AlfalfaGEDB | Msa0443220

M. sativa cultivar zhongmu-4 / Msa0443220

KEGG: K02945|K14156
GO: -
PFAM: PF01633.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0443220	XP_003598417.1	97.800	500	11	0	1	500	1	500	0.0	1014

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0443220	sp\|Q8L518\|CK2_ARATH	68.529	340	107	0	115	454	7	346	3.18e-179	509

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0443220	G7IVT5	97.800	500	11	0	1	500	1	500	0.0	1014

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0307470	Msa0443220	0.819230	1.295269e-52	-8.615850e-47
Msa0443220	Msa0704730	0.814972	1.173124e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0443220	MtrunA17_Chr3g0081621	97.800	500	11	0	1	500	1	500	0.0	1014
Msa0443220	MtrunA17_Chr8g0354091	72.981	359	87	2	113	468	19	370	0.0	541
Msa0443220	MtrunA17_Chr1g0201341	64.463	363	127	2	113	473	2	364	3.18e-176	499
Msa0443220	MtrunA17_Chr6g0466631	66.667	327	108	1	128	453	17	343	1.12e-168	479
Msa0443220	MtrunA17_Chr2g0307011	35.312	320	192	5	140	453	56	366	3.80e-55	189

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0443220	AT1G74320.1	68.529	340	107	0	115	454	7	346	3.24e-180	509
Msa0443220	AT4G09760.1	63.030	330	119	3	126	453	14	342	6.24e-158	452
Msa0443220	AT4G09760.2	63.030	330	119	3	126	453	14	342	6.24e-158	452
Msa0443220	AT1G71697.1	62.310	329	122	2	126	452	16	344	2.96e-156	448
Msa0443220	AT4G09760.3	58.294	211	85	3	126	334	14	223	5.23e-85	263
Msa0443220	AT4G09760.4	56.633	196	82	3	126	319	14	208	3.95e-75	236
Msa0443220	AT2G26830.1	36.254	331	192	6	131	453	45	364	1.04e-59	201

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Find 127 sgRNAs with CRISPR-Local

Find 398 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGGCCAGCTACAACTG+AGG	0.589696	3_3:+13858934	Msa0443220:CDS
AACAGAGGTTTCAAGAGTAT+TGG	0.403796	3_3:+13862437	Msa0443220:CDS
AACCCCGTAAATGACACTTT+AGG	0.528458	3_3:+13858596	Msa0443220:CDS
AACTGAGGAAACCTCACGAA+AGG	0.614934	3_3:+13858949	Msa0443220:CDS
AAGGTTCTTGTTAGGATCTA+CGG	0.422916	3_3:+13858968	Msa0443220:CDS
AATCAAATACCTGTACCCTC+AGG	0.510529	3_3:-13862511	None:intergenic
AATCCTATAAGCAATCAAGC+AGG	0.622217	3_3:+13858521	Msa0443220:CDS
AATCTCTCTCTCGACTTCAC+CGG	0.601935	3_3:+13856833	Msa0443220:five_prime_UTR
AATGATACAGCAGGTGATGA+TGG	0.495476	3_3:+13858671	Msa0443220:CDS
AATTCTACAAATGATACAGC+AGG	0.584713	3_3:+13858662	Msa0443220:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAATTGTAACGATGATTGAA+TGG	+	chr3_3:13857077-13857096	Msa0443220:intron	30.0%
AATATAAAGATACACGACAC+CGG	+	chr3_3:13857191-13857210	Msa0443220:intron	30.0%
ATTTCAATCGTTGATATCAC+CGG	+	chr3_3:13857425-13857444	Msa0443220:intron	30.0%
GAGTCTTCAAATTCAATCAT+TGG	+	chr3_3:13857603-13857622	Msa0443220:intron	30.0%
GTTTGACAAAAAAATGACCT+AGG	+	chr3_3:13857723-13857742	Msa0443220:intron	30.0%
GAAGAACAATAGAAAATCCT+AGG	-	chr3_3:13857743-13857762	None:intergenic	30.0%
ATGAAAGGTCTTTGACTAAT+AGG	+	chr3_3:13857910-13857929	Msa0443220:intron	30.0%
ATTATTGAACTTGAAAGAGG+GGG	+	chr3_3:13858036-13858055	Msa0443220:intron	30.0%
GTACTGAAGTTACAGATAAA+GGG	+	chr3_3:13858367-13858386	Msa0443220:five_prime_UTR	30.0%
AATTCTACAAATGATACAGC+AGG	+	chr3_3:13858662-13858681	Msa0443220:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	13856796	13862811	13856796	ID=Msa0443220;Name=Msa0443220
chr3_3	mRNA	13856796	13862811	13856796	ID=Msa0443220-mRNA-1;Parent=Msa0443220;Name=Msa0443220-mRNA-1;_AED=0.04;_eAED=0.04;_QI=192\|1\|1\|1\|0.87\|0.77\|9\|68\|500
chr3_3	exon	13856796	13856914	13856796	ID=Msa0443220-mRNA-1:exon:3009;Parent=Msa0443220-mRNA-1
chr3_3	exon	13858367	13859123	13858367	ID=Msa0443220-mRNA-1:exon:3010;Parent=Msa0443220-mRNA-1
chr3_3	exon	13859390	13859511	13859390	ID=Msa0443220-mRNA-1:exon:3011;Parent=Msa0443220-mRNA-1
chr3_3	exon	13859630	13859825	13859630	ID=Msa0443220-mRNA-1:exon:3012;Parent=Msa0443220-mRNA-1
chr3_3	exon	13860866	13860983	13860866	ID=Msa0443220-mRNA-1:exon:3013;Parent=Msa0443220-mRNA-1
chr3_3	exon	13861069	13861116	13861069	ID=Msa0443220-mRNA-1:exon:3014;Parent=Msa0443220-mRNA-1
chr3_3	exon	13861373	13861473	13861373	ID=Msa0443220-mRNA-1:exon:3015;Parent=Msa0443220-mRNA-1
chr3_3	exon	13862394	13862523	13862394	ID=Msa0443220-mRNA-1:exon:3016;Parent=Msa0443220-mRNA-1
chr3_3	exon	13862640	13862811	13862640	ID=Msa0443220-mRNA-1:exon:3017;Parent=Msa0443220-mRNA-1
chr3_3	five_prime_UTR	13856796	13856914	13856796	ID=Msa0443220-mRNA-1:five_prime_utr;Parent=Msa0443220-mRNA-1
chr3_3	five_prime_UTR	13858367	13858439	13858367	ID=Msa0443220-mRNA-1:five_prime_utr;Parent=Msa0443220-mRNA-1
chr3_3	CDS	13858440	13859123	13858440	ID=Msa0443220-mRNA-1:cds;Parent=Msa0443220-mRNA-1
chr3_3	CDS	13859390	13859511	13859390	ID=Msa0443220-mRNA-1:cds;Parent=Msa0443220-mRNA-1
chr3_3	CDS	13859630	13859825	13859630	ID=Msa0443220-mRNA-1:cds;Parent=Msa0443220-mRNA-1
chr3_3	CDS	13860866	13860983	13860866	ID=Msa0443220-mRNA-1:cds;Parent=Msa0443220-mRNA-1
chr3_3	CDS	13861069	13861116	13861069	ID=Msa0443220-mRNA-1:cds;Parent=Msa0443220-mRNA-1
chr3_3	CDS	13861373	13861473	13861373	ID=Msa0443220-mRNA-1:cds;Parent=Msa0443220-mRNA-1
chr3_3	CDS	13862394	13862523	13862394	ID=Msa0443220-mRNA-1:cds;Parent=Msa0443220-mRNA-1
chr3_3	CDS	13862640	13862743	13862640	ID=Msa0443220-mRNA-1:cds;Parent=Msa0443220-mRNA-1
chr3_3	three_prime_UTR	13862744	13862811	13862744	ID=Msa0443220-mRNA-1:three_prime_utr;Parent=Msa0443220-mRNA-1

Gene Sequence

>Msa0443220

ATGGGTGCAGGAGAAGATCTTGTAAACAATGCAGCTAGTGTTGCTGAGAATCCTGCAAACCAGGCGACTCCTACTACAGAAAATCCTATAAGCAATCAAGCAGGTGGGGCAGAAAATCCTGTAAATGTTGCAAAAGACCAAGCAGTTGGTGCAGAAAACCCCGTAAATGACACTTTAGGTGGTTCAGATGTTTTAGTGAATGATAAAGCACATGCTGCCGAAAATTCTACAAATGATACAGCAGGTGATGATGGAAAAGAAGGTGCTATGAAAGACAAAGCAGGTGAAGATGACAAACAAGGTGCTGCAGAAAATCTCGCAGAAGAGAAACCAGATGCCATTGAAACCCCTGTAAGCAGCAAAGCTGACCGCCTTCCAGCAGAAGCAAAGGAGATTCTGATATCATTAGCAGGTAAATGGGAGGATGTACTAGATGCAAATGCGTTACAGGTGATCCCTCTCAAGGGGGCAATGACAAATGAGGTATTTGAAATAAAGTGGCCAGCTACAACTGAGGAAACCTCACGAAAGGTTCTTGTTAGGATCTACGGGGAGGGTGTGGAAATTTTCTTTGATAGGGATGATGAAATACGGACATTTGAGTACATGTCAAAGAATGGTCAGGGACCTCGTCTACTAGGACGTTTTACAAATGGACGTGTTGAAGAGTTTATACATGCACGGACGCTGTCAGCTTCTGATCTACGTGATCCATCCATTTCTGCTCTTATAGCGGCCAAAATGAAGGAGTTCCATGATCTAGATATGCCTGGTGAAAAGAAAGCCAATCTTTGGCCTACATTGAGAAATTGGCTTAGTGAGGCCAAACGTTTGTCTTCTCCAAAAGAAGTGGAAGCTTTTTATTTGGACACGGTCGACAAGGAAATCTCTATTTTGGAAAAGGAGCTGTCAGGCTCGCATCAACGGATAGGGTTTTGCCACAATGATTTGCAATATGGTAACATAATGCTTGACGAAGAGACCAATTCTGTGACCATAATAGACTATGAATATGCTAGTCACAATCCTGTAGCATATGATATAGCAAACCACTTTTGTGAGATGGCTGCGAACTACCATACAGAAACGCCTCATATTCTTGATTATAGCAAATATCCTGACGTTGAGGAGCGTGAAAGATTTGTTAGGGCATATTTGAAGACCTCAGGTGAAGAACCAAGTGAGAGTGAAGTGGAGCACCTACTACAAGAAGTTGAGAAGTATACACTCGCAAATCATCTTTTCTGGGGCCTTTGGGGAATAATTTCGGGACAAGTAAACACAATTGAATTTGACTACAAGGAGTATGCGAAACAGAGGTTTCAAGAGTATTGGGCAAGGAAACCTTATCTTCTAAGCTCTGATGCACCTTCTCCTTTTAATAACCCTGAGGGTACAGGAGAGCTTGCGTCTGCAGCGCATGCCAAAGGATCGAAGAACTCTGGTATCTTCAGGAAGATGAAGAGAGTTTTGGGTCTTGGCTTGTTCAGGTCGAAAAGCTAA

Protein sequence

>Msa0443220

MGAGEDLVNNAASVAENPANQATPTTENPISNQAGGAENPVNVAKDQAVGAENPVNDTLGGSDVLVNDKAHAAENSTNDTAGDDGKEGAMKDKAGEDDKQGAAENLAEEKPDAIETPVSSKADRLPAEAKEILISLAGKWEDVLDANALQVIPLKGAMTNEVFEIKWPATTEETSRKVLVRIYGEGVEIFFDRDDEIRTFEYMSKNGQGPRLLGRFTNGRVEEFIHARTLSASDLRDPSISALIAAKMKEFHDLDMPGEKKANLWPTLRNWLSEAKRLSSPKEVEAFYLDTVDKEISILEKELSGSHQRIGFCHNDLQYGNIMLDEETNSVTIIDYEYASHNPVAYDIANHFCEMAANYHTETPHILDYSKYPDVEERERFVRAYLKTSGEEPSESEVEHLLQEVEKYTLANHLFWGLWGIISGQVNTIEFDYKEYAKQRFQEYWARKPYLLSSDAPSPFNNPEGTGELASAAHAKGSKNSGIFRKMKRVLGLGLFRSKS*