa0435340:intron | 60.0% | |
| !! | GTGGTGGGCACTTTCCACTC+TGG | + | chr3_2:88475535-88475554 | None:intergenic | 60.0% |
| ! | GAGGGGAATGGTGGGGACTG+TGG | - | chr3_2:88475036-88475055 | Msa0435340:intron | 65.0% |
| ! | GGGGAATGGTGGGGACTGTG+GGG | - | chr3_2:88475038-88475057 | Msa0435340:intron | 65.0% |
| ! | GAATGGTGGGGACTGTGGGG+AGG | - | chr3_2:88475041-88475060 | Msa0435340:intron | 65.0% |
| ! | ATGGTGGGGACTGTGGGGAG+GGG | - | chr3_2:88475043-88475062 | Msa0435340:intron | 65.0% |
| TGGTGGGGACTGTGGGGAGG+GGG | - | chr3_2:88475044-88475063 | Msa0435340:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 88471847 | 88476046 | 88471847 | ID=Msa0435340;Name=Msa0435340 |
| chr3_2 | mRNA | 88471847 | 88476046 | 88471847 | ID=Msa0435340-mRNA-1;Parent=Msa0435340;Name=Msa0435340-mRNA-1;_AED=0.06;_eAED=0.06;_QI=175|1|1|1|1|1|9|186|386 |
| chr3_2 | exon | 88471847 | 88472158 | 88471847 | ID=Msa0435340-mRNA-1:exon:26012;Parent=Msa0435340-mRNA-1 |
| chr3_2 | exon | 88472242 | 88472365 | 88472242 | ID=Msa0435340-mRNA-1:exon:26011;Parent=Msa0435340-mRNA-1 |
| chr3_2 | exon | 88473346 | 88473445 | 88473346 | ID=Msa0435340-mRNA-1:exon:26010;Parent=Msa0435340-mRNA-1 |
| chr3_2 | exon | 88473531 | 88473640 | 88473531 | ID=Msa0435340-mRNA-1:exon:26009;Parent=Msa0435340-mRNA-1 |
| chr3_2 | exon | 88474808 | 88474968 | 88474808 | ID=Msa0435340-mRNA-1:exon:26008;Parent=Msa0435340-mRNA-1 |
| chr3_2 | exon | 88475073 | 88475191 | 88475073 | ID=Msa0435340-mRNA-1:exon:26007;Parent=Msa0435340-mRNA-1 |
| chr3_2 | exon | 88475281 | 88475327 | 88475281 | ID=Msa0435340-mRNA-1:exon:26006;Parent=Msa0435340-mRNA-1 |
| chr3_2 | exon | 88475415 | 88475651 | 88475415 | ID=Msa0435340-mRNA-1:exon:26005;Parent=Msa0435340-mRNA-1 |
| chr3_2 | exon | 88475735 | 88476046 | 88475735 | ID=Msa0435340-mRNA-1:exon:26004;Parent=Msa0435340-mRNA-1 |
| chr3_2 | five_prime_UTR | 88475872 | 88476046 | 88475872 | ID=Msa0435340-mRNA-1:five_prime_utr;Parent=Msa0435340-mRNA-1 |
| chr3_2 | CDS | 88475735 | 88475871 | 88475735 | ID=Msa0435340-mRNA-1:cds;Parent=Msa0435340-mRNA-1 |
| chr3_2 | CDS | 88475415 | 88475651 | 88475415 | ID=Msa0435340-mRNA-1:cds;Parent=Msa0435340-mRNA-1 |
| chr3_2 | CDS | 88475281 | 88475327 | 88475281 | ID=Msa0435340-mRNA-1:cds;Parent=Msa0435340-mRNA-1 |
| chr3_2 | CDS | 88475073 | 88475191 | 88475073 | ID=Msa0435340-mRNA-1:cds;Parent=Msa0435340-mRNA-1 |
| chr3_2 | CDS | 88474808 | 88474968 | 88474808 | ID=Msa0435340-mRNA-1:cds;Parent=Msa0435340-mRNA-1 |
| chr3_2 | CDS | 88473531 | 88473640 | 88473531 | ID=Msa0435340-mRNA-1:cds;Parent=Msa0435340-mRNA-1 |
| chr3_2 | CDS | 88473346 | 88473445 | 88473346 | ID=Msa0435340-mRNA-1:cds;Parent=Msa0435340-mRNA-1 |
| chr3_2 | CDS | 88472242 | 88472365 | 88472242 | ID=Msa0435340-mRNA-1:cds;Parent=Msa0435340-mRNA-1 |
| chr3_2 | CDS | 88472033 | 88472158 | 88472033 | ID=Msa0435340-mRNA-1:cds;Parent=Msa0435340-mRNA-1 |
| chr3_2 | three_prime_UTR | 88471847 | 88472032 | 88471847 | ID=Msa0435340-mRNA-1:three_prime_utr;Parent=Msa0435340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
