AlfalfaGEDB | Msa0455480

M. sativa cultivar zhongmu-4 / Msa0455480

KEGG: K04730|K10859
GO: GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0016020 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542
PFAM: PF00139.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0455480	XP_013460061.1	96.754	647	20	1	1	646	1	647	0.0	1273

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0455480	sp\|Q9FHG4\|LRKS7_ARATH	54.601	652	249	13	20	631	28	672	0.0	655

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0455480	A0A072UWU3	96.754	647	20	1	1	646	1	647	0.0	1273

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0093600	Msa0455480	0.841685	4.091331e-58	-8.615850e-47
Msa0455480	Msa0455520	0.995013	3.207707e-212	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0455480	MtrunA17_Chr3g0102451	96.754	647	20	1	1	646	1	647	0.0	1273
Msa0455480	MtrunA17_Chr5g0446651	55.064	701	236	17	1	643	1	680	0.0	666
Msa0455480	MtrunA17_Chr3g0078761	54.731	687	247	19	1	643	1	667	0.0	640
Msa0455480	MtrunA17_Chr5g0433941	45.156	671	296	17	22	634	28	684	1.26e-167	495
Msa0455480	MtrunA17_Chr7g0239371	36.547	643	328	20	5	600	4	613	1.98e-115	360
Msa0455480	MtrunA17_Chr7g0239381	35.981	642	329	17	7	599	8	616	1.04e-114	358
Msa0455480	MtrunA17_Chr1g0202201	36.916	642	321	20	23	610	15	626	1.77e-114	357
Msa0455480	MtrunA17_Chr3g0112111	37.520	637	310	20	20	603	24	625	2.27e-110	347
Msa0455480	MtrunA17_Chr7g0274651	37.595	657	325	22	5	604	21	649	1.89e-109	345
Msa0455480	MtrunA17_Chr8g0367071	36.270	681	331	21	6	628	23	658	4.20e-109	343

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0455480	AT5G55830.1	54.601	652	249	13	20	631	28	672	0.0	655
Msa0455480	AT5G03140.1	42.573	653	303	15	39	634	51	688	1.03e-152	458
Msa0455480	AT3G53380.1	42.795	694	308	18	6	628	9	684	1.92e-152	457
Msa0455480	AT5G42120.1	36.119	670	347	22	6	612	9	660	3.68e-114	357
Msa0455480	AT3G55550.1	39.080	609	290	19	49	606	50	628	5.80e-112	352
Msa0455480	AT4G02410.1	34.493	661	352	21	20	628	24	655	5.67e-104	330
Msa0455480	AT1G70130.1	37.113	582	303	16	54	600	55	608	1.69e-102	326
Msa0455480	AT2G37710.1	35.110	638	335	21	49	638	51	657	9.88e-101	322
Msa0455480	AT5G10530.1	35.076	593	302	17	68	614	70	625	4.25e-100	320
Msa0455480	AT5G06740.1	33.962	689	346	26	11	641	9	646	9.86e-98	313

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Find 123 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGCCGGAGCTGGAAGC+TGG	0.433270	3_3:-48400482	None:intergenic
AACGTTAACCGCCGGAACAA+TGG	0.438383	3_3:+48401768	Msa0455480:CDS
AAGAAGAGTAAAAGTTCTAT+AGG	0.344366	3_3:+48401211	Msa0455480:CDS
AAGATTGAGATTCTGTATGT+GGG	0.557507	3_3:+48400899	Msa0455480:CDS
AAGGAGGGTGATGTTGCGGA+GGG	0.624723	3_3:-48400405	None:intergenic
AAGGCTTTGCTTGTTTCTTC+TGG	0.234225	3_3:+48401331	Msa0455480:CDS
AAGTGCCGGAGCTGGAAGCT+GGG	0.538620	3_3:-48400481	None:intergenic
AAGTGGTTGAGTGAAGAAGA+AGG	0.520777	3_3:-48400593	None:intergenic
AATCCAAAATCACCTAACCT+TGG	0.573568	3_3:-48401709	None:intergenic
AATCCAAGGTTAGGTGATTT+TGG	0.190946	3_3:+48401706	Msa0455480:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTTGAAATCAAAACCAACA+TGG	-	chr3_3:48400679-48400698	None:intergenic	30.0%
TCAAATTCAACACTCAAAAC+AGG	-	chr3_3:48400860-48400879	None:intergenic	30.0%
AAGATTGAGATTCTGTATGT+GGG	+	chr3_3:48400899-48400918	Msa0455480:CDS	30.0%
AGCTTCAACAAATCATGAAT+TGG	+	chr3_3:48400951-48400970	Msa0455480:CDS	30.0%
TCTCTTTCTATGATGATTCT+TGG	-	chr3_3:48401083-48401102	None:intergenic	30.0%
CATAGAAAGAGATTTGTGAT+TGG	+	chr3_3:48401091-48401110	Msa0455480:CDS	30.0%
AGCAGAACAAAGAAAAAACA+TGG	-	chr3_3:48401139-48401158	None:intergenic	30.0%
TCCTAAAGAGTTTGGTTATA+AGG	+	chr3_3:48401237-48401256	Msa0455480:CDS	30.0%
TCCTTATAACCAAACTCTTT+AGG	-	chr3_3:48401241-48401260	None:intergenic	30.0%
ATAATTGGGAATGGTTCATT+TGG	+	chr3_3:48401298-48401317	Msa0455480:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	48400314	48402254	48400314	ID=Msa0455480;Name=Msa0455480
chr3_3	mRNA	48400314	48402254	48400314	ID=Msa0455480-mRNA-1;Parent=Msa0455480;Name=Msa0455480-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|646
chr3_3	exon	48400314	48402254	48400314	ID=Msa0455480-mRNA-1:exon:8977;Parent=Msa0455480-mRNA-1
chr3_3	CDS	48400314	48402254	48400314	ID=Msa0455480-mRNA-1:cds;Parent=Msa0455480-mRNA-1

Gene Sequence

>Msa0455480

ATGTCTCCAACAACCATCATCATCACGCTCCTCTTCTTCCTCATTCCAACCACACTCTCCCAAAACACAACCTTCACCTTTCCTTCTTTCACCCTCCGCAACATCACCCTCCTTGGCGACTCCTTCCTCCGCGGCGGCGGCGTCGGTCTCACACGCTCCACCACCGTCCCAGCTTCCAGCTCCGGCACTTTTCTTTACAACAACCCCATTTCTCTCATACCCAATTCATCTCTCTCTTTTAAAACCAATTTCACTTTCTCTATTACTAACACAAACCCTCCTTCTTCTTCACTCAACCACTTCTCATTCTTCATCAACTCTACCGCTAGTTTCATTTCCCTTGATTTTCACACTAACAATAACCATGTTGGTTTTGATTTCAACAATAGTCAAATCCAAAAAACTGTTGATGATACCATTGTTTTCAATTTCACTAGTGGAAACTTGATTACTTCATGGATTGATTATAATGATTTCAACAAAAACTTGAGTGTTTTCTTAAGCTATGGAAATTTAAGCTTTTCAAGTTCAAAGCCTGAAGAACCTGTTTTGAGTGTTGAATTTGATCTTTCTGAGTATTTCAAGAAGATTGAGATTCTGTATGTGGGGTTTTTGGGTTCTGCTGAAGGAAGTACTGAGCTTCAACAAATCATGAATTGGAGCTTTGAATCTTTTCAGTTTCTACCTATTAATCAAACTGAAAATAAAAATTCAAGCTTTCACCATTTTGGTTATCAAGTTGAGGATATTCCAGCTTCAAACTCAACCAAGAATCATCATAGAAAGAGATTTGTGATTGGTTTATGTGTTGCTATTGTGGGTCCATGTTTTTTCTTTGTTCTGCTATTGGTTTTAGGGTATGTTTCTTTTAGAAAATGGAGTAGTTTAAACAAGCTTAAGAAGAGTAAAAGTTCTATAGGGTGTCCTAAAGAGTTTGGTTATAAGGAATTGAAATTTGCTACAAAAGGGTTTCATGGTTCAAGAATAATTGGGAATGGTTCATTTGGAACAGTTTATAAGGCTTTGCTTGTTTCTTCTGGTACAGTTGCTGCTGTTAAAAGATCAAGACATTCACATGAAGGGAAAACCGAGTTTTTATCCGAGTTGTCGATTATAGCTGGTTTAAGGCACAAGAATTTGGTTCAACTTTTAGGTTGGTGTGTTGAGAAAGGTGAATTGTTGCTTGTGTATGAGTTTATGGTTAATGGTAGTTTAGATAAGTTTCTTCATAGAGAATTATCTCATGAGTGTGATATTTTGTTGAGTTGGGTTCAAAGATTTAACATTGTTGTAGGATTGGCTTCTGTTTTAGCTTATTTGCATCAAGAATGTGAACAAAGAGTGATTCATAGAGATATTAAGACGGCGAATATATTGTTAGATGGAAATTTGAATCCAAGGTTAGGTGATTTTGGATTGGCAAAGCTTATGGATCATGATATGAGTCCGGTTTCAACGTTAACCGCCGGAACAATGGGATACCTAGCTCCTGAGTATCTACAATACGGTAAAGCAACCGATAAGACCGATGTTTTTAGCTTCGGAGTTGTTGTTCTTGAAGTTGCTTGTGGTAGAAGGCCAATTGAGAAAGAGGGTCAAGAGATGGTGAATTTGGTTGATTTTGTTTGGGGACTTTACTCTCAAGGGAAGTTAATTGAGGCTGTTGATAAGAGATTGAATGGTGAATTTGATGAAGTTGAAATGAAGAAGATGTTACTATTAGGGTTGAGTTGTGCAAATCCAAATAGTGATGAAAGGCCTTCAATGAGAAGAGTTTTGCAAATTCTTAACAATGAAGCTTTGCCTCTTGTTGTGCCTAAAGTGAAACCTTGCCTTAGTTTCTCTTCTGGATTGTTATTGAGTCTTGATGAAATTGTTTCTGATTTTGATGAAAGGTTAAGTTCTAATCAATTTAGCAAGATCAAAATTGAACCAAGTTGA

Protein sequence

>Msa0455480

MSPTTIIITLLFFLIPTTLSQNTTFTFPSFTLRNITLLGDSFLRGGGVGLTRSTTVPASSSGTFLYNNPISLIPNSSLSFKTNFTFSITNTNPPSSSLNHFSFFINSTASFISLDFHTNNNHVGFDFNNSQIQKTVDDTIVFNFTSGNLITSWIDYNDFNKNLSVFLSYGNLSFSSSKPEEPVLSVEFDLSEYFKKIEILYVGFLGSAEGSTELQQIMNWSFESFQFLPINQTENKNSSFHHFGYQVEDIPASNSTKNHHRKRFVIGLCVAIVGPCFFFVLLLVLGYVSFRKWSSLNKLKKSKSSIGCPKEFGYKELKFATKGFHGSRIIGNGSFGTVYKALLVSSGTVAAVKRSRHSHEGKTEFLSELSIIAGLRHKNLVQLLGWCVEKGELLLVYEFMVNGSLDKFLHRELSHECDILLSWVQRFNIVVGLASVLAYLHQECEQRVIHRDIKTANILLDGNLNPRLGDFGLAKLMDHDMSPVSTLTAGTMGYLAPEYLQYGKATDKTDVFSFGVVVLEVACGRRPIEKEGQEMVNLVDFVWGLYSQGKLIEAVDKRLNGEFDEVEMKKMLLLGLSCANPNSDERPSMRRVLQILNNEALPLVVPKVKPCLSFSSGLLLSLDEIVSDFDERLSSNQFSKIKIEPS*