AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0435790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0435790 MtrunA17_Chr3g0143261 83.958 480 52 7 1 473 1 462 0.0 711
Msa0435790 MtrunA17_Chr3g0143171 87.437 398 36 5 114 507 1 388 0.0 634
Msa0435790 MtrunA17_Chr1g0157011 41.636 550 237 17 1 493 1 523 5.01e-98 306
Msa0435790 MtrunA17_Chr5g0405961 33.689 469 224 23 27 460 23 439 7.91e-44 162
Msa0435790 MtrunA17_Chr8g0371401 30.682 440 201 18 94 486 61 443 4.39e-34 134
Msa0435790 MtrunA17_Chr7g0276671 43.038 79 41 2 377 451 114 192 3.54e-11 65.1
Msa0435790 MtrunA17_Chr4g0045341 32.308 130 70 6 339 452 51 178 4.32e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0435790 AT4G35890.1 30.000 480 229 23 20 458 37 450 1.65e-29 122
Msa0435790 AT5G66100.1 39.823 113 66 1 381 493 339 449 2.09e-22 100
Msa0435790 AT5G21160.1 39.516 124 69 2 353 470 248 371 5.95e-21 97.1
Msa0435790 AT5G21160.2 39.516 124 69 2 353 470 248 371 6.71e-21 97.1
Msa0435790 AT5G21160.3 39.516 124 69 2 353 470 248 371 6.72e-21 97.1
Msa0435790 AT4G35890.2 28.894 443 208 23 20 421 37 413 1.78e-17 85.1

Find 207 sgRNAs with CRISPR-Local

Find 509 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACCCAATTCTGCTTATTT+AGG 0.088386 3_2:+89132068 Msa0435790:CDS
CACAGTCACAGGGGTAATTT+TGG 0.123601 3_2:+89131924 Msa0435790:CDS
AAATTTGCAATCAAAGAAAT+TGG 0.210385 3_2:-89132516 None:intergenic
CCTAATACTTTCTTGGTTGA+TGG 0.216597 3_2:+89131825 Msa0435790:CDS
GATCCCTCCTAATACTTTCT+TGG 0.224561 3_2:+89131818 Msa0435790:CDS
GGTAGTAACCATTGCCAATT+AGG 0.231850 3_2:-89130836 None:intergenic
ATGACCACCCGGATCGATTT+TGG 0.232959 3_2:+89137108 Msa0435790:three_prime_UTR
CTAGTGTTCATTGTATTTCC+TGG 0.241775 3_2:-89131990 None:intergenic
TATAGAGAGCCGAGACTAAT+AGG 0.264170 3_2:-89136971 None:intergenic
AATTTGTTTGAGTATTATAC+TGG 0.264468 3_2:-89132334 None:intergenic
CTCCTCCTCCTCCTGATTTA+CGG 0.268455 3_2:-89130584 None:intergenic
CATTCCCCTCCAATTTGATA+TGG 0.280736 3_2:+89130713 Msa0435790:five_prime_UTR
CACCGACCACGTAACAATTA+TGG 0.281055 3_2:+89131948 Msa0435790:CDS
TACCCAATTCTGCTTATTTA+GGG 0.284773 3_2:+89132069 Msa0435790:CDS
ATCAGTTGCCCCACCATTTC+CGG 0.285643 3_2:+89131788 Msa0435790:CDS
CTCTGAGTGCATCCTATGTT+GGG 0.291781 3_2:-89132027 None:intergenic
CAGAATCAGAAAACCCTAAT+TGG 0.301882 3_2:+89130822 Msa0435790:five_prime_UTR
CCATCAACCAAGAAAGTATT+AGG 0.314044 3_2:-89131825 None:intergenic
AACAAATAGCCATATCAAAT+TGG 0.315123 3_2:-89130722 None:intergenic
TGAGGTGAGTTTGATGTAAC+AGG 0.317418 3_2:-89131561 None:intergenic
GGGGTCCAAGATCACCAGTT+GGG 0.322742 3_2:+89131877 Msa0435790:CDS
AGACCCTAAATAAGCAGAAT+TGG 0.323751 3_2:-89132072 None:intergenic
GAACCAACTTGTTGGTAAAC+AGG 0.337799 3_2:-89136814 None:intergenic
GGAGGAGGAGGAAGAGGAAG+AGG 0.337961 3_2:+89130597 Msa0435790:five_prime_UTR
CTAAATCATGCAGGGTTTCA+TGG 0.339707 3_2:+89132113 Msa0435790:CDS
CTAATACTTTCTTGGTTGAT+GGG 0.343601 3_2:+89131826 Msa0435790:CDS
TTTGAGTATTATACTGGGTG+GGG 0.349253 3_2:-89132328 None:intergenic
CATTCCGATGCTACCACAAA+TGG 0.361445 3_2:+89136925 Msa0435790:CDS
ATTCATCAAGTTATTTCAAT+TGG 0.366618 3_2:-89137292 None:intergenic
GGAGGGGAATGAAATGGATT+AGG 0.368803 3_2:-89130701 None:intergenic
TCTCGGCTCTCTATACAGTT+AGG 0.376723 3_2:+89136979 Msa0435790:three_prime_UTR
GGGAAATTAGTGGTGGCGGC+AGG 0.376958 3_2:-89130883 None:intergenic
ACACTACAGTTTGAACCCTT+TGG 0.378283 3_2:+89132228 Msa0435790:CDS
AGTGGTGGCGGCAGGGTTAG+AGG 0.383996 3_2:-89130875 None:intergenic
AATGGATTAGGTTAGGATCT+TGG 0.389082 3_2:-89130689 None:intergenic
ACACAGTTAAATACTGTAAT+GGG 0.397833 3_2:-89137043 None:intergenic
CCTCTGAGTGCATCCTATGT+TGG 0.399395 3_2:-89132028 None:intergenic
GGGATCTGAAGCACCGGAAA+TGG 0.408585 3_2:-89131801 None:intergenic
CCTTGCTTCTCCGTGGGCCC+TGG 0.409410 3_2:+89130915 Msa0435790:CDS
CAAATTGGAGGGGAATGAAA+TGG 0.412209 3_2:-89130707 None:intergenic
CAGTCTTACAAGAACAATAA+TGG 0.412662 3_2:+89131852 Msa0435790:CDS
TTTAACAAATAAGAATTTCA+AGG 0.420041 3_2:+89137155 Msa0435790:three_prime_UTR
ATTGTTAATCTTATTAGCAT+TGG 0.422357 3_2:-89131085 None:intergenic
GTAGTAACCATTGCCAATTA+GGG 0.425206 3_2:-89130835 None:intergenic
TGAGAACCTAACCTGAGAAA+TGG 0.428381 3_2:-89131268 None:intergenic
GTTAAATACTGTAATGGGTT+AGG 0.438615 3_2:-89137038 None:intergenic
GGAATGAAATGGATTAGGTT+AGG 0.439541 3_2:-89130696 None:intergenic
TTGCCTCCTCCGCACTTCAT+CGG 0.441294 3_2:-89131672 None:intergenic
CGGATCAATCTCCATTTCTC+AGG 0.443245 3_2:+89131257 Msa0435790:CDS
TCTACGACAACAGCAGCAAC+TGG 0.444818 3_2:-89131051 None:intergenic
CGTAAATCAGGAGGAGGAGG+AGG 0.445396 3_2:+89130585 Msa0435790:five_prime_UTR
TTGAACTAGAACCAACTTGT+TGG 0.449234 3_2:-89136822 None:intergenic
ATTGAGAAATTCGTCGGTTG+TGG 0.449624 3_2:+89133114 Msa0435790:CDS
AACACAGTTAAATACTGTAA+TGG 0.449968 3_2:-89137044 None:intergenic
GACTGCGGCGGAGGAGGTGG+TGG 0.453171 3_2:-89130994 None:intergenic
ACAGACTGCGGCGGAGGAGG+TGG 0.456229 3_2:-89130997 None:intergenic
ATTCCGATGCTACCACAAAT+GGG 0.457299 3_2:+89136926 Msa0435790:CDS
ACACTATGACTGTGATTCAT+TGG 0.461539 3_2:-89131633 None:intergenic
CAATGAATCTAGTATCAATT+CGG 0.464214 3_2:-89133095 None:intergenic
CTGTGACTGTGCTCATCTAC+AGG 0.466785 3_2:-89131912 None:intergenic
TGATTTAGAAACGGTCTCAT+AGG 0.468183 3_2:-89132098 None:intergenic
CCGTGGGCCCTGGTTGTTCG+CGG 0.468990 3_2:+89130925 Msa0435790:CDS
GACTACTACCAAAATCGATC+CGG 0.470101 3_2:-89137116 None:intergenic
ATTGTTGAGTGGTTCGGAGG+GGG 0.470104 3_2:-89130965 None:intergenic
GAAGCTGATTAGAAATAGAA+AGG 0.471850 3_2:+89137202 Msa0435790:three_prime_UTR
CGCTCTGTGTTGTGTTGTTG+AGG 0.473478 3_2:+89130634 Msa0435790:five_prime_UTR
TCATGCAGAGTCCCCATTTG+TGG 0.474937 3_2:-89136938 None:intergenic
ATGTAATGGGTGCTGTCTCT+TGG 0.477582 3_2:+89131181 Msa0435790:CDS
GACCCTAAATAAGCAGAATT+GGG 0.478332 3_2:-89132071 None:intergenic
GGGTCCAAGATCACCAGTTG+GGG 0.478469 3_2:+89131878 Msa0435790:CDS
ATAGAGAGCCGAGACTAATA+GGG 0.483615 3_2:-89136970 None:intergenic
TGCTGAGGTCAGTCATGTAA+TGG 0.484210 3_2:+89131167 Msa0435790:CDS
AGCAGTAGTAGCAGTGGCAG+TGG 0.485486 3_2:-89131592 None:intergenic
CTCGGCTCTCTATACAGTTA+GGG 0.488398 3_2:+89136980 Msa0435790:three_prime_UTR
ACATCTGCCGCCGACGGCGC+CGG 0.489546 3_2:+89131237 Msa0435790:CDS
GTTTGAGTATTATACTGGGT+GGG 0.490191 3_2:-89132329 None:intergenic
GAAGAAACAGACTGCGGCGG+AGG 0.492755 3_2:-89131003 None:intergenic
TTGAGTATTATACTGGGTGG+GGG 0.493759 3_2:-89132327 None:intergenic
CTTATCAAAATCAGCAGCTA+TGG 0.495850 3_2:-89136872 None:intergenic
CTTACAAGAACAATAATGGC+TGG 0.495911 3_2:+89131856 Msa0435790:CDS
GAAACAGACTGCGGCGGAGG+AGG 0.496713 3_2:-89131000 None:intergenic
CTGTAGATGAGCACAGTCAC+AGG 0.498458 3_2:+89131913 Msa0435790:CDS
CGAATCGATCGATCAGTGTA+TGG 0.498796 3_2:-89130760 None:intergenic
CGAATGATTGTTGAGTGGTT+CGG 0.499492 3_2:-89130971 None:intergenic
GGCCGTAAATCAGGAGGAGG+AGG 0.500002 3_2:+89130582 Msa0435790:five_prime_UTR
AAACCGATGAAGTGCGGAGG+AGG 0.503921 3_2:+89131669 Msa0435790:CDS
ATCTGAAGCACCGGAAATGG+TGG 0.504368 3_2:-89131798 None:intergenic
CCGCGAACAACCAGGGCCCA+CGG 0.506974 3_2:-89130925 None:intergenic
TGGTTCTAGTTCAATATCCT+CGG 0.507096 3_2:+89136831 Msa0435790:CDS
TAATACTTTCTTGGTTGATG+GGG 0.509151 3_2:+89131827 Msa0435790:CDS
CTACAGTTTGAACCCTTTGG+AGG 0.509856 3_2:+89132231 Msa0435790:CDS
GTTGATGATTAGCTTGAGGA+GGG 0.509914 3_2:-89131740 None:intergenic
ATGCTCATGCACCCCAACAT+AGG 0.513506 3_2:+89132015 Msa0435790:CDS
GAAGGCTTAGCAGACAAAGC+AGG 0.514228 3_2:-89131204 None:intergenic
TGGGGTCCAAGATCACCAGT+TGG 0.515396 3_2:+89131876 Msa0435790:CDS
TCTAGTTCAATATCCTCGGT+TGG 0.517388 3_2:+89136835 Msa0435790:CDS
GGAAATTAGTGGTGGCGGCA+GGG 0.517875 3_2:-89130882 None:intergenic
CTGAGAAATGGAGATTGATC+CGG 0.518648 3_2:-89131256 None:intergenic
GGCGATGTTCTTTCCAGTTG+CGG 0.519004 3_2:+89132284 Msa0435790:CDS
AGAATTTCAAGGAATTATGC+TGG 0.521491 3_2:+89137166 Msa0435790:three_prime_UTR
ACTAGGCGCAATCAAGATCC+AGG 0.521819 3_2:+89131972 Msa0435790:CDS
AAGGGTTCAAACTGTAGTGT+TGG 0.523768 3_2:-89132225 None:intergenic
GGGTTAGGTATCGTTGGTTG+AGG 0.523831 3_2:-89137023 None:intergenic
AGACCGTTTCTAAATCATGC+AGG 0.525522 3_2:+89132104 Msa0435790:CDS
TCTGAAGCACCGGAAATGGT+GGG 0.527413 3_2:-89131797 None:intergenic
GGAGATTGATCCGGCGCCGT+CGG 0.528766 3_2:-89131247 None:intergenic
GCTGAGGTCAGTCATGTAAT+GGG 0.530024 3_2:+89131168 Msa0435790:CDS
GGAGGTGCATGGGTCAAGAA+TGG 0.530944 3_2:-89132258 None:intergenic
GAACATGGACGTACATGGTT+GGG 0.531456 3_2:+89132491 Msa0435790:CDS
CTTGACCCATGCACCTCCTC+CGG 0.533926 3_2:+89132263 Msa0435790:CDS
AGTCAGCACCGCGAACAACC+AGG 0.536237 3_2:-89130933 None:intergenic
CTCAGCAACAACGAGGCCAT+TGG 0.537095 3_2:-89131151 None:intergenic
TGTAATGGGTTAGGTATCGT+TGG 0.537508 3_2:-89137029 None:intergenic
CAAGAATGGCATACCTCCAA+AGG 0.537670 3_2:-89132244 None:intergenic
GTGGCAGTGGCTTGTTTCTG+AGG 0.537783 3_2:-89131579 None:intergenic
TTGGATGTGTTCTTCCAAGC+GGG 0.538830 3_2:-89131132 None:intergenic
GGAAAGAACATCGCCGGAGG+AGG 0.542029 3_2:-89132276 None:intergenic
TAAGCAGAATTGGGTAGTGT+AGG 0.542293 3_2:-89132062 None:intergenic
AATAGCCATATCAAATTGGA+GGG 0.543805 3_2:-89130718 None:intergenic
TTACAAGAACAATAATGGCT+GGG 0.544623 3_2:+89131857 Msa0435790:CDS
TGATTGTTGAGTGGTTCGGA+GGG 0.545440 3_2:-89130967 None:intergenic
AACAACAATAACAATAAGCC+TGG 0.545616 3_2:+89131693 Msa0435790:CDS
AAATAGCCATATCAAATTGG+AGG 0.551529 3_2:-89130719 None:intergenic
GACAACAGCAGCAACTGGAT+TGG 0.551541 3_2:-89131046 None:intergenic
AAATTCACATCTGCCGCCGA+CGG 0.552576 3_2:+89131231 Msa0435790:CDS
CATCGCCGGAGGAGGTGCAT+GGG 0.552718 3_2:-89132268 None:intergenic
TGCCATAATTGTTACGTGGT+CGG 0.554214 3_2:-89131950 None:intergenic
CAATGGCCTCGTTGTTGCTG+AGG 0.555953 3_2:+89131152 Msa0435790:CDS
ACATCGCCGGAGGAGGTGCA+TGG 0.556853 3_2:-89132269 None:intergenic
ATGATTGTTGAGTGGTTCGG+AGG 0.557085 3_2:-89130968 None:intergenic
AACAGATACAGAAAGGATTG+AGG 0.557754 3_2:-89130789 None:intergenic
TGCATTAGCAGTAGTAGCAG+TGG 0.558691 3_2:-89131598 None:intergenic
AGATTCATTGAGAAATTCGT+CGG 0.559155 3_2:+89133108 Msa0435790:CDS
AACCAACTTGTTGGTAAACA+GGG 0.560006 3_2:-89136813 None:intergenic
GTCCCCATTTGTGGTAGCAT+CGG 0.561148 3_2:-89136929 None:intergenic
CGAACATGGACGTACATGGT+TGG 0.562791 3_2:+89132490 Msa0435790:CDS
AACCCTGCATGATTTAGAAA+CGG 0.566377 3_2:-89132107 None:intergenic
GGAAATGGTGGGGCAACTGA+TGG 0.566400 3_2:-89131786 None:intergenic
CTATGACTGTGATTCATTGG+AGG 0.570095 3_2:-89131630 None:intergenic
GTCAGCACCGCGAACAACCA+GGG 0.571771 3_2:-89130932 None:intergenic
GATTGATCCGGCGCCGTCGG+CGG 0.571790 3_2:-89131244 None:intergenic
TGTTTGAGTATTATACTGGG+TGG 0.577057 3_2:-89132330 None:intergenic
GGTTGATGATTAGCTTGAGG+AGG 0.577308 3_2:-89131741 None:intergenic
GACCGTTTCTAAATCATGCA+GGG 0.578959 3_2:+89132105 Msa0435790:CDS
GGTTAGGATCTTGGTTGCAG+AGG 0.580513 3_2:-89130680 None:intergenic
AAACTGTTTGACAAAGGACC+AGG 0.581251 3_2:-89131711 None:intergenic
GGAAGCGTAACGAGTGGGAG+AGG 0.581819 3_2:+89136782 Msa0435790:CDS
AAGTCGAACATGGACGTACA+TGG 0.581879 3_2:+89132486 Msa0435790:CDS
TCGCGGGAAATTAGTGGTGG+CGG 0.582579 3_2:-89130887 None:intergenic
CAGAAAACCCTAATTGGCAA+TGG 0.583339 3_2:+89130828 Msa0435790:exon
TGAATTTCTGAAGTCGAACA+TGG 0.583831 3_2:+89132476 Msa0435790:CDS
GGTGGGGCAACTGATGGTAA+TGG 0.584121 3_2:-89131780 None:intergenic
TCAACCAAGAAAGTATTAGG+AGG 0.585476 3_2:-89131822 None:intergenic
GATTGTTGAGTGGTTCGGAG+GGG 0.590508 3_2:-89130966 None:intergenic
TACAAGAACAATAATGGCTG+GGG 0.593744 3_2:+89131858 Msa0435790:CDS
ACTACTACCAAAATCGATCC+GGG 0.594331 3_2:-89137115 None:intergenic
AAATGAAAACAGATACAGAA+AGG 0.594842 3_2:-89130796 None:intergenic
CTCTCTATACAGTTAGGGAG+CGG 0.595911 3_2:+89136985 Msa0435790:three_prime_UTR
CGTCGTCGCCCTATTAGTCT+CGG 0.600443 3_2:+89136962 Msa0435790:three_prime_UTR
TCAATTCTTTCATGACCACC+CGG 0.602625 3_2:+89137097 Msa0435790:three_prime_UTR
CACGTAACAATTATGGCACT+AGG 0.604057 3_2:+89131955 Msa0435790:CDS
ACCAACTTGTTGGTAAACAG+GGG 0.605768 3_2:-89136812 None:intergenic
TTAGGAGGGATCTGAAGCAC+CGG 0.606069 3_2:-89131807 None:intergenic
TGTAGATGAGCACAGTCACA+GGG 0.606668 3_2:+89131914 Msa0435790:CDS
AAGAATGGCATACCTCCAAA+GGG 0.609464 3_2:-89132243 None:intergenic
ATTTGTTTGAGTATTATACT+GGG 0.612856 3_2:-89132333 None:intergenic
TCAAGCTAATCATCAACCAT+CGG 0.617009 3_2:+89131746 Msa0435790:CDS
CAACCAAGAAAGTATTAGGA+GGG 0.617242 3_2:-89131821 None:intergenic
TGCTAATAAGATTAACAATG+TGG 0.619351 3_2:+89131089 Msa0435790:CDS
AGGGGCCGTAAATCAGGAGG+AGG 0.622009 3_2:+89130579 Msa0435790:five_prime_UTR
TTAGATAAACTGTTTGACAA+AGG 0.624128 3_2:-89131717 None:intergenic
GCAGATGTGAATTTAGCAGA+AGG 0.624192 3_2:-89131222 None:intergenic
GCAACTGGAAAGAACATCGC+CGG 0.624737 3_2:-89132282 None:intergenic
CAACATAGGATGCACTCAGA+GGG 0.624890 3_2:+89132029 Msa0435790:CDS
GATGGTTGATGATTAGCTTG+AGG 0.626712 3_2:-89131744 None:intergenic
TGCTACAGGGTGACAAACTG+AGG 0.627343 3_2:+89136761 Msa0435790:intron
GGGGCAACTGATGGTAATGG+TGG 0.628216 3_2:-89131777 None:intergenic
GCTTGGAAGAACACATCCAA+TGG 0.629040 3_2:+89131135 Msa0435790:CDS
ATTGGATGTGTTCTTCCAAG+CGG 0.629682 3_2:-89131133 None:intergenic
AGAGGAAGAGGAAGAAACCA+TGG 0.631822 3_2:+89130609 Msa0435790:five_prime_UTR
TTGAGGGGCCGTAAATCAGG+AGG 0.640483 3_2:+89130576 Msa0435790:five_prime_UTR
CCAGGGCCCACGGAGAAGCA+AGG 0.642878 3_2:-89130915 None:intergenic
TGAGGAGAGTGACAACAAGA+TGG 0.643648 3_2:+89130652 Msa0435790:five_prime_UTR
AGAGGAAGAATCAGATGCGG+TGG 0.644649 3_2:-89130857 None:intergenic
CTGAAGCACCGGAAATGGTG+GGG 0.644787 3_2:-89131796 None:intergenic
AACTGAGGAAGCGTAACGAG+TGG 0.649197 3_2:+89136776 Msa0435790:CDS
TCTGAGTGCATCCTATGTTG+GGG 0.651711 3_2:-89132026 None:intergenic
ACTGAGGAAGCGTAACGAGT+GGG 0.652678 3_2:+89136777 Msa0435790:CDS
AATGAATCACAGTCATAGTG+TGG 0.656978 3_2:+89131635 Msa0435790:CDS
ACACAACACAGAGCGAGCCA+TGG 0.657051 3_2:-89130626 None:intergenic
TTCCGATGCTACCACAAATG+GGG 0.657668 3_2:+89136927 Msa0435790:CDS
ATAGCCATATCAAATTGGAG+GGG 0.660946 3_2:-89130717 None:intergenic
ACTGGAAAGAACATCGCCGG+AGG 0.679526 3_2:-89132279 None:intergenic
CTAGTGCCATAATTGTTACG+TGG 0.680732 3_2:-89131954 None:intergenic
CCAACATAGGATGCACTCAG+AGG 0.684182 3_2:+89132028 Msa0435790:CDS
GATGAAGAAACAGACTGCGG+CGG 0.690295 3_2:-89131006 None:intergenic
TGCACTCAGAGGGATTTCAG+AGG 0.694637 3_2:+89132039 Msa0435790:CDS
AATGGTGGAGCAACAACCGA+TGG 0.696205 3_2:-89131762 None:intergenic
GGTGGCGAATGATTGTTGAG+TGG 0.707953 3_2:-89130976 None:intergenic
CCAACTTGTTGGTAAACAGG+GGG 0.710113 3_2:-89136811 None:intergenic
ATTGCAAGTTGAACCAACCG+AGG 0.711514 3_2:-89136848 None:intergenic
GACTGACCTCAGCAACAACG+AGG 0.728171 3_2:-89131158 None:intergenic
GTTAGAGGAAGAATCAGATG+CGG 0.735060 3_2:-89130860 None:intergenic
GGTCCAAGATCACCAGTTGG+GGG 0.749871 3_2:+89131879 Msa0435790:CDS
GTAGATGAGCACAGTCACAG+GGG 0.763813 3_2:+89131915 Msa0435790:CDS
ACTACCAAAATCGATCCGGG+TGG 0.769987 3_2:-89137112 None:intergenic
GATGATGAAGAAACAGACTG+CGG 0.774638 3_2:-89131009 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATAATTGATTTGTTTTT+TGG + chr3_2:89131377-89131396 Msa0435790:intron 10.0%
!!! AACAAATTGATTATTATTTT+AGG + chr3_2:89132349-89132368 Msa0435790:CDS 10.0%
!!! TATATTTTTTTTTTTTTTGC+AGG + chr3_2:89133051-89133070 Msa0435790:intron 10.0%
!!! TTGTTTTTTTTAAAAAAAAG+TGG - chr3_2:89133913-89133932 None:intergenic 10.0%
!!! ATAAGTTGTTTTTTAAAATA+AGG - chr3_2:89134811-89134830 None:intergenic 10.0%
!!! TAAAATTTTCTAATATTGAT+CGG - chr3_2:89134186-89134205 None:intergenic 10.0%
!!! ATAAGTTGTTTTTTAAAATA+AGG + chr3_2:89134811-89134830 Msa0435790:intron 10.0%
!!! TTTTAAATAAGTTGTTTTTT+TGG + chr3_2:89134639-89134658 Msa0435790:intron 10.0%
!! AAAAACTGTTAATAAATTAA+CGG + chr3_2:89135127-89135146 Msa0435790:intron 10.0%
!! ATGATGTATAATATAAATTA+GGG - chr3_2:89135243-89135262 None:intergenic 10.0%
!!! TTTTAAATTTCATTTGAAAA+AGG + chr3_2:89135644-89135663 Msa0435790:intron 10.0%
!! AAATGAACAAAAACATAATT+AGG - chr3_2:89131304-89131323 None:intergenic 15.0%
!!! AATAGAATTCTAAAAAGAAA+AGG - chr3_2:89132200-89132219 None:intergenic 15.0%
!! AAAATGTTATGTAAATACAA+GGG - chr3_2:89133257-89133276 None:intergenic 15.0%
!!! TTTACATAACATTTTGAAAT+TGG + chr3_2:89133262-89133281 Msa0435790:intron 15.0%
!!! TATCAAATATTTCTATTTGA+AGG + chr3_2:89133560-89133579 Msa0435790:intron 15.0%
!!! ATCAAATATTTCTATTTGAA+GGG + chr3_2:89133561-89133580 Msa0435790:intron 15.0%
!!! AAAAAATATTTGTTTTGGTT+TGG - chr3_2:89133875-89133894 None:intergenic 15.0%
!!! TGGATAAAAAATATTTGTTT+TGG - chr3_2:89133880-89133899 None:intergenic 15.0%
!!! GAAATTTTATCATTATGTTT+TGG - chr3_2:89134259-89134278 None:intergenic 15.0%
!!! ATAAGCTGTTTTTTAAAATA+AGG + chr3_2:89134678-89134697 Msa0435790:intron 15.0%
!!! CTTGAACTTTTTTTTTTTTA+AGG - chr3_2:89135051-89135070 None:intergenic 15.0%
!! TAAAAAAAAAAAAGTTCAAG+TGG + chr3_2:89135051-89135070 Msa0435790:intron 15.0%
!! TGATGTATAATATAAATTAG+GGG - chr3_2:89135242-89135261 None:intergenic 15.0%
!! CATGATGTATAATATAAATT+AGG - chr3_2:89135244-89135263 None:intergenic 15.0%
!!! GTGTTAGTATTAATTTTAAA+AGG + chr3_2:89137062-89137081 Msa0435790:three_prime_UTR 15.0%
!! TTTAACAAATAAGAATTTCA+AGG + chr3_2:89137155-89137174 Msa0435790:three_prime_UTR 15.0%
!! ATTGTTAATCTTATTAGCAT+TGG - chr3_2:89131088-89131107 None:intergenic 20.0%
!!! TAATTGATTTGTTTTTTGGA+TGG + chr3_2:89131381-89131400 Msa0435790:intron 20.0%
!! TTGTGATTATCTTGAAAAAA+TGG + chr3_2:89131416-89131435 Msa0435790:intron 20.0%
!! ATTTGTTTGAGTATTATACT+GGG - chr3_2:89132336-89132355 None:intergenic 20.0%
!!! AATTTGTTTGAGTATTATAC+TGG - chr3_2:89132337-89132356 None:intergenic 20.0%
!!! TTTTGATAGTGATGTTAATT+TGG + chr3_2:89132446-89132465 Msa0435790:intron 20.0%
!! AAATTTGCAATCAAAGAAAT+TGG - chr3_2:89132519-89132538 None:intergenic 20.0%
!!! ATTGTTCTATTGTATTTTCT+AGG + chr3_2:89133155-89133174 Msa0435790:intron 20.0%
!! CAAAATGTTATGTAAATACA+AGG - chr3_2:89133258-89133277 None:intergenic 20.0%
!! AAATATTTGATAAGTTCTGT+TGG - chr3_2:89133552-89133571 None:intergenic 20.0%
!!! CAACTCACTTTTAATTTTTA+AGG + chr3_2:89133662-89133681 Msa0435790:intron 20.0%
!!! AAAAAAGTGGTTTTATTCAT+TGG - chr3_2:89133900-89133919 None:intergenic 20.0%
!!! AAACAACTTATTTTCATTTC+AGG + chr3_2:89134024-89134043 Msa0435790:intron 20.0%
!!! AACAACTTATTTTCATTTCA+GGG + chr3_2:89134025-89134044 Msa0435790:intron 20.0%
!!! AGAAAATTTTAATCCATCTA+TGG + chr3_2:89134195-89134214 Msa0435790:intron 20.0%
!! ATCAAGAATTTCATTTGAAA+TGG + chr3_2:89135670-89135689 Msa0435790:intron 20.0%
!!! AAATATTTGTTTGGAATGTA+TGG - chr3_2:89135945-89135964 None:intergenic 20.0%
!! AAATCTAGCAAATATTTGTT+TGG - chr3_2:89135954-89135973 None:intergenic 20.0%
!!! GAATATGTTTGATTTTCTTT+TGG - chr3_2:89136042-89136061 None:intergenic 20.0%
!!! ATTTCCAATATCTTCTTTTA+GGG + chr3_2:89136142-89136161 Msa0435790:intron 20.0%
!!! TTTACTTAACCTTTTGAAAT+TGG - chr3_2:89136541-89136560 None:intergenic 20.0%
!! AAAAGGTTAAGTAAATACAA+GGG + chr3_2:89136546-89136565 Msa0435790:intron 20.0%
!! AATAGGCTTAAATAAGTAAA+AGG - chr3_2:89136632-89136651 None:intergenic 20.0%
!!! GGAAAATTTTAGAATTTTGA+CGG + chr3_2:89137223-89137242 Msa0435790:three_prime_UTR 20.0%
! AACAAATAGCCATATCAAAT+TGG - chr3_2:89130725-89130744 None:intergenic 25.0%
! AAATGAAAACAGATACAGAA+AGG - chr3_2:89130799-89130818 None:intergenic 25.0%
! TGCTAATAAGATTAACAATG+TGG + chr3_2:89131089-89131108 Msa0435790:CDS 25.0%
! TGAACAAAAACATAATTAGG+AGG - chr3_2:89131301-89131320 None:intergenic 25.0%
! TGATTATCTTGAAAAAATGG+TGG + chr3_2:89131419-89131438 Msa0435790:intron 25.0%
! ATGACATTAGAACTAATCTA+TGG + chr3_2:89131447-89131466 Msa0435790:intron 25.0%
! ATCTATGGAATAATAATGAG+AGG + chr3_2:89131462-89131481 Msa0435790:intron 25.0%
!!! TAATAATGAGAGGTGTTTAT+AGG + chr3_2:89131472-89131491 Msa0435790:intron 25.0%
!!! TTTTCGCTGTTATTTTTGTA+GGG + chr3_2:89131537-89131556 Msa0435790:intron 25.0%
! TTAGATAAACTGTTTGACAA+AGG - chr3_2:89131720-89131739 None:intergenic 25.0%
! GTAAGTTAATTGTAGTTCTT+TGG + chr3_2:89132546-89132565 Msa0435790:intron 25.0%
! ATCATACATGTATACTATGT+CGG + chr3_2:89132583-89132602 Msa0435790:intron 25.0%
!! TTTCATGATTGCGTAATTTT+AGG + chr3_2:89132664-89132683 Msa0435790:intron 25.0%
! AAAAAACTACCAAAAGCAAA+TGG - chr3_2:89132700-89132719 None:intergenic 25.0%
! CAATGAATCTAGTATCAATT+CGG - chr3_2:89133098-89133117 None:intergenic 25.0%
! TCTAGGCTTAAATAAGTAAA+AGG + chr3_2:89133172-89133191 Msa0435790:intron 25.0%
! CAAAAACGCATATTTACATA+GGG + chr3_2:89133365-89133384 Msa0435790:intron 25.0%
! AAAATAAGTTATGAGAGGAT+GGG - chr3_2:89133492-89133511 None:intergenic 25.0%
! TAAAATAAGTTATGAGAGGA+TGG - chr3_2:89133493-89133512 None:intergenic 25.0%
! TTCGTAAAATAAGTTATGAG+AGG - chr3_2:89133497-89133516 None:intergenic 25.0%
! AGGAAACTAGCATTTATATT+AGG + chr3_2:89133682-89133701 Msa0435790:intron 25.0%
! GGAAACTAGCATTTATATTA+GGG + chr3_2:89133683-89133702 Msa0435790:intron 25.0%
! GAAACTAGCATTTATATTAG+GGG + chr3_2:89133684-89133703 Msa0435790:intron 25.0%
!!! ATATTTGTTTTGGTTTGGTT+CGG - chr3_2:89133870-89133889 None:intergenic 25.0%
!! TGAATTTTATGAGAATGACA+TGG + chr3_2:89134052-89134071 Msa0435790:intron 25.0%
! TAATATTGATCGGAAAACAA+TGG - chr3_2:89134176-89134195 None:intergenic 25.0%
! TTTAGTAATCAAACCATAGA+TGG - chr3_2:89134211-89134230 None:intergenic 25.0%
! ATCTATGGTTTGATTACTAA+AGG + chr3_2:89134210-89134229 Msa0435790:intron 25.0%
!!! ATCATTATGTTTTGGATCAT+CGG - chr3_2:89134251-89134270 None:intergenic 25.0%
! AAAAAAAAGTTCAAGTGGTT+TGG + chr3_2:89135056-89135075 Msa0435790:intron 25.0%
! CTGTTAATAAATTAACGGTT+CGG + chr3_2:89135132-89135151 Msa0435790:intron 25.0%
! AAATAACCGAACCATTATAA+TGG - chr3_2:89135166-89135185 None:intergenic 25.0%
!!! TATAATGGTTCGGTTATTTT+TGG + chr3_2:89135167-89135186 Msa0435790:intron 25.0%
! GTATAATATAAATTAGGGGT+GGG - chr3_2:89135238-89135257 None:intergenic 25.0%
! TGTATAATATAAATTAGGGG+TGG - chr3_2:89135239-89135258 None:intergenic 25.0%
!!! TGGCTTGTTTTAATTATTGA+GGG - chr3_2:89135495-89135514 None:intergenic 25.0%
! AATCTTCAATGGATCATTAA+TGG + chr3_2:89135607-89135626 Msa0435790:intron 25.0%
! ATAATCACTTACAAAAGTTG+AGG - chr3_2:89135699-89135718 None:intergenic 25.0%
! TTTGTAAGTGATTATTGTGT+TGG + chr3_2:89135704-89135723 Msa0435790:intron 25.0%
!!! TGGATTAGTTTAGAAAGAAA+AGG + chr3_2:89135724-89135743 Msa0435790:intron 25.0%
!!! GGATTAGTTTAGAAAGAAAA+GGG + chr3_2:89135725-89135744 Msa0435790:intron 25.0%
!! GAGTGTATATATACGTTTTT+AGG + chr3_2:89135859-89135878 Msa0435790:intron 25.0%
! TAGATTTAATAGTGAAGAAC+AGG + chr3_2:89135967-89135986 Msa0435790:intron 25.0%
!! CATTTCCAATATCTTCTTTT+AGG + chr3_2:89136141-89136160 Msa0435790:intron 25.0%
!!! ATTTTTTTGCAACCACATAT+TGG + chr3_2:89136198-89136217 Msa0435790:intron 25.0%
!!! ATTTGATGATGATTGACAAA+TGG + chr3_2:89136227-89136246 Msa0435790:intron 25.0%
! AAGACATTGTTTAAGGAAAT+GGG + chr3_2:89136256-89136275 Msa0435790:intron 25.0%
!! TCTATGTAAATATGCGTTTT+TGG + chr3_2:89136417-89136436 Msa0435790:intron 25.0%
! CAAAAGGTTAAGTAAATACA+AGG + chr3_2:89136545-89136564 Msa0435790:intron 25.0%
!! TTAAGCCTATTTTCTATTTG+TGG + chr3_2:89136641-89136660 Msa0435790:intron 25.0%
! ACACAGTTAAATACTGTAAT+GGG - chr3_2:89137046-89137065 None:intergenic 25.0%
! AACACAGTTAAATACTGTAA+TGG - chr3_2:89137047-89137066 None:intergenic 25.0%
AATAGCCATATCAAATTGGA+GGG - chr3_2:89130721-89130740 None:intergenic 30.0%
AAATAGCCATATCAAATTGG+AGG - chr3_2:89130722-89130741 None:intergenic 30.0%
!!! GTTTTCGCTGTTATTTTTGT+AGG + chr3_2:89131536-89131555 Msa0435790:intron 30.0%
!!! TTTCGCTGTTATTTTTGTAG+GGG + chr3_2:89131538-89131557 Msa0435790:intron 30.0%
AACAACAATAACAATAAGCC+TGG + chr3_2:89131693-89131712 Msa0435790:CDS 30.0%
CTAATACTTTCTTGGTTGAT+GGG + chr3_2:89131826-89131845 Msa0435790:CDS 30.0%
! TAATACTTTCTTGGTTGATG+GGG + chr3_2:89131827-89131846 Msa0435790:CDS 30.0%
CAGTCTTACAAGAACAATAA+TGG + chr3_2:89131852-89131871 Msa0435790:CDS 30.0%
TTACAAGAACAATAATGGCT+GGG + chr3_2:89131857-89131876 Msa0435790:CDS 30.0%
TACCCAATTCTGCTTATTTA+GGG + chr3_2:89132069-89132088 Msa0435790:CDS 30.0%
ACACATTACTATTTCAAGAC+AGG - chr3_2:89132395-89132414 None:intergenic 30.0%
TGTCTTGAAATAGTAATGTG+TGG + chr3_2:89132394-89132413 Msa0435790:intron 30.0%
GTCTTGAAATAGTAATGTGT+GGG + chr3_2:89132395-89132414 Msa0435790:intron 30.0%
AACTACAATTAACTTACTCG+CGG - chr3_2:89132543-89132562 None:intergenic 30.0%
TACGCAATCATGAAATCAAA+AGG - chr3_2:89132659-89132678 None:intergenic 30.0%
! TTCTCAAGTAAGTTGCTTTA+TGG - chr3_2:89132789-89132808 None:intergenic 30.0%
GAAATACTATCACCTAACAA+AGG + chr3_2:89132827-89132846 Msa0435790:intron 30.0%
! TTTTCTTCAACTCCTTTGTT+AGG - chr3_2:89132842-89132861 None:intergenic 30.0%
AGATTCATTGAGAAATTCGT+CGG + chr3_2:89133108-89133127 Msa0435790:CDS 30.0%
TCGCAACAAAAAAAGATACA+GGG - chr3_2:89133229-89133248 None:intergenic 30.0%
TTCGCAACAAAAAAAGATAC+AGG - chr3_2:89133230-89133249 None:intergenic 30.0%
! CCTATGTAAATATGCGTTTT+TGG - chr3_2:89133367-89133386 None:intergenic 30.0%
CCAAAAACGCATATTTACAT+AGG + chr3_2:89133364-89133383 Msa0435790:intron 30.0%
ATGGTTAATAGGTAAGCAAA+TGG - chr3_2:89133846-89133865 None:intergenic 30.0%
TATAGAAGGAACCTTTCTTT+CGG - chr3_2:89134397-89134416 None:intergenic 30.0%
ATAACCTAGTGTGATATAGA+AGG - chr3_2:89134411-89134430 None:intergenic 30.0%
TAAAAATACGACTTCTGTCA+AGG - chr3_2:89134472-89134491 None:intergenic 30.0%
AATTGCAACAGCAAATCAAA+GGG - chr3_2:89135418-89135437 None:intergenic 30.0%
AAATTGCAACAGCAAATCAA+AGG - chr3_2:89135419-89135438 None:intergenic 30.0%
!!! GTGGCTTGTTTTAATTATTG+AGG - chr3_2:89135496-89135515 None:intergenic 30.0%
TATAATTGTTCATGTTTGGG+TGG - chr3_2:89135515-89135534 None:intergenic 30.0%
ACCCAAACATGAACAATTAT+AGG + chr3_2:89135514-89135533 Msa0435790:intron 30.0%
CCCTATAATTGTTCATGTTT+GGG - chr3_2:89135518-89135537 None:intergenic 30.0%
CCCAAACATGAACAATTATA+GGG + chr3_2:89135515-89135534 Msa0435790:intron 30.0%
TCCCTATAATTGTTCATGTT+TGG - chr3_2:89135519-89135538 None:intergenic 30.0%
ATTATACTTGGTAGAACGTA+GGG - chr3_2:89135590-89135609 None:intergenic 30.0%
CTACCAAGTATAATCTTCAA+TGG + chr3_2:89135596-89135615 Msa0435790:intron 30.0%
GATCCATTGAAGATTATACT+TGG - chr3_2:89135602-89135621 None:intergenic 30.0%
ATTTAATAGTGAAGAACAGG+CGG + chr3_2:89135970-89135989 Msa0435790:intron 30.0%
TAACAACACACTCATCATAA+AGG + chr3_2:89136113-89136132 Msa0435790:intron 30.0%
ACAACCCTAAAAGAAGATAT+TGG - chr3_2:89136149-89136168 None:intergenic 30.0%
GTGGTTGCAAAAAAATTATG+AGG - chr3_2:89136194-89136213 None:intergenic 30.0%
GAATGAGAAGACATTGTTTA+AGG + chr3_2:89136249-89136268 Msa0435790:intron 30.0%
GAAGACATTGTTTAAGGAAA+TGG + chr3_2:89136255-89136274 Msa0435790:intron 30.0%
!! TGTTTAAGGAAATGGGTTTT+TGG + chr3_2:89136263-89136282 Msa0435790:intron 30.0%
TTCGCAACAAAAAAAGAAAC+AGG + chr3_2:89136573-89136592 Msa0435790:intron 30.0%
TCGCAACAAAAAAAGAAACA+GGG + chr3_2:89136574-89136593 Msa0435790:intron 30.0%
TTCCACCACAAATAGAAAAT+AGG - chr3_2:89136649-89136668 None:intergenic 30.0%
ATTATTCTGAACTTTGCTAC+AGG + chr3_2:89136747-89136766 Msa0435790:intron 30.0%
TTATTCTGAACTTTGCTACA+GGG + chr3_2:89136748-89136767 Msa0435790:intron 30.0%
!! GTTAAATACTGTAATGGGTT+AGG - chr3_2:89137041-89137060 None:intergenic 30.0%
AGAATTTCAAGGAATTATGC+TGG + chr3_2:89137166-89137185 Msa0435790:three_prime_UTR 30.0%
GAAGCTGATTAGAAATAGAA+AGG + chr3_2:89137202-89137221 Msa0435790:three_prime_UTR 30.0%
!! AATGGATTAGGTTAGGATCT+TGG - chr3_2:89130692-89130711 None:intergenic 35.0%
!! GGAATGAAATGGATTAGGTT+AGG - chr3_2:89130699-89130718 None:intergenic 35.0%
ATAGCCATATCAAATTGGAG+GGG - chr3_2:89130720-89130739 None:intergenic 35.0%
AACAGATACAGAAAGGATTG+AGG - chr3_2:89130792-89130811 None:intergenic 35.0%
CAGAATCAGAAAACCCTAAT+TGG + chr3_2:89130822-89130841 Msa0435790:five_prime_UTR 35.0%
GTAGTAACCATTGCCAATTA+GGG - chr3_2:89130838-89130857 None:intergenic 35.0%
ACACTATGACTGTGATTCAT+TGG - chr3_2:89131636-89131655 None:intergenic 35.0%
AATGAATCACAGTCATAGTG+TGG + chr3_2:89131635-89131654 Msa0435790:CDS 35.0%
TCAAGCTAATCATCAACCAT+CGG + chr3_2:89131746-89131765 Msa0435790:CDS 35.0%
!! CAACCAAGAAAGTATTAGGA+GGG - chr3_2:89131824-89131843 None:intergenic 35.0%
!! TCAACCAAGAAAGTATTAGG+AGG - chr3_2:89131825-89131844 None:intergenic 35.0%
!! CCATCAACCAAGAAAGTATT+AGG - chr3_2:89131828-89131847 None:intergenic 35.0%
CCTAATACTTTCTTGGTTGA+TGG + chr3_2:89131825-89131844 Msa0435790:CDS 35.0%
CTTACAAGAACAATAATGGC+TGG + chr3_2:89131856-89131875 Msa0435790:CDS 35.0%
TACAAGAACAATAATGGCTG+GGG + chr3_2:89131858-89131877 Msa0435790:CDS 35.0%
CTAGTGTTCATTGTATTTCC+TGG - chr3_2:89131993-89132012 None:intergenic 35.0%
CTACCCAATTCTGCTTATTT+AGG + chr3_2:89132068-89132087 Msa0435790:CDS 35.0%
GACCCTAAATAAGCAGAATT+GGG - chr3_2:89132074-89132093 None:intergenic 35.0%
AGACCCTAAATAAGCAGAAT+TGG - chr3_2:89132075-89132094 None:intergenic 35.0%
TGATTTAGAAACGGTCTCAT+AGG - chr3_2:89132101-89132120 None:intergenic 35.0%
AACCCTGCATGATTTAGAAA+CGG - chr3_2:89132110-89132129 None:intergenic 35.0%
! AAAGCATTAGTTGTGTCTTG+TGG - chr3_2:89132175-89132194 None:intergenic 35.0%
TTTGAGTATTATACTGGGTG+GGG - chr3_2:89132331-89132350 None:intergenic 35.0%
GTTTGAGTATTATACTGGGT+GGG - chr3_2:89132332-89132351 None:intergenic 35.0%
TGTTTGAGTATTATACTGGG+TGG - chr3_2:89132333-89132352 None:intergenic 35.0%
!! TGAATTTCTGAAGTCGAACA+TGG + chr3_2:89132476-89132495 Msa0435790:CDS 35.0%
ACTACAATTAACTTACTCGC+GGG - chr3_2:89132542-89132561 None:intergenic 35.0%
TTGTACTACCAAGTGCAAAT+AGG + chr3_2:89132967-89132986 Msa0435790:intron 35.0%
CTTGAAAACCTATTTGCACT+TGG - chr3_2:89132978-89132997 None:intergenic 35.0%
! ATACATGTCACTTGATGAGT+TGG + chr3_2:89133316-89133335 Msa0435790:intron 35.0%
TCTATTTGAAGGGTCTTCAA+AGG + chr3_2:89133571-89133590 Msa0435790:intron 35.0%
TTCTAACTGCAGTTCTTGTA+TGG + chr3_2:89133630-89133649 Msa0435790:intron 35.0%
ACTAGCATTTATATTAGGGG+TGG + chr3_2:89133687-89133706 Msa0435790:intron 35.0%
CTAGCATTTATATTAGGGGT+GGG + chr3_2:89133688-89133707 Msa0435790:intron 35.0%
ACCATTTCAAAATTCCGGTT+CGG - chr3_2:89133752-89133771 None:intergenic 35.0%
!!! ACCGGAATTTTGAAATGGTT+CGG + chr3_2:89133753-89133772 Msa0435790:intron 35.0%
! ACCATAACTTTGGTTCAGTT+CGG - chr3_2:89133815-89133834 None:intergenic 35.0%
ACTGAACCAAAGTTATGGTT+TGG + chr3_2:89133816-89133835 Msa0435790:intron 35.0%
GGTTAACCAAACCATAACTT+TGG - chr3_2:89133825-89133844 None:intergenic 35.0%
!! TTTGGTTCGGTATGGTTAAT+AGG - chr3_2:89133857-89133876 None:intergenic 35.0%
TCATTCAGTGAAATGCCATA+AGG + chr3_2:89134308-89134327 Msa0435790:intron 35.0%
CATTCAGTGAAATGCCATAA+GGG + chr3_2:89134309-89134328 Msa0435790:intron 35.0%
TGATATGCCAAAGTTAACGA+GGG + chr3_2:89134343-89134362 Msa0435790:intron 35.0%
AAACCACTTGAACTCTTTGT+TGG - chr3_2:89135028-89135047 None:intergenic 35.0%
!! AAAGTTCAAGTGGTTTGGTT+CGG + chr3_2:89135061-89135080 Msa0435790:intron 35.0%
CGTGAACCATTATAATGGTT+CGG + chr3_2:89135157-89135176 Msa0435790:intron 35.0%
!!! TGGTTCGGTTATTTTTGGTT+CGG + chr3_2:89135172-89135191 Msa0435790:intron 35.0%
GATTATACTTGGTAGAACGT+AGG - chr3_2:89135591-89135610 None:intergenic 35.0%
GGATCATTAATGGCTAAAGA+TGG + chr3_2:89135617-89135636 Msa0435790:intron 35.0%
AGAGGTTGGAAGAGAAAAAA+AGG + chr3_2:89135761-89135780 Msa0435790:intron 35.0%
TTTAATAGTGAAGAACAGGC+GGG + chr3_2:89135971-89135990 Msa0435790:intron 35.0%
ATATGCAGCTATAACATGTG+CGG + chr3_2:89136004-89136023 Msa0435790:intron 35.0%
AACACACTCATCATAAAGGT+TGG + chr3_2:89136117-89136136 Msa0435790:intron 35.0%
! TTTAGGGTTGTCATGTGAAT+TGG + chr3_2:89136158-89136177 Msa0435790:intron 35.0%
TCAAATGAGTTGCCAATATG+TGG - chr3_2:89136213-89136232 None:intergenic 35.0%
!!! GAAATGGGTTTTTGGTGTTA+GGG + chr3_2:89136271-89136290 Msa0435790:intron 35.0%
AAAAGAGAAAGAACAGAGTG+AGG + chr3_2:89136331-89136350 Msa0435790:intron 35.0%
! AGCCTATTTTCTATTTGTGG+TGG + chr3_2:89136644-89136663 Msa0435790:intron 35.0%
! TCTATTTGTGGTGGAAGTAT+AGG + chr3_2:89136653-89136672 Msa0435790:intron 35.0%
!! AACCAACTTGTTGGTAAACA+GGG - chr3_2:89136816-89136835 None:intergenic 35.0%
TTGAACTAGAACCAACTTGT+TGG - chr3_2:89136825-89136844 None:intergenic 35.0%
!! TGGTTCTAGTTCAATATCCT+CGG + chr3_2:89136831-89136850 Msa0435790:CDS 35.0%
CTTATCAAAATCAGCAGCTA+TGG - chr3_2:89136875-89136894 None:intergenic 35.0%
CAAATTGGAGGGGAATGAAA+TGG - chr3_2:89130710-89130729 None:intergenic 40.0%
CATTCCCCTCCAATTTGATA+TGG + chr3_2:89130713-89130732 Msa0435790:five_prime_UTR 40.0%
CAGAAAACCCTAATTGGCAA+TGG + chr3_2:89130828-89130847 Msa0435790:exon 40.0%
GGTAGTAACCATTGCCAATT+AGG - chr3_2:89130839-89130858 None:intergenic 40.0%
GTTAGAGGAAGAATCAGATG+CGG - chr3_2:89130863-89130882 None:intergenic 40.0%
!!! GTTTTTTCGCGGGAAATTAG+TGG - chr3_2:89130896-89130915 None:intergenic 40.0%
AAAAAACCTTGCTTCTCCGT+GGG + chr3_2:89130909-89130928 Msa0435790:CDS 40.0%
CGAATGATTGTTGAGTGGTT+CGG - chr3_2:89130974-89130993 None:intergenic 40.0%
GATGATGAAGAAACAGACTG+CGG - chr3_2:89131012-89131031 None:intergenic 40.0%
!!! TCTTCCAAGCGGGTTTTTTA+GGG - chr3_2:89131125-89131144 None:intergenic 40.0%
!!! TTCTTCCAAGCGGGTTTTTT+AGG - chr3_2:89131126-89131145 None:intergenic 40.0%
ATTGGATGTGTTCTTCCAAG+CGG - chr3_2:89131136-89131155 None:intergenic 40.0%
GCAGATGTGAATTTAGCAGA+AGG - chr3_2:89131225-89131244 None:intergenic 40.0%
CTGAGAAATGGAGATTGATC+CGG - chr3_2:89131259-89131278 None:intergenic 40.0%
CAATCTCCATTTCTCAGGTT+AGG + chr3_2:89131262-89131281 Msa0435790:intron 40.0%
TGAGAACCTAACCTGAGAAA+TGG - chr3_2:89131271-89131290 None:intergenic 40.0%
CTCAGGTTAGGTTCTCATAA+CGG + chr3_2:89131274-89131293 Msa0435790:intron 40.0%
TGAGGTGAGTTTGATGTAAC+AGG - chr3_2:89131564-89131583 None:intergenic 40.0%
CTATGACTGTGATTCATTGG+AGG - chr3_2:89131633-89131652 None:intergenic 40.0%
AGACAAAAACCGATGAAGTG+CGG + chr3_2:89131663-89131682 Msa0435790:CDS 40.0%
AAACTGTTTGACAAAGGACC+AGG - chr3_2:89131714-89131733 None:intergenic 40.0%
!! GTTGATGATTAGCTTGAGGA+GGG - chr3_2:89131743-89131762 None:intergenic 40.0%
!! GATGGTTGATGATTAGCTTG+AGG - chr3_2:89131747-89131766 None:intergenic 40.0%
GATCCCTCCTAATACTTTCT+TGG + chr3_2:89131818-89131837 Msa0435790:CDS 40.0%
! ACAGTCACAGGGGTAATTTT+GGG + chr3_2:89131925-89131944 Msa0435790:CDS 40.0%
TGCCATAATTGTTACGTGGT+CGG - chr3_2:89131953-89131972 None:intergenic 40.0%
CTAGTGCCATAATTGTTACG+TGG - chr3_2:89131957-89131976 None:intergenic 40.0%
CACGTAACAATTATGGCACT+AGG + chr3_2:89131955-89131974 Msa0435790:CDS 40.0%
TAAGCAGAATTGGGTAGTGT+AGG - chr3_2:89132065-89132084 None:intergenic 40.0%
AGACCGTTTCTAAATCATGC+AGG + chr3_2:89132104-89132123 Msa0435790:CDS 40.0%
GACCGTTTCTAAATCATGCA+GGG + chr3_2:89132105-89132124 Msa0435790:CDS 40.0%
CTAAATCATGCAGGGTTTCA+TGG + chr3_2:89132113-89132132 Msa0435790:CDS 40.0%
AAGGGTTCAAACTGTAGTGT+TGG - chr3_2:89132228-89132247 None:intergenic 40.0%
ACACTACAGTTTGAACCCTT+TGG + chr3_2:89132228-89132247 Msa0435790:CDS 40.0%
AAGAATGGCATACCTCCAAA+GGG - chr3_2:89132246-89132265 None:intergenic 40.0%
TTGAGTATTATACTGGGTGG+GGG - chr3_2:89132330-89132349 None:intergenic 40.0%
ATTTCAAGACAGGCTAAGTG+AGG - chr3_2:89132385-89132404 None:intergenic 40.0%
TGTAGTTCTTTGGTGAGCTT+TGG + chr3_2:89132556-89132575 Msa0435790:intron 40.0%
! CTTCACTAGCCATTTGCTTT+TGG + chr3_2:89132688-89132707 Msa0435790:intron 40.0%
! ATTGAGAAATTCGTCGGTTG+TGG + chr3_2:89133114-89133133 Msa0435790:CDS 40.0%
! CAAAAAAGCGCGAACATACA+GGG - chr3_2:89133199-89133218 None:intergenic 40.0%
! ACAAAAAAGCGCGAACATAC+AGG - chr3_2:89133200-89133219 None:intergenic 40.0%
AAAGATCAGAGTGAGGAAGA+AGG - chr3_2:89133446-89133465 None:intergenic 40.0%
AAGAGAGAAAGATCAGAGTG+AGG - chr3_2:89133453-89133472 None:intergenic 40.0%
AAGTTATGAGAGGATGGGTA+TGG - chr3_2:89133487-89133506 None:intergenic 40.0%
ATTTATATTAGGGGTGGGCA+TGG + chr3_2:89133693-89133712 Msa0435790:intron 40.0%
!! TTCAAAATTCCGGTTCGGTT+CGG - chr3_2:89133747-89133766 None:intergenic 40.0%
!! ACCGAACCGGAATTTTGAAA+TGG + chr3_2:89133748-89133767 Msa0435790:intron 40.0%
CCCGAACCATTTCAAAATTC+CGG - chr3_2:89133757-89133776 None:intergenic 40.0%
!!! CCGGAATTTTGAAATGGTTC+GGG + chr3_2:89133754-89133773 Msa0435790:intron 40.0%
!! AAACCTGAAACGGTTTGGTT+CGG - chr3_2:89133784-89133803 None:intergenic 40.0%
ACCGAACTGAACCAAAGTTA+TGG + chr3_2:89133811-89133830 Msa0435790:intron 40.0%
!!! TGTTTTGGTTTGGTTCGGTA+TGG - chr3_2:89133865-89133884 None:intergenic 40.0%
AAGTGCTAACATGGAGAAGT+TGG - chr3_2:89134082-89134101 None:intergenic 40.0%
! AGTTTGCTCAAGTGCTAACA+TGG - chr3_2:89134091-89134110 None:intergenic 40.0%
! TCACTGAGTTGTTTCCCTTA+TGG - chr3_2:89134326-89134345 None:intergenic 40.0%
GTGATATGCCAAAGTTAACG+AGG + chr3_2:89134342-89134361 Msa0435790:intron 40.0%
GATATGCCAAAGTTAACGAG+GGG + chr3_2:89134344-89134363 Msa0435790:intron 40.0%
TATAGACCCCTCGTTAACTT+TGG - chr3_2:89134353-89134372 None:intergenic 40.0%
AACAAACACCTCCGAAAGAA+AGG + chr3_2:89134383-89134402 Msa0435790:intron 40.0%
GGTTCCTTCTATATCACACT+AGG + chr3_2:89134404-89134423 Msa0435790:intron 40.0%
GATCCAACAAAGAGTTCAAG+TGG + chr3_2:89135022-89135041 Msa0435790:intron 40.0%
CGGTTCGTGAACCATTATAA+TGG + chr3_2:89135152-89135171 Msa0435790:intron 40.0%
!!! CGGTTATTTTTGGTTCGGTT+CGG + chr3_2:89135177-89135196 Msa0435790:intron 40.0%
TTGCACGAAAACCAACTAAC+AGG + chr3_2:89135303-89135322 Msa0435790:intron 40.0%
TGCACGAAAACCAACTAACA+GGG + chr3_2:89135304-89135323 Msa0435790:intron 40.0%
CTCTGACAAATCATACCCAA+TGG + chr3_2:89135327-89135346 Msa0435790:intron 40.0%
CAAATCATACCCAATGGCAA+TGG + chr3_2:89135333-89135352 Msa0435790:intron 40.0%
GGTAGAACGTAGGGTAAATT+CGG - chr3_2:89135581-89135600 None:intergenic 40.0%
! AGCTGCTTTGTGACTATTTG+AGG + chr3_2:89135820-89135839 Msa0435790:intron 40.0%
TTAATAGTGAAGAACAGGCG+GGG + chr3_2:89135972-89135991 Msa0435790:intron 40.0%
!!! GGAAATGGGTTTTTGGTGTT+AGG + chr3_2:89136270-89136289 Msa0435790:intron 40.0%
AAAGAACAGAGTGAGGAAGA+AGG + chr3_2:89136338-89136357 Msa0435790:intron 40.0%
GTTGGCAATTGGTTAGTAGA+GGG - chr3_2:89136450-89136469 None:intergenic 40.0%
AGTTGGCAATTGGTTAGTAG+AGG - chr3_2:89136451-89136470 None:intergenic 40.0%
ATATGTGGCACTTGATGAGT+TGG - chr3_2:89136468-89136487 None:intergenic 40.0%
!!! GTGCGTTTTTTTGACGGAAA+CGG + chr3_2:89136505-89136524 Msa0435790:intron 40.0%
!!! GTTTTTTTGACGGAAACGGA+CGG + chr3_2:89136509-89136528 Msa0435790:intron 40.0%
!! ACCAACTTGTTGGTAAACAG+GGG - chr3_2:89136815-89136834 None:intergenic 40.0%
!! GAACCAACTTGTTGGTAAAC+AGG - chr3_2:89136817-89136836 None:intergenic 40.0%
! TCTAGTTCAATATCCTCGGT+TGG + chr3_2:89136835-89136854 Msa0435790:CDS 40.0%
ATTCCGATGCTACCACAAAT+GGG + chr3_2:89136926-89136945 Msa0435790:CDS 40.0%
ATAGAGAGCCGAGACTAATA+GGG - chr3_2:89136973-89136992 None:intergenic 40.0%
TATAGAGAGCCGAGACTAAT+AGG - chr3_2:89136974-89136993 None:intergenic 40.0%
!! TGTAATGGGTTAGGTATCGT+TGG - chr3_2:89137032-89137051 None:intergenic 40.0%
TCAATTCTTTCATGACCACC+CGG + chr3_2:89137097-89137116 Msa0435790:three_prime_UTR 40.0%
ACTACTACCAAAATCGATCC+GGG - chr3_2:89137118-89137137 None:intergenic 40.0%
GACTACTACCAAAATCGATC+CGG - chr3_2:89137119-89137138 None:intergenic 40.0%
!! TTGACGGATGCAGATCTTTT+TGG + chr3_2:89137239-89137258 Msa0435790:three_prime_UTR 40.0%
AGAGGAAGAGGAAGAAACCA+TGG + chr3_2:89130609-89130628 Msa0435790:five_prime_UTR 45.0%
TGAGGAGAGTGACAACAAGA+TGG + chr3_2:89130652-89130671 Msa0435790:five_prime_UTR 45.0%
! GGAGGGGAATGAAATGGATT+AGG - chr3_2:89130704-89130723 None:intergenic 45.0%
CGAATCGATCGATCAGTGTA+TGG - chr3_2:89130763-89130782 None:intergenic 45.0%
! TTTTCGCGGGAAATTAGTGG+TGG - chr3_2:89130893-89130912 None:intergenic 45.0%
!!! GAGAAGCAAGGTTTTTTCGC+GGG - chr3_2:89130906-89130925 None:intergenic 45.0%
!!! GGAGAAGCAAGGTTTTTTCG+CGG - chr3_2:89130907-89130926 None:intergenic 45.0%
GAAAAAACCTTGCTTCTCCG+TGG + chr3_2:89130908-89130927 Msa0435790:CDS 45.0%
! TGATTGTTGAGTGGTTCGGA+GGG - chr3_2:89130970-89130989 None:intergenic 45.0%
! ATGATTGTTGAGTGGTTCGG+AGG - chr3_2:89130971-89130990 None:intergenic 45.0%
CTAACCCTAAAAAACCCGCT+TGG + chr3_2:89131118-89131137 Msa0435790:CDS 45.0%
TTGGATGTGTTCTTCCAAGC+GGG - chr3_2:89131135-89131154 None:intergenic 45.0%
GCTTGGAAGAACACATCCAA+TGG + chr3_2:89131135-89131154 Msa0435790:CDS 45.0%
TGCTGAGGTCAGTCATGTAA+TGG + chr3_2:89131167-89131186 Msa0435790:CDS 45.0%
GCTGAGGTCAGTCATGTAAT+GGG + chr3_2:89131168-89131187 Msa0435790:CDS 45.0%
!! ATGTAATGGGTGCTGTCTCT+TGG + chr3_2:89131181-89131200 Msa0435790:CDS 45.0%
CGGATCAATCTCCATTTCTC+AGG + chr3_2:89131257-89131276 Msa0435790:CDS 45.0%
TGCATTAGCAGTAGTAGCAG+TGG - chr3_2:89131601-89131620 None:intergenic 45.0%
!! GGTTGATGATTAGCTTGAGG+AGG - chr3_2:89131744-89131763 None:intergenic 45.0%
TGTAGATGAGCACAGTCACA+GGG + chr3_2:89131914-89131933 Msa0435790:CDS 45.0%
! CACAGTCACAGGGGTAATTT+TGG + chr3_2:89131924-89131943 Msa0435790:CDS 45.0%
CACCGACCACGTAACAATTA+TGG + chr3_2:89131948-89131967 Msa0435790:CDS 45.0%
TCTGAGTGCATCCTATGTTG+GGG - chr3_2:89132029-89132048 None:intergenic 45.0%
CTCTGAGTGCATCCTATGTT+GGG - chr3_2:89132030-89132049 None:intergenic 45.0%
CAACATAGGATGCACTCAGA+GGG + chr3_2:89132029-89132048 Msa0435790:CDS 45.0%
GCATTAGTTGTGTCTTGTGG+TGG - chr3_2:89132172-89132191 None:intergenic 45.0%
CTACAGTTTGAACCCTTTGG+AGG + chr3_2:89132231-89132250 Msa0435790:CDS 45.0%
CAAGAATGGCATACCTCCAA+AGG - chr3_2:89132247-89132266 None:intergenic 45.0%
AAGTCGAACATGGACGTACA+TGG + chr3_2:89132486-89132505 Msa0435790:CDS 45.0%
GAACATGGACGTACATGGTT+GGG + chr3_2:89132491-89132510 Msa0435790:CDS 45.0%
! TCACTTGATGAGTTGGCAAC+TGG + chr3_2:89133323-89133342 Msa0435790:intron 45.0%
AGTTGGCAACTGGTTAGTAG+AGG + chr3_2:89133333-89133352 Msa0435790:intron 45.0%
GTTGGCAACTGGTTAGTAGA+GGG + chr3_2:89133334-89133353 Msa0435790:intron 45.0%
TATGAGAGGATGGGTATGGA+AGG - chr3_2:89133483-89133502 None:intergenic 45.0%
!!! TCGGTTCGGTTCGGTTTTTT+GGG - chr3_2:89133728-89133747 None:intergenic 45.0%
!!! TTCGGTTCGGTTCGGTTTTT+TGG - chr3_2:89133729-89133748 None:intergenic 45.0%
AAACCGAACCAAACCGTTTC+AGG + chr3_2:89133778-89133797 Msa0435790:intron 45.0%
!! GAACCAAACCGTTTCAGGTT+TGG + chr3_2:89133783-89133802 Msa0435790:intron 45.0%
! GGTTAGCTCCAAACCTGAAA+CGG - chr3_2:89133794-89133813 None:intergenic 45.0%
GTTAACGAGGGGTCTATAGA+TGG + chr3_2:89134355-89134374 Msa0435790:intron 45.0%
AGAAGGAACCTTTCTTTCGG+AGG - chr3_2:89134394-89134413 None:intergenic 45.0%
GACTTCTGTCAAGGCTAACT+GGG - chr3_2:89134463-89134482 None:intergenic 45.0%
!! GTGGTTTGGTTCGGTTCAAA+CGG + chr3_2:89135070-89135089 Msa0435790:intron 45.0%
!! TTGGTTCGGTTCAAACGGTT+CGG + chr3_2:89135075-89135094 Msa0435790:intron 45.0%
!! GGTTCAAGATGGTTCGGTTA+TGG + chr3_2:89135101-89135120 Msa0435790:intron 45.0%
TTTGTCAGAGCCCTGTTAGT+TGG - chr3_2:89135317-89135336 None:intergenic 45.0%
TTTCCTTGGCCATTGCCATT+GGG - chr3_2:89135345-89135364 None:intergenic 45.0%
ATTTCCTTGGCCATTGCCAT+TGG - chr3_2:89135346-89135365 None:intergenic 45.0%
AATGGCAATGGCCAAGGAAA+TGG + chr3_2:89135345-89135364 Msa0435790:intron 45.0%
AGAAGTCCAGACCATTTCCT+TGG - chr3_2:89135359-89135378 None:intergenic 45.0%
AAGGAAATGGTCTGGACTTC+TGG + chr3_2:89135358-89135377 Msa0435790:intron 45.0%
GGGTAAATTCGGTAAGTGGA+TGG - chr3_2:89135570-89135589 None:intergenic 45.0%
CGTAGGGTAAATTCGGTAAG+TGG - chr3_2:89135574-89135593 None:intergenic 45.0%
AAGCTATGAGAGGGTGAGTA+TGG + chr3_2:89136297-89136316 Msa0435790:intron 45.0%
TATGAGAGGGTGAGTATGGA+AGG + chr3_2:89136301-89136320 Msa0435790:intron 45.0%
! GCACTTGATGAGTTGGCAAT+TGG - chr3_2:89136461-89136480 None:intergenic 45.0%
! AAAAACGCACTGCTGGCTAA+CGG - chr3_2:89136495-89136514 None:intergenic 45.0%
!!! CCAGCAGTGCGTTTTTTTGA+CGG + chr3_2:89136499-89136518 Msa0435790:intron 45.0%
CGGTAGGGACCAATTTCAAA+AGG + chr3_2:89136529-89136548 Msa0435790:intron 45.0%
CAAAAACGCGCGAACTTACA+GGG + chr3_2:89136605-89136624 Msa0435790:intron 45.0%
!! CCAACTTGTTGGTAAACAGG+GGG - chr3_2:89136814-89136833 None:intergenic 45.0%
! ATTGCAAGTTGAACCAACCG+AGG - chr3_2:89136851-89136870 None:intergenic 45.0%
CATTCCGATGCTACCACAAA+TGG + chr3_2:89136925-89136944 Msa0435790:CDS 45.0%
TTCCGATGCTACCACAAATG+GGG + chr3_2:89136927-89136946 Msa0435790:CDS 45.0%
TCTCGGCTCTCTATACAGTT+AGG + chr3_2:89136979-89136998 Msa0435790:three_prime_UTR 45.0%
CTCGGCTCTCTATACAGTTA+GGG + chr3_2:89136980-89136999 Msa0435790:three_prime_UTR 45.0%
CTCTCTATACAGTTAGGGAG+CGG + chr3_2:89136985-89137004 Msa0435790:three_prime_UTR 45.0%
!!! TTTTATTATAAGTTTTTTAT+TGG + chr3_2:89136718-89136737 Msa0435790:intron 5.0%
CTCCTCCTCCTCCTGATTTA+CGG - chr3_2:89130587-89130606 None:intergenic 50.0%
! CGCTCTGTGTTGTGTTGTTG+AGG + chr3_2:89130634-89130653 Msa0435790:five_prime_UTR 50.0%
GGTTAGGATCTTGGTTGCAG+AGG - chr3_2:89130683-89130702 None:intergenic 50.0%
AGAGGAAGAATCAGATGCGG+TGG - chr3_2:89130860-89130879 None:intergenic 50.0%
! ATTGTTGAGTGGTTCGGAGG+GGG - chr3_2:89130968-89130987 None:intergenic 50.0%
! GATTGTTGAGTGGTTCGGAG+GGG - chr3_2:89130969-89130988 None:intergenic 50.0%
GGTGGCGAATGATTGTTGAG+TGG - chr3_2:89130979-89130998 None:intergenic 50.0%
GATGAAGAAACAGACTGCGG+CGG - chr3_2:89131009-89131028 None:intergenic 50.0%
GACAACAGCAGCAACTGGAT+TGG - chr3_2:89131049-89131068 None:intergenic 50.0%
TCTACGACAACAGCAGCAAC+TGG - chr3_2:89131054-89131073 None:intergenic 50.0%
GAAGGCTTAGCAGACAAAGC+AGG - chr3_2:89131207-89131226 None:intergenic 50.0%
AAATTCACATCTGCCGCCGA+CGG + chr3_2:89131231-89131250 Msa0435790:CDS 50.0%
CAAAAACCGATGAAGTGCGG+AGG + chr3_2:89131666-89131685 Msa0435790:CDS 50.0%
! AATGGTGGAGCAACAACCGA+TGG - chr3_2:89131765-89131784 None:intergenic 50.0%
ATCAGTTGCCCCACCATTTC+CGG + chr3_2:89131788-89131807 Msa0435790:CDS 50.0%
!! TCTGAAGCACCGGAAATGGT+GGG - chr3_2:89131800-89131819 None:intergenic 50.0%
!! ATCTGAAGCACCGGAAATGG+TGG - chr3_2:89131801-89131820 None:intergenic 50.0%
! TTAGGAGGGATCTGAAGCAC+CGG - chr3_2:89131810-89131829 None:intergenic 50.0%
TAACCCCCAACTGGTGATCT+TGG - chr3_2:89131885-89131904 None:intergenic 50.0%
AGATCACCAGTTGGGGGTTA+TGG + chr3_2:89131885-89131904 Msa0435790:CDS 50.0%
GATCACCAGTTGGGGGTTAT+GGG + chr3_2:89131886-89131905 Msa0435790:CDS 50.0%
CTGTGACTGTGCTCATCTAC+AGG - chr3_2:89131915-89131934 None:intergenic 50.0%
CTGTAGATGAGCACAGTCAC+AGG + chr3_2:89131913-89131932 Msa0435790:CDS 50.0%
GTAGATGAGCACAGTCACAG+GGG + chr3_2:89131915-89131934 Msa0435790:CDS 50.0%
ACTAGGCGCAATCAAGATCC+AGG + chr3_2:89131972-89131991 Msa0435790:CDS 50.0%
ATGCTCATGCACCCCAACAT+AGG + chr3_2:89132015-89132034 Msa0435790:CDS 50.0%
CCTCTGAGTGCATCCTATGT+TGG - chr3_2:89132031-89132050 None:intergenic 50.0%
CCAACATAGGATGCACTCAG+AGG + chr3_2:89132028-89132047 Msa0435790:CDS 50.0%
TGCACTCAGAGGGATTTCAG+AGG + chr3_2:89132039-89132058 Msa0435790:CDS 50.0%
GCAACTGGAAAGAACATCGC+CGG - chr3_2:89132285-89132304 None:intergenic 50.0%
GGCGATGTTCTTTCCAGTTG+CGG + chr3_2:89132284-89132303 Msa0435790:CDS 50.0%
TATTATACTGGGTGGGGGAG+TGG - chr3_2:89132325-89132344 None:intergenic 50.0%
CGAACATGGACGTACATGGT+TGG + chr3_2:89132490-89132509 Msa0435790:CDS 50.0%
GATCAGAGTGAGGAAGAAGG+TGG - chr3_2:89133443-89133462 None:intergenic 50.0%
TATTAGGGGTGGGCATGGTT+CGG + chr3_2:89133698-89133717 Msa0435790:intron 50.0%
!! AATTCCGGTTCGGTTCGGTT+CGG - chr3_2:89133742-89133761 None:intergenic 50.0%
GCTCCAAACCTGAAACGGTT+TGG - chr3_2:89133789-89133808 None:intergenic 50.0%
GGCTAACTGGGCATTCTAGT+TGG - chr3_2:89134451-89134470 None:intergenic 50.0%
CGACTTCTGTCAAGGCTAAC+TGG - chr3_2:89134464-89134483 None:intergenic 50.0%
!! TCGGTTCAAACGGTTCGGTT+CGG + chr3_2:89135080-89135099 Msa0435790:intron 50.0%
!! CGGTTCGGTTCAAGATGGTT+CGG + chr3_2:89135095-89135114 Msa0435790:intron 50.0%
ATACCCAATGGCAATGGCCA+AGG + chr3_2:89135339-89135358 Msa0435790:intron 50.0%
CAATGGCCAAGGAAATGGTC+TGG + chr3_2:89135350-89135369 Msa0435790:intron 50.0%
AAGGGTTGCACAACAGCTAG+AGG + chr3_2:89135743-89135762 Msa0435790:intron 50.0%
GTTGCACAACAGCTAGAGGT+TGG + chr3_2:89135747-89135766 Msa0435790:intron 50.0%
AAGCAGCTTGCAATAGCTGC+TGG - chr3_2:89135808-89135827 None:intergenic 50.0%
TTAGGGCGCAAGCTATGAGA+GGG + chr3_2:89136288-89136307 Msa0435790:intron 50.0%
GAACAGAGTGAGGAAGAAGG+TGG + chr3_2:89136341-89136360 Msa0435790:intron 50.0%
CCGTCAAAAAAACGCACTGC+TGG - chr3_2:89136502-89136521 None:intergenic 50.0%
! TTTTGACGGAAACGGACGGT+AGG + chr3_2:89136513-89136532 Msa0435790:intron 50.0%
TTTGACGGAAACGGACGGTA+GGG + chr3_2:89136514-89136533 Msa0435790:intron 50.0%
! CCTGTAAGTTCGCGCGTTTT+TGG - chr3_2:89136607-89136626 None:intergenic 50.0%
CCAAAAACGCGCGAACTTAC+AGG + chr3_2:89136604-89136623 Msa0435790:intron 50.0%
TGCTACAGGGTGACAAACTG+AGG + chr3_2:89136761-89136780 Msa0435790:intron 50.0%
! AACTGAGGAAGCGTAACGAG+TGG + chr3_2:89136776-89136795 Msa0435790:CDS 50.0%
! ACTGAGGAAGCGTAACGAGT+GGG + chr3_2:89136777-89136796 Msa0435790:CDS 50.0%
CCCCCTGTTTACCAACAAGT+TGG + chr3_2:89136811-89136830 Msa0435790:CDS 50.0%
GTCCCCATTTGTGGTAGCAT+CGG - chr3_2:89136932-89136951 None:intergenic 50.0%
TCATGCAGAGTCCCCATTTG+TGG - chr3_2:89136941-89136960 None:intergenic 50.0%
! GGGTTAGGTATCGTTGGTTG+AGG - chr3_2:89137026-89137045 None:intergenic 50.0%
!! ATGACCACCCGGATCGATTT+TGG + chr3_2:89137108-89137127 Msa0435790:three_prime_UTR 50.0%
ACTACCAAAATCGATCCGGG+TGG - chr3_2:89137115-89137134 None:intergenic 50.0%
TTGAGGGGCCGTAAATCAGG+AGG + chr3_2:89130576-89130595 Msa0435790:five_prime_UTR 55.0%
CGTAAATCAGGAGGAGGAGG+AGG + chr3_2:89130585-89130604 Msa0435790:five_prime_UTR 55.0%
ACACAACACAGAGCGAGCCA+TGG - chr3_2:89130629-89130648 None:intergenic 55.0%
!! GGAAATTAGTGGTGGCGGCA+GGG - chr3_2:89130885-89130904 None:intergenic 55.0%
TCGCGGGAAATTAGTGGTGG+CGG - chr3_2:89130890-89130909 None:intergenic 55.0%
CTCAGCAACAACGAGGCCAT+TGG - chr3_2:89131154-89131173 None:intergenic 55.0%
CAATGGCCTCGTTGTTGCTG+AGG + chr3_2:89131152-89131171 Msa0435790:CDS 55.0%
GACTGACCTCAGCAACAACG+AGG - chr3_2:89131161-89131180 None:intergenic 55.0%
!! GTGGCAGTGGCTTGTTTCTG+AGG - chr3_2:89131582-89131601 None:intergenic 55.0%
AGCAGTAGTAGCAGTGGCAG+TGG - chr3_2:89131595-89131614 None:intergenic 55.0%
AAACCGATGAAGTGCGGAGG+AGG + chr3_2:89131669-89131688 Msa0435790:CDS 55.0%
TTGCCTCCTCCGCACTTCAT+CGG - chr3_2:89131675-89131694 None:intergenic 55.0%
!! GGGGCAACTGATGGTAATGG+TGG - chr3_2:89131780-89131799 None:intergenic 55.0%
GGTGGGGCAACTGATGGTAA+TGG - chr3_2:89131783-89131802 None:intergenic 55.0%
! GGAAATGGTGGGGCAACTGA+TGG - chr3_2:89131789-89131808 None:intergenic 55.0%
!! CTGAAGCACCGGAAATGGTG+GGG - chr3_2:89131799-89131818 None:intergenic 55.0%
!! GGGATCTGAAGCACCGGAAA+TGG - chr3_2:89131804-89131823 None:intergenic 55.0%
TGGGGTCCAAGATCACCAGT+TGG + chr3_2:89131876-89131895 Msa0435790:CDS 55.0%
GGGGTCCAAGATCACCAGTT+GGG + chr3_2:89131877-89131896 Msa0435790:CDS 55.0%
GGGTCCAAGATCACCAGTTG+GGG + chr3_2:89131878-89131897 Msa0435790:CDS 55.0%
GGTCCAAGATCACCAGTTGG+GGG + chr3_2:89131879-89131898 Msa0435790:CDS 55.0%
! GGAGGTGCATGGGTCAAGAA+TGG - chr3_2:89132261-89132280 None:intergenic 55.0%
ACTGGAAAGAACATCGCCGG+AGG - chr3_2:89132282-89132301 None:intergenic 55.0%
! TGCTTTCCGCCACTGGCTAA+CGG + chr3_2:89133289-89133308 Msa0435790:intron 55.0%
TGTATGCGTCCGTTAGCCAG+TGG - chr3_2:89133301-89133320 None:intergenic 55.0%
!! CGGTTCGGTTCGGTTCAAGA+TGG + chr3_2:89135090-89135109 Msa0435790:intron 55.0%
GTTAGGGCGCAAGCTATGAG+AGG + chr3_2:89136287-89136306 Msa0435790:intron 55.0%
! CTGGCTAACGGACGCATATG+TGG - chr3_2:89136483-89136502 None:intergenic 55.0%
! CGTCGTCGCCCTATTAGTCT+CGG + chr3_2:89136962-89136981 Msa0435790:three_prime_UTR 55.0%
AGGGGCCGTAAATCAGGAGG+AGG + chr3_2:89130579-89130598 Msa0435790:five_prime_UTR 60.0%
GGCCGTAAATCAGGAGGAGG+AGG + chr3_2:89130582-89130601 Msa0435790:five_prime_UTR 60.0%
TCAGGAGGAGGAGGAGGAAG+AGG + chr3_2:89130591-89130610 Msa0435790:five_prime_UTR 60.0%
GGAGGAGGAGGAAGAGGAAG+AGG + chr3_2:89130597-89130616 Msa0435790:five_prime_UTR 60.0%
!! GGGAAATTAGTGGTGGCGGC+AGG - chr3_2:89130886-89130905 None:intergenic 60.0%
GTCAGCACCGCGAACAACCA+GGG - chr3_2:89130935-89130954 None:intergenic 60.0%
AGTCAGCACCGCGAACAACC+AGG - chr3_2:89130936-89130955 None:intergenic 60.0%
GAAGAAACAGACTGCGGCGG+AGG - chr3_2:89131006-89131025 None:intergenic 60.0%
CTTGACCCATGCACCTCCTC+CGG + chr3_2:89132263-89132282 Msa0435790:CDS 60.0%
GGAAAGAACATCGCCGGAGG+AGG - chr3_2:89132279-89132298 None:intergenic 60.0%
GGGGGAGTTTCTTCCGCAAC+TGG - chr3_2:89132300-89132319 None:intergenic 60.0%
ATACTGGGTGGGGGAGTGGT+GGG - chr3_2:89132321-89132340 None:intergenic 60.0%
TATACTGGGTGGGGGAGTGG+TGG - chr3_2:89132322-89132341 None:intergenic 60.0%
TGGTCTCTGCTTTCCGCCAC+TGG + chr3_2:89133282-89133301 Msa0435790:intron 60.0%
ATGCGTCCGTTAGCCAGTGG+CGG - chr3_2:89133298-89133317 None:intergenic 60.0%
!! CGGTTCGGTTCGGTTCGGTT+CGG - chr3_2:89133732-89133751 None:intergenic 60.0%
CGAACCGAACCGAACCGAAC+CGG + chr3_2:89133735-89133754 Msa0435790:intron 60.0%
!! TTGGTTCGGTTCGGTTCGCG+CGG + chr3_2:89135186-89135205 Msa0435790:intron 60.0%
! GGAAGCGTAACGAGTGGGAG+AGG + chr3_2:89136782-89136801 Msa0435790:CDS 60.0%
!! AGTGGTGGCGGCAGGGTTAG+AGG - chr3_2:89130878-89130897 None:intergenic 65.0%
! GTTGAGTGGTTCGGAGGGGG+AGG - chr3_2:89130965-89130984 None:intergenic 65.0%
GAAACAGACTGCGGCGGAGG+AGG - chr3_2:89131003-89131022 None:intergenic 65.0%
GGAGATTGATCCGGCGCCGT+CGG - chr3_2:89131250-89131269 None:intergenic 65.0%
GGCAGCCCATAACCCCCAAC+TGG - chr3_2:89131894-89131913 None:intergenic 65.0%
! CATCGCCGGAGGAGGTGCAT+GGG - chr3_2:89132271-89132290 None:intergenic 65.0%
! ACATCGCCGGAGGAGGTGCA+TGG - chr3_2:89132272-89132291 None:intergenic 65.0%
TACTGGGTGGGGGAGTGGTG+GGG - chr3_2:89132320-89132339 None:intergenic 65.0%
!! TCGGTTCGGTTCGCGCGGTT+CGG + chr3_2:89135191-89135210 Msa0435790:intron 65.0%
!! TCGGTTCGCGCGGTTCGGTT+CGG + chr3_2:89135196-89135215 Msa0435790:intron 65.0%
!! GCGCGGTTCGGTTCGGTTCA+TGG + chr3_2:89135203-89135222 Msa0435790:intron 65.0%
CCAGGGCCCACGGAGAAGCA+AGG - chr3_2:89130918-89130937 None:intergenic 70.0%
CCTTGCTTCTCCGTGGGCCC+TGG + chr3_2:89130915-89130934 Msa0435790:CDS 70.0%
CCGCGAACAACCAGGGCCCA+CGG - chr3_2:89130928-89130947 None:intergenic 70.0%
CCGTGGGCCCTGGTTGTTCG+CGG + chr3_2:89130925-89130944 Msa0435790:CDS 70.0%
! TGGTTCGGAGGGGGAGGAGG+AGG - chr3_2:89130959-89130978 None:intergenic 70.0%
! GAGTGGTTCGGAGGGGGAGG+AGG - chr3_2:89130962-89130981 None:intergenic 70.0%
ACAGACTGCGGCGGAGGAGG+TGG - chr3_2:89131000-89131019 None:intergenic 70.0%
GATTGATCCGGCGCCGTCGG+CGG - chr3_2:89131247-89131266 None:intergenic 70.0%
ACTGGGTGGGGGAGTGGTGG+GGG - chr3_2:89132319-89132338 None:intergenic 70.0%
GACTGCGGCGGAGGAGGTGG+TGG - chr3_2:89130997-89131016 None:intergenic 75.0%
ACATCTGCCGCCGACGGCGC+CGG + chr3_2:89131237-89131256 Msa0435790:CDS 75.0%
! CTGGGTGGGGGAGTGGTGGG+GGG - chr3_2:89132318-89132337 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 89130575 89137310 89130575 ID=Msa0435790;Name=Msa0435790
chr3_2 mRNA 89130575 89137310 89130575 ID=Msa0435790-mRNA-1;Parent=Msa0435790;Name=Msa0435790-mRNA-1;_AED=0.08;_eAED=0.08;_QI=272|1|1|1|1|1|6|350|507
chr3_2 exon 89130575 89131278 89130575 ID=Msa0435790-mRNA-1:exon:26341;Parent=Msa0435790-mRNA-1
chr3_2 exon 89131558 89132134 89131558 ID=Msa0435790-mRNA-1:exon:26342;Parent=Msa0435790-mRNA-1
chr3_2 exon 89132211 89132370 89132211 ID=Msa0435790-mRNA-1:exon:26343;Parent=Msa0435790-mRNA-1
chr3_2 exon 89132455 89132545 89132455 ID=Msa0435790-mRNA-1:exon:26344;Parent=Msa0435790-mRNA-1
chr3_2 exon 89133073 89133144 89133073 ID=Msa0435790-mRNA-1:exon:26345;Parent=Msa0435790-mRNA-1
chr3_2 exon 89136769 89137310 89136769 ID=Msa0435790-mRNA-1:exon:26346;Parent=Msa0435790-mRNA-1
chr3_2 five_prime_UTR 89130575 89130846 89130575 ID=Msa0435790-mRNA-1:five_prime_utr;Parent=Msa0435790-mRNA-1
chr3_2 CDS 89130847 89131278 89130847 ID=Msa0435790-mRNA-1:cds;Parent=Msa0435790-mRNA-1
chr3_2 CDS 89131558 89132134 89131558 ID=Msa0435790-mRNA-1:cds;Parent=Msa0435790-mRNA-1
chr3_2 CDS 89132211 89132370 89132211 ID=Msa0435790-mRNA-1:cds;Parent=Msa0435790-mRNA-1
chr3_2 CDS 89132455 89132545 89132455 ID=Msa0435790-mRNA-1:cds;Parent=Msa0435790-mRNA-1
chr3_2 CDS 89133073 89133144 89133073 ID=Msa0435790-mRNA-1:cds;Parent=Msa0435790-mRNA-1
chr3_2 CDS 89136769 89136960 89136769 ID=Msa0435790-mRNA-1:cds;Parent=Msa0435790-mRNA-1
chr3_2 three_prime_UTR 89136961 89137310 89136961 ID=Msa0435790-mRNA-1:three_prime_utr;Parent=Msa0435790-mRNA-1
Gene Sequence

>Msa0435790

ATGGTTACTACCACCGCATCTGATTCTTCCTCTAACCCTGCCGCCACCACTAATTTCCCGCGAAAAAACCTTGCTTCTCCGTGGGCCCTGGTTGTTCGCGGTGCTGACTCCTCCTCCTCCCCCTCCGAACCACTCAACAATCATTCGCCACCACCTCCTCCGCCGCAGTCTGTTTCTTCATCATCGTCTCTAGATTCAGCCAATCCAGTTGCTGCTGTTGTCGTAGATAACAACAACTCCAATGCTAATAAGATTAACAATGTGGTTAACGCTAACCCTAAAAAACCCGCTTGGAAGAACACATCCAATGGCCTCGTTGTTGCTGAGGTCAGTCATGTAATGGGTGCTGTCTCTTGGCCTGCTTTGTCTGCTAAGCCTTCTGCTAAATTCACATCTGCCGCCGACGGCGCCGGATCAATCTCCATTTCTCAGGGGCCTGTTACATCAAACTCACCTCAGAAACAAGCCACTGCCACTGCTACTACTGCTAATGCAAGACATACTCCTCCAATGAATCACAGTCATAGTGTGGCTAACAGACAAAAACCGATGAAGTGCGGAGGAGGCAACAACAATAACAATAAGCCTGGTCCTTTGTCAAACAGTTTATCTAACCCTCCTCAAGCTAATCATCAACCATCGGTTGTTGCTCCACCATTACCATCAGTTGCCCCACCATTTCCGGTGCTTCAGATCCCTCCTAATACTTTCTTGGTTGATGGGGTTCAGTCTTACAAGAACAATAATGGCTGGGGTCCAAGATCACCAGTTGGGGGTTATGGGCTGCCTGTAGATGAGCACAGTCACAGGGGTAATTTTGGGCACCGACCACGTAACAATTATGGCACTAGGCGCAATCAAGATCCAGGAAATACAATGAACACTAGAGATGCTCATGCACCCCAACATAGGATGCACTCAGAGGGATTTCAGAGGCCTACACTACCCAATTCTGCTTATTTAGGGTCTCAGCCTATGAGACCGTTTCTAAATCATGCAGGGTTTCATGAATTCTATTATTATCCAACACTACAGTTTGAACCCTTTGGAGGTATGCCATTCTTGACCCATGCACCTCCTCCGGCGATGTTCTTTCCAGTTGCGGAAGAAACTCCCCCCACCACTCCCCCACCCAGTATAATACTCAAACAAATTGATTATTATTTTAGTGATGTTAATTTGGCGAATGATGAATTTCTGAAGTCGAACATGGACGTACATGGTTGGGTTCCAATTTCTTTGATTGCAAATTTCCCGCGAGTTAAAATTTTGACAAACAATACCGAATTGATACTAGATTCATTGAGAAATTCGTCGGTTGTGGAAGTAAATGGTGACAAACTGAGGAAGCGTAACGAGTGGGAGAGGTTTTTGCCCCCTGTTTACCAACAAGTTGGTTCTAGTTCAATATCCTCGGTTGGTTCAACTTGCAATACCATAGCTGCTGATTTTGATAAGATCACACTAGATGAAGCAACTGTGCTTAAACATTCCGATGCTACCACAAATGGGGACTCTGCATGA
Protein sequence

>Msa0435790

MVTTTASDSSSNPAATTNFPRKNLASPWALVVRGADSSSSPSEPLNNHSPPPPPPQSVSSSSSLDSANPVAAVVVDNNNSNANKINNVVNANPKKPAWKNTSNGLVVAEVSHVMGAVSWPALSAKPSAKFTSAADGAGSISISQGPVTSNSPQKQATATATTANARHTPPMNHSHSVANRQKPMKCGGGNNNNNKPGPLSNSLSNPPQANHQPSVVAPPLPSVAPPFPVLQIPPNTFLVDGVQSYKNNNGWGPRSPVGGYGLPVDEHSHRGNFGHRPRNNYGTRRNQDPGNTMNTRDAHAPQHRMHSEGFQRPTLPNSAYLGSQPMRPFLNHAGFHEFYYYPTLQFEPFGGMPFLTHAPPPAMFFPVAEETPPTTPPPSIILKQIDYYFSDVNLANDEFLKSNMDVHGWVPISLIANFPRVKILTNNTELILDSLRNSSVVEVNGDKLRKRNEWERFLPPVYQQVGSSSISSVGSTCNTIAADFDKITLDEATVLKHSDATTNGDSA*