Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0453710 | KEH25578.1 | 61.475 | 122 | 28 | 2 | 121 | 223 | 1 | 122 | 2.69e-41 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0453710 | sp|Q8LFG1|AMY2_ARATH | 54.000 | 100 | 38 | 3 | 134 | 226 | 197 | 295 | 2.83e-24 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0453710 | A0A072U8Z5 | 61.475 | 122 | 28 | 2 | 121 | 223 | 1 | 122 | 1.29e-41 | 147 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0389340 | Msa0453710 | 0.800075 | 1.708524e-48 | -8.615850e-47 |
| Msa0453710 | Msa0562440 | 0.812719 | 3.680640e-51 | -8.615850e-47 |
| Msa0453710 | Msa0692230 | 0.812051 | 5.148905e-51 | -8.615850e-47 |
| Msa0453710 | Msa0784380 | 0.821028 | 5.019154e-53 | -8.615850e-47 |
| Msa0453710 | Msa1384350 | 0.807463 | 4.993644e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0453710 | MtrunA17_Chr1g0157251 | 65.657 | 99 | 28 | 2 | 134 | 226 | 216 | 314 | 3.08e-35 | 129 |
| Msa0453710 | MtrunA17_Chr1g0210271 | 78.431 | 51 | 10 | 1 | 1 | 50 | 30 | 80 | 2.10e-22 | 88.2 |
| Msa0453710 | MtrunA17_Chr8g0343331 | 80.769 | 52 | 3 | 1 | 172 | 223 | 3 | 47 | 2.49e-21 | 84.0 |
| Msa0453710 | MtrunA17_Chr7g0218861 | 39.604 | 101 | 53 | 2 | 132 | 225 | 739 | 838 | 1.84e-17 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0453710 | AT1G76130.2 | 54.000 | 100 | 38 | 3 | 134 | 226 | 197 | 295 | 2.87e-25 | 102 |
| Msa0453710 | AT1G76130.1 | 54.000 | 100 | 38 | 3 | 134 | 226 | 197 | 295 | 2.87e-25 | 102 |
Find 49 sgRNAs with CRISPR-Local
Find 342 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATACTCTTTCACATATTT+TGG | 0.139940 | 3_3:-44486703 | None:intergenic |
| AATAAATTAATTTCTTAGTT+TGG | 0.235103 | 3_3:+44487508 | Msa0453710:three_prime_UTR |
| GGCCGTAGACAAAATGGTTT+TGG | 0.251844 | 3_3:+44486265 | Msa0453710:CDS |
| TCTTTAGTTTGGATTGTATA+TGG | 0.272472 | 3_3:+44486244 | Msa0453710:intron |
| AATCTGTCAAGATAGAATTT+TGG | 0.285562 | 3_3:+44487380 | Msa0453710:CDS |
| GTATATGGCCGTAGACAAAA+TGG | 0.365802 | 3_3:+44486259 | Msa0453710:CDS |
| GTTATCTGTCGGGGAGTATT+GGG | 0.366022 | 3_3:+44486744 | Msa0453710:CDS |
| CAACTACAACGGTTCTACTT+TGG | 0.381705 | 3_3:+44486774 | Msa0453710:CDS |
| ATTTCAATGATGTTACTTCA+TGG | 0.382772 | 3_3:-44485550 | None:intergenic |
| TGTTATCTGTCGGGGAGTAT+TGG | 0.385636 | 3_3:+44486743 | Msa0453710:CDS |
| AGCCACCTGGTGTGATTGGA+TGG | 0.432434 | 3_3:+44487425 | Msa0453710:CDS |
| GGGAAGCCACCTGGTGTGAT+TGG | 0.442070 | 3_3:+44487421 | Msa0453710:CDS |
| TTTCAATGATGTTACTTCAT+GGG | 0.446858 | 3_3:-44485549 | None:intergenic |
| GAAATATTTGGACGACAAGT+TGG | 0.461422 | 3_3:+44481386 | Msa0453710:CDS |
| TAAAGCCACTGTTATCTGTC+GGG | 0.462046 | 3_3:+44486734 | Msa0453710:CDS |
| ACATACTTAGGACAAAATGC+TGG | 0.471172 | 3_3:-44487182 | None:intergenic |
| TATGTGAAAGAGTATATTGA+AGG | 0.482463 | 3_3:+44486709 | Msa0453710:CDS |
| TGTATACAGGAGCAGATGTA+TGG | 0.482734 | 3_3:+44481456 | Msa0453710:CDS |
| GCAATCTGTCGATGGGAACT+AGG | 0.491903 | 3_3:-44485581 | None:intergenic |
| TGTAGACCTCGAGTGTATAC+AGG | 0.492746 | 3_3:+44481443 | Msa0453710:CDS |
| AGGACAAAATGCTGGGTACC+TGG | 0.493039 | 3_3:-44487174 | None:intergenic |
| TCCAAGGTGACTGATCTTGA+AGG | 0.511211 | 3_3:-44487451 | None:intergenic |
| TGGCGTCTGCGTGATGCTCA+AGG | 0.519632 | 3_3:+44487400 | Msa0453710:CDS |
| ATGGGAAAAGAACATGGTAA+TGG | 0.521231 | 3_3:-44485531 | None:intergenic |
| ATGGAATATACTTGCTGAGT+TGG | 0.523555 | 3_3:+44481475 | Msa0453710:CDS |
| ATCAATTCTTCAAAATTCCA+AGG | 0.530567 | 3_3:-44487467 | None:intergenic |
| GGGTACCTGGAGAATTCCCT+TGG | 0.538881 | 3_3:-44487161 | None:intergenic |
| CACAACCAAGGGAATTCTCC+AGG | 0.551322 | 3_3:+44487156 | Msa0453710:CDS |
| GAAGATCGGCAATCTGTCGA+TGG | 0.554493 | 3_3:-44485589 | None:intergenic |
| GGCGTCTGCGTGATGCTCAA+GGG | 0.556907 | 3_3:+44487401 | Msa0453710:CDS |
| GCATTTGACTTCACAACCAA+GGG | 0.566821 | 3_3:+44487145 | Msa0453710:CDS |
| GATGCTCAAGGGAAGCCACC+TGG | 0.567303 | 3_3:+44487412 | Msa0453710:CDS |
| GTAAAGCCACTGTTATCTGT+CGG | 0.568128 | 3_3:+44486733 | Msa0453710:CDS |
| GCCTTCAAGATCAGTCACCT+TGG | 0.573831 | 3_3:+44487450 | Msa0453710:CDS |
| TGCATTTGACTTCACAACCA+AGG | 0.585189 | 3_3:+44487144 | Msa0453710:CDS |
| TAGCACTTAAAACGAAATTG+TGG | 0.586272 | 3_3:-44481506 | None:intergenic |
| TTCAGAGCGAGTTCGAAGAT+CGG | 0.596069 | 3_3:-44485603 | None:intergenic |
| TCTACTTTGGACTATAACCA+AGG | 0.599790 | 3_3:+44486787 | Msa0453710:CDS |
| AAGATCGGCAATCTGTCGAT+GGG | 0.605945 | 3_3:-44485588 | None:intergenic |
| CATACTTAGGACAAAATGCT+GGG | 0.616712 | 3_3:-44487181 | None:intergenic |
| AAAGCCACTGTTATCTGTCG+GGG | 0.623865 | 3_3:+44486735 | Msa0453710:CDS |
| TACTTCATGGGAAAAGAACA+TGG | 0.632626 | 3_3:-44485537 | None:intergenic |
| TGGGATACTTGCAACTACAA+CGG | 0.639609 | 3_3:+44486763 | Msa0453710:CDS |
| GGCCACCATCCAATCACACC+AGG | 0.642620 | 3_3:-44487430 | None:intergenic |
| CACCTGGTGTGATTGGATGG+TGG | 0.642628 | 3_3:+44487428 | Msa0453710:CDS |
| CTACAAATGACAGAATTGAG+AGG | 0.672780 | 3_3:-44486673 | None:intergenic |
| CACCATCCAATCACACCAGG+TGG | 0.696228 | 3_3:-44487427 | None:intergenic |
| TCTGCTCCTGTATACACTCG+AGG | 0.699341 | 3_3:-44481449 | None:intergenic |
| TACTCCCCGACAGATAACAG+TGG | 0.771341 | 3_3:-44486739 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTATAAAAAAATAAAT+CGG | + | chr3_3:44483603-44483622 | Msa0453710:intron | 0.0% |
| !!! | TTCTTTTATAATTTCTTTAA+CGG | - | chr3_3:44482254-44482273 | None:intergenic | 10.0% |
| !!! | GAATTATTTTTAAAATCATA+AGG | - | chr3_3:44482937-44482956 | None:intergenic | 10.0% |
| !!! | TTTTAACTTGTATATTAATA+CGG | - | chr3_3:44483391-44483410 | None:intergenic | 10.0% |
| !!! | GATGAATTTTATATATTTTA+TGG | + | chr3_3:44484216-44484235 | Msa0453710:intron | 10.0% |
| !!! | ATATTTTCTTCAAAAAAAAA+AGG | + | chr3_3:44484767-44484786 | Msa0453710:intron | 10.0% |
| !!! | AATATTTTCTTCAAAAAAAA+AGG | + | chr3_3:44484766-44484785 | Msa0453710:intron | 10.0% |
| !!! | ATAATCATCATTTTTTTAAT+AGG | - | chr3_3:44486469-44486488 | None:intergenic | 10.0% |
| !! | AATAAATTAATTTCTTAGTT+TGG | + | chr3_3:44487508-44487527 | Msa0453710:three_prime_UTR | 10.0% |
| !! | TTTGCAATAATATAAAAAGA+AGG | + | chr3_3:44481537-44481556 | Msa0453710:intron | 15.0% |
| !!! | ATTTTAAAAATAATTCACGT+TGG | + | chr3_3:44482941-44482960 | Msa0453710:intron | 15.0% |
| !! | TAAATGTTGAAAATATAGTA+GGG | - | chr3_3:44483828-44483847 | None:intergenic | 15.0% |
| !! | ATAAATGTTGAAAATATAGT+AGG | - | chr3_3:44483829-44483848 | None:intergenic | 15.0% |
| !! | ACAATTGTAAAATTTATAGA+TGG | + | chr3_3:44484414-44484433 | Msa0453710:intron | 15.0% |
| !!! | ATTTCAGTTTTTTTTTTGTT+TGG | - | chr3_3:44484576-44484595 | None:intergenic | 15.0% |
| !! | AACTGAAATAATAATAATTG+TGG | + | chr3_3:44484587-44484606 | Msa0453710:intron | 15.0% |
| !! | CGTAACAAAATTAATAAATA+AGG | + | chr3_3:44484911-44484930 | Msa0453710:intron | 15.0% |
| !!! | AGAATTTTACACTTTTTTTT+TGG | - | chr3_3:44484974-44484993 | None:intergenic | 15.0% |
| !! | AAAAGCCTATTAATTTAATT+AGG | - | chr3_3:44485287-44485306 | None:intergenic | 15.0% |
| !!! | ATTTAACTTTGTTATTTCTA+AGG | + | chr3_3:44485505-44485524 | Msa0453710:intron | 15.0% |
| !!! | TTTAACTTTGTTATTTCTAA+GGG | + | chr3_3:44485506-44485525 | Msa0453710:intron | 15.0% |
| !!! | TCAAATAAATGAATACTTTT+TGG | + | chr3_3:44486831-44486850 | Msa0453710:intron | 15.0% |
| !!! | AAAAAGAAGGAGTTAATTTT+TGG | + | chr3_3:44481550-44481569 | Msa0453710:intron | 20.0% |
| !! | AAGATACTAAATAACATCAA+TGG | - | chr3_3:44481660-44481679 | None:intergenic | 20.0% |
| !! | GATATTTAACTATGTCTATA+AGG | - | chr3_3:44481834-44481853 | None:intergenic | 20.0% |
| !! | TCTTAAGATATAGATTGTAA+AGG | + | chr3_3:44482041-44482060 | Msa0453710:intron | 20.0% |
| !! | ATGCCTAAATCAAATTAAAA+GGG | - | chr3_3:44482142-44482161 | None:intergenic | 20.0% |
| !! | TATGCCTAAATCAAATTAAA+AGG | - | chr3_3:44482143-44482162 | None:intergenic | 20.0% |
| !!! | AAACGATTTTGATTTCAATA+TGG | + | chr3_3:44482218-44482237 | Msa0453710:intron | 20.0% |
| !!! | AACGATTTTGATTTCAATAT+GGG | + | chr3_3:44482219-44482238 | Msa0453710:intron | 20.0% |
| !!! | TTTTTAATATTAAAAGAGCG+TGG | + | chr3_3:44482602-44482621 | Msa0453710:intron | 20.0% |
| !! | AAATTTGAGGAAAAATTAGA+GGG | - | chr3_3:44482755-44482774 | None:intergenic | 20.0% |
| !! | TAAATTTGAGGAAAAATTAG+AGG | - | chr3_3:44482756-44482775 | None:intergenic | 20.0% |
| !! | AAATTTGAGAGAAAATTAAG+AGG | + | chr3_3:44483688-44483707 | Msa0453710:intron | 20.0% |
| !! | AATTTGAGAGAAAATTAAGA+GGG | + | chr3_3:44483689-44483708 | Msa0453710:intron | 20.0% |
| !! | TTAGAAAGTGAAAAAACATA+AGG | + | chr3_3:44483721-44483740 | Msa0453710:intron | 20.0% |
| !! | TAGAAAGTGAAAAAACATAA+GGG | + | chr3_3:44483722-44483741 | Msa0453710:intron | 20.0% |
| !! | AAAACGCTAAAAAAAAGTTA+CGG | + | chr3_3:44483749-44483768 | Msa0453710:intron | 20.0% |
| !! | AAATGTTGAAAATATAGTAG+GGG | - | chr3_3:44483827-44483846 | None:intergenic | 20.0% |
| !! | TTGAAGATAATGTGTTAATT+TGG | - | chr3_3:44484064-44484083 | None:intergenic | 20.0% |
| !! | ACGGATAAAAGATTATTTAT+TGG | - | chr3_3:44484725-44484744 | None:intergenic | 20.0% |
| !!! | TTTTTTAGATGGAATTTGTT+AGG | + | chr3_3:44485109-44485128 | Msa0453710:intron | 20.0% |
| !!! | TTAACTTTGTTATTTCTAAG+GGG | + | chr3_3:44485507-44485526 | Msa0453710:intron | 20.0% |
| !! | AAAAACTAAAACAAAGAGAA+CGG | - | chr3_3:44485655-44485674 | None:intergenic | 20.0% |
| !!! | TTTAGTTTTTGATATGTATG+TGG | + | chr3_3:44485665-44485684 | Msa0453710:intron | 20.0% |
| !! | GAGATATGTGTTTAAATTAA+TGG | + | chr3_3:44486057-44486076 | Msa0453710:intron | 20.0% |
| !! | AATCAATCACAATAAATGTT+AGG | - | chr3_3:44486095-44486114 | None:intergenic | 20.0% |
| !! | GAAACAAAACAAACAAATAT+GGG | - | chr3_3:44486558-44486577 | None:intergenic | 20.0% |
| !! | TGAAACAAAACAAACAAATA+TGG | - | chr3_3:44486559-44486578 | None:intergenic | 20.0% |
| !! | CTTCTTACTTTATATATTTC+AGG | + | chr3_3:44486635-44486654 | Msa0453710:intron | 20.0% |
| !!! | ATATACTCTTTCACATATTT+TGG | - | chr3_3:44486706-44486725 | None:intergenic | 20.0% |
| !! | CATTGAATAACTAATGTATT+TGG | + | chr3_3:44486908-44486927 | Msa0453710:intron | 20.0% |
| !! | AAACTTCATTTAACATACTT+AGG | - | chr3_3:44487197-44487216 | None:intergenic | 20.0% |
| ! | AAAATACTTGTCATGTTACA+AGG | - | chr3_3:44481749-44481768 | None:intergenic | 25.0% |
| !! | TTGTAACATGACAAGTATTT+TGG | + | chr3_3:44481748-44481767 | Msa0453710:intron | 25.0% |
| ! | TATCATTTGCATGAGTTAAT+AGG | + | chr3_3:44481850-44481869 | Msa0453710:intron | 25.0% |
| ! | TAGATAATGATAGATTGTGA+AGG | + | chr3_3:44481940-44481959 | Msa0453710:intron | 25.0% |
| !!! | CAACCCTTTTAATTTGATTT+AGG | + | chr3_3:44482136-44482155 | Msa0453710:intron | 25.0% |
| ! | CAAAATCGTTTAAAAAAGCA+GGG | - | chr3_3:44482209-44482228 | None:intergenic | 25.0% |
| ! | TCAAAATCGTTTAAAAAAGC+AGG | - | chr3_3:44482210-44482229 | None:intergenic | 25.0% |
| !! | AGAAAACTCAAATTTTGCAT+TGG | - | chr3_3:44482330-44482349 | None:intergenic | 25.0% |
| !!! | TAATGGAGACAACTATTTTT+TGG | + | chr3_3:44482435-44482454 | Msa0453710:intron | 25.0% |
| !!! | TTTCAGAGTTTTATAAGATC+CGG | - | chr3_3:44482662-44482681 | None:intergenic | 25.0% |
| !! | TCTCGTCTTCTTTATTTAAA+AGG | - | chr3_3:44482838-44482857 | None:intergenic | 25.0% |
| !! | AGTGATATAGTATATTGACT+TGG | - | chr3_3:44482983-44483002 | None:intergenic | 25.0% |
| ! | ATTTGAGAGAAAATTAAGAG+GGG | + | chr3_3:44483690-44483709 | Msa0453710:intron | 25.0% |
| ! | TTATTCTGTTTAGAGAGTTT+AGG | - | chr3_3:44484094-44484113 | None:intergenic | 25.0% |
| !!! | TATTTTTTAAAAGCCTGACA+TGG | + | chr3_3:44484249-44484268 | Msa0453710:intron | 25.0% |
| ! | TGAAATTTGTAACACAAACT+AGG | - | chr3_3:44484295-44484314 | None:intergenic | 25.0% |
| !! | ATTTTACAATTGTGCTTCAT+TGG | - | chr3_3:44484407-44484426 | None:intergenic | 25.0% |
| ! | TAATAACCATACTTGACATT+AGG | + | chr3_3:44484491-44484510 | Msa0453710:intron | 25.0% |
| ! | TATATTTGTGTGAACTGTTA+AGG | - | chr3_3:44484532-44484551 | None:intergenic | 25.0% |
| ! | CTTCAAAAAAAAAAGGCAAA+AGG | + | chr3_3:44484774-44484793 | Msa0453710:intron | 25.0% |
| ! | CAAAAGGATAGAAATGAAAT+TGG | + | chr3_3:44484790-44484809 | Msa0453710:intron | 25.0% |
| !!! | TCTTTTAGATGGAATTTGTT+AGG | + | chr3_3:44484825-44484844 | Msa0453710:intron | 25.0% |
| ! | ATAAGGATGTCAAAAACAAA+AGG | + | chr3_3:44484928-44484947 | Msa0453710:intron | 25.0% |
| ! | TCTGGCCTAATTAAATTAAT+AGG | + | chr3_3:44485279-44485298 | Msa0453710:intron | 25.0% |
| !! | TTTCAATGATGTTACTTCAT+GGG | - | chr3_3:44485552-44485571 | None:intergenic | 25.0% |
| !! | ATTTCAATGATGTTACTTCA+TGG | - | chr3_3:44485553-44485572 | None:intergenic | 25.0% |
| ! | TTGATATGTATGTGGTAATT+AGG | + | chr3_3:44485673-44485692 | Msa0453710:intron | 25.0% |
| !!! | TGTGTTTTTGAACTTGATTT+TGG | + | chr3_3:44485732-44485751 | Msa0453710:intron | 25.0% |
| !!! | GTGTTTTTGAACTTGATTTT+GGG | + | chr3_3:44485733-44485752 | Msa0453710:intron | 25.0% |
| ! | ATTTGAATTGTGTTAACACT+AGG | + | chr3_3:44485875-44485894 | Msa0453710:intron | 25.0% |
| ! | TTGAGAATTGTGATAACATT+AGG | + | chr3_3:44485902-44485921 | Msa0453710:intron | 25.0% |
| ! | TTGAGAATTGTGATAACATT+AGG | + | chr3_3:44485902-44485921 | Msa0453710:intron | 25.0% |
| ! | TTGTGATAACATTAGGATAA+TGG | + | chr3_3:44485909-44485928 | Msa0453710:intron | 25.0% |
| ! | TTAAATTAATGGTTGTGTTC+TGG | + | chr3_3:44486068-44486087 | Msa0453710:intron | 25.0% |
| ! | TTTAACAATAAGAAGAAGCA+TGG | + | chr3_3:44486118-44486137 | Msa0453710:intron | 25.0% |
| !!! | GAGATTTTTTACATACTTAG+AGG | + | chr3_3:44486190-44486209 | Msa0453710:intron | 25.0% |
| ! | TATACAATCCAAACTAAAGA+AGG | - | chr3_3:44486244-44486263 | None:intergenic | 25.0% |
| !!! | TCTTTAGTTTGGATTGTATA+TGG | + | chr3_3:44486244-44486263 | Msa0453710:intron | 25.0% |
| ! | ATCAAAGCATAAGTTATGAT+AGG | - | chr3_3:44486423-44486442 | None:intergenic | 25.0% |
| ! | GAAAACACTCAATATTCAAA+AGG | - | chr3_3:44486608-44486627 | None:intergenic | 25.0% |
| !! | AATATTGAGTGTTTTCCTTT+TGG | + | chr3_3:44486612-44486631 | Msa0453710:intron | 25.0% |
| ! | ATATAAAGTAAGAAGCCAAA+AGG | - | chr3_3:44486630-44486649 | None:intergenic | 25.0% |
| !! | TATGTGAAAGAGTATATTGA+AGG | + | chr3_3:44486709-44486728 | Msa0453710:CDS | 25.0% |
| !! | TAAGCAAAACACAACTTTTT+AGG | + | chr3_3:44486883-44486902 | Msa0453710:intron | 25.0% |
| !! | TAAGCAAAAATCAACGTTTT+AGG | - | chr3_3:44486972-44486991 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATATATGTGAC+CGG | + | chr3_3:44486982-44487001 | Msa0453710:intron | 25.0% |
| !!! | ATGCAAAAGAAGTATTGAAA+GGG | - | chr3_3:44487029-44487048 | None:intergenic | 25.0% |
| !!! | AATGCAAAAGAAGTATTGAA+AGG | - | chr3_3:44487030-44487049 | None:intergenic | 25.0% |
| !! | TTAACTTATTGACTAGCAAA+GGG | - | chr3_3:44487278-44487297 | None:intergenic | 25.0% |
| !! | ATTAACTTATTGACTAGCAA+AGG | - | chr3_3:44487279-44487298 | None:intergenic | 25.0% |
| !! | AATCTGTCAAGATAGAATTT+TGG | + | chr3_3:44487380-44487399 | Msa0453710:CDS | 25.0% |
| ! | ATCAATTCTTCAAAATTCCA+AGG | - | chr3_3:44487470-44487489 | None:intergenic | 25.0% |
| !!! | TGGAATTTTGAAGAATTGAT+TGG | + | chr3_3:44487470-44487489 | Msa0453710:exon | 25.0% |
| TAGCACTTAAAACGAAATTG+TGG | - | chr3_3:44481509-44481528 | None:intergenic | 30.0% | |
| ! | TCTTTTGTGCATATGTAATC+AGG | + | chr3_3:44481699-44481718 | Msa0453710:intron | 30.0% |
| GAAATACTTGTCATGTTACA+AGG | + | chr3_3:44481774-44481793 | Msa0453710:intron | 30.0% | |
| ! | TACAAGGCACAATTTTCATA+TGG | + | chr3_3:44481790-44481809 | Msa0453710:intron | 30.0% |
| AAAGTTTATCCAGTCATATG+TGG | - | chr3_3:44481908-44481927 | None:intergenic | 30.0% | |
| ! | TAGATTGTGAAGGTTTTTCT+TGG | + | chr3_3:44481950-44481969 | Msa0453710:intron | 30.0% |
| ! | AGATTGTGAAGGTTTTTCTT+GGG | + | chr3_3:44481951-44481970 | Msa0453710:intron | 30.0% |
| ATTCCATTCACACATGTATT+TGG | + | chr3_3:44482103-44482122 | Msa0453710:intron | 30.0% | |
| AATCCAAATACATGTGTGAA+TGG | - | chr3_3:44482109-44482128 | None:intergenic | 30.0% | |
| CAAATTAAAAGGGTTGTGAA+TGG | - | chr3_3:44482132-44482151 | None:intergenic | 30.0% | |
| !! | ATTTAGGCATAAAGCACTTT+TGG | + | chr3_3:44482152-44482171 | Msa0453710:intron | 30.0% |
| GCGTGAAAAGAATATTGAAA+GGG | - | chr3_3:44482405-44482424 | None:intergenic | 30.0% | |
| TGCGTGAAAAGAATATTGAA+AGG | - | chr3_3:44482406-44482425 | None:intergenic | 30.0% | |
| AAAAAATTGTGTGAGATGCT+GGG | - | chr3_3:44482527-44482546 | None:intergenic | 30.0% | |
| AAAAAAATTGTGTGAGATGC+TGG | - | chr3_3:44482528-44482547 | None:intergenic | 30.0% | |
| GTCACATGAGTATAAATTTG+AGG | - | chr3_3:44482768-44482787 | None:intergenic | 30.0% | |
| AAAGAAGACGAGAATAAGTT+TGG | + | chr3_3:44482845-44482864 | Msa0453710:intron | 30.0% | |
| ATACTATATCACTTTAGTGC+AGG | + | chr3_3:44482990-44483009 | Msa0453710:intron | 30.0% | |
| TACTATATCACTTTAGTGCA+GGG | + | chr3_3:44482991-44483010 | Msa0453710:intron | 30.0% | |
| CTCAAATTTACACTAAAGCA+GGG | - | chr3_3:44483677-44483696 | None:intergenic | 30.0% | |
| TCTCAAATTTACACTAAAGC+AGG | - | chr3_3:44483678-44483697 | None:intergenic | 30.0% | |
| ! | AGTTACGGACTAAAAAGTTA+CGG | + | chr3_3:44483764-44483783 | Msa0453710:intron | 30.0% |
| ! | AAAAGTTACGGACTAAAATC+AGG | + | chr3_3:44483776-44483795 | Msa0453710:intron | 30.0% |
| ! | AAAGTTACGGACTAAAATCA+GGG | + | chr3_3:44483777-44483796 | Msa0453710:intron | 30.0% |
| !! | CTTCTTGTATTAGCTTTAAG+TGG | - | chr3_3:44484019-44484038 | None:intergenic | 30.0% |
| ATTGTGGTATGAGAATTTGA+AGG | + | chr3_3:44484603-44484622 | Msa0453710:intron | 30.0% | |
| TATCCGTAAGATCATTGATA+TGG | + | chr3_3:44484738-44484757 | Msa0453710:intron | 30.0% | |
| CTACCATATCAATGATCTTA+CGG | - | chr3_3:44484744-44484763 | None:intergenic | 30.0% | |
| CAAATGAGCGAGAAAAAATT+AGG | + | chr3_3:44484873-44484892 | Msa0453710:intron | 30.0% | |
| ATCATACGTGATCATTGATA+TGG | + | chr3_3:44485023-44485042 | Msa0453710:intron | 30.0% | |
| TCTTCAAAAAAAAAGGCAAG+AGG | + | chr3_3:44485058-44485077 | Msa0453710:intron | 30.0% | |
| AAAAAAAAAGGCAAGAGGAT+AGG | + | chr3_3:44485063-44485082 | Msa0453710:intron | 30.0% | |
| !!! | GTGCAATGCATTTTTTTAGA+TGG | + | chr3_3:44485098-44485117 | Msa0453710:intron | 30.0% |
| AACCTAATAAAGCAAATGAG+CGG | + | chr3_3:44484861-44484880 | Msa0453710:intron | 30.0% | |
| ATGTAATATACTCGTATACG+AGG | + | chr3_3:44485226-44485245 | Msa0453710:intron | 30.0% | |
| !!! | CTTTTTTATAAGCCTAAGTC+TGG | + | chr3_3:44485261-44485280 | Msa0453710:intron | 30.0% |
| AATTTAATTAGGCCAGACTT+AGG | - | chr3_3:44485276-44485295 | None:intergenic | 30.0% | |
| ACCCATTTATTAAACGAGTT+AGG | + | chr3_3:44485324-44485343 | Msa0453710:intron | 30.0% | |
| GCCTAACTCGTTTAATAAAT+GGG | - | chr3_3:44485328-44485347 | None:intergenic | 30.0% | |
| !! | ATGTGTATGTGTTTTTGAAC+TGG | + | chr3_3:44485775-44485794 | Msa0453710:intron | 30.0% |
| !! | TGTGTTTTTGAACTGGATTT+TGG | + | chr3_3:44485782-44485801 | Msa0453710:intron | 30.0% |
| !! | TGTGTTTTTGAACTGGATTT+TGG | + | chr3_3:44485782-44485801 | Msa0453710:intron | 30.0% |
| !! | GTGTTTTTGAACTGGATTTT+GGG | + | chr3_3:44485783-44485802 | Msa0453710:intron | 30.0% |
| !! | ATGTGAATGTGTTTTTGAAC+TGG | + | chr3_3:44485973-44485992 | Msa0453710:intron | 30.0% |
| ! | ATACTTAGAGGTATACTACA+TGG | + | chr3_3:44486202-44486221 | Msa0453710:intron | 30.0% |
| ! | ATCCAAAACCATTTTGTCTA+CGG | - | chr3_3:44486270-44486289 | None:intergenic | 30.0% |
| AATGTACAGACTGTTTGAAA+CGG | + | chr3_3:44486531-44486550 | Msa0453710:intron | 30.0% | |
| ! | TGAGAATTTTAAGCATACCT+TGG | - | chr3_3:44486807-44486826 | None:intergenic | 30.0% |
| !!! | AAATCAACGTTTTAGGTTCA+TGG | - | chr3_3:44486965-44486984 | None:intergenic | 30.0% |
| GATTATTCGTTGCCTATATA+TGG | - | chr3_3:44487092-44487111 | None:intergenic | 30.0% | |
| ATAGGCAACGAATAATCAAT+TGG | + | chr3_3:44487095-44487114 | Msa0453710:intron | 30.0% | |
| CGAATAATCAATTGGATTGA+TGG | + | chr3_3:44487103-44487122 | Msa0453710:intron | 30.0% | |
| TTAGATCTTACCATACGTAT+AGG | + | chr3_3:44487236-44487255 | Msa0453710:intron | 30.0% | |
| ! | TAACTTATTGACTAGCAAAG+GGG | - | chr3_3:44487277-44487296 | None:intergenic | 30.0% |
| CTCATGTTACCATTATTTGT+AGG | + | chr3_3:44487356-44487375 | Msa0453710:intron | 30.0% | |
| GACAGATTTCCTACAAATAA+TGG | - | chr3_3:44487368-44487387 | None:intergenic | 30.0% | |
| GAAATATTTGGACGACAAGT+TGG | + | chr3_3:44481386-44481405 | Msa0453710:CDS | 35.0% | |
| ! | ATGGAATATACTTGCTGAGT+TGG | + | chr3_3:44481475-44481494 | Msa0453710:CDS | 35.0% |
| TTTGTAAGAGAACCTGTAAG+CGG | - | chr3_3:44481591-44481610 | None:intergenic | 35.0% | |
| TTTGTAAGAGAACCTGTAAG+CGG | - | chr3_3:44481591-44481610 | None:intergenic | 35.0% | |
| ACAGGTTCTCTTACAAATGA+TGG | + | chr3_3:44481594-44481613 | Msa0453710:intron | 35.0% | |
| ! | AGGCACAATTTTCATATGGA+AGG | + | chr3_3:44481794-44481813 | Msa0453710:intron | 35.0% |
| TCATATGGAAGGTCGTTTAT+CGG | + | chr3_3:44481805-44481824 | Msa0453710:intron | 35.0% | |
| AATAGGTGTACAGAATAACG+CGG | + | chr3_3:44481867-44481886 | Msa0453710:intron | 35.0% | |
| GAAATTCTACCACATATGAC+TGG | + | chr3_3:44481896-44481915 | Msa0453710:intron | 35.0% | |
| CTCTCCAATAAAGACCTAAT+AGG | + | chr3_3:44482688-44482707 | Msa0453710:intron | 35.0% | |
| TGCACCTATTAGGTCTTTAT+TGG | - | chr3_3:44482695-44482714 | None:intergenic | 35.0% | |
| CAAATATGTCGATGCAGATT+AGG | - | chr3_3:44482905-44482924 | None:intergenic | 35.0% | |
| ACTATATCACTTTAGTGCAG+GGG | + | chr3_3:44482992-44483011 | Msa0453710:intron | 35.0% | |
| ACCTAGACTTTCAATACTAG+TGG | + | chr3_3:44483018-44483037 | Msa0453710:intron | 35.0% | |
| CCTAGACTTTCAATACTAGT+GGG | + | chr3_3:44483019-44483038 | Msa0453710:intron | 35.0% | |
| CTAGACTTTCAATACTAGTG+GGG | + | chr3_3:44483020-44483039 | Msa0453710:intron | 35.0% | |
| AAAATAAATCGGACCTGAAC+TGG | + | chr3_3:44483614-44483633 | Msa0453710:intron | 35.0% | |
| AATTTACACTAAAGCAGGGA+CGG | - | chr3_3:44483673-44483692 | None:intergenic | 35.0% | |
| AGAGCAGTATTAAGCGATAA+AGG | - | chr3_3:44483852-44483871 | None:intergenic | 35.0% | |
| AGTACGTTGCACAAATTGAA+AGG | - | chr3_3:44484347-44484366 | None:intergenic | 35.0% | |
| GTTATGCCTAATGTCAAGTA+TGG | - | chr3_3:44484500-44484519 | None:intergenic | 35.0% | |
| ! | GTGCAATGCATTCTTTTAGA+TGG | + | chr3_3:44484814-44484833 | Msa0453710:intron | 35.0% |
| ! | TCTCGCTCATTTGCTTTATT+AGG | - | chr3_3:44484866-44484885 | None:intergenic | 35.0% |
| CAAGAGGATAGGAATGAAAT+TGG | + | chr3_3:44485074-44485093 | Msa0453710:intron | 35.0% | |
| ACCTAATAAAGCAAATGAGC+GGG | + | chr3_3:44484862-44484881 | Msa0453710:intron | 35.0% | |
| CAAATGAGCGGGAAAAAATT+AGG | + | chr3_3:44485157-44485176 | Msa0453710:intron | 35.0% | |
| TAATATACTCGTATACGAGG+TGG | + | chr3_3:44485229-44485248 | Msa0453710:intron | 35.0% | |
| GGCTTATAAAAAAGCCTATC+AGG | - | chr3_3:44485255-44485274 | None:intergenic | 35.0% | |
| GGCCTAACTCGTTTAATAAA+TGG | - | chr3_3:44485329-44485348 | None:intergenic | 35.0% | |
| ATGGGAAAAGAACATGGTAA+TGG | - | chr3_3:44485534-44485553 | None:intergenic | 35.0% | |
| TACTTCATGGGAAAAGAACA+TGG | - | chr3_3:44485540-44485559 | None:intergenic | 35.0% | |
| !! | ATGTGCATGTGTTTTTGAAC+TGG | + | chr3_3:44485825-44485844 | Msa0453710:intron | 35.0% |
| ! | ATCTGGTTCCTTCTTTAGTT+TGG | + | chr3_3:44486233-44486252 | Msa0453710:intron | 35.0% |
| ATACAACTTCTTCGATAACC+TGG | + | chr3_3:44486498-44486517 | Msa0453710:intron | 35.0% | |
| TGTACATTACATTCATAGCC+AGG | - | chr3_3:44486519-44486538 | None:intergenic | 35.0% | |
| CTACAAATGACAGAATTGAG+AGG | - | chr3_3:44486676-44486695 | None:intergenic | 35.0% | |
| TCTACTTTGGACTATAACCA+AGG | + | chr3_3:44486787-44486806 | Msa0453710:CDS | 35.0% | |
| TGCTTATAAATGTGACCAGA+GGG | - | chr3_3:44486869-44486888 | None:intergenic | 35.0% | |
| TTGCTTATAAATGTGACCAG+AGG | - | chr3_3:44486870-44486889 | None:intergenic | 35.0% | |
| CTTTGCAGATAGCCATATAT+AGG | + | chr3_3:44487077-44487096 | Msa0453710:intron | 35.0% | |
| CATACTTAGGACAAAATGCT+GGG | - | chr3_3:44487184-44487203 | None:intergenic | 35.0% | |
| ACATACTTAGGACAAAATGC+TGG | - | chr3_3:44487185-44487204 | None:intergenic | 35.0% | |
| ! | AACTTATTGACTAGCAAAGG+GGG | - | chr3_3:44487276-44487295 | None:intergenic | 35.0% |
| TGTATACAGGAGCAGATGTA+TGG | + | chr3_3:44481456-44481475 | Msa0453710:CDS | 40.0% | |
| TTGTAAGAGAACCTGTAAGC+GGG | - | chr3_3:44481590-44481609 | None:intergenic | 40.0% | |
| CTTACAAATGATCCGCTTAC+AGG | + | chr3_3:44481603-44481622 | Msa0453710:intron | 40.0% | |
| ! | TGAAGGTTTTTCTTGGGACT+TGG | + | chr3_3:44481957-44481976 | Msa0453710:intron | 40.0% |
| ! | GAAGGTTTTTCTTGGGACTT+GGG | + | chr3_3:44481958-44481977 | Msa0453710:intron | 40.0% |
| ! | AAGGTTTTTCTTGGGACTTG+GGG | + | chr3_3:44481959-44481978 | Msa0453710:intron | 40.0% |
| GGGTTTGTATTCCATTCACA+CGG | + | chr3_3:44482080-44482099 | Msa0453710:intron | 40.0% | |
| AATCGCACAATTGCGATACT+TGG | - | chr3_3:44482182-44482201 | None:intergenic | 40.0% | |
| TTCCTTGACTAGTATTCCGA+AGG | + | chr3_3:44482362-44482381 | Msa0453710:intron | 40.0% | |
| ATTGTTAACCAGTGTGCCTT+CGG | - | chr3_3:44482381-44482400 | None:intergenic | 40.0% | |
| ! | TTCACGCAGAGCATCTATAA+TGG | + | chr3_3:44482418-44482437 | Msa0453710:intron | 40.0% |
| TAAGACCCCCAATCTTAAGT+CGG | - | chr3_3:44482630-44482649 | None:intergenic | 40.0% | |
| AATTATGAGACCATCTCCGA+TGG | - | chr3_3:44482723-44482742 | None:intergenic | 40.0% | |
| TCGGAGATGGTCTCATAATT+TGG | + | chr3_3:44482723-44482742 | Msa0453710:intron | 40.0% | |
| ! | CCCACTAGTATTGAAAGTCT+AGG | - | chr3_3:44483022-44483041 | None:intergenic | 40.0% |
| ! | AGAGCGTTTCGCTCATTATT+TGG | + | chr3_3:44483205-44483224 | Msa0453710:intron | 40.0% |
| ! | CTTCTGGATGTGAGTTTTTG+CGG | - | chr3_3:44483939-44483958 | None:intergenic | 40.0% |
| CATCCAGAAGCTACTAATTG+AGG | + | chr3_3:44483949-44483968 | Msa0453710:intron | 40.0% | |
| AAGCCTCAATTAGTAGCTTC+TGG | - | chr3_3:44483955-44483974 | None:intergenic | 40.0% | |
| CGTTGAAATTGCATTCGACA+TGG | + | chr3_3:44483986-44484005 | Msa0453710:intron | 40.0% | |
| ! | AGGCTTTTAGACAGGCTAAT+AGG | - | chr3_3:44484275-44484294 | None:intergenic | 40.0% |
| ! | CACAAACTAGGCTTTTAGAC+AGG | - | chr3_3:44484283-44484302 | None:intergenic | 40.0% |
| ! | TCCCGCTCATTTGCTTTATT+AGG | - | chr3_3:44485150-44485169 | None:intergenic | 40.0% |
| CACATGCAGTTCACTATCAT+GGG | + | chr3_3:44485424-44485443 | Msa0453710:intron | 40.0% | |
| GCATGGATGAAGATTTACTC+TGG | + | chr3_3:44486135-44486154 | Msa0453710:intron | 40.0% | |
| TAAAGAAGGAACCAGATGAG+TGG | - | chr3_3:44486230-44486249 | None:intergenic | 40.0% | |
| GTATATGGCCGTAGACAAAA+TGG | + | chr3_3:44486259-44486278 | Msa0453710:CDS | 40.0% | |
| GTAAAGCCACTGTTATCTGT+CGG | + | chr3_3:44486733-44486752 | Msa0453710:CDS | 40.0% | |
| TAAAGCCACTGTTATCTGTC+GGG | + | chr3_3:44486734-44486753 | Msa0453710:CDS | 40.0% | |
| TGGGATACTTGCAACTACAA+CGG | + | chr3_3:44486763-44486782 | Msa0453710:CDS | 40.0% | |
| CAACTACAACGGTTCTACTT+TGG | + | chr3_3:44486774-44486793 | Msa0453710:CDS | 40.0% | |
| TTGCTTATATATGTGACCGG+AGG | + | chr3_3:44486985-44487004 | Msa0453710:intron | 40.0% | |
| TGCTTATATATGTGACCGGA+GGG | + | chr3_3:44486986-44487005 | Msa0453710:intron | 40.0% | |
| ATGTATTCACATACTCCCTC+CGG | - | chr3_3:44487004-44487023 | None:intergenic | 40.0% | |
| ! | ATCAATTGGATTGATGGCAG+TGG | + | chr3_3:44487109-44487128 | Msa0453710:intron | 40.0% |
| ! | TGCATTTGACTTCACAACCA+AGG | + | chr3_3:44487144-44487163 | Msa0453710:CDS | 40.0% |
| ! | GCATTTGACTTCACAACCAA+GGG | + | chr3_3:44487145-44487164 | Msa0453710:CDS | 40.0% |
| GGGATGAAATCCTATACGTA+TGG | - | chr3_3:44487249-44487268 | None:intergenic | 40.0% | |
| ! | ACTTATTGACTAGCAAAGGG+GGG | - | chr3_3:44487275-44487294 | None:intergenic | 40.0% |
| TACTCAGTCTCGTGTATATC+AGG | + | chr3_3:44487318-44487337 | Msa0453710:intron | 40.0% | |
| TGTAGACCTCGAGTGTATAC+AGG | + | chr3_3:44481443-44481462 | Msa0453710:CDS | 45.0% | |
| AAAGGAATGCTTGCGCAAGA+TGG | + | chr3_3:44482059-44482078 | Msa0453710:intron | 45.0% | |
| AAGGAATGCTTGCGCAAGAT+GGG | + | chr3_3:44482060-44482079 | Msa0453710:intron | 45.0% | |
| GTGAATGGAATCCGTGTGAA+TGG | - | chr3_3:44482094-44482113 | None:intergenic | 45.0% | |
| TGCCTTCGGAATACTAGTCA+AGG | - | chr3_3:44482367-44482386 | None:intergenic | 45.0% | |
| AATTGTGTGAGATGCTGGGT+TGG | - | chr3_3:44482523-44482542 | None:intergenic | 45.0% | |
| CGTGGATCCGACTTAAGATT+GGG | + | chr3_3:44482620-44482639 | Msa0453710:intron | 45.0% | |
| GTGGATCCGACTTAAGATTG+GGG | + | chr3_3:44482621-44482640 | Msa0453710:intron | 45.0% | |
| TGGATCCGACTTAAGATTGG+GGG | + | chr3_3:44482622-44482641 | Msa0453710:intron | 45.0% | |
| TAATAGGTGCATCCTGCCAT+CGG | + | chr3_3:44482704-44482723 | Msa0453710:intron | 45.0% | |
| ATATCACTTTAGTGCAGGGG+CGG | + | chr3_3:44482995-44483014 | Msa0453710:intron | 45.0% | |
| GAGATGTCAAATGCTCTAGC+AGG | + | chr3_3:44483159-44483178 | Msa0453710:intron | 45.0% | |
| AATCAGGGACTGACCTAATG+TGG | + | chr3_3:44483792-44483811 | Msa0453710:intron | 45.0% | |
| ATCAGGGACTGACCTAATGT+GGG | + | chr3_3:44483793-44483812 | Msa0453710:intron | 45.0% | |
| ! | CTTTTAGTAGGCCTACCCAT+AGG | + | chr3_3:44485357-44485376 | Msa0453710:intron | 45.0% |
| ! | CCATGATAGTGAACTGCATG+TGG | - | chr3_3:44485426-44485445 | None:intergenic | 45.0% |
| CCACATGCAGTTCACTATCA+TGG | + | chr3_3:44485423-44485442 | Msa0453710:intron | 45.0% | |
| ATGCAGTTCACTATCATGGG+TGG | + | chr3_3:44485427-44485446 | Msa0453710:intron | 45.0% | |
| TATCATGGGTGGAAGAAAGC+TGG | + | chr3_3:44485438-44485457 | Msa0453710:intron | 45.0% | |
| AAGATCGGCAATCTGTCGAT+GGG | - | chr3_3:44485591-44485610 | None:intergenic | 45.0% | |
| TTCAGAGCGAGTTCGAAGAT+CGG | - | chr3_3:44485606-44485625 | None:intergenic | 45.0% | |
| TCTGGACACCACTTTGCATT+TGG | + | chr3_3:44486153-44486172 | Msa0453710:intron | 45.0% | |
| CACAAGCTCCAAATGCAAAG+TGG | - | chr3_3:44486164-44486183 | None:intergenic | 45.0% | |
| ACTACATGGTTCCACTCATC+TGG | + | chr3_3:44486216-44486235 | Msa0453710:intron | 45.0% | |
| ! | GGCCGTAGACAAAATGGTTT+TGG | + | chr3_3:44486265-44486284 | Msa0453710:CDS | 45.0% |
| AAAGCCACTGTTATCTGTCG+GGG | + | chr3_3:44486735-44486754 | Msa0453710:CDS | 45.0% | |
| ! | TGTTATCTGTCGGGGAGTAT+TGG | + | chr3_3:44486743-44486762 | Msa0453710:CDS | 45.0% |
| !! | GTTATCTGTCGGGGAGTATT+GGG | + | chr3_3:44486744-44486763 | Msa0453710:CDS | 45.0% |
| ! | CTTATTGACTAGCAAAGGGG+GGG | - | chr3_3:44487274-44487293 | None:intergenic | 45.0% |
| TCCAAGGTGACTGATCTTGA+AGG | - | chr3_3:44487454-44487473 | None:intergenic | 45.0% | |
| !! | TATAAATTAAAAACAAAAAT+CGG | + | chr3_3:44483362-44483381 | Msa0453710:intron | 5.0% |
| !!! | TCTATTTTATAATTTTTTTT+TGG | - | chr3_3:44485000-44485019 | None:intergenic | 5.0% |
| !! | AAAAAAAATTATAAAATAGA+AGG | + | chr3_3:44485000-44485019 | Msa0453710:intron | 5.0% |
| TCTGCTCCTGTATACACTCG+AGG | - | chr3_3:44481452-44481471 | None:intergenic | 50.0% | |
| ! | CTGGCAGTCACATTTTCGTG+TGG | - | chr3_3:44481996-44482015 | None:intergenic | 50.0% |
| AGCATTCCTTTGCTAGCTGC+TGG | - | chr3_3:44482015-44482034 | None:intergenic | 50.0% | |
| ! | CTAGTATTCCGAAGGCACAC+TGG | + | chr3_3:44482370-44482389 | Msa0453710:intron | 50.0% |
| GCGTGGATCCGACTTAAGAT+TGG | + | chr3_3:44482619-44482638 | Msa0453710:intron | 50.0% | |
| GATGGCAGGATGCACCTATT+AGG | - | chr3_3:44482705-44482724 | None:intergenic | 50.0% | |
| TAGCAGGATACCCGTGCATA+CGG | + | chr3_3:44483175-44483194 | Msa0453710:intron | 50.0% | |
| AAATCGGACCTGAACTGGTG+TGG | + | chr3_3:44483619-44483638 | Msa0453710:intron | 50.0% | |
| ! | CTGGATGTGAGTTTTTGCGG+CGG | - | chr3_3:44483936-44483955 | None:intergenic | 50.0% |
| ACAGGCTAATAGGCCATGTC+AGG | - | chr3_3:44484265-44484284 | None:intergenic | 50.0% | |
| ! | TAGACTTTTGACCCGTGCGT+CGG | + | chr3_3:44484673-44484692 | Msa0453710:intron | 50.0% |
| GGCCTACTAAAAGCTCGGTT+CGG | - | chr3_3:44485350-44485369 | None:intergenic | 50.0% | |
| GGGTAGGCCTACTAAAAGCT+CGG | - | chr3_3:44485355-44485374 | None:intergenic | 50.0% | |
| CTACAGCTAGGGGTGAGAAT+AGG | - | chr3_3:44485402-44485421 | None:intergenic | 50.0% | |
| CTATTCTCACCCCTAGCTGT+AGG | + | chr3_3:44485400-44485419 | Msa0453710:intron | 50.0% | |
| GCAATCTGTCGATGGGAACT+AGG | - | chr3_3:44485584-44485603 | None:intergenic | 50.0% | |
| GAAGATCGGCAATCTGTCGA+TGG | - | chr3_3:44485592-44485611 | None:intergenic | 50.0% | |
| TACTCCCCGACAGATAACAG+TGG | - | chr3_3:44486742-44486761 | None:intergenic | 50.0% | |
| TGGTTACCAAGTACTCCCTC+TGG | + | chr3_3:44486851-44486870 | Msa0453710:intron | 50.0% | |
| !! | ATGTGACCAGAGGGAGTACT+TGG | - | chr3_3:44486860-44486879 | None:intergenic | 50.0% |
| CACAACCAAGGGAATTCTCC+AGG | + | chr3_3:44487156-44487175 | Msa0453710:CDS | 50.0% | |
| AGGACAAAATGCTGGGTACC+TGG | - | chr3_3:44487177-44487196 | None:intergenic | 50.0% | |
| GCCTTCAAGATCAGTCACCT+TGG | + | chr3_3:44487450-44487469 | Msa0453710:CDS | 50.0% | |
| ACCTGTAAGCGGGTGTCAGT+GGG | - | chr3_3:44481580-44481599 | None:intergenic | 55.0% | |
| AACCTGTAAGCGGGTGTCAG+TGG | - | chr3_3:44481581-44481600 | None:intergenic | 55.0% | |
| TGACTGCCAGCAGCTAGCAA+AGG | + | chr3_3:44482006-44482025 | Msa0453710:intron | 55.0% | |
| ! | GTGTGAGATGCTGGGTTGGA+GGG | - | chr3_3:44482519-44482538 | None:intergenic | 55.0% |
| ! | TGTGTGAGATGCTGGGTTGG+AGG | - | chr3_3:44482520-44482539 | None:intergenic | 55.0% |
| GGGGGTCTTAAGTGAGACTC+CGG | + | chr3_3:44482640-44482659 | Msa0453710:intron | 55.0% | |
| ATGAGACCATCTCCGATGGC+AGG | - | chr3_3:44482719-44482738 | None:intergenic | 55.0% | |
| AGCAGGATACCCGTGCATAC+GGG | + | chr3_3:44483176-44483195 | Msa0453710:intron | 55.0% | |
| ! | TGCCACACCATGCCTTGTTC+AGG | + | chr3_3:44483646-44483665 | Msa0453710:intron | 55.0% |
| GACCTGAACAAGGCATGGTG+TGG | - | chr3_3:44483651-44483670 | None:intergenic | 55.0% | |
| CGTATACGAGGTGGCCTGAT+AGG | + | chr3_3:44485238-44485257 | Msa0453710:intron | 55.0% | |
| ! | GGCCGAACCGAGCTTTTAGT+AGG | + | chr3_3:44485345-44485364 | Msa0453710:intron | 55.0% |
| TGCATGTGGCCTACAGCTAG+GGG | - | chr3_3:44485412-44485431 | None:intergenic | 55.0% | |
| CTGCATGTGGCCTACAGCTA+GGG | - | chr3_3:44485413-44485432 | None:intergenic | 55.0% | |
| ACTGCATGTGGCCTACAGCT+AGG | - | chr3_3:44485414-44485433 | None:intergenic | 55.0% | |
| GGGTACCTGGAGAATTCCCT+TGG | - | chr3_3:44487164-44487183 | None:intergenic | 55.0% | |
| TTGACTAGCAAAGGGGGGGA+GGG | - | chr3_3:44487270-44487289 | None:intergenic | 55.0% | |
| ATTGACTAGCAAAGGGGGGG+AGG | - | chr3_3:44487271-44487290 | None:intergenic | 55.0% | |
| AGCCACCTGGTGTGATTGGA+TGG | + | chr3_3:44487425-44487444 | Msa0453710:CDS | 55.0% | |
| CACCATCCAATCACACCAGG+TGG | - | chr3_3:44487430-44487449 | None:intergenic | 55.0% | |
| CACCTGGTGTGATTGGATGG+TGG | + | chr3_3:44487428-44487447 | Msa0453710:CDS | 55.0% | |
| GTGCATCCTGCCATCGGAGA+TGG | + | chr3_3:44482710-44482729 | Msa0453710:intron | 60.0% | |
| TCTCACCTGCCCGTATGCAC+GGG | - | chr3_3:44483188-44483207 | None:intergenic | 60.0% | |
| CTCTCACCTGCCCGTATGCA+CGG | - | chr3_3:44483189-44483208 | None:intergenic | 60.0% | |
| GGCAAGTGCCACACCAGTTC+AGG | - | chr3_3:44483630-44483649 | None:intergenic | 60.0% | |
| GGACGGACCTGAACAAGGCA+TGG | - | chr3_3:44483656-44483675 | None:intergenic | 60.0% | |
| AGCAGGGACGGACCTGAACA+AGG | - | chr3_3:44483661-44483680 | None:intergenic | 60.0% | |
| ! | GGGGCACTTGCACCCACATT+AGG | - | chr3_3:44483808-44483827 | None:intergenic | 60.0% |
| ! | CTTTTGACCCGTGCGTCGGA+CGG | + | chr3_3:44484677-44484696 | Msa0453710:intron | 60.0% |
| ! | TTTTGACCCGTGCGTCGGAC+GGG | + | chr3_3:44484678-44484697 | Msa0453710:intron | 60.0% |
| AGAAAACCCGTCCGACGCAC+GGG | - | chr3_3:44484687-44484706 | None:intergenic | 60.0% | |
| GAGAAAACCCGTCCGACGCA+CGG | - | chr3_3:44484688-44484707 | None:intergenic | 60.0% | |
| GCTAGGGGTGAGAATAGGCC+AGG | - | chr3_3:44485397-44485416 | None:intergenic | 60.0% | |
| TGACTAGCAAAGGGGGGGAG+GGG | - | chr3_3:44487269-44487288 | None:intergenic | 60.0% | |
| TGGCGTCTGCGTGATGCTCA+AGG | + | chr3_3:44487400-44487419 | Msa0453710:CDS | 60.0% | |
| GGCGTCTGCGTGATGCTCAA+GGG | + | chr3_3:44487401-44487420 | Msa0453710:CDS | 60.0% | |
| GATGCTCAAGGGAAGCCACC+TGG | + | chr3_3:44487412-44487431 | Msa0453710:CDS | 60.0% | |
| GGGAAGCCACCTGGTGTGAT+TGG | + | chr3_3:44487421-44487440 | Msa0453710:CDS | 60.0% | |
| GGCCACCATCCAATCACACC+AGG | - | chr3_3:44487433-44487452 | None:intergenic | 60.0% | |
| GCCCACTGACACCCGCTTAC+AGG | + | chr3_3:44481576-44481595 | Msa0453710:intron | 65.0% | |
| GGATACCCGTGCATACGGGC+AGG | + | chr3_3:44483180-44483199 | Msa0453710:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 44481383 | 44487631 | 44481383 | ID=Msa0453710;Name=Msa0453710 |
| chr3_3 | mRNA | 44481383 | 44487631 | 44481383 | ID=Msa0453710-mRNA-1;Parent=Msa0453710;Name=Msa0453710-mRNA-1;_AED=0.31;_eAED=0.43;_QI=0|0|0.33|1|1|1|6|151|228 |
| chr3_3 | exon | 44481383 | 44481532 | 44481383 | ID=Msa0453710-mRNA-1:exon:8142;Parent=Msa0453710-mRNA-1 |
| chr3_3 | exon | 44485527 | 44485640 | 44485527 | ID=Msa0453710-mRNA-1:exon:8143;Parent=Msa0453710-mRNA-1 |
| chr3_3 | exon | 44486251 | 44486348 | 44486251 | ID=Msa0453710-mRNA-1:exon:8144;Parent=Msa0453710-mRNA-1 |
| chr3_3 | exon | 44486657 | 44486808 | 44486657 | ID=Msa0453710-mRNA-1:exon:8145;Parent=Msa0453710-mRNA-1 |
| chr3_3 | exon | 44487129 | 44487198 | 44487129 | ID=Msa0453710-mRNA-1:exon:8146;Parent=Msa0453710-mRNA-1 |
| chr3_3 | exon | 44487378 | 44487631 | 44487378 | ID=Msa0453710-mRNA-1:exon:8147;Parent=Msa0453710-mRNA-1 |
| chr3_3 | CDS | 44481383 | 44481532 | 44481383 | ID=Msa0453710-mRNA-1:cds;Parent=Msa0453710-mRNA-1 |
| chr3_3 | CDS | 44485527 | 44485640 | 44485527 | ID=Msa0453710-mRNA-1:cds;Parent=Msa0453710-mRNA-1 |
| chr3_3 | CDS | 44486251 | 44486348 | 44486251 | ID=Msa0453710-mRNA-1:cds;Parent=Msa0453710-mRNA-1 |
| chr3_3 | CDS | 44486657 | 44486808 | 44486657 | ID=Msa0453710-mRNA-1:cds;Parent=Msa0453710-mRNA-1 |
| chr3_3 | CDS | 44487129 | 44487198 | 44487129 | ID=Msa0453710-mRNA-1:cds;Parent=Msa0453710-mRNA-1 |
| chr3_3 | CDS | 44487378 | 44487480 | 44487378 | ID=Msa0453710-mRNA-1:cds;Parent=Msa0453710-mRNA-1 |
| chr3_3 | three_prime_UTR | 44487481 | 44487631 | 44487481 | ID=Msa0453710-mRNA-1:three_prime_utr;Parent=Msa0453710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
