Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440140 | XP_003600958.3 | 97.287 | 516 | 12 | 1 | 1 | 514 | 59 | 574 | 0.0 | 1035 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440140 | sp|Q6P806|SAM50_XENTR | 27.181 | 493 | 294 | 18 | 27 | 508 | 23 | 461 | 1.44e-26 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440140 | G7JBW9 | 97.287 | 516 | 12 | 1 | 1 | 514 | 1 | 516 | 0.0 | 1035 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0416900 | Msa0440140 | 0.934938 | 1.857158e-96 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440140 | MtrunA17_Chr3g0113911 | 97.287 | 516 | 12 | 1 | 1 | 514 | 1 | 516 | 0.0 | 1035 |
| Msa0440140 | MtrunA17_Chr5g0437431 | 75.000 | 480 | 115 | 1 | 34 | 513 | 43 | 517 | 0.0 | 752 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440140 | AT5G05520.1 | 53.788 | 528 | 226 | 4 | 1 | 514 | 1 | 524 | 0.0 | 602 |
| Msa0440140 | AT3G11070.1 | 56.688 | 471 | 194 | 1 | 44 | 514 | 60 | 520 | 0.0 | 590 |
Find 168 sgRNAs with CRISPR-Local
Find 378 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGTTGACTTCTTCTTCTT+TGG | 0.150817 | 3_3:+6701324 | None:intergenic |
| ACAATAGTGATTCCTCTAAA+TGG | 0.189239 | 3_3:-6698396 | Msa0440140:CDS |
| TCTTTGGGTTTGGGATTGTT+AGG | 0.197930 | 3_3:+6701340 | None:intergenic |
| GACTTCTTCTTCTTTGGGTT+TGG | 0.206321 | 3_3:+6701330 | None:intergenic |
| TGATCTATGGGATGCTTCTT+TGG | 0.223236 | 3_3:-6699884 | Msa0440140:CDS |
| ACTTCTTCTTCTTTGGGTTT+GGG | 0.237307 | 3_3:+6701331 | None:intergenic |
| GCTCGGTATGCTGTCCCTTT+TGG | 0.238607 | 3_3:-6698643 | Msa0440140:CDS |
| GAGGCTGCTAGTAGAGTTTC+TGG | 0.248065 | 3_3:-6700947 | Msa0440140:CDS |
| TGTTAGGTTATGGTGATCTA+TGG | 0.249561 | 3_3:-6699897 | Msa0440140:CDS |
| CCACCCAAATAAAACCTTTC+AGG | 0.256091 | 3_3:+6698532 | None:intergenic |
| TTATATGCCCCTCGACTTAA+AGG | 0.269154 | 3_3:-6699823 | Msa0440140:CDS |
| TGTTCTCTTAACCACCTAAT+TGG | 0.273803 | 3_3:+6698316 | None:intergenic |
| TTCCATGATTCGATCGGTTT+TGG | 0.280378 | 3_3:+6701375 | None:intergenic |
| CATGATTTGACATACACTTT+TGG | 0.284832 | 3_3:-6699685 | Msa0440140:CDS |
| AGTAGAGTTTCTGGTGAATT+TGG | 0.297479 | 3_3:-6700938 | Msa0440140:CDS |
| AAAAGGCATAGTTTCAGATT+TGG | 0.299452 | 3_3:-6697450 | Msa0440140:three_prime_UTR |
| AACCGCAAGCTTCGATTATC+TGG | 0.301046 | 3_3:+6699487 | None:intergenic |
| AAAGGCATAGTTTCAGATTT+GGG | 0.305577 | 3_3:-6697449 | Msa0440140:three_prime_UTR |
| CTGATGTTCGGAAGGATTCT+AGG | 0.315988 | 3_3:+6698206 | None:intergenic |
| TCGTTGACTTCTTCTTCTTT+GGG | 0.325617 | 3_3:+6701325 | None:intergenic |
| AGCTTCGATCACCCAATCTT+TGG | 0.327746 | 3_3:+6701138 | None:intergenic |
| AACAACAACATTTGCAGTAT+TGG | 0.343627 | 3_3:+6700979 | None:intergenic |
| GGATTTAAAACTAGGGGATT+AGG | 0.345578 | 3_3:-6698463 | Msa0440140:CDS |
| ACAACAACATTTGCAGTATT+GGG | 0.349028 | 3_3:+6700980 | None:intergenic |
| CATTGTGGGGATTTAAAACT+AGG | 0.357914 | 3_3:-6698471 | Msa0440140:CDS |
| ACATCTCTGCTTTGTCTTCG+TGG | 0.360532 | 3_3:+6698430 | None:intergenic |
| AAGCTTGCGGTTTCTGCGTC+AGG | 0.360829 | 3_3:-6699476 | Msa0440140:intron |
| AAGAAAACTCCTGCCAATCT+TGG | 0.365590 | 3_3:+6699761 | None:intergenic |
| CAATTGTTGGGCATGTCTCT+TGG | 0.368458 | 3_3:-6699727 | Msa0440140:CDS |
| CTTTGTCTTCGTGGTTCAGC+AGG | 0.377794 | 3_3:+6698439 | None:intergenic |
| AGTATACGTTTAAAATTGAT+AGG | 0.379846 | 3_3:-6699579 | Msa0440140:CDS |
| CTTTGGGTTTGGGATTGTTA+GGG | 0.381221 | 3_3:+6701341 | None:intergenic |
| CTCAGCTCCTTCATAGAGGC+TGG | 0.381857 | 3_3:-6697596 | Msa0440140:exon |
| TCCAATGGAGTCCCATTTAG+AGG | 0.384650 | 3_3:+6698384 | None:intergenic |
| TGGGATGCTTCTTTGGCTTA+CGG | 0.394407 | 3_3:-6699877 | Msa0440140:CDS |
| CATATGAAGAGGCCTCAATT+TGG | 0.397073 | 3_3:-6697312 | Msa0440140:three_prime_UTR |
| TTCTCTCCAGTTTGTACCCT+AGG | 0.403753 | 3_3:-6698505 | Msa0440140:CDS |
| ATAGGAGAAACTCACCAATT+AGG | 0.405028 | 3_3:-6699561 | Msa0440140:CDS |
| TTGCTAGGCTTCAGAGTCTC+GGG | 0.417082 | 3_3:-6701051 | Msa0440140:CDS |
| CCGATGAAAGGCGTCGGGAT+AGG | 0.422946 | 3_3:+6701212 | None:intergenic |
| TTAAATCCCCACAATGTCAT+TGG | 0.425826 | 3_3:+6698478 | None:intergenic |
| TGTCCATGCTTTCCCAAGAT+TGG | 0.427354 | 3_3:-6699774 | Msa0440140:CDS |
| ATGGACAGCCGTGCAATAAC+CGG | 0.428647 | 3_3:+6699790 | None:intergenic |
| GGTTTGGGATTGTTAGGGTT+TGG | 0.432140 | 3_3:+6701346 | None:intergenic |
| GCATGACCTCAATCAATGTT+AGG | 0.432768 | 3_3:+6697240 | None:intergenic |
| TTAAGAGAACACGGGGTTCA+TGG | 0.435002 | 3_3:-6698304 | Msa0440140:CDS |
| TTCGTACAAAGAGCAATTGT+TGG | 0.435947 | 3_3:-6699740 | Msa0440140:CDS |
| CTTGCTAGGCTTCAGAGTCT+CGG | 0.437183 | 3_3:-6701052 | Msa0440140:CDS |
| GCAACACGAAAACCAAAGAT+TGG | 0.443283 | 3_3:-6701150 | Msa0440140:CDS |
| ACATTGTTGCTCTGTGTCAC+TGG | 0.443909 | 3_3:-6697526 | Msa0440140:three_prime_UTR |
| CAATAGTGATTCCTCTAAAT+GGG | 0.445365 | 3_3:-6698395 | Msa0440140:CDS |
| CTACACTCACCTCTGTTGCT+TGG | 0.445903 | 3_3:+6699848 | None:intergenic |
| CATCCGAGATTGTGCTTGCT+AGG | 0.450714 | 3_3:-6701066 | Msa0440140:CDS |
| CATTTGCAATGGATCCGTTA+AGG | 0.452833 | 3_3:+6699654 | None:intergenic |
| TAGTGTACATGTATGTTTGA+TGG | 0.458095 | 3_3:-6697200 | Msa0440140:three_prime_UTR |
| GCTGTATTATAAAACCCAAA+AGG | 0.458909 | 3_3:+6698628 | None:intergenic |
| AGAAAACTCCTGCCAATCTT+GGG | 0.459151 | 3_3:+6699762 | None:intergenic |
| CATGCTTTCCCAAGATTGGC+AGG | 0.461246 | 3_3:-6699770 | Msa0440140:CDS |
| TTGGGCAACTCGACCGGTCC+AGG | 0.464177 | 3_3:+6700998 | None:intergenic |
| CGATGAAAGGCGTCGGGATA+GGG | 0.480574 | 3_3:+6701213 | None:intergenic |
| ATCCACATCCCACTGATGTT+CGG | 0.481015 | 3_3:+6698194 | None:intergenic |
| TCGTACAAAGAGCAATTGTT+GGG | 0.482119 | 3_3:-6699739 | Msa0440140:CDS |
| GTTTCTACCACTCACCTTGG+TGG | 0.482346 | 3_3:-6699517 | Msa0440140:CDS |
| TTCCAAAACCGATCGAATCA+TGG | 0.487491 | 3_3:-6701377 | Msa0440140:exon |
| ACTTAAAGGAACTTCAAATC+CGG | 0.491348 | 3_3:-6699809 | Msa0440140:CDS |
| CAAAAGTGTATGTCAAATCA+TGG | 0.491601 | 3_3:+6699686 | None:intergenic |
| AACCTTTCAGGAAGGGGAGA+TGG | 0.491715 | 3_3:+6698544 | None:intergenic |
| TTCATATGTAGCAGTAAATG+AGG | 0.491876 | 3_3:+6697327 | None:intergenic |
| GCAGTATTGGGCAACTCGAC+CGG | 0.494389 | 3_3:+6700992 | None:intergenic |
| GGTCTGTAAGAAGGCAGCTT+GGG | 0.496347 | 3_3:-6699624 | Msa0440140:CDS |
| GGTCCTCCTAGGGTACAAAC+TGG | 0.501371 | 3_3:+6698499 | None:intergenic |
| ACAATGTCATTGGTCCTCCT+AGG | 0.504133 | 3_3:+6698488 | None:intergenic |
| CCAGACTGAAAATTAAGAAA+AGG | 0.506059 | 3_3:-6697467 | Msa0440140:three_prime_UTR |
| GGTCGCGGAGACGGGAAAGT+GGG | 0.508908 | 3_3:+6701254 | None:intergenic |
| ATCACGTCGTGAACTCGGAT+TGG | 0.510102 | 3_3:+6701181 | None:intergenic |
| GAATTATCACGTCGTGAACT+CGG | 0.510718 | 3_3:+6701176 | None:intergenic |
| CAACACGAAAACCAAAGATT+GGG | 0.512740 | 3_3:-6701149 | Msa0440140:CDS |
| ATCCATTGCAAATGGCATCC+AGG | 0.513779 | 3_3:-6699645 | Msa0440140:CDS |
| TCCTCTAAATGGGACTCCAT+TGG | 0.521104 | 3_3:-6698385 | Msa0440140:CDS |
| TTTGTTTCTACCACTCACCT+TGG | 0.527296 | 3_3:-6699520 | Msa0440140:CDS |
| TCTAGGCGGAAAAGACTAGT+AGG | 0.527338 | 3_3:+6698163 | None:intergenic |
| TCACCAATTAGGCCCACAAA+AGG | 0.527965 | 3_3:-6699550 | Msa0440140:CDS |
| AATATAAGCACTTCTCTCCT+CGG | 0.528523 | 3_3:-6698234 | Msa0440140:CDS |
| CTGTATTATAAAACCCAAAA+GGG | 0.529697 | 3_3:+6698629 | None:intergenic |
| ATAATACAGCACTGAACCTA+GGG | 0.530622 | 3_3:-6698615 | Msa0440140:CDS |
| TTGGAACTAGCTCCGATGAA+AGG | 0.530663 | 3_3:+6701200 | None:intergenic |
| TAGCTCCGATGAAAGGCGTC+GGG | 0.530901 | 3_3:+6701207 | None:intergenic |
| AGCTTCGATTATCTGGTGTA+AGG | 0.532681 | 3_3:+6699494 | None:intergenic |
| TTGCAGACTAGTTCTTGGAC+TGG | 0.533983 | 3_3:-6699946 | Msa0440140:intron |
| GTGATCGAAGCTGAACTTGA+GGG | 0.537107 | 3_3:-6701127 | Msa0440140:CDS |
| TGGTCGCGGAGACGGGAAAG+TGG | 0.538878 | 3_3:+6701253 | None:intergenic |
| CGATGCTCATTGCATGGCTG+AGG | 0.539638 | 3_3:-6697373 | Msa0440140:three_prime_UTR |
| CTTAACGGATCCATTGCAAA+TGG | 0.540593 | 3_3:-6699653 | Msa0440140:CDS |
| CTGCCAATCTTGGGAAAGCA+TGG | 0.541220 | 3_3:+6699771 | None:intergenic |
| AAATAAAACCTTTCAGGAAG+GGG | 0.541476 | 3_3:+6698538 | None:intergenic |
| GAGTTCTCAATGCCAAATTG+AGG | 0.542459 | 3_3:+6697300 | None:intergenic |
| TTCCGAACATCAGTGGGATG+TGG | 0.543494 | 3_3:-6698196 | Msa0440140:CDS |
| CCAAATAAAACCTTTCAGGA+AGG | 0.546745 | 3_3:+6698536 | None:intergenic |
| TTGAAGTTCCTTTAAGTCGA+GGG | 0.547500 | 3_3:+6699815 | None:intergenic |
| AGCCATCTCCCCTTCCTGAA+AGG | 0.547766 | 3_3:-6698546 | Msa0440140:CDS |
| AGTAAGATTAGTCTTGAGCC+TGG | 0.548788 | 3_3:-6701016 | Msa0440140:CDS |
| CAATGTCATTGGTCCTCCTA+GGG | 0.549092 | 3_3:+6698489 | None:intergenic |
| AGGAGGACCAATGACATTGT+GGG | 0.550019 | 3_3:-6698485 | Msa0440140:CDS |
| CTCAGCCATGCAATGAGCAT+CGG | 0.550287 | 3_3:+6697374 | None:intergenic |
| ATAACTCCTAACATTGATTG+AGG | 0.550432 | 3_3:-6697246 | Msa0440140:three_prime_UTR |
| AAGCAACAGAGGTGAGTGTA+GGG | 0.550569 | 3_3:-6699846 | Msa0440140:CDS |
| GCTTCTCAGCTCCTTCATAG+AGG | 0.551247 | 3_3:-6697600 | Msa0440140:exon |
| AAGCCTAGCAAGCACAATCT+CGG | 0.551318 | 3_3:+6701063 | None:intergenic |
| TATAATACAGCACTGAACCT+AGG | 0.553078 | 3_3:-6698616 | Msa0440140:CDS |
| TCTAAATGGGACTCCATTGG+AGG | 0.553806 | 3_3:-6698382 | Msa0440140:CDS |
| CTTCAAATCCGGTTATTGCA+CGG | 0.555359 | 3_3:-6699798 | Msa0440140:CDS |
| TGTTGCTCTGTGTCACTGGA+TGG | 0.555661 | 3_3:-6697522 | Msa0440140:three_prime_UTR |
| TGTCAAACCAGCCTCTATGA+AGG | 0.556562 | 3_3:+6697589 | None:intergenic |
| TGGCATCCAGGTCTGTAAGA+AGG | 0.556584 | 3_3:-6699633 | Msa0440140:CDS |
| GTAAGAAGGCAGCTTGGGCA+CGG | 0.557992 | 3_3:-6699619 | Msa0440140:CDS |
| CCTATCCCGACGCCTTTCAT+CGG | 0.558357 | 3_3:-6701212 | Msa0440140:CDS |
| AGGTCTGTAAGAAGGCAGCT+TGG | 0.562674 | 3_3:-6699625 | Msa0440140:CDS |
| GTTAGGTTATGGTGATCTAT+GGG | 0.565546 | 3_3:-6699896 | Msa0440140:CDS |
| GATTAGTCTTGAGCCTGGAC+CGG | 0.565735 | 3_3:-6701011 | Msa0440140:CDS |
| TAGGAGGACCAATGACATTG+TGG | 0.567117 | 3_3:-6698486 | Msa0440140:CDS |
| GACCTGGATGCCATTTGCAA+TGG | 0.568326 | 3_3:+6699643 | None:intergenic |
| ATTGTGGGGATTTAAAACTA+GGG | 0.569370 | 3_3:-6698470 | Msa0440140:CDS |
| AGTGTACATGTATGTTTGAT+GGG | 0.572245 | 3_3:-6697199 | Msa0440140:three_prime_UTR |
| CAAATAAAACCTTTCAGGAA+GGG | 0.576531 | 3_3:+6698537 | None:intergenic |
| TTCTTGTTGTGAGATGAAAG+TGG | 0.580234 | 3_3:+6701414 | None:intergenic |
| AAGCTGCCTTCTTACAGACC+TGG | 0.583945 | 3_3:+6699627 | None:intergenic |
| GTTCACGACGTGATAATTCG+CGG | 0.584170 | 3_3:-6701172 | Msa0440140:CDS |
| TTTGAAGTTCCTTTAAGTCG+AGG | 0.587862 | 3_3:+6699814 | None:intergenic |
| TAGCACCAGCAGAAATCCCT+AGG | 0.590152 | 3_3:+6698599 | None:intergenic |
| TCTCCAGTTTGTACCCTAGG+AGG | 0.590588 | 3_3:-6698502 | Msa0440140:CDS |
| AGACGGGAAAGTGGGGATTG+TGG | 0.590641 | 3_3:+6701262 | None:intergenic |
| CTGAACCTAGGGATTTCTGC+TGG | 0.592714 | 3_3:-6698604 | Msa0440140:CDS |
| CAAGCAACAGAGGTGAGTGT+AGG | 0.593637 | 3_3:-6699847 | Msa0440140:CDS |
| AACAGAAAGATCTCCTCCAA+TGG | 0.594114 | 3_3:+6698369 | None:intergenic |
| AAGGCATAGTTTCAGATTTG+GGG | 0.594960 | 3_3:-6697448 | Msa0440140:three_prime_UTR |
| CTAGCTCCGATGAAAGGCGT+CGG | 0.599493 | 3_3:+6701206 | None:intergenic |
| GAATCCTTCCGAACATCAGT+GGG | 0.600335 | 3_3:-6698202 | Msa0440140:CDS |
| GGTGATCGAAGCTGAACTTG+AGG | 0.602570 | 3_3:-6701128 | Msa0440140:CDS |
| GTCGCGGAGACGGGAAAGTG+GGG | 0.602663 | 3_3:+6701255 | None:intergenic |
| TGCACGAATAAGCTCTTGCA+TGG | 0.603292 | 3_3:+6701087 | None:intergenic |
| ACTAGTTCTTGGACTGGTGA+AGG | 0.604081 | 3_3:-6699940 | Msa0440140:CDS |
| ATTTACTGCTACATATGAAG+AGG | 0.604151 | 3_3:-6697323 | Msa0440140:three_prime_UTR |
| TGTTGTTGTTGATATTGTTG+AGG | 0.604313 | 3_3:-6700966 | Msa0440140:CDS |
| AGAATCCTTCCGAACATCAG+TGG | 0.606055 | 3_3:-6698203 | Msa0440140:CDS |
| CACCAGATAATCGAAGCTTG+CGG | 0.608933 | 3_3:-6699489 | Msa0440140:CDS |
| TTGTGGGGATTTAAAACTAG+GGG | 0.611302 | 3_3:-6698469 | Msa0440140:CDS |
| TTATGTAGGAGTTTGATGCT+CGG | 0.614579 | 3_3:-6698660 | Msa0440140:intron |
| ACATCCCACTGATGTTCGGA+AGG | 0.615809 | 3_3:+6698198 | None:intergenic |
| TTCATGAAACCATGTCCCCA+TGG | 0.620157 | 3_3:+6698571 | None:intergenic |
| ATTAGGTGGTTAAGAGAACA+CGG | 0.628876 | 3_3:-6698313 | Msa0440140:CDS |
| TGAAGTTCCTTTAAGTCGAG+GGG | 0.631807 | 3_3:+6699816 | None:intergenic |
| TGCTAGGCTTCAGAGTCTCG+GGG | 0.635479 | 3_3:-6701050 | Msa0440140:CDS |
| GGAGGACCAATGACATTGTG+GGG | 0.639686 | 3_3:-6698484 | Msa0440140:CDS |
| AAGGTGAGTGGTAGAAACAA+AGG | 0.640848 | 3_3:+6699522 | None:intergenic |
| TCATATGTAGCAGTAAATGA+GGG | 0.649578 | 3_3:+6697328 | None:intergenic |
| TTAGGTGGTTAAGAGAACAC+GGG | 0.649803 | 3_3:-6698312 | Msa0440140:CDS |
| CGGTGCAAACCAAGCAACAG+AGG | 0.652119 | 3_3:-6699857 | Msa0440140:CDS |
| TGTAAGGCCACCAAGGTGAG+TGG | 0.658835 | 3_3:+6699510 | None:intergenic |
| TGTAGCCGATGCTCATTGCA+TGG | 0.660775 | 3_3:-6697379 | Msa0440140:three_prime_UTR |
| ACGAATAAGCTCTTGCATGG+TGG | 0.668142 | 3_3:+6701090 | None:intergenic |
| TATCTGGTGTAAGGCCACCA+AGG | 0.677955 | 3_3:+6699503 | None:intergenic |
| TAATTGGAAGATCAAAAGAG+AGG | 0.678609 | 3_3:+6698332 | None:intergenic |
| ATAAGCACTTCTCTCCTCGG+AGG | 0.704080 | 3_3:-6698231 | Msa0440140:CDS |
| AAGGATTCTAGGAACCTCCG+AGG | 0.715500 | 3_3:+6698217 | None:intergenic |
| AAGCAGACTGAACATGATCG+TGG | 0.717200 | 3_3:-6697643 | Msa0440140:CDS |
| AGCATAAGCTAACCTCTAGG+CGG | 0.717256 | 3_3:+6698149 | None:intergenic |
| TGGTGTTTATACCAAACCCG+CGG | 0.722289 | 3_3:-6700918 | Msa0440140:intron |
| TAGGTGGTTAAGAGAACACG+GGG | 0.747643 | 3_3:-6698311 | Msa0440140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTAATACAAAAAATTATT+AGG | + | chr3_3:6698215-6698234 | None:intergenic | 10.0% |
| !!! | TTTTGTGAATAATATTAATT+AGG | - | chr3_3:6699331-6699350 | Msa0440140:intron | 10.0% |
| !!! | TTTTTTTTTTGATATTTTTC+TGG | - | chr3_3:6699920-6699939 | Msa0440140:CDS | 10.0% |
| !! | CAATTTCTTTATATTTAATT+AGG | - | chr3_3:6700497-6700516 | Msa0440140:intron | 10.0% |
| !!! | ATTTTTTGTTTTTTTGTTTT+AGG | - | chr3_3:6700537-6700556 | Msa0440140:intron | 10.0% |
| !!! | ATTTAGTCTTAATTTATATT+TGG | - | chr3_3:6700607-6700626 | Msa0440140:intron | 10.0% |
| !! | TTAACTTAAAGAATAACAAT+AGG | + | chr3_3:6699183-6699202 | None:intergenic | 15.0% |
| !!! | ACGTCATTAAATTTTAATAT+TGG | - | chr3_3:6699495-6699514 | Msa0440140:CDS | 15.0% |
| !! | TTAATTTATATTTGGACTTT+GGG | - | chr3_3:6700615-6700634 | Msa0440140:intron | 15.0% |
| !!! | GATTTTTGTACTAAAAATTT+AGG | - | chr3_3:6700785-6700804 | Msa0440140:intron | 15.0% |
| !!! | TTGTTGATGAATCATTTATT+AGG | - | chr3_3:6697746-6697765 | Msa0440140:intron | 20.0% |
| !! | AAAAACTATGAGAAACTATT+AGG | - | chr3_3:6697838-6697857 | Msa0440140:intron | 20.0% |
| !! | TTCTATCATAAACCATATTT+CGG | + | chr3_3:6697882-6697901 | None:intergenic | 20.0% |
| !!! | TCTGCATTAATTTTTTAGAA+AGG | - | chr3_3:6697951-6697970 | Msa0440140:intron | 20.0% |
| !!! | CTGCATTAATTTTTTAGAAA+GGG | - | chr3_3:6697952-6697971 | Msa0440140:intron | 20.0% |
| !!! | ATGATTTTAATCTTGTAGTT+GGG | - | chr3_3:6698238-6698257 | Msa0440140:CDS | 20.0% |
| !!! | CTGCTAATATTTTTTCAATT+TGG | - | chr3_3:6698637-6698656 | Msa0440140:CDS | 20.0% |
| !!! | ATTAAGTACAAAAACTTGTT+AGG | - | chr3_3:6698709-6698728 | Msa0440140:intron | 20.0% |
| !!! | AGTATACGTTTAAAATTGAT+AGG | - | chr3_3:6699043-6699062 | Msa0440140:intron | 20.0% |
| !!! | TGTTTTTTTGTTTTAGGTTT+AGG | - | chr3_3:6700543-6700562 | Msa0440140:intron | 20.0% |
| !! | CTTAATTTATATTTGGACTT+TGG | - | chr3_3:6700614-6700633 | Msa0440140:intron | 20.0% |
| !! | CAAATCTTAAGGAAAATAAA+AGG | + | chr3_3:6700660-6700679 | None:intergenic | 20.0% |
| !!! | CTTTTATTTTCCTTAAGATT+TGG | - | chr3_3:6700658-6700677 | Msa0440140:intron | 20.0% |
| !! | AGGACAATGTTATTAGTTTA+AGG | - | chr3_3:6697766-6697785 | Msa0440140:intron | 25.0% |
| !! | GGACAATGTTATTAGTTTAA+GGG | - | chr3_3:6697767-6697786 | Msa0440140:intron | 25.0% |
| !! | TAGTTTCTCATAGTTTTTCT+AGG | + | chr3_3:6697836-6697855 | None:intergenic | 25.0% |
| !!! | CATGATTTTAATCTTGTAGT+TGG | - | chr3_3:6698237-6698256 | Msa0440140:CDS | 25.0% |
| !! | TTGAGGTTTAAAGTGTTAAA+AGG | - | chr3_3:6698417-6698436 | Msa0440140:CDS | 25.0% |
| !! | TTAAAGTGTTAAAAGGAATC+AGG | - | chr3_3:6698424-6698443 | Msa0440140:CDS | 25.0% |
| ! | GACTAAAACAACAATTATCA+AGG | + | chr3_3:6698557-6698576 | None:intergenic | 25.0% |
| !!! | TACAAAAACTTGTTAGGTTA+TGG | - | chr3_3:6698715-6698734 | Msa0440140:intron | 25.0% |
| !! | GGTTAAAACTAGATTTGTTT+GGG | - | chr3_3:6699367-6699386 | Msa0440140:intron | 25.0% |
| ! | TATAGGTATTTGTTTCACTT+GGG | - | chr3_3:6699533-6699552 | Msa0440140:CDS | 25.0% |
| ! | GTTAAAGTCTATGTTGAAAT+TGG | - | chr3_3:6699782-6699801 | Msa0440140:CDS | 25.0% |
| ! | AGATTATAACAAGTTGTTAC+TGG | - | chr3_3:6699854-6699873 | Msa0440140:CDS | 25.0% |
| ! | AGAAATATTAAGATGCATGA+GGG | + | chr3_3:6699888-6699907 | None:intergenic | 25.0% |
| ! | AAGAAATATTAAGATGCATG+AGG | + | chr3_3:6699889-6699908 | None:intergenic | 25.0% |
| !! | CTTGTTTGACTTATTTATGT+AGG | - | chr3_3:6699948-6699967 | Msa0440140:intron | 25.0% |
| ! | CTGTATTATAAAACCCAAAA+GGG | + | chr3_3:6699996-6700015 | None:intergenic | 25.0% |
| ! | TTTATATTTAATTAGGCAGC+AGG | - | chr3_3:6700504-6700523 | Msa0440140:intron | 25.0% |
| !!! | TTTTTGTTTTAGGTTTAGGA+AGG | - | chr3_3:6700547-6700566 | Msa0440140:intron | 25.0% |
| ! | AGGGAAATATACTGAAATTA+GGG | - | chr3_3:6700582-6700601 | Msa0440140:intron | 25.0% |
| !!! | TTTGGTGCAGATAATTTTAT+GGG | + | chr3_3:6700709-6700728 | None:intergenic | 25.0% |
| !!! | TTTTGGTGCAGATAATTTTA+TGG | + | chr3_3:6700710-6700729 | None:intergenic | 25.0% |
| ! | AACAATCAATTGTGCTTTAA+TGG | - | chr3_3:6700810-6700829 | Msa0440140:intron | 25.0% |
| ! | TGAATTTTCCATGATTCGAT+CGG | + | chr3_3:6697256-6697275 | None:intergenic | 30.0% |
| ACAACAACATTTGCAGTATT+GGG | + | chr3_3:6697645-6697664 | None:intergenic | 30.0% | |
| AACAACAACATTTGCAGTAT+TGG | + | chr3_3:6697646-6697665 | None:intergenic | 30.0% | |
| ! | TGTTGTTGTTGATATTGTTG+AGG | - | chr3_3:6697656-6697675 | Msa0440140:CDS | 30.0% |
| ! | AAAAGAACAAGATTTTACCG+CGG | + | chr3_3:6697724-6697743 | None:intergenic | 30.0% |
| ! | ATTAGTTTAAGGGTATGTGA+AGG | - | chr3_3:6697777-6697796 | Msa0440140:intron | 30.0% |
| ! | TTAGTTTAAGGGTATGTGAA+GGG | - | chr3_3:6697778-6697797 | Msa0440140:intron | 30.0% |
| ATTAGGAAAGATTAACGAGT+TGG | - | chr3_3:6697855-6697874 | Msa0440140:intron | 30.0% | |
| TAGAACATTATAGCGTCATT+TGG | - | chr3_3:6698016-6698035 | Msa0440140:intron | 30.0% | |
| !!! | TGGTTTTATATGGTCATTCT+TGG | - | chr3_3:6698106-6698125 | Msa0440140:intron | 30.0% |
| !! | GGTTTTATATGGTCATTCTT+GGG | - | chr3_3:6698107-6698126 | Msa0440140:intron | 30.0% |
| !!! | TGGTTTTATATGGTCATTCT+TGG | - | chr3_3:6698106-6698125 | Msa0440140:intron | 30.0% |
| !! | GGTTTTATATGGTCATTCTT+GGG | - | chr3_3:6698107-6698126 | Msa0440140:intron | 30.0% |
| !! | TATTTTAGGGAGTGACATAT+TGG | - | chr3_3:6698351-6698370 | Msa0440140:CDS | 30.0% |
| ACTTAAAGGAACTTCAAATC+CGG | - | chr3_3:6698813-6698832 | Msa0440140:intron | 30.0% | |
| ! | CAAAAGTGTATGTCAAATCA+TGG | + | chr3_3:6698939-6698958 | None:intergenic | 30.0% |
| ! | CATGATTTGACATACACTTT+TGG | - | chr3_3:6698937-6698956 | Msa0440140:intron | 30.0% |
| ! | ATTTGACATACACTTTTGGA+TGG | - | chr3_3:6698941-6698960 | Msa0440140:intron | 30.0% |
| !!! | CAGGTTATTAGGTTTTATTC+AGG | + | chr3_3:6699231-6699250 | None:intergenic | 30.0% |
| AACTTAACAGACAGGTTATT+AGG | + | chr3_3:6699242-6699261 | None:intergenic | 30.0% | |
| TGCTATATAACTTAACAGAC+AGG | + | chr3_3:6699250-6699269 | None:intergenic | 30.0% | |
| !!! | AAATCTAGTTTTAACCCTGA+CGG | + | chr3_3:6699363-6699382 | None:intergenic | 30.0% |
| ! | GGGTTAAAACTAGATTTGTT+TGG | - | chr3_3:6699366-6699385 | Msa0440140:intron | 30.0% |
| ! | CACTATAGATTTTCTGCTAT+TGG | + | chr3_3:6699450-6699469 | None:intergenic | 30.0% |
| TTAATGACGTCAAGATAGAT+AGG | + | chr3_3:6699485-6699504 | None:intergenic | 30.0% | |
| ! | GGTTATTGTACAAAGAGTAT+AGG | - | chr3_3:6699516-6699535 | Msa0440140:CDS | 30.0% |
| GTATAGGTATTTGTTTCACT+TGG | - | chr3_3:6699532-6699551 | Msa0440140:CDS | 30.0% | |
| TACTTTCATATTGCATAGGA+AGG | + | chr3_3:6699564-6699583 | None:intergenic | 30.0% | |
| TGTGTACTTTCATATTGCAT+AGG | + | chr3_3:6699568-6699587 | None:intergenic | 30.0% | |
| TCACACTATTCAGAAGATAT+TGG | - | chr3_3:6699639-6699658 | Msa0440140:CDS | 30.0% | |
| TTAGAGTAAATGCTAAACAC+TGG | - | chr3_3:6699824-6699843 | Msa0440140:CDS | 30.0% | |
| TAGAGTAAATGCTAAACACT+GGG | - | chr3_3:6699825-6699844 | Msa0440140:CDS | 30.0% | |
| GCTGTATTATAAAACCCAAA+AGG | + | chr3_3:6699997-6700016 | None:intergenic | 30.0% | |
| AAATAAAACCTTTCAGGAAG+GGG | + | chr3_3:6700087-6700106 | None:intergenic | 30.0% | |
| CAAATAAAACCTTTCAGGAA+GGG | + | chr3_3:6700088-6700107 | None:intergenic | 30.0% | |
| !!! | CTTCCTGAAAGGTTTTATTT+GGG | - | chr3_3:6700087-6700106 | Msa0440140:intron | 30.0% |
| ! | ATTGTGGGGATTTAAAACTA+GGG | - | chr3_3:6700152-6700171 | Msa0440140:intron | 30.0% |
| ACAATAGTGATTCCTCTAAA+TGG | - | chr3_3:6700226-6700245 | Msa0440140:intron | 30.0% | |
| CAATAGTGATTCCTCTAAAT+GGG | - | chr3_3:6700227-6700246 | Msa0440140:intron | 30.0% | |
| TAATTGGAAGATCAAAAGAG+AGG | + | chr3_3:6700293-6700312 | None:intergenic | 30.0% | |
| ! | TCTCTTTTGATCTTCCAATT+AGG | - | chr3_3:6700292-6700311 | Msa0440140:intron | 30.0% |
| GAGGGAAATATACTGAAATT+AGG | - | chr3_3:6700581-6700600 | Msa0440140:intron | 30.0% | |
| CAATTCAGAACCAAATCTTA+AGG | + | chr3_3:6700671-6700690 | None:intergenic | 30.0% | |
| AAACAGTGAATGCCAAATTA+GGG | + | chr3_3:6700879-6700898 | None:intergenic | 30.0% | |
| AAAACAGTGAATGCCAAATT+AGG | + | chr3_3:6700880-6700899 | None:intergenic | 30.0% | |
| TCATGGAAAGTCTTGATAAA+AGG | + | chr3_3:6700906-6700925 | None:intergenic | 30.0% | |
| ! | GATATACTTTTCACTGTTTC+AGG | - | chr3_3:6700936-6700955 | Msa0440140:CDS | 30.0% |
| ! | ATCGTGGTAAAAATGGATTT+AGG | - | chr3_3:6700995-6701014 | Msa0440140:CDS | 30.0% |
| ! | AGTCTGGATTTTAAATGACA+AGG | + | chr3_3:6701142-6701161 | None:intergenic | 30.0% |
| ! | CCTTTTCTTAATTTTCAGTC+TGG | + | chr3_3:6701158-6701177 | None:intergenic | 30.0% |
| CCAGACTGAAAATTAAGAAA+AGG | - | chr3_3:6701155-6701174 | Msa0440140:CDS | 30.0% | |
| ! | AAAAGGCATAGTTTCAGATT+TGG | - | chr3_3:6701172-6701191 | Msa0440140:CDS | 30.0% |
| ! | AAAGGCATAGTTTCAGATTT+GGG | - | chr3_3:6701173-6701192 | Msa0440140:CDS | 30.0% |
| ! | TTTCAGATTTGGGGATTTTT+AGG | - | chr3_3:6701183-6701202 | Msa0440140:CDS | 30.0% |
| !! | TTTGGGGATTTTTAGGAATT+AGG | - | chr3_3:6701190-6701209 | Msa0440140:CDS | 30.0% |
| TCATATGTAGCAGTAAATGA+GGG | + | chr3_3:6701297-6701316 | None:intergenic | 30.0% | |
| TTCATATGTAGCAGTAAATG+AGG | + | chr3_3:6701298-6701317 | None:intergenic | 30.0% | |
| ATTTACTGCTACATATGAAG+AGG | - | chr3_3:6701299-6701318 | Msa0440140:CDS | 30.0% | |
| ! | ATAACTCCTAACATTGATTG+AGG | - | chr3_3:6701376-6701395 | Msa0440140:exon | 30.0% |
| TAGTGTACATGTATGTTTGA+TGG | - | chr3_3:6701422-6701441 | Msa0440140:five_prime_UTR | 30.0% | |
| AGTGTACATGTATGTTTGAT+GGG | - | chr3_3:6701423-6701442 | Msa0440140:five_prime_UTR | 30.0% | |
| ! | TTCTTGTTGTGAGATGAAAG+TGG | + | chr3_3:6697211-6697230 | None:intergenic | 35.0% |
| ! | ACTTCTTCTTCTTTGGGTTT+GGG | + | chr3_3:6697294-6697313 | None:intergenic | 35.0% |
| !! | TCGTTGACTTCTTCTTCTTT+GGG | + | chr3_3:6697300-6697319 | None:intergenic | 35.0% |
| !! | TTCGTTGACTTCTTCTTCTT+TGG | + | chr3_3:6697301-6697320 | None:intergenic | 35.0% |
| !!! | GGGTTTCGAGTTTGAATTTT+TGG | + | chr3_3:6697392-6697411 | None:intergenic | 35.0% |
| CAACACGAAAACCAAAGATT+GGG | - | chr3_3:6697473-6697492 | Msa0440140:three_prime_UTR | 35.0% | |
| !! | AGTAGAGTTTCTGGTGAATT+TGG | - | chr3_3:6697684-6697703 | Msa0440140:intron | 35.0% |
| ! | AAAGAACAAGATTTTACCGC+GGG | + | chr3_3:6697723-6697742 | None:intergenic | 35.0% |
| !!! | AGACTAGGGTTGGTTTTATA+TGG | - | chr3_3:6698096-6698115 | Msa0440140:intron | 35.0% |
| TTATATGGTCATTCTTGGGT+TGG | - | chr3_3:6698111-6698130 | Msa0440140:intron | 35.0% | |
| !!! | AGACTAGGGTTGGTTTTATA+TGG | - | chr3_3:6698096-6698115 | Msa0440140:intron | 35.0% |
| !! | GGGGTTAGTGTTGTATTTTA+GGG | - | chr3_3:6698338-6698357 | Msa0440140:CDS | 35.0% |
| ! | TATTGGTTGACAATGCTCTA+TGG | - | chr3_3:6698368-6698387 | Msa0440140:CDS | 35.0% |
| !! | ACGTACAATGACACTTTTTG+AGG | - | chr3_3:6698400-6698419 | Msa0440140:CDS | 35.0% |
| !!! | TGTTTTAGTCCTTGTTCTGT+TGG | - | chr3_3:6698567-6698586 | Msa0440140:CDS | 35.0% |
| ATACAGTTTCCAACAGAACA+AGG | + | chr3_3:6698579-6698598 | None:intergenic | 35.0% | |
| TGTTAGGTTATGGTGATCTA+TGG | - | chr3_3:6698725-6698744 | Msa0440140:intron | 35.0% | |
| GTTAGGTTATGGTGATCTAT+GGG | - | chr3_3:6698726-6698745 | Msa0440140:intron | 35.0% | |
| TTGAAGTTCCTTTAAGTCGA+GGG | + | chr3_3:6698810-6698829 | None:intergenic | 35.0% | |
| ! | TTTGAAGTTCCTTTAAGTCG+AGG | + | chr3_3:6698811-6698830 | None:intergenic | 35.0% |
| TTCGTACAAAGAGCAATTGT+TGG | - | chr3_3:6698882-6698901 | Msa0440140:intron | 35.0% | |
| TCGTACAAAGAGCAATTGTT+GGG | - | chr3_3:6698883-6698902 | Msa0440140:intron | 35.0% | |
| ATAGGAGAAACTCACCAATT+AGG | - | chr3_3:6699061-6699080 | Msa0440140:intron | 35.0% | |
| !!! | AGGTTTTATTCAGGATGCAT+AGG | + | chr3_3:6699222-6699241 | None:intergenic | 35.0% |
| TTAATTAGGATTACTCCGTC+AGG | - | chr3_3:6699345-6699364 | Msa0440140:intron | 35.0% | |
| TAATTAGGATTACTCCGTCA+GGG | - | chr3_3:6699346-6699365 | Msa0440140:intron | 35.0% | |
| ! | AAACTAGATTTGTTTGGGCA+TGG | - | chr3_3:6699372-6699391 | Msa0440140:intron | 35.0% |
| ! | AACTAGATTTGTTTGGGCAT+GGG | - | chr3_3:6699373-6699392 | Msa0440140:intron | 35.0% |
| ! | CTGAATTTTTCATGTGTCCA+AGG | + | chr3_3:6699411-6699430 | None:intergenic | 35.0% |
| CACATGAAAAATTCAGAACC+TGG | - | chr3_3:6699415-6699434 | Msa0440140:intron | 35.0% | |
| !!! | CACATTTAGTTTTCATGAGC+AGG | - | chr3_3:6699584-6699603 | Msa0440140:CDS | 35.0% |
| TATTCAGAAGATATTGGCAG+TGG | - | chr3_3:6699645-6699664 | Msa0440140:CDS | 35.0% | |
| AGAGTAAATGCTAAACACTG+GGG | - | chr3_3:6699826-6699845 | Msa0440140:CDS | 35.0% | |
| TTATGTAGGAGTTTGATGCT+CGG | - | chr3_3:6699962-6699981 | Msa0440140:intron | 35.0% | |
| ! | TATAATACAGCACTGAACCT+AGG | - | chr3_3:6700006-6700025 | Msa0440140:intron | 35.0% |
| ! | ATAATACAGCACTGAACCTA+GGG | - | chr3_3:6700007-6700026 | Msa0440140:intron | 35.0% |
| CCAAATAAAACCTTTCAGGA+AGG | + | chr3_3:6700089-6700108 | None:intergenic | 35.0% | |
| !!! | CCTTCCTGAAAGGTTTTATT+TGG | - | chr3_3:6700086-6700105 | Msa0440140:intron | 35.0% |
| TTAAATCCCCACAATGTCAT+TGG | + | chr3_3:6700147-6700166 | None:intergenic | 35.0% | |
| ! | CATTGTGGGGATTTAAAACT+AGG | - | chr3_3:6700151-6700170 | Msa0440140:intron | 35.0% |
| ! | TTGTGGGGATTTAAAACTAG+GGG | - | chr3_3:6700153-6700172 | Msa0440140:intron | 35.0% |
| ! | GGATTTAAAACTAGGGGATT+AGG | - | chr3_3:6700159-6700178 | Msa0440140:intron | 35.0% |
| ! | CTTTTGATCTTCCAATTAGG+TGG | - | chr3_3:6700295-6700314 | Msa0440140:intron | 35.0% |
| TGTTCTCTTAACCACCTAAT+TGG | + | chr3_3:6700309-6700328 | None:intergenic | 35.0% | |
| ATTAGGTGGTTAAGAGAACA+CGG | - | chr3_3:6700309-6700328 | Msa0440140:intron | 35.0% | |
| AATATAAGCACTTCTCTCCT+CGG | - | chr3_3:6700388-6700407 | Msa0440140:intron | 35.0% | |
| !!! | TTGTTTTAGGTTTAGGAAGG+TGG | - | chr3_3:6700550-6700569 | Msa0440140:intron | 35.0% |
| !!! | TGTTTTAGGTTTAGGAAGGT+GGG | - | chr3_3:6700551-6700570 | Msa0440140:intron | 35.0% |
| TTTATATTTGGACTTTGGGC+TGG | - | chr3_3:6700619-6700638 | Msa0440140:intron | 35.0% | |
| !! | TTCACAACAAGAGCACATTT+TGG | + | chr3_3:6700727-6700746 | None:intergenic | 35.0% |
| AACAGTGAATGCCAAATTAG+GGG | + | chr3_3:6700878-6700897 | None:intergenic | 35.0% | |
| GTATATCAGCGAAGAAATCA+TGG | + | chr3_3:6700923-6700942 | None:intergenic | 35.0% | |
| GAACATGATCGTGGTAAAAA+TGG | - | chr3_3:6700988-6701007 | Msa0440140:CDS | 35.0% | |
| AAGGCATAGTTTCAGATTTG+GGG | - | chr3_3:6701174-6701193 | Msa0440140:CDS | 35.0% | |
| ! | TAGGTTTTTGAATTACCCTG+TGG | - | chr3_3:6701209-6701228 | Msa0440140:CDS | 35.0% |
| ! | AGGTTTTTGAATTACCCTGT+GGG | - | chr3_3:6701210-6701229 | Msa0440140:CDS | 35.0% |
| TTCCAAAACCGATCGAATCA+TGG | - | chr3_3:6697245-6697264 | Msa0440140:three_prime_UTR | 40.0% | |
| !! | TTCCATGATTCGATCGGTTT+TGG | + | chr3_3:6697250-6697269 | None:intergenic | 40.0% |
| ! | CTTTGGGTTTGGGATTGTTA+GGG | + | chr3_3:6697284-6697303 | None:intergenic | 40.0% |
| ! | TCTTTGGGTTTGGGATTGTT+AGG | + | chr3_3:6697285-6697304 | None:intergenic | 40.0% |
| ! | GACTTCTTCTTCTTTGGGTT+TGG | + | chr3_3:6697295-6697314 | None:intergenic | 40.0% |
| !!! | CGAGTTTGAATTTTTGGTCG+CGG | + | chr3_3:6697386-6697405 | None:intergenic | 40.0% |
| GAATTATCACGTCGTGAACT+CGG | + | chr3_3:6697449-6697468 | None:intergenic | 40.0% | |
| GCAACACGAAAACCAAAGAT+TGG | - | chr3_3:6697472-6697491 | Msa0440140:three_prime_UTR | 40.0% | |
| !! | AGTAAGATTAGTCTTGAGCC+TGG | - | chr3_3:6697606-6697625 | Msa0440140:CDS | 40.0% |
| ! | TATGTGAAGGGCATGGATTA+AGG | - | chr3_3:6697790-6697809 | Msa0440140:intron | 40.0% |
| AAGGAGAGTAGATCAGATAG+AGG | - | chr3_3:6697809-6697828 | Msa0440140:intron | 40.0% | |
| ! | TAACGAGTTGGACCGAAATA+TGG | - | chr3_3:6697867-6697886 | Msa0440140:intron | 40.0% |
| CAGACACTTCAACAACTAAG+TGG | + | chr3_3:6697935-6697954 | None:intergenic | 40.0% | |
| ! | AAGTCTTATCCTGCTAAGTG+GGG | + | chr3_3:6698055-6698074 | None:intergenic | 40.0% |
| ! | CAAGTCTTATCCTGCTAAGT+GGG | + | chr3_3:6698056-6698075 | None:intergenic | 40.0% |
| ! | TTAGCAGGATAAGACTTGGT+TGG | - | chr3_3:6698058-6698077 | Msa0440140:intron | 40.0% |
| !! | ATAAGACTTGGTTGGTGTTG+TGG | - | chr3_3:6698066-6698085 | Msa0440140:intron | 40.0% |
| !! | GGGTTTGCTAGAACTAGAAT+AGG | - | chr3_3:6698258-6698277 | Msa0440140:CDS | 40.0% |
| !! | GGGGGTTAGTGTTGTATTTT+AGG | - | chr3_3:6698337-6698356 | Msa0440140:CDS | 40.0% |
| AATCAGGCATATCTGCTACA+TGG | - | chr3_3:6698440-6698459 | Msa0440140:CDS | 40.0% | |
| GCATAAAAGCTCGCATTAAG+AGG | + | chr3_3:6698466-6698485 | None:intergenic | 40.0% | |
| ! | GAACTAGTCTGCAAAAGCAT+TGG | + | chr3_3:6698670-6698689 | None:intergenic | 40.0% |
| !! | TGCTTTTGCAGACTAGTTCT+TGG | - | chr3_3:6698671-6698690 | Msa0440140:intron | 40.0% |
| TGATCTATGGGATGCTTCTT+TGG | - | chr3_3:6698738-6698757 | Msa0440140:intron | 40.0% | |
| TTATATGCCCCTCGACTTAA+AGG | - | chr3_3:6698799-6698818 | Msa0440140:intron | 40.0% | |
| TGAAGTTCCTTTAAGTCGAG+GGG | + | chr3_3:6698809-6698828 | None:intergenic | 40.0% | |
| CTTCAAATCCGGTTATTGCA+CGG | - | chr3_3:6698824-6698843 | Msa0440140:intron | 40.0% | |
| AGAAAACTCCTGCCAATCTT+GGG | + | chr3_3:6698863-6698882 | None:intergenic | 40.0% | |
| AAGAAAACTCCTGCCAATCT+TGG | + | chr3_3:6698864-6698883 | None:intergenic | 40.0% | |
| ! | TTTTGGATGGCGTACCTTAA+CGG | - | chr3_3:6698954-6698973 | Msa0440140:intron | 40.0% |
| CATTTGCAATGGATCCGTTA+AGG | + | chr3_3:6698971-6698990 | None:intergenic | 40.0% | |
| ! | CTTAACGGATCCATTGCAAA+TGG | - | chr3_3:6698969-6698988 | Msa0440140:intron | 40.0% |
| ! | ACAAAGGCAAGTCCTTTTGT+GGG | + | chr3_3:6699087-6699106 | None:intergenic | 40.0% |
| ! | AACAAAGGCAAGTCCTTTTG+TGG | + | chr3_3:6699088-6699107 | None:intergenic | 40.0% |
| AAGGTGAGTGGTAGAAACAA+AGG | + | chr3_3:6699103-6699122 | None:intergenic | 40.0% | |
| !! | TTTGTTTCTACCACTCACCT+TGG | - | chr3_3:6699102-6699121 | Msa0440140:intron | 40.0% |
| AGCTTCGATTATCTGGTGTA+AGG | + | chr3_3:6699131-6699150 | None:intergenic | 40.0% | |
| ! | TGAAATAGCTCTGTGAGTAC+TGG | - | chr3_3:6699283-6699302 | Msa0440140:intron | 40.0% |
| ! | TTTTCATGTGTCCAAGGAGA+TGG | + | chr3_3:6699405-6699424 | None:intergenic | 40.0% |
| AGGTATTTGTTTCACTTGGG+TGG | - | chr3_3:6699536-6699555 | Msa0440140:CDS | 40.0% | |
| GGTATTTGTTTCACTTGGGT+GGG | - | chr3_3:6699537-6699556 | Msa0440140:CDS | 40.0% | |
| GTATTTGTTTCACTTGGGTG+GGG | - | chr3_3:6699538-6699557 | Msa0440140:CDS | 40.0% | |
| GCAACCTTCTACTTCTTTAG+CGG | - | chr3_3:6699691-6699710 | Msa0440140:CDS | 40.0% | |
| CAACCTTCTACTTCTTTAGC+GGG | - | chr3_3:6699692-6699711 | Msa0440140:CDS | 40.0% | |
| AACCTTCTACTTCTTTAGCG+GGG | - | chr3_3:6699693-6699712 | Msa0440140:CDS | 40.0% | |
| GAGTAAATGCTAAACACTGG+GGG | - | chr3_3:6699827-6699846 | Msa0440140:CDS | 40.0% | |
| !!! | TGCTGGTGCTATTTTTCCAT+GGG | - | chr3_3:6700035-6700054 | Msa0440140:intron | 40.0% |
| CCACCCAAATAAAACCTTTC+AGG | + | chr3_3:6700093-6700112 | None:intergenic | 40.0% | |
| !!! | CCTGAAAGGTTTTATTTGGG+TGG | - | chr3_3:6700090-6700109 | Msa0440140:intron | 40.0% |
| AACAGAAAGATCTCCTCCAA+TGG | + | chr3_3:6700256-6700275 | None:intergenic | 40.0% | |
| TTAGGTGGTTAAGAGAACAC+GGG | - | chr3_3:6700310-6700329 | Msa0440140:intron | 40.0% | |
| !! | GTTCATGGTCATGTTTTTGC+TGG | - | chr3_3:6700333-6700352 | Msa0440140:intron | 40.0% |
| TGAAGCATAAGCTAACCTCT+AGG | + | chr3_3:6700479-6700498 | None:intergenic | 40.0% | |
| !!! | GTTTTAGGTTTAGGAAGGTG+GGG | - | chr3_3:6700552-6700571 | Msa0440140:intron | 40.0% |
| !!! | TTTTAGGTTTAGGAAGGTGG+GGG | - | chr3_3:6700553-6700572 | Msa0440140:intron | 40.0% |
| ACAGTGAATGCCAAATTAGG+GGG | + | chr3_3:6700877-6700896 | None:intergenic | 40.0% | |
| ! | GGTTTTTGAATTACCCTGTG+GGG | - | chr3_3:6701211-6701230 | Msa0440140:CDS | 40.0% |
| ! | GTTTTTGAATTACCCTGTGG+GGG | - | chr3_3:6701212-6701231 | Msa0440140:CDS | 40.0% |
| CATATGAAGAGGCCTCAATT+TGG | - | chr3_3:6701310-6701329 | Msa0440140:CDS | 40.0% | |
| GAGTTCTCAATGCCAAATTG+AGG | + | chr3_3:6701325-6701344 | None:intergenic | 40.0% | |
| GCATGACCTCAATCAATGTT+AGG | + | chr3_3:6701385-6701404 | None:intergenic | 40.0% | |
| !!! | ATCGGTTTTGGAAGCGGTTT+TGG | + | chr3_3:6697238-6697257 | None:intergenic | 45.0% |
| !!! | GATTCGATCGGTTTTGGAAG+CGG | + | chr3_3:6697244-6697263 | None:intergenic | 45.0% |
| ! | GGTTTGGGATTGTTAGGGTT+TGG | + | chr3_3:6697279-6697298 | None:intergenic | 45.0% |
| !!! | TGAATTTTTGGTCGCGGAGA+CGG | + | chr3_3:6697380-6697399 | None:intergenic | 45.0% |
| TTGGAACTAGCTCCGATGAA+AGG | + | chr3_3:6697425-6697444 | None:intergenic | 45.0% | |
| GTTCACGACGTGATAATTCG+CGG | - | chr3_3:6697450-6697469 | Msa0440140:three_prime_UTR | 45.0% | |
| AGCTTCGATCACCCAATCTT+TGG | + | chr3_3:6697487-6697506 | None:intergenic | 45.0% | |
| GTGATCGAAGCTGAACTTGA+GGG | - | chr3_3:6697495-6697514 | Msa0440140:three_prime_UTR | 45.0% | |
| ACGAATAAGCTCTTGCATGG+TGG | + | chr3_3:6697535-6697554 | None:intergenic | 45.0% | |
| TGCACGAATAAGCTCTTGCA+TGG | + | chr3_3:6697538-6697557 | None:intergenic | 45.0% | |
| AAGCCTAGCAAGCACAATCT+CGG | + | chr3_3:6697562-6697581 | None:intergenic | 45.0% | |
| TGGTGTTTATACCAAACCCG+CGG | - | chr3_3:6697704-6697723 | Msa0440140:intron | 45.0% | |
| ! | ACAAGATTTTACCGCGGGTT+TGG | + | chr3_3:6697718-6697737 | None:intergenic | 45.0% |
| ! | TTAAGGGTATGTGAAGGGCA+TGG | - | chr3_3:6697783-6697802 | Msa0440140:intron | 45.0% |
| CTTCAACAACTAAGTGGCGT+TGG | + | chr3_3:6697929-6697948 | None:intergenic | 45.0% | |
| ! | CCAAGTCTTATCCTGCTAAG+TGG | + | chr3_3:6698057-6698076 | None:intergenic | 45.0% |
| CCACTTAGCAGGATAAGACT+TGG | - | chr3_3:6698054-6698073 | Msa0440140:intron | 45.0% | |
| TGTTGTGGATAGCAGAGACT+AGG | - | chr3_3:6698081-6698100 | Msa0440140:intron | 45.0% | |
| GTTGTGGATAGCAGAGACTA+GGG | - | chr3_3:6698082-6698101 | Msa0440140:intron | 45.0% | |
| !! | TTGGGTTGGTTAGCAGACTA+GGG | - | chr3_3:6698125-6698144 | Msa0440140:intron | 45.0% |
| ! | GGTCATTCTTGGGAAGCTTT+TGG | - | chr3_3:6698160-6698179 | Msa0440140:intron | 45.0% |
| AACCCATTCTTCCTCACCTT+GGG | - | chr3_3:6698306-6698325 | Msa0440140:CDS | 45.0% | |
| TGGTTGACAATGCTCTATGG+AGG | - | chr3_3:6698371-6698390 | Msa0440140:CDS | 45.0% | |
| ! | GCTGACTAGTTAGTTCTTGC+TGG | - | chr3_3:6698607-6698626 | Msa0440140:CDS | 45.0% |
| ! | TTGCAGACTAGTTCTTGGAC+TGG | - | chr3_3:6698676-6698695 | Msa0440140:intron | 45.0% |
| !! | ACTAGTTCTTGGACTGGTGA+AGG | - | chr3_3:6698682-6698701 | Msa0440140:intron | 45.0% |
| ! | TGGGATGCTTCTTTGGCTTA+CGG | - | chr3_3:6698745-6698764 | Msa0440140:intron | 45.0% |
| AAGCAACAGAGGTGAGTGTA+GGG | - | chr3_3:6698776-6698795 | Msa0440140:intron | 45.0% | |
| TGTCCATGCTTTCCCAAGAT+TGG | - | chr3_3:6698848-6698867 | Msa0440140:intron | 45.0% | |
| CAATTGTTGGGCATGTCTCT+TGG | - | chr3_3:6698895-6698914 | Msa0440140:intron | 45.0% | |
| ATCCATTGCAAATGGCATCC+AGG | - | chr3_3:6698977-6698996 | Msa0440140:intron | 45.0% | |
| TCACCAATTAGGCCCACAAA+AGG | - | chr3_3:6699072-6699091 | Msa0440140:intron | 45.0% | |
| ! | AGTCCTTTTGTGGGCCTAAT+TGG | + | chr3_3:6699078-6699097 | None:intergenic | 45.0% |
| CACCAGATAATCGAAGCTTG+CGG | - | chr3_3:6699133-6699152 | Msa0440140:intron | 45.0% | |
| AACCGCAAGCTTCGATTATC+TGG | + | chr3_3:6699138-6699157 | None:intergenic | 45.0% | |
| ACCTTCTACTTCTTTAGCGG+GGG | - | chr3_3:6699694-6699713 | Msa0440140:CDS | 45.0% | |
| AAATGCTAAACACTGGGGGA+TGG | - | chr3_3:6699831-6699850 | Msa0440140:CDS | 45.0% | |
| !!! | CTGCTGGTGCTATTTTTCCA+TGG | - | chr3_3:6700034-6700053 | Msa0440140:intron | 45.0% |
| !!! | GCTGGTGCTATTTTTCCATG+GGG | - | chr3_3:6700036-6700055 | Msa0440140:intron | 45.0% |
| !!! | GCTATTTTTCCATGGGGACA+TGG | - | chr3_3:6700042-6700061 | Msa0440140:intron | 45.0% |
| TTCATGAAACCATGTCCCCA+TGG | + | chr3_3:6700054-6700073 | None:intergenic | 45.0% | |
| TTCTCTCCAGTTTGTACCCT+AGG | - | chr3_3:6700117-6700136 | Msa0440140:intron | 45.0% | |
| CAATGTCATTGGTCCTCCTA+GGG | + | chr3_3:6700136-6700155 | None:intergenic | 45.0% | |
| ACAATGTCATTGGTCCTCCT+AGG | + | chr3_3:6700137-6700156 | None:intergenic | 45.0% | |
| TAGGAGGACCAATGACATTG+TGG | - | chr3_3:6700136-6700155 | Msa0440140:intron | 45.0% | |
| AGGAGGACCAATGACATTGT+GGG | - | chr3_3:6700137-6700156 | Msa0440140:intron | 45.0% | |
| ACATCTCTGCTTTGTCTTCG+TGG | + | chr3_3:6700195-6700214 | None:intergenic | 45.0% | |
| TCCTCTAAATGGGACTCCAT+TGG | - | chr3_3:6700237-6700256 | Msa0440140:intron | 45.0% | |
| TCCAATGGAGTCCCATTTAG+AGG | + | chr3_3:6700241-6700260 | None:intergenic | 45.0% | |
| TCTAAATGGGACTCCATTGG+AGG | - | chr3_3:6700240-6700259 | Msa0440140:intron | 45.0% | |
| TAGGTGGTTAAGAGAACACG+GGG | - | chr3_3:6700311-6700330 | Msa0440140:intron | 45.0% | |
| TTAAGAGAACACGGGGTTCA+TGG | - | chr3_3:6700318-6700337 | Msa0440140:intron | 45.0% | |
| !! | GTCATGTTTTTGCTGGTGCT+GGG | - | chr3_3:6700340-6700359 | Msa0440140:intron | 45.0% |
| CTGATGTTCGGAAGGATTCT+AGG | + | chr3_3:6700419-6700438 | None:intergenic | 45.0% | |
| AGAATCCTTCCGAACATCAG+TGG | - | chr3_3:6700419-6700438 | Msa0440140:intron | 45.0% | |
| GAATCCTTCCGAACATCAGT+GGG | - | chr3_3:6700420-6700439 | Msa0440140:intron | 45.0% | |
| ATCCACATCCCACTGATGTT+CGG | + | chr3_3:6700431-6700450 | None:intergenic | 45.0% | |
| TCTAGGCGGAAAAGACTAGT+AGG | + | chr3_3:6700462-6700481 | None:intergenic | 45.0% | |
| !!! | TACTAGTCTTTTCCGCCTAG+AGG | - | chr3_3:6700461-6700480 | Msa0440140:intron | 45.0% |
| AGCATAAGCTAACCTCTAGG+CGG | + | chr3_3:6700476-6700495 | None:intergenic | 45.0% | |
| AAGCAGACTGAACATGATCG+TGG | - | chr3_3:6700979-6700998 | Msa0440140:CDS | 45.0% | |
| TGTCAAACCAGCCTCTATGA+AGG | + | chr3_3:6701036-6701055 | None:intergenic | 45.0% | |
| ACATTGTTGCTCTGTGTCAC+TGG | - | chr3_3:6701096-6701115 | Msa0440140:CDS | 45.0% | |
| TACATGTTATGACCCCCACA+GGG | + | chr3_3:6701227-6701246 | None:intergenic | 45.0% | |
| !!! | GAATTTTTGGTCGCGGAGAC+GGG | + | chr3_3:6697379-6697398 | None:intergenic | 50.0% |
| ATCACGTCGTGAACTCGGAT+TGG | + | chr3_3:6697444-6697463 | None:intergenic | 50.0% | |
| GGTGATCGAAGCTGAACTTG+AGG | - | chr3_3:6697494-6697513 | Msa0440140:three_prime_UTR | 50.0% | |
| CATCCGAGATTGTGCTTGCT+AGG | - | chr3_3:6697556-6697575 | Msa0440140:three_prime_UTR | 50.0% | |
| CTTGCTAGGCTTCAGAGTCT+CGG | - | chr3_3:6697570-6697589 | Msa0440140:three_prime_UTR | 50.0% | |
| TTGCTAGGCTTCAGAGTCTC+GGG | - | chr3_3:6697571-6697590 | Msa0440140:three_prime_UTR | 50.0% | |
| !! | GATTAGTCTTGAGCCTGGAC+CGG | - | chr3_3:6697611-6697630 | Msa0440140:CDS | 50.0% |
| GAGGCTGCTAGTAGAGTTTC+TGG | - | chr3_3:6697675-6697694 | Msa0440140:intron | 50.0% | |
| !! | CAACTAAGTGGCGTTGGCTA+CGG | + | chr3_3:6697923-6697942 | None:intergenic | 50.0% |
| GCTAAGTGGGGTGAACTACA+TGG | + | chr3_3:6698043-6698062 | None:intergenic | 50.0% | |
| TGTAGTTCACCCCACTTAGC+AGG | - | chr3_3:6698043-6698062 | Msa0440140:intron | 50.0% | |
| TGGATAGCAGAGACTAGGGT+TGG | - | chr3_3:6698086-6698105 | Msa0440140:intron | 50.0% | |
| !! | CTTGGGTTGGTTAGCAGACT+AGG | - | chr3_3:6698124-6698143 | Msa0440140:intron | 50.0% |
| GTTGGTTAGCAGACTAGGGT+TGG | - | chr3_3:6698129-6698148 | Msa0440140:intron | 50.0% | |
| GAACCCATTCTTCCTCACCT+TGG | - | chr3_3:6698305-6698324 | Msa0440140:CDS | 50.0% | |
| ACCCATTCTTCCTCACCTTG+GGG | - | chr3_3:6698307-6698326 | Msa0440140:CDS | 50.0% | |
| ACCCCAAGGTGAGGAAGAAT+GGG | + | chr3_3:6698311-6698330 | None:intergenic | 50.0% | |
| AACCCCAAGGTGAGGAAGAA+TGG | + | chr3_3:6698312-6698331 | None:intergenic | 50.0% | |
| ATTCTTCCTCACCTTGGGGT+TGG | - | chr3_3:6698311-6698330 | Msa0440140:CDS | 50.0% | |
| TTCTTCCTCACCTTGGGGTT+GGG | - | chr3_3:6698312-6698331 | Msa0440140:CDS | 50.0% | |
| CTACACTCACCTCTGTTGCT+TGG | + | chr3_3:6698777-6698796 | None:intergenic | 50.0% | |
| CAAGCAACAGAGGTGAGTGT+AGG | - | chr3_3:6698775-6698794 | Msa0440140:intron | 50.0% | |
| ATGGACAGCCGTGCAATAAC+CGG | + | chr3_3:6698835-6698854 | None:intergenic | 50.0% | |
| CTGCCAATCTTGGGAAAGCA+TGG | + | chr3_3:6698854-6698873 | None:intergenic | 50.0% | |
| CATGCTTTCCCAAGATTGGC+AGG | - | chr3_3:6698852-6698871 | Msa0440140:intron | 50.0% | |
| ! | GACCTGGATGCCATTTGCAA+TGG | + | chr3_3:6698982-6699001 | None:intergenic | 50.0% |
| TGGCATCCAGGTCTGTAAGA+AGG | - | chr3_3:6698989-6699008 | Msa0440140:intron | 50.0% | |
| AAGCTGCCTTCTTACAGACC+TGG | + | chr3_3:6698998-6699017 | None:intergenic | 50.0% | |
| AGGTCTGTAAGAAGGCAGCT+TGG | - | chr3_3:6698997-6699016 | Msa0440140:intron | 50.0% | |
| GGTCTGTAAGAAGGCAGCTT+GGG | - | chr3_3:6698998-6699017 | Msa0440140:intron | 50.0% | |
| GTTTCTACCACTCACCTTGG+TGG | - | chr3_3:6699105-6699124 | Msa0440140:intron | 50.0% | |
| TATCTGGTGTAAGGCCACCA+AGG | + | chr3_3:6699122-6699141 | None:intergenic | 50.0% | |
| CCTTCTACTTCTTTAGCGGG+GGG | - | chr3_3:6699695-6699714 | Msa0440140:CDS | 50.0% | |
| ! | CTCGGTATGCTGTCCCTTTT+GGG | - | chr3_3:6699980-6699999 | Msa0440140:intron | 50.0% |
| CTGAACCTAGGGATTTCTGC+TGG | - | chr3_3:6700018-6700037 | Msa0440140:intron | 50.0% | |
| TAGCACCAGCAGAAATCCCT+AGG | + | chr3_3:6700026-6700045 | None:intergenic | 50.0% | |
| AACCTTTCAGGAAGGGGAGA+TGG | + | chr3_3:6700081-6700100 | None:intergenic | 50.0% | |
| TCTCCAGTTTGTACCCTAGG+AGG | - | chr3_3:6700120-6700139 | Msa0440140:intron | 50.0% | |
| GGAGGACCAATGACATTGTG+GGG | - | chr3_3:6700138-6700157 | Msa0440140:intron | 50.0% | |
| CTTTGTCTTCGTGGTTCAGC+AGG | + | chr3_3:6700186-6700205 | None:intergenic | 50.0% | |
| !! | GGTCATGTTTTTGCTGGTGC+TGG | - | chr3_3:6700339-6700358 | Msa0440140:intron | 50.0% |
| ATAAGCACTTCTCTCCTCGG+AGG | - | chr3_3:6700391-6700410 | Msa0440140:intron | 50.0% | |
| ! | AAGGATTCTAGGAACCTCCG+AGG | + | chr3_3:6700408-6700427 | None:intergenic | 50.0% |
| ACATCCCACTGATGTTCGGA+AGG | + | chr3_3:6700427-6700446 | None:intergenic | 50.0% | |
| TTCCGAACATCAGTGGGATG+TGG | - | chr3_3:6700426-6700445 | Msa0440140:intron | 50.0% | |
| GTGAATGCCAAATTAGGGGG+AGG | + | chr3_3:6700874-6700893 | None:intergenic | 50.0% | |
| GCTTCTCAGCTCCTTCATAG+AGG | - | chr3_3:6701022-6701041 | Msa0440140:CDS | 50.0% | |
| ! | TGTTGCTCTGTGTCACTGGA+TGG | - | chr3_3:6701100-6701119 | Msa0440140:CDS | 50.0% |
| CTACATGTTATGACCCCCAC+AGG | + | chr3_3:6701228-6701247 | None:intergenic | 50.0% | |
| TGTAGCCGATGCTCATTGCA+TGG | - | chr3_3:6701243-6701262 | Msa0440140:CDS | 50.0% | |
| CTCAGCCATGCAATGAGCAT+CGG | + | chr3_3:6701251-6701270 | None:intergenic | 50.0% | |
| AGACGGGAAAGTGGGGATTG+TGG | + | chr3_3:6697363-6697382 | None:intergenic | 55.0% | |
| !! | CGATGAAAGGCGTCGGGATA+GGG | + | chr3_3:6697412-6697431 | None:intergenic | 55.0% |
| CCTATCCCGACGCCTTTCAT+CGG | - | chr3_3:6697410-6697429 | Msa0440140:three_prime_UTR | 55.0% | |
| !! | TAGCTCCGATGAAAGGCGTC+GGG | + | chr3_3:6697418-6697437 | None:intergenic | 55.0% |
| ! | CTAGCTCCGATGAAAGGCGT+CGG | + | chr3_3:6697419-6697438 | None:intergenic | 55.0% |
| TGCTAGGCTTCAGAGTCTCG+GGG | - | chr3_3:6697572-6697591 | Msa0440140:three_prime_UTR | 55.0% | |
| ! | GCAGTATTGGGCAACTCGAC+CGG | + | chr3_3:6697633-6697652 | None:intergenic | 55.0% |
| CGGTGCAAACCAAGCAACAG+AGG | - | chr3_3:6698765-6698784 | Msa0440140:intron | 55.0% | |
| GTAAGAAGGCAGCTTGGGCA+CGG | - | chr3_3:6699003-6699022 | Msa0440140:intron | 55.0% | |
| TGTAAGGCCACCAAGGTGAG+TGG | + | chr3_3:6699115-6699134 | None:intergenic | 55.0% | |
| AAGCTTGCGGTTTCTGCGTC+AGG | - | chr3_3:6699146-6699165 | Msa0440140:intron | 55.0% | |
| ATGGGCAGACTCCATCTCCT+TGG | - | chr3_3:6699391-6699410 | Msa0440140:intron | 55.0% | |
| TGCTATTGGAGCAGACGACC+AGG | + | chr3_3:6699436-6699455 | None:intergenic | 55.0% | |
| CCCCCCGCTAAAGAAGTAGA+AGG | + | chr3_3:6699698-6699717 | None:intergenic | 55.0% | |
| TAGCGGGGGGTTGTATCTCT+TGG | - | chr3_3:6699708-6699727 | Msa0440140:CDS | 55.0% | |
| AGCGGGGGGTTGTATCTCTT+GGG | - | chr3_3:6699709-6699728 | Msa0440140:CDS | 55.0% | |
| ! | GCTCGGTATGCTGTCCCTTT+TGG | - | chr3_3:6699979-6699998 | Msa0440140:intron | 55.0% |
| AGCCATCTCCCCTTCCTGAA+AGG | - | chr3_3:6700076-6700095 | Msa0440140:intron | 55.0% | |
| GGTCCTCCTAGGGTACAAAC+TGG | + | chr3_3:6700126-6700145 | None:intergenic | 55.0% | |
| GCCTTCTCCTCCCCCTAATT+TGG | - | chr3_3:6700864-6700883 | Msa0440140:intron | 55.0% | |
| GCCAAATTAGGGGGAGGAGA+AGG | + | chr3_3:6700868-6700887 | None:intergenic | 55.0% | |
| CTCAGCTCCTTCATAGAGGC+TGG | - | chr3_3:6701026-6701045 | Msa0440140:CDS | 55.0% | |
| CGATGCTCATTGCATGGCTG+AGG | - | chr3_3:6701249-6701268 | Msa0440140:CDS | 55.0% | |
| !! | CCGATGAAAGGCGTCGGGAT+AGG | + | chr3_3:6697413-6697432 | None:intergenic | 60.0% |
| TTCCTCACCTTGGGGTTGGG+AGG | - | chr3_3:6698315-6698334 | Msa0440140:CDS | 60.0% | |
| TCCTCACCTTGGGGTTGGGA+GGG | - | chr3_3:6698316-6698335 | Msa0440140:CDS | 60.0% | |
| TTGGCAGTGGCACCAGCACA+TGG | - | chr3_3:6699658-6699677 | Msa0440140:CDS | 60.0% | |
| TAGGAAGGTGGGGGTAGCTG+AGG | - | chr3_3:6700562-6700581 | Msa0440140:intron | 60.0% | |
| AGGAAGGTGGGGGTAGCTGA+GGG | - | chr3_3:6700563-6700582 | Msa0440140:intron | 60.0% | |
| GTCGCGGAGACGGGAAAGTG+GGG | + | chr3_3:6697370-6697389 | None:intergenic | 65.0% | |
| GGTCGCGGAGACGGGAAAGT+GGG | + | chr3_3:6697371-6697390 | None:intergenic | 65.0% | |
| TGGTCGCGGAGACGGGAAAG+TGG | + | chr3_3:6697372-6697391 | None:intergenic | 65.0% | |
| TTGGGCAACTCGACCGGTCC+AGG | + | chr3_3:6697627-6697646 | None:intergenic | 65.0% | |
| CCTCACCTTGGGGTTGGGAG+GGG | - | chr3_3:6698317-6698336 | Msa0440140:CDS | 65.0% | |
| CTCACCTTGGGGTTGGGAGG+GGG | - | chr3_3:6698318-6698337 | Msa0440140:CDS | 65.0% | |
| TCACCTTGGGGTTGGGAGGG+GGG | - | chr3_3:6698319-6698338 | Msa0440140:CDS | 65.0% | |
| TAACCCCCCTCCCAACCCCA+AGG | + | chr3_3:6698325-6698344 | None:intergenic | 65.0% | |
| CAGTGGCACCAGCACATGGC+TGG | - | chr3_3:6699662-6699681 | Msa0440140:CDS | 65.0% | |
| GCAAGCAGCCAGCCATGTGC+TGG | + | chr3_3:6699673-6699692 | None:intergenic | 65.0% | |
| CCCCTCCCAACCCCAAGGTG+AGG | + | chr3_3:6698320-6698339 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 6697191 | 6701453 | 6697191 | ID=Msa0440140;Name=Msa0440140 |
| chr3_3 | mRNA | 6697191 | 6701453 | 6697191 | ID=Msa0440140-mRNA-1;Parent=Msa0440140;Name=Msa0440140-mRNA-1;_AED=0.01;_eAED=0.01;_QI=73|1|1|1|1|1|4|412|514 |
| chr3_3 | exon | 6697191 | 6697686 | 6697191 | ID=Msa0440140-mRNA-1:exon:1454;Parent=Msa0440140-mRNA-1 |
| chr3_3 | exon | 6698162 | 6698674 | 6698162 | ID=Msa0440140-mRNA-1:exon:1453;Parent=Msa0440140-mRNA-1 |
| chr3_3 | exon | 6699477 | 6699962 | 6699477 | ID=Msa0440140-mRNA-1:exon:1452;Parent=Msa0440140-mRNA-1 |
| chr3_3 | exon | 6700919 | 6701453 | 6700919 | ID=Msa0440140-mRNA-1:exon:1451;Parent=Msa0440140-mRNA-1 |
| chr3_3 | five_prime_UTR | 6701381 | 6701453 | 6701381 | ID=Msa0440140-mRNA-1:five_prime_utr;Parent=Msa0440140-mRNA-1 |
| chr3_3 | CDS | 6700919 | 6701380 | 6700919 | ID=Msa0440140-mRNA-1:cds;Parent=Msa0440140-mRNA-1 |
| chr3_3 | CDS | 6699477 | 6699962 | 6699477 | ID=Msa0440140-mRNA-1:cds;Parent=Msa0440140-mRNA-1 |
| chr3_3 | CDS | 6698162 | 6698674 | 6698162 | ID=Msa0440140-mRNA-1:cds;Parent=Msa0440140-mRNA-1 |
| chr3_3 | CDS | 6697603 | 6697686 | 6697603 | ID=Msa0440140-mRNA-1:cds;Parent=Msa0440140-mRNA-1 |
| chr3_3 | three_prime_UTR | 6697191 | 6697602 | 6697191 | ID=Msa0440140-mRNA-1:three_prime_utr;Parent=Msa0440140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
