AlfalfaGEDB | Msa0442910

M. sativa cultivar zhongmu-4 / Msa0442910

KEGG: -
GO: -
PFAM: PF01657.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0442910	XP_004499784.2	67.035	634	131	7	5	565	34	662	0.0	813

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0442910	sp\|Q9T0J1\|CRK26_ARATH	36.309	661	307	17	2	565	22	665	5.12e-113	353

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0442910	A0A1S2Y5S5	67.035	634	131	7	5	565	34	662	0.0	813

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0348480	Msa0442910	0.816149	6.418848e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0442910	MtrunA17_Chr3g0081031	65.931	634	140	6	5	565	41	671	0.0	797
Msa0442910	MtrunA17_Chr3g0081001	45.959	631	262	8	11	565	35	662	4.18e-176	513
Msa0442910	MtrunA17_Chr3g0081011	44.197	629	272	7	11	565	35	658	2.79e-166	488
Msa0442910	MtrunA17_Chr8g0354421	43.103	638	278	13	7	565	51	682	1.11e-164	484
Msa0442910	MtrunA17_Chr8g0354351	42.880	632	279	10	7	565	30	652	1.60e-161	475
Msa0442910	MtrunA17_Chr8g0354441	42.879	639	274	14	11	565	38	669	1.45e-160	473
Msa0442910	MtrunA17_Chr8g0354271	44.497	636	253	15	13	565	37	655	2.52e-156	462
Msa0442910	MtrunA17_Chr8g0354281	41.838	631	280	11	11	565	34	653	8.32e-153	453
Msa0442910	MtrunA17_Chr8g0354431	39.465	636	305	8	7	565	29	661	1.87e-147	439
Msa0442910	MtrunA17_Chr3g0082941	47.122	469	177	6	151	565	32	483	7.90e-135	401

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0442910	AT4G38830.1	36.309	661	307	17	2	565	22	665	5.20e-114	353
Msa0442910	AT4G05200.1	33.032	663	333	15	2	565	25	675	1.07e-112	350
Msa0442910	AT4G05200.2	33.032	663	333	15	2	565	43	693	1.40e-112	351
Msa0442910	AT4G23180.1	34.675	646	315	14	9	565	42	669	3.91e-111	346
Msa0442910	AT4G21410.3	35.518	656	322	11	5	565	30	679	8.12e-111	346
Msa0442910	AT4G23240.1	35.110	638	305	14	19	562	37	659	1.37e-110	345
Msa0442910	AT4G23220.1	34.509	652	312	14	11	565	25	658	1.44e-108	339
Msa0442910	AT4G23160.1	33.587	658	323	13	4	565	43	682	3.86e-108	339
Msa0442910	AT4G23230.1	34.975	609	285	14	15	533	38	625	1.84e-107	335
Msa0442910	AT4G23280.1	34.916	653	322	14	4	565	26	666	2.87e-107	336

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Find 114 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGCTGAGGCATTATT+AGG	0.166109	3_3:+13248708	None:intergenic
AAAGATTAAGCATTATTAAT+GGG	0.340325	3_3:-13246528	Msa0442910:CDS
AAAGCGCCAGCGCCTCAGAT+AGG	0.498163	3_3:-13248285	Msa0442910:intron
AAATAGCTGAGGCATTATTA+GGG	0.409334	3_3:+13248709	None:intergenic
AAATGATGGACATATGGGGC+TGG	0.493742	3_3:+13245652	None:intergenic
AACACATGAGTGGCAAAGGG+TGG	0.649704	3_3:+13248764	None:intergenic
AACAGAAAATGATGGACATA+TGG	0.398179	3_3:+13245646	None:intergenic
AACAGTAGCAGTAGCGCTAT+TGG	0.453774	3_3:-13247973	Msa0442910:CDS
AACATCGTTTCAAGGTGTTG+AGG	0.558138	3_3:-13247509	Msa0442910:CDS
AACATTTGGAGGGGACCAGG+GGG	0.659333	3_3:-13246377	Msa0442910:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGAATATTGAACACATGAG+TGG	+	chr3_3:13245706-13245725	None:intergenic	30.0%
GCATATCTGCTTTATCAATT+TGG	+	chr3_3:13245729-13245748	None:intergenic	30.0%
GAGTATCTCAAAAGACAAAA+GGG	+	chr3_3:13245782-13245801	None:intergenic	30.0%
TGAGTATCTCAAAAGACAAA+AGG	+	chr3_3:13245783-13245802	None:intergenic	30.0%
GATGAATGGTTTGATACAAA+TGG	-	chr3_3:13245910-13245929	Msa0442910:intron	30.0%
TCACAAACACCATTAATGTT+TGG	-	chr3_3:13245935-13245954	Msa0442910:intron	30.0%
ACATAAATGGTACTCAAAGA+AGG	-	chr3_3:13245972-13245991	Msa0442910:intron	30.0%
GGATATTGAAAATTGTTGTG+AGG	-	chr3_3:13246066-13246085	Msa0442910:intron	30.0%
TTGAGTAAAATCGAAACACT+TGG	+	chr3_3:13246361-13246380	None:intergenic	30.0%
TGCATTAACAAAACATGACA+AGG	+	chr3_3:13246405-13246424	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	13245488	13248991	13245488	ID=Msa0442910;Name=Msa0442910
chr3_3	mRNA	13245488	13248991	13245488	ID=Msa0442910-mRNA-1;Parent=Msa0442910;Name=Msa0442910-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0\|0.57\|0.5\|1\|0.57\|0.5\|8\|59\|565
chr3_3	exon	13245488	13245861	13245488	ID=Msa0442910-mRNA-1:exon:2933;Parent=Msa0442910-mRNA-1
chr3_3	exon	13246357	13246583	13246357	ID=Msa0442910-mRNA-1:exon:2932;Parent=Msa0442910-mRNA-1
chr3_3	exon	13247368	13247578	13247368	ID=Msa0442910-mRNA-1:exon:2931;Parent=Msa0442910-mRNA-1
chr3_3	exon	13247676	13247848	13247676	ID=Msa0442910-mRNA-1:exon:2930;Parent=Msa0442910-mRNA-1
chr3_3	exon	13247931	13248053	13247931	ID=Msa0442910-mRNA-1:exon:2929;Parent=Msa0442910-mRNA-1
chr3_3	exon	13248286	13248485	13248286	ID=Msa0442910-mRNA-1:exon:2928;Parent=Msa0442910-mRNA-1
chr3_3	exon	13248513	13248736	13248513	ID=Msa0442910-mRNA-1:exon:2927;Parent=Msa0442910-mRNA-1
chr3_3	exon	13248767	13248991	13248767	ID=Msa0442910-mRNA-1:exon:2926;Parent=Msa0442910-mRNA-1
chr3_3	CDS	13248767	13248991	13248767	ID=Msa0442910-mRNA-1:cds;Parent=Msa0442910-mRNA-1
chr3_3	CDS	13248513	13248736	13248513	ID=Msa0442910-mRNA-1:cds;Parent=Msa0442910-mRNA-1
chr3_3	CDS	13248286	13248485	13248286	ID=Msa0442910-mRNA-1:cds;Parent=Msa0442910-mRNA-1
chr3_3	CDS	13247931	13248053	13247931	ID=Msa0442910-mRNA-1:cds;Parent=Msa0442910-mRNA-1
chr3_3	CDS	13247676	13247848	13247676	ID=Msa0442910-mRNA-1:cds;Parent=Msa0442910-mRNA-1
chr3_3	CDS	13247368	13247578	13247368	ID=Msa0442910-mRNA-1:cds;Parent=Msa0442910-mRNA-1
chr3_3	CDS	13246357	13246583	13246357	ID=Msa0442910-mRNA-1:cds;Parent=Msa0442910-mRNA-1
chr3_3	CDS	13245547	13245861	13245547	ID=Msa0442910-mRNA-1:cds;Parent=Msa0442910-mRNA-1
chr3_3	three_prime_UTR	13245488	13245546	13245488	ID=Msa0442910-mRNA-1:three_prime_utr;Parent=Msa0442910-mRNA-1

Gene Sequence

>Msa0442910

TATACACAACCACTTGATTATAGATATGCCTGTTTAGACCAATCATATAATACTCCCTCTAACATATACCAAACCAACCTCAACAATTTGCTCAGATCACTATCATCAGATTCTGCTATCAGCAATGGTTTTGGACACACAACTTCAGGAAATGATAAAAACAATATGATTTATGGACTATATTTTTGTCGCGGCGATGCAAACGCCACCCTTTGCCACTCATGTATATGCCCTAATAATGCCTCAGCTATTTTTTGGTGTCCCTTTTGTCTTTTGAGATACTCAAATGAAAATTTCGTTGGCAAACTAGCTATAAGACCAAGGATTCCTATGTTTGATGCAACACAGAATTTTACAAGTGCTGGTGAGTTTGATAGTGATGCTAGGATTCTGATGAATGGTTTGATACAAATGGGATCACAAACACCATTAATGTTTGGAACACATATGTATGGTTGGGTGCAATGCAGCAGAGATATTACTAGTGAGGAATGCAGAACTTGTTTGAGCAATATGCTTGAGGATATTGAAAATTGTTGTGAGGAGAAGAAAGTGTGGCGTATATTTTCGCCTAGTTGTGTTGTCATGTATGAAACTCAACCGTTCCTTTTGACGAGTATACAGACCAAAGCGCCAGCGCCTCAGATAGCCAAACAAAAGGAAGAAACAAGGTCCTTGATTCTAAAAATAATCATTATTGTAACCGCAACAGTAGCAGTAGCGCTATTGGCTTTCAGCACATACTACTACAGGCGCTTGGAACGGAAAAAAAATGAAAAAGAGATGCAAAGCCTTCATGCAATTTTTTCTCAAGAGCAGACTAACAATGAGGAGAACGTGAATGCTGACCTACCTATGATGCCTCTGAGTGCTATTCTAAAAAGTACTAATAACTTTTCTGATAAATATAAATTGGGGGAAGGTGGATTCGGAACTGTCTACAAGGGTGTTTCAGCAGATGGAAGGGAAATTGCTGTTAAAAGGCTTTCAAAAACATCGTTTCAAGGTGTTGAGGAATTCAAGAATGAAGTAATGTTGATTGCAAAATTGCAACATCGGAACCTTGTGAGACTGTTGGCTTGCTGCATTGAGCAAACTGAGAAGCTTCTTATCTATGAATACATGCCCAATTCAAGCCTTGATTTCCATCTACGCGATATTGTGAAGGGTGCACAATTGGACTGGAAACAAAGATTAAGCATTATTAATGGGATTGCGAAAGGGCTTCTGTATCTTCATGAGGACTCCAGACTTAGGGTTATTCACAGAGACTTGAAAGCTAGCAATATACTGTTAGATCATGAAATGAATCCAAAAATCTCAGACTTTGGACTAGCAAGAACATTTGGAGGGGACCAGGGGGAAGCAAATACAATGAGAGTTGCATGGAACTTCTGGAGTGCAGACAAAGGTTTAGAATTGATGGATCCGTTGATAGCAAATTCATATGTGCCTAGTGAAGTTTTGAAGTGTATACACATTGGCCTATTGTGTGTACAAGATAATGCAGCTGATAGGCCTACAATGTCAGGTGTTGTTCACATGCTTGGAAGTGACAATGTTACACTTCCCAGCCCCATATGTCCATCATTTTCTGTTGGAAGGGCTACAAATACAATTGAAGGAGGGTGTTCATCAAATGCTTCTACCTCTGTCACTGTCAATGAAATAACCCTATCCGAAGTGTTGCCTAGATGA

Protein sequence

>Msa0442910

YTQPLDYRYACLDQSYNTPSNIYQTNLNNLLRSLSSDSAISNGFGHTTSGNDKNNMIYGLYFCRGDANATLCHSCICPNNASAIFWCPFCLLRYSNENFVGKLAIRPRIPMFDATQNFTSAGEFDSDARILMNGLIQMGSQTPLMFGTHMYGWVQCSRDITSEECRTCLSNMLEDIENCCEEKKVWRIFSPSCVVMYETQPFLLTSIQTKAPAPQIAKQKEETRSLILKIIIIVTATVAVALLAFSTYYYRRLERKKNEKEMQSLHAIFSQEQTNNEENVNADLPMMPLSAILKSTNNFSDKYKLGEGGFGTVYKGVSADGREIAVKRLSKTSFQGVEEFKNEVMLIAKLQHRNLVRLLACCIEQTEKLLIYEYMPNSSLDFHLRDIVKGAQLDWKQRLSIINGIAKGLLYLHEDSRLRVIHRDLKASNILLDHEMNPKISDFGLARTFGGDQGEANTMRVAWNFWSADKGLELMDPLIANSYVPSEVLKCIHIGLLCVQDNAADRPTMSGVVHMLGSDNVTLPSPICPSFSVGRATNTIEGGCSSNASTSVTVNEITLSEVLPR*