Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0461020 | XP_013461810.1 | 83.358 | 679 | 20 | 7 | 1 | 586 | 29 | 707 | 0.0 | 1062 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0461020 | sp|Q5UNY4|YL728_MIMIV | 30.084 | 359 | 197 | 12 | 253 | 570 | 152 | 497 | 4.37e-42 | 162 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0461020 | A0A072VCH4 | 83.358 | 679 | 20 | 7 | 1 | 586 | 29 | 707 | 0.0 | 1062 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0381390 | Msa0461020 | 0.947530 | 5.620562e-106 | -8.615850e-47 |
| Msa0422620 | Msa0461020 | 0.926789 | 2.889763e-91 | -8.615850e-47 |
| Msa0434140 | Msa0461020 | 0.800207 | 1.605784e-48 | -8.615850e-47 |
| Msa0461020 | Msa0519730 | 0.910488 | 1.771207e-82 | -8.615850e-47 |
| Msa0461020 | Msa0622190 | 0.802662 | 5.043692e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0461020 | MtrunA17_Chr3g0135101 | 84.533 | 653 | 22 | 7 | 1 | 586 | 29 | 669 | 0.0 | 1039 |
| Msa0461020 | MtrunA17_Chr5g0419421 | 70.840 | 631 | 125 | 10 | 1 | 586 | 48 | 664 | 0.0 | 854 |
| Msa0461020 | MtrunA17_Chr6g0471681 | 66.880 | 625 | 137 | 11 | 1 | 586 | 71 | 664 | 0.0 | 805 |
| Msa0461020 | MtrunA17_Chr5g0419411 | 72.603 | 438 | 80 | 5 | 180 | 586 | 1 | 429 | 0.0 | 612 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0461020 | AT5G13210.1 | 55.401 | 648 | 217 | 10 | 1 | 586 | 36 | 673 | 0.0 | 690 |
| Msa0461020 | AT5G43400.1 | 53.086 | 648 | 213 | 13 | 1 | 586 | 37 | 655 | 0.0 | 652 |
| Msa0461020 | AT3G24780.1 | 53.783 | 608 | 201 | 9 | 13 | 551 | 107 | 703 | 0.0 | 622 |
| Msa0461020 | AT5G43390.1 | 50.772 | 648 | 225 | 15 | 1 | 586 | 28 | 643 | 0.0 | 600 |
Find 176 sgRNAs with CRISPR-Local
Find 476 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCCTTCCCTTGCTGAATT+TGG | 0.166800 | 3_3:+58799995 | Msa0461020:CDS |
| AAAGAGGTTTGAGAAGTATT+TGG | 0.190204 | 3_3:+58800912 | Msa0461020:CDS |
| TCTGGTAACTTTGTATCTTT+TGG | 0.190868 | 3_3:+58801791 | Msa0461020:three_prime_UTR |
| TCATGACATTATTCGGTCTT+TGG | 0.197358 | 3_3:+58800984 | Msa0461020:CDS |
| GCCTCAGCTTCATGTGATTC+AGG | 0.225556 | 3_3:+58801221 | Msa0461020:CDS |
| AGTCTCCGGAGGAGAGTTTC+GGG | 0.227712 | 3_3:-58799821 | None:intergenic |
| GGAGGTTACAGACAAGTTTA+AGG | 0.239461 | 3_3:-58799877 | None:intergenic |
| GAATCTGCTGAAATTGTTCT+TGG | 0.240842 | 3_3:+58801584 | Msa0461020:CDS |
| TGCTTCCTCATGACATTATT+CGG | 0.263127 | 3_3:+58800977 | Msa0461020:CDS |
| GCTTCTATGCCGCTGCTCTT+TGG | 0.266382 | 3_3:+58799936 | Msa0461020:CDS |
| GCTTTCTGAGTGGCCGGCAC+TGG | 0.266848 | 3_3:-58801534 | None:intergenic |
| AGAAGACGGTAAAGGATTTC+TGG | 0.284365 | 3_3:-58800034 | None:intergenic |
| CATGACATTATTCGGTCTTT+GGG | 0.290932 | 3_3:+58800985 | Msa0461020:CDS |
| CTTTCTGAGTGGCCGGCACT+GGG | 0.294884 | 3_3:-58801533 | None:intergenic |
| CGGTCGACTCTTCATTTGAT+AGG | 0.298971 | 3_3:+58800641 | Msa0461020:CDS |
| CTTGCTGTGTGTGATGTCTC+TGG | 0.301456 | 3_3:+58801093 | Msa0461020:CDS |
| GACATTAGAAGCCAGGGTTT+TGG | 0.301639 | 3_3:-58799975 | None:intergenic |
| AGTTGCCTGAGGTGTTTATT+GGG | 0.305202 | 3_3:+58800803 | Msa0461020:intron |
| GAGTTGCCTGAGGTGTTTAT+TGG | 0.306469 | 3_3:+58800802 | Msa0461020:intron |
| AAGTCTCCGGAGGAGAGTTT+CGG | 0.307135 | 3_3:-58799822 | None:intergenic |
| AAGGGTGGTGAGTGGGTTAT+AGG | 0.313785 | 3_3:-58799858 | None:intergenic |
| AAATTAGTCTTGCTGCAAAA+TGG | 0.342351 | 3_3:+58800611 | Msa0461020:CDS |
| TGGAGATGGTGGAGAGGTGG+CGG | 0.346229 | 3_3:+58801011 | Msa0461020:CDS |
| ATCAAGCATCTGCAAACTCT+TGG | 0.358801 | 3_3:+58801409 | Msa0461020:CDS |
| GCCTTCACGATCGGACTTGC+CGG | 0.365526 | 3_3:-58799915 | None:intergenic |
| AACTTTATAATGAATGAAAA+TGG | 0.369026 | 3_3:+58801831 | Msa0461020:three_prime_UTR |
| AGGAGGCGCATTATGCTTAT+AGG | 0.369882 | 3_3:+58800728 | Msa0461020:CDS |
| GCTATGGAAGCTGCAATTGC+TGG | 0.375178 | 3_3:+58801669 | Msa0461020:CDS |
| TTAGTGTCATTGGTGGGTTT+TGG | 0.376605 | 3_3:-58799718 | None:intergenic |
| GAAGTACCGAAAAGGGGTTT+TGG | 0.380728 | 3_3:-58800252 | None:intergenic |
| GGGTGGAGATGGTGGAGAGG+TGG | 0.389441 | 3_3:+58801008 | Msa0461020:CDS |
| GGAAATTGATCCCTTACAAC+AGG | 0.401888 | 3_3:+58800836 | Msa0461020:CDS |
| ACAATCTTCTTCTCTTTCTT+CGG | 0.408408 | 3_3:-58800457 | None:intergenic |
| GATGTCTCTGGGAGTATGAC+TGG | 0.411259 | 3_3:+58801105 | Msa0461020:CDS |
| GGAGGCGCATTATGCTTATA+GGG | 0.411872 | 3_3:+58800729 | Msa0461020:CDS |
| GTTTGTGAGGAAGATGGATT+GGG | 0.416637 | 3_3:+58801269 | Msa0461020:CDS |
| AATGTCGTTAATCAATATTC+TGG | 0.418649 | 3_3:+58801773 | Msa0461020:three_prime_UTR |
| ACTAGGAAGTATAGAGAGAA+AGG | 0.427301 | 3_3:+58801453 | Msa0461020:CDS |
| CACAACTAGTTTCTGATACT+CGG | 0.428515 | 3_3:-58801694 | None:intergenic |
| AGTTTGTGAGGAAGATGGAT+TGG | 0.430138 | 3_3:+58801268 | Msa0461020:CDS |
| TAATCGTGAAGTACCGAAAA+GGG | 0.430475 | 3_3:-58800259 | None:intergenic |
| TATGGACGTGTGTGTGGCAT+TGG | 0.437885 | 3_3:+58801134 | Msa0461020:CDS |
| ACAGACGCAACCCTGTTGTA+AGG | 0.447450 | 3_3:-58800847 | None:intergenic |
| GAGGGATGAGGCGAGGGCTG+CGG | 0.448398 | 3_3:+58800321 | Msa0461020:CDS |
| GGGCTGCGGCGAGGGCTAAG+AGG | 0.455206 | 3_3:+58800335 | Msa0461020:CDS |
| ACAACTAGTTTCTGATACTC+GGG | 0.457651 | 3_3:-58801693 | None:intergenic |
| TGCTGCAAAATGGTGTCCTT+CGG | 0.458821 | 3_3:+58800621 | Msa0461020:CDS |
| GACAGAGTTTGTGAGGAAGA+TGG | 0.458990 | 3_3:+58801263 | Msa0461020:CDS |
| TATACTTCCTAGTGATTGCT+TGG | 0.460791 | 3_3:-58801443 | None:intergenic |
| TGAGGCGAGGGCTGCGGCGA+GGG | 0.461273 | 3_3:+58800327 | Msa0461020:CDS |
| CTCCGCGGCATCCGTGGTAC+CGG | 0.461336 | 3_3:+58799896 | Msa0461020:CDS |
| CAGGGTTGCGTCTGTGGCCA+TGG | 0.461754 | 3_3:+58800855 | Msa0461020:CDS |
| TATTTGGAGGATGTGAAAGC+GGG | 0.463495 | 3_3:+58800928 | Msa0461020:CDS |
| CACTCAGAAAGCAGTGGCGC+TGG | 0.468283 | 3_3:+58801545 | Msa0461020:CDS |
| GTGTGTGGCATTGGGATTGT+TGG | 0.469061 | 3_3:+58801143 | Msa0461020:CDS |
| TCAAGCATCTGCAAACTCTT+GGG | 0.470390 | 3_3:+58801410 | Msa0461020:CDS |
| GAGGTTACAGACAAGTTTAA+GGG | 0.471004 | 3_3:-58799876 | None:intergenic |
| GAAGACGGTAAAGGATTTCT+GGG | 0.472411 | 3_3:-58800033 | None:intergenic |
| GGTCGACTCTTCATTTGATA+GGG | 0.473332 | 3_3:+58800642 | Msa0461020:CDS |
| CTTCCTCACAAACTCTGTCT+TGG | 0.475579 | 3_3:-58801259 | None:intergenic |
| TTGCTGTGTGTGATGTCTCT+GGG | 0.479823 | 3_3:+58801094 | Msa0461020:CDS |
| GAAAGAGAAGAAGATTGTAT+TGG | 0.481046 | 3_3:+58800462 | Msa0461020:CDS |
| AGGAGGATCAGATGATTAAG+AGG | 0.485373 | 3_3:+58801358 | Msa0461020:intron |
| GAGGTTTGAGAAGTATTTGG+AGG | 0.487381 | 3_3:+58800915 | Msa0461020:CDS |
| GGCTGCGGCGAGGGCTAAGA+GGG | 0.487543 | 3_3:+58800336 | Msa0461020:CDS |
| TCACCAACATTTCTCTCTAC+AGG | 0.488275 | 3_3:+58799752 | Msa0461020:CDS |
| GGGAAGGGACATTAGAAGCC+AGG | 0.492480 | 3_3:-58799982 | None:intergenic |
| AAGTATAGAGAGAAAGGGTA+TGG | 0.494035 | 3_3:+58801459 | Msa0461020:CDS |
| CCTCAGCTTCATGTGATTCA+GGG | 0.494334 | 3_3:+58801222 | Msa0461020:CDS |
| GTATCAGAAACTAGTTGTGC+TGG | 0.495109 | 3_3:+58801698 | Msa0461020:CDS |
| ATAATCGTGAAGTACCGAAA+AGG | 0.495430 | 3_3:-58800260 | None:intergenic |
| CTGAATTGTGTGAGGAACCT+TGG | 0.496491 | 3_3:+58801169 | Msa0461020:CDS |
| ATAGGGTTCGTGATCGTTTG+AGG | 0.496887 | 3_3:+58800746 | Msa0461020:CDS |
| AAAATACTACTGATTACATA+AGG | 0.498557 | 3_3:-58801729 | None:intergenic |
| CTCGATGGCGACCCCAGTGC+CGG | 0.502159 | 3_3:+58801521 | Msa0461020:CDS |
| ATTATGAGAAGAAAGAGAAG+AGG | 0.504648 | 3_3:+58800410 | Msa0461020:CDS |
| AGAGATTGCGGTGAGGGATG+AGG | 0.504746 | 3_3:+58800309 | Msa0461020:CDS |
| GAGTATGACTGGGATCCCTA+TGG | 0.505208 | 3_3:+58801116 | Msa0461020:CDS |
| AAAGCAGTGGCGCTGGTAAG+TGG | 0.507190 | 3_3:+58801552 | Msa0461020:CDS |
| TGCGGTGAGGGATGAGGCGA+GGG | 0.508537 | 3_3:+58800315 | Msa0461020:CDS |
| TTACAACAGGGTTGCGTCTG+TGG | 0.511164 | 3_3:+58800849 | Msa0461020:CDS |
| GGAGTATGAAGGTGTGGAGG+AGG | 0.511393 | 3_3:+58800711 | Msa0461020:CDS |
| GTAATCACCTTCCCTTTCCA+AGG | 0.512812 | 3_3:-58801186 | None:intergenic |
| TTTCTGAATCTTGCGTATGT+TGG | 0.515047 | 3_3:-58800065 | None:intergenic |
| TGTTTATTGGGGCTAATCGA+TGG | 0.515357 | 3_3:+58800815 | Msa0461020:CDS |
| GCCACTGCTTTCTGAGTGGC+CGG | 0.516326 | 3_3:-58801540 | None:intergenic |
| TTTCCTAGGGAGGAGTATGA+AGG | 0.518283 | 3_3:+58800700 | Msa0461020:CDS |
| GAGTGAAGAGATTGCGGTGA+GGG | 0.519795 | 3_3:+58800303 | Msa0461020:CDS |
| ATGACATTATTCGGTCTTTG+GGG | 0.524131 | 3_3:+58800986 | Msa0461020:CDS |
| GAAGGTGATATAAGCCCTCT+AGG | 0.525667 | 3_3:+58801645 | Msa0461020:intron |
| GCAAGATTCAGAAACAAGAA+TGG | 0.525849 | 3_3:+58800074 | Msa0461020:CDS |
| TATAAGCCCTCTAGGAGCTA+TGG | 0.526879 | 3_3:+58801653 | Msa0461020:CDS |
| AATGCCACACACACGTCCAT+AGG | 0.527660 | 3_3:-58801132 | None:intergenic |
| TTTCTGTTAGTGTCATTGGT+GGG | 0.528326 | 3_3:-58799724 | None:intergenic |
| GACATTATTCGGTCTTTGGG+GGG | 0.529268 | 3_3:+58800988 | Msa0461020:CDS |
| CTTCTCTTTATAAAACTCCA+TGG | 0.529872 | 3_3:-58800872 | None:intergenic |
| CTGATTACCAAGCAATCACT+AGG | 0.538407 | 3_3:+58801436 | Msa0461020:CDS |
| TGCTCAAGAAAGGGAAGATG+AGG | 0.538489 | 3_3:+58801064 | Msa0461020:intron |
| ATGAGGCGAGGGCTGCGGCG+AGG | 0.539072 | 3_3:+58800326 | Msa0461020:CDS |
| GGGAAGACTACGATCGCTGC+TGG | 0.539340 | 3_3:+58800949 | Msa0461020:CDS |
| ATGGACGTGTGTGTGGCATT+GGG | 0.541189 | 3_3:+58801135 | Msa0461020:CDS |
| TGTAACCTCCGCGGCATCCG+TGG | 0.543934 | 3_3:+58799890 | Msa0461020:CDS |
| CAAGTTTAAGGGTGGTGAGT+GGG | 0.544099 | 3_3:-58799865 | None:intergenic |
| TGGAAGAAGAAGTCGAGACA+TGG | 0.548748 | 3_3:-58799779 | None:intergenic |
| TACCTTGCAGAAGACGGTAA+AGG | 0.552943 | 3_3:-58800042 | None:intergenic |
| ACACCTTCATACTCCTCCCT+AGG | 0.564028 | 3_3:-58800703 | None:intergenic |
| AACCAAATTCAGCAAGGGAA+GGG | 0.566367 | 3_3:-58799997 | None:intergenic |
| TGACATTATTCGGTCTTTGG+GGG | 0.566528 | 3_3:+58800987 | Msa0461020:CDS |
| TTGGAATCTGAGAGACTCGA+TGG | 0.569037 | 3_3:+58801506 | Msa0461020:CDS |
| GGAGGAGTATGAAGGTGTGG+AGG | 0.569192 | 3_3:+58800708 | Msa0461020:CDS |
| ATGCCACACACACGTCCATA+GGG | 0.569765 | 3_3:-58801131 | None:intergenic |
| ATCCTTTACCGTCTTCTGCA+AGG | 0.570084 | 3_3:+58800040 | Msa0461020:CDS |
| GGGGAGTGTCGGGGACAACA+TGG | 0.570272 | 3_3:-58799799 | None:intergenic |
| TCTCCGGAGGAGAGTTTCGG+GGG | 0.571817 | 3_3:-58799819 | None:intergenic |
| TTGCGGTGAGGGATGAGGCG+AGG | 0.572019 | 3_3:+58800314 | Msa0461020:CDS |
| CCCTGAATCACATGAAGCTG+AGG | 0.572263 | 3_3:-58801222 | None:intergenic |
| GGAGTTACAGTGGACGAGAA+TGG | 0.572730 | 3_3:+58801032 | Msa0461020:CDS |
| TGTGTTGGTGCCGTTGAGGA+AGG | 0.572986 | 3_3:+58800774 | Msa0461020:CDS |
| TGTGTGAGGAACCTTGGAAA+GGG | 0.574082 | 3_3:+58801175 | Msa0461020:CDS |
| GGAAGGGACATTAGAAGCCA+GGG | 0.574195 | 3_3:-58799981 | None:intergenic |
| CAGACGCAACCCTGTTGTAA+GGG | 0.576953 | 3_3:-58800846 | None:intergenic |
| CTAGGAAGTATAGAGAGAAA+GGG | 0.581276 | 3_3:+58801454 | Msa0461020:CDS |
| CAGCTTCCATAGCTCCTAGA+GGG | 0.582415 | 3_3:-58801659 | None:intergenic |
| ACCATGCTAGTTGAAGTCTC+CGG | 0.584289 | 3_3:-58799835 | None:intergenic |
| GTTGCCTGAGGTGTTTATTG+GGG | 0.586855 | 3_3:+58800804 | Msa0461020:intron |
| TAACCAAATTCAGCAAGGGA+AGG | 0.588634 | 3_3:-58799998 | None:intergenic |
| GTATTTGGAGGATGTGAAAG+CGG | 0.588845 | 3_3:+58800927 | Msa0461020:CDS |
| GAAGTAACCAAATTCAGCAA+GGG | 0.590777 | 3_3:-58800002 | None:intergenic |
| TGCCGGTACCACGGATGCCG+CGG | 0.590984 | 3_3:-58799898 | None:intergenic |
| GGTTCGTGATCGTTTGAGGA+AGG | 0.592796 | 3_3:+58800750 | Msa0461020:CDS |
| TCCGGAGACTTCAACTAGCA+TGG | 0.595620 | 3_3:+58799834 | Msa0461020:CDS |
| TGAAGTAACCAAATTCAGCA+AGG | 0.597355 | 3_3:-58800003 | None:intergenic |
| CTCAGCTTCATGTGATTCAG+GGG | 0.597407 | 3_3:+58801223 | Msa0461020:CDS |
| TTTGTGAGGAAGATGGATTG+GGG | 0.599203 | 3_3:+58801270 | Msa0461020:CDS |
| ATGTCTCTGGGAGTATGACT+GGG | 0.602698 | 3_3:+58801106 | Msa0461020:CDS |
| TTTCTGAGTGGCCGGCACTG+GGG | 0.602919 | 3_3:-58801532 | None:intergenic |
| GATCGGACTTGCCGGTACCA+CGG | 0.606070 | 3_3:-58799907 | None:intergenic |
| GAGAGGTGGCGGAGTTACAG+TGG | 0.606406 | 3_3:+58801022 | Msa0461020:CDS |
| CAGCGCCACTGCTTTCTGAG+TGG | 0.606568 | 3_3:-58801544 | None:intergenic |
| ACAAGTTTAAGGGTGGTGAG+TGG | 0.610115 | 3_3:-58799866 | None:intergenic |
| CCATCACCACCCCAAAACCC+TGG | 0.617883 | 3_3:+58799964 | Msa0461020:CDS |
| TTGTGAGGAAGATGGATTGG+GGG | 0.618528 | 3_3:+58801271 | Msa0461020:CDS |
| AGTCCAAGACAGAGTTTGTG+AGG | 0.622585 | 3_3:+58801256 | Msa0461020:CDS |
| TAGGGAGGAGTATGAAGGTG+TGG | 0.624294 | 3_3:+58800705 | Msa0461020:CDS |
| GATATTTGTATTCAGTGACA+TGG | 0.624325 | 3_3:+58801380 | Msa0461020:CDS |
| ATTTGGAGGATGTGAAAGCG+GGG | 0.632099 | 3_3:+58800929 | Msa0461020:CDS |
| TGTTGGTACCTTGCAGAAGA+CGG | 0.632980 | 3_3:-58800048 | None:intergenic |
| GCCGGCCACTCAGAAAGCAG+TGG | 0.634703 | 3_3:+58801539 | Msa0461020:CDS |
| GGAAGAAGAAGTCGAGACAT+GGG | 0.635379 | 3_3:-58799778 | None:intergenic |
| GATCCCTATGGACGTGTGTG+TGG | 0.637269 | 3_3:+58801128 | Msa0461020:CDS |
| TCGTTTGAGGAAGGATGTGT+TGG | 0.639563 | 3_3:+58800759 | Msa0461020:CDS |
| AAATTGTTCTTGGACAATGA+AGG | 0.639905 | 3_3:+58801594 | Msa0461020:CDS |
| AACTCCAAAACCTTCCTCAA+CGG | 0.645488 | 3_3:-58800784 | None:intergenic |
| GTCTCCGGAGGAGAGTTTCG+GGG | 0.647607 | 3_3:-58799820 | None:intergenic |
| TTGCCTGTAGAGAGAAATGT+TGG | 0.651123 | 3_3:-58799755 | None:intergenic |
| AGGATGTGTTGGTGCCGTTG+AGG | 0.652976 | 3_3:+58800770 | Msa0461020:CDS |
| TTGTGTGAGGAACCTTGGAA+AGG | 0.654898 | 3_3:+58801174 | Msa0461020:CDS |
| TCAAATGAAGAGTCGACCGA+AGG | 0.654913 | 3_3:-58800637 | None:intergenic |
| CGGTACCACGGATGCCGCGG+AGG | 0.656528 | 3_3:-58799895 | None:intergenic |
| TGTGTGAGAGTATCGCGAAG+AGG | 0.656916 | 3_3:+58800674 | Msa0461020:CDS |
| AATCGTGAAGTACCGAAAAG+GGG | 0.664349 | 3_3:-58800258 | None:intergenic |
| AAAGACCGAATAATGTCATG+AGG | 0.667681 | 3_3:-58800982 | None:intergenic |
| GTTACAGACAAGTTTAAGGG+TGG | 0.668561 | 3_3:-58799873 | None:intergenic |
| GATGAACACTGATTTCCAGA+AGG | 0.673235 | 3_3:+58801293 | Msa0461020:CDS |
| GTTGGTGTCTGAATTGTGTG+AGG | 0.673906 | 3_3:+58801161 | Msa0461020:CDS |
| TTTGATGAGTGAAGAGATTG+CGG | 0.678619 | 3_3:+58800297 | Msa0461020:CDS |
| TGAGGAACCTTGGAAAGGGA+AGG | 0.678969 | 3_3:+58801179 | Msa0461020:CDS |
| ATGCTAGTTGAAGTCTCCGG+AGG | 0.682629 | 3_3:-58799832 | None:intergenic |
| GCAGCTTCCATAGCTCCTAG+AGG | 0.684535 | 3_3:-58801660 | None:intergenic |
| TCAGCTTCATGTGATTCAGG+GGG | 0.686603 | 3_3:+58801224 | Msa0461020:CDS |
| GAAATTGATCCCTTACAACA+GGG | 0.693077 | 3_3:+58800837 | Msa0461020:CDS |
| ATGGTGAAACCAAAGAGCAG+CGG | 0.699924 | 3_3:-58799945 | None:intergenic |
| CAACTAGTTTCTGATACTCG+GGG | 0.701259 | 3_3:-58801692 | None:intergenic |
| TGAGTGAAGAGATTGCGGTG+AGG | 0.713300 | 3_3:+58800302 | Msa0461020:CDS |
| CTCCGGAGGAGAGTTTCGGG+GGG | 0.715021 | 3_3:-58799818 | None:intergenic |
| AAACTTGTCTGTAACCTCCG+CGG | 0.727247 | 3_3:+58799881 | Msa0461020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTTTATAATGAATGAAAA+TGG | + | chr3_3:58801831-58801850 | Msa0461020:three_prime_UTR | 15.0% |
| !! | AACTTTATAATGAATGAAAA+TGG | + | chr3_3:58801831-58801850 | Msa0461020:three_prime_UTR | 15.0% |
| !!! | TTTGCGATTTTTTTTTCTAT+AGG | - | chr3_3:58800119-58800138 | None:intergenic | 20.0% |
| !! | AAAATTCTATCAAGAACAAT+GGG | + | chr3_3:58800180-58800199 | Msa0461020:intron | 20.0% |
| !!! | ATATTGAGTTTTTGAAATGT+GGG | + | chr3_3:58800578-58800597 | Msa0461020:CDS | 20.0% |
| !!! | AAAATACTACTGATTACATA+AGG | - | chr3_3:58801732-58801751 | None:intergenic | 20.0% |
| !!! | TTTGCGATTTTTTTTTCTAT+AGG | - | chr3_3:58800119-58800138 | None:intergenic | 20.0% |
| !! | AAAATTCTATCAAGAACAAT+GGG | + | chr3_3:58800180-58800199 | Msa0461020:intron | 20.0% |
| !!! | ATATTGAGTTTTTGAAATGT+GGG | + | chr3_3:58800578-58800597 | Msa0461020:CDS | 20.0% |
| !!! | AAAATACTACTGATTACATA+AGG | - | chr3_3:58801732-58801751 | None:intergenic | 20.0% |
| !! | ATATTTTCTGTTAGTGTCAT+TGG | - | chr3_3:58799731-58799750 | None:intergenic | 25.0% |
| !! | AGAATTTTCTTACACCAAAA+CGG | - | chr3_3:58800168-58800187 | None:intergenic | 25.0% |
| ! | GAAAATTCTATCAAGAACAA+TGG | + | chr3_3:58800179-58800198 | Msa0461020:intron | 25.0% |
| !! | TTTGGATTTTCTTAACCAAA+GGG | - | chr3_3:58800237-58800256 | None:intergenic | 25.0% |
| !! | TTTTGGATTTTCTTAACCAA+AGG | - | chr3_3:58800238-58800257 | None:intergenic | 25.0% |
| ! | CATGAAGAAACTTAAAATGA+GGG | - | chr3_3:58800519-58800538 | None:intergenic | 25.0% |
| ! | TCATGAAGAAACTTAAAATG+AGG | - | chr3_3:58800520-58800539 | None:intergenic | 25.0% |
| !!! | GATATTGAGTTTTTGAAATG+TGG | + | chr3_3:58800577-58800596 | Msa0461020:CDS | 25.0% |
| !!! | TTTTGAAGCATGATAAAAAG+AGG | + | chr3_3:58800896-58800915 | Msa0461020:CDS | 25.0% |
| ! | AGATTCCAAAAAACTATTTG+AGG | - | chr3_3:58801495-58801514 | None:intergenic | 25.0% |
| ! | AATGTCGTTAATCAATATTC+TGG | + | chr3_3:58801773-58801792 | Msa0461020:three_prime_UTR | 25.0% |
| !! | ATATTTTCTGTTAGTGTCAT+TGG | - | chr3_3:58799731-58799750 | None:intergenic | 25.0% |
| !! | AGAATTTTCTTACACCAAAA+CGG | - | chr3_3:58800168-58800187 | None:intergenic | 25.0% |
| ! | GAAAATTCTATCAAGAACAA+TGG | + | chr3_3:58800179-58800198 | Msa0461020:intron | 25.0% |
| !! | TTTGGATTTTCTTAACCAAA+GGG | - | chr3_3:58800237-58800256 | None:intergenic | 25.0% |
| !! | TTTTGGATTTTCTTAACCAA+AGG | - | chr3_3:58800238-58800257 | None:intergenic | 25.0% |
| ! | CATGAAGAAACTTAAAATGA+GGG | - | chr3_3:58800519-58800538 | None:intergenic | 25.0% |
| ! | TCATGAAGAAACTTAAAATG+AGG | - | chr3_3:58800520-58800539 | None:intergenic | 25.0% |
| !!! | GATATTGAGTTTTTGAAATG+TGG | + | chr3_3:58800577-58800596 | Msa0461020:CDS | 25.0% |
| !!! | TTTTGAAGCATGATAAAAAG+AGG | + | chr3_3:58800896-58800915 | Msa0461020:CDS | 25.0% |
| ! | AGATTCCAAAAAACTATTTG+AGG | - | chr3_3:58801495-58801514 | None:intergenic | 25.0% |
| ! | AATGTCGTTAATCAATATTC+TGG | + | chr3_3:58801773-58801792 | Msa0461020:three_prime_UTR | 25.0% |
| ! | TCAAAATCAAAAACCCGTTT+TGG | + | chr3_3:58800151-58800170 | Msa0461020:CDS | 30.0% |
| ! | GAATTTTCTTACACCAAAAC+GGG | - | chr3_3:58800167-58800186 | None:intergenic | 30.0% |
| ! | TTGGATTTTCTTAACCAAAG+GGG | - | chr3_3:58800236-58800255 | None:intergenic | 30.0% |
| ATTATGAGAAGAAAGAGAAG+AGG | + | chr3_3:58800410-58800429 | Msa0461020:CDS | 30.0% | |
| ACAATCTTCTTCTCTTTCTT+CGG | - | chr3_3:58800460-58800479 | None:intergenic | 30.0% | |
| GAAAGAGAAGAAGATTGTAT+TGG | + | chr3_3:58800462-58800481 | Msa0461020:CDS | 30.0% | |
| !! | AAATTAGTCTTGCTGCAAAA+TGG | + | chr3_3:58800611-58800630 | Msa0461020:CDS | 30.0% |
| CTTCTCTTTATAAAACTCCA+TGG | - | chr3_3:58800875-58800894 | None:intergenic | 30.0% | |
| !! | AAAGAGGTTTGAGAAGTATT+TGG | + | chr3_3:58800912-58800931 | Msa0461020:CDS | 30.0% |
| GATATTTGTATTCAGTGACA+TGG | + | chr3_3:58801380-58801399 | Msa0461020:CDS | 30.0% | |
| AAATTGTTCTTGGACAATGA+AGG | + | chr3_3:58801594-58801613 | Msa0461020:CDS | 30.0% | |
| ! | TCTGGTAACTTTGTATCTTT+TGG | + | chr3_3:58801791-58801810 | Msa0461020:three_prime_UTR | 30.0% |
| ! | TCAAAATCAAAAACCCGTTT+TGG | + | chr3_3:58800151-58800170 | Msa0461020:CDS | 30.0% |
| ! | GAATTTTCTTACACCAAAAC+GGG | - | chr3_3:58800167-58800186 | None:intergenic | 30.0% |
| ! | TTGGATTTTCTTAACCAAAG+GGG | - | chr3_3:58800236-58800255 | None:intergenic | 30.0% |
| ATTATGAGAAGAAAGAGAAG+AGG | + | chr3_3:58800410-58800429 | Msa0461020:CDS | 30.0% | |
| ACAATCTTCTTCTCTTTCTT+CGG | - | chr3_3:58800460-58800479 | None:intergenic | 30.0% | |
| GAAAGAGAAGAAGATTGTAT+TGG | + | chr3_3:58800462-58800481 | Msa0461020:CDS | 30.0% | |
| !! | AAATTAGTCTTGCTGCAAAA+TGG | + | chr3_3:58800611-58800630 | Msa0461020:CDS | 30.0% |
| CTTCTCTTTATAAAACTCCA+TGG | - | chr3_3:58800875-58800894 | None:intergenic | 30.0% | |
| !! | AAAGAGGTTTGAGAAGTATT+TGG | + | chr3_3:58800912-58800931 | Msa0461020:CDS | 30.0% |
| GATATTTGTATTCAGTGACA+TGG | + | chr3_3:58801380-58801399 | Msa0461020:CDS | 30.0% | |
| AAATTGTTCTTGGACAATGA+AGG | + | chr3_3:58801594-58801613 | Msa0461020:CDS | 30.0% | |
| ! | TCTGGTAACTTTGTATCTTT+TGG | + | chr3_3:58801791-58801810 | Msa0461020:three_prime_UTR | 30.0% |
| !!! | TGGGTTTTGGTTTGTTTGAA+GGG | - | chr3_3:58799708-58799727 | None:intergenic | 35.0% |
| ! | TTTCTGTTAGTGTCATTGGT+GGG | - | chr3_3:58799727-58799746 | None:intergenic | 35.0% |
| !! | TTTTCTGTTAGTGTCATTGG+TGG | - | chr3_3:58799728-58799747 | None:intergenic | 35.0% |
| GAGGTTACAGACAAGTTTAA+GGG | - | chr3_3:58799879-58799898 | None:intergenic | 35.0% | |
| GAAGTAACCAAATTCAGCAA+GGG | - | chr3_3:58800005-58800024 | None:intergenic | 35.0% | |
| TGAAGTAACCAAATTCAGCA+AGG | - | chr3_3:58800006-58800025 | None:intergenic | 35.0% | |
| TTTCTGAATCTTGCGTATGT+TGG | - | chr3_3:58800068-58800087 | None:intergenic | 35.0% | |
| GCAAGATTCAGAAACAAGAA+TGG | + | chr3_3:58800074-58800093 | Msa0461020:CDS | 35.0% | |
| ! | TGGATTTTCTTAACCAAAGG+GGG | - | chr3_3:58800235-58800254 | None:intergenic | 35.0% |
| ! | GAAAATCCAAAACCCCTTTT+CGG | + | chr3_3:58800246-58800265 | Msa0461020:intron | 35.0% |
| !! | TAATCGTGAAGTACCGAAAA+GGG | - | chr3_3:58800262-58800281 | None:intergenic | 35.0% |
| !! | ATAATCGTGAAGTACCGAAA+AGG | - | chr3_3:58800263-58800282 | None:intergenic | 35.0% |
| TTTGATGAGTGAAGAGATTG+CGG | + | chr3_3:58800297-58800316 | Msa0461020:CDS | 35.0% | |
| ! | TGCAGCAAGACTAATTTTTG+TGG | - | chr3_3:58800608-58800627 | None:intergenic | 35.0% |
| GAAATTGATCCCTTACAACA+GGG | + | chr3_3:58800837-58800856 | Msa0461020:CDS | 35.0% | |
| TGCTTCCTCATGACATTATT+CGG | + | chr3_3:58800977-58800996 | Msa0461020:CDS | 35.0% | |
| AAAGACCGAATAATGTCATG+AGG | - | chr3_3:58800985-58801004 | None:intergenic | 35.0% | |
| TCATGACATTATTCGGTCTT+TGG | + | chr3_3:58800984-58801003 | Msa0461020:CDS | 35.0% | |
| CATGACATTATTCGGTCTTT+GGG | + | chr3_3:58800985-58801004 | Msa0461020:CDS | 35.0% | |
| ATGACATTATTCGGTCTTTG+GGG | + | chr3_3:58800986-58801005 | Msa0461020:CDS | 35.0% | |
| !! | TGGATGATTTGCTCAAGAAA+GGG | + | chr3_3:58801055-58801074 | Msa0461020:intron | 35.0% |
| ATATGCGATCAAATACCTTC+TGG | - | chr3_3:58801311-58801330 | None:intergenic | 35.0% | |
| !! | GAAGGTATTTGATCGCATAT+TGG | + | chr3_3:58801311-58801330 | Msa0461020:intron | 35.0% |
| ATATTGGATGTCGCTGTAAA+TGG | + | chr3_3:58801327-58801346 | Msa0461020:intron | 35.0% | |
| TATTGGATGTCGCTGTAAAT+GGG | + | chr3_3:58801328-58801347 | Msa0461020:intron | 35.0% | |
| TATACTTCCTAGTGATTGCT+TGG | - | chr3_3:58801446-58801465 | None:intergenic | 35.0% | |
| ! | ACTAGGAAGTATAGAGAGAA+AGG | + | chr3_3:58801453-58801472 | Msa0461020:CDS | 35.0% |
| ! | CTAGGAAGTATAGAGAGAAA+GGG | + | chr3_3:58801454-58801473 | Msa0461020:CDS | 35.0% |
| AAGTATAGAGAGAAAGGGTA+TGG | + | chr3_3:58801459-58801478 | Msa0461020:CDS | 35.0% | |
| ! | AAAAACTATTTGAGGCACAG+CGG | - | chr3_3:58801487-58801506 | None:intergenic | 35.0% |
| !!! | CTGTGCCTCAAATAGTTTTT+TGG | + | chr3_3:58801487-58801506 | Msa0461020:CDS | 35.0% |
| GAATCTGCTGAAATTGTTCT+TGG | + | chr3_3:58801584-58801603 | Msa0461020:CDS | 35.0% | |
| ! | ACAACTAGTTTCTGATACTC+GGG | - | chr3_3:58801696-58801715 | None:intergenic | 35.0% |
| ! | CACAACTAGTTTCTGATACT+CGG | - | chr3_3:58801697-58801716 | None:intergenic | 35.0% |
| !!! | TGGGTTTTGGTTTGTTTGAA+GGG | - | chr3_3:58799708-58799727 | None:intergenic | 35.0% |
| ! | TTTCTGTTAGTGTCATTGGT+GGG | - | chr3_3:58799727-58799746 | None:intergenic | 35.0% |
| !! | TTTTCTGTTAGTGTCATTGG+TGG | - | chr3_3:58799728-58799747 | None:intergenic | 35.0% |
| GAGGTTACAGACAAGTTTAA+GGG | - | chr3_3:58799879-58799898 | None:intergenic | 35.0% | |
| GAAGTAACCAAATTCAGCAA+GGG | - | chr3_3:58800005-58800024 | None:intergenic | 35.0% | |
| TGAAGTAACCAAATTCAGCA+AGG | - | chr3_3:58800006-58800025 | None:intergenic | 35.0% | |
| TTTCTGAATCTTGCGTATGT+TGG | - | chr3_3:58800068-58800087 | None:intergenic | 35.0% | |
| GCAAGATTCAGAAACAAGAA+TGG | + | chr3_3:58800074-58800093 | Msa0461020:CDS | 35.0% | |
| ! | TGGATTTTCTTAACCAAAGG+GGG | - | chr3_3:58800235-58800254 | None:intergenic | 35.0% |
| ! | GAAAATCCAAAACCCCTTTT+CGG | + | chr3_3:58800246-58800265 | Msa0461020:intron | 35.0% |
| !! | TAATCGTGAAGTACCGAAAA+GGG | - | chr3_3:58800262-58800281 | None:intergenic | 35.0% |
| !! | ATAATCGTGAAGTACCGAAA+AGG | - | chr3_3:58800263-58800282 | None:intergenic | 35.0% |
| TTTGATGAGTGAAGAGATTG+CGG | + | chr3_3:58800297-58800316 | Msa0461020:CDS | 35.0% | |
| ! | TGCAGCAAGACTAATTTTTG+TGG | - | chr3_3:58800608-58800627 | None:intergenic | 35.0% |
| GAAATTGATCCCTTACAACA+GGG | + | chr3_3:58800837-58800856 | Msa0461020:CDS | 35.0% | |
| TGCTTCCTCATGACATTATT+CGG | + | chr3_3:58800977-58800996 | Msa0461020:CDS | 35.0% | |
| AAAGACCGAATAATGTCATG+AGG | - | chr3_3:58800985-58801004 | None:intergenic | 35.0% | |
| TCATGACATTATTCGGTCTT+TGG | + | chr3_3:58800984-58801003 | Msa0461020:CDS | 35.0% | |
| CATGACATTATTCGGTCTTT+GGG | + | chr3_3:58800985-58801004 | Msa0461020:CDS | 35.0% | |
| ATGACATTATTCGGTCTTTG+GGG | + | chr3_3:58800986-58801005 | Msa0461020:CDS | 35.0% | |
| !! | TGGATGATTTGCTCAAGAAA+GGG | + | chr3_3:58801055-58801074 | Msa0461020:intron | 35.0% |
| ATATGCGATCAAATACCTTC+TGG | - | chr3_3:58801311-58801330 | None:intergenic | 35.0% | |
| !! | GAAGGTATTTGATCGCATAT+TGG | + | chr3_3:58801311-58801330 | Msa0461020:intron | 35.0% |
| ATATTGGATGTCGCTGTAAA+TGG | + | chr3_3:58801327-58801346 | Msa0461020:intron | 35.0% | |
| TATTGGATGTCGCTGTAAAT+GGG | + | chr3_3:58801328-58801347 | Msa0461020:intron | 35.0% | |
| TATACTTCCTAGTGATTGCT+TGG | - | chr3_3:58801446-58801465 | None:intergenic | 35.0% | |
| ! | ACTAGGAAGTATAGAGAGAA+AGG | + | chr3_3:58801453-58801472 | Msa0461020:CDS | 35.0% |
| ! | CTAGGAAGTATAGAGAGAAA+GGG | + | chr3_3:58801454-58801473 | Msa0461020:CDS | 35.0% |
| AAGTATAGAGAGAAAGGGTA+TGG | + | chr3_3:58801459-58801478 | Msa0461020:CDS | 35.0% | |
| ! | AAAAACTATTTGAGGCACAG+CGG | - | chr3_3:58801487-58801506 | None:intergenic | 35.0% |
| !!! | CTGTGCCTCAAATAGTTTTT+TGG | + | chr3_3:58801487-58801506 | Msa0461020:CDS | 35.0% |
| GAATCTGCTGAAATTGTTCT+TGG | + | chr3_3:58801584-58801603 | Msa0461020:CDS | 35.0% | |
| ! | ACAACTAGTTTCTGATACTC+GGG | - | chr3_3:58801696-58801715 | None:intergenic | 35.0% |
| ! | CACAACTAGTTTCTGATACT+CGG | - | chr3_3:58801697-58801716 | None:intergenic | 35.0% |
| !!! | GTGGGTTTTGGTTTGTTTGA+AGG | - | chr3_3:58799709-58799728 | None:intergenic | 40.0% |
| !!! | TTAGTGTCATTGGTGGGTTT+TGG | - | chr3_3:58799721-58799740 | None:intergenic | 40.0% |
| TCACCAACATTTCTCTCTAC+AGG | + | chr3_3:58799752-58799771 | Msa0461020:CDS | 40.0% | |
| TTGCCTGTAGAGAGAAATGT+TGG | - | chr3_3:58799758-58799777 | None:intergenic | 40.0% | |
| GTTACAGACAAGTTTAAGGG+TGG | - | chr3_3:58799876-58799895 | None:intergenic | 40.0% | |
| GGAGGTTACAGACAAGTTTA+AGG | - | chr3_3:58799880-58799899 | None:intergenic | 40.0% | |
| ! | ACATTAGAAGCCAGGGTTTT+GGG | - | chr3_3:58799977-58799996 | None:intergenic | 40.0% |
| AACCAAATTCAGCAAGGGAA+GGG | - | chr3_3:58800000-58800019 | None:intergenic | 40.0% | |
| TAACCAAATTCAGCAAGGGA+AGG | - | chr3_3:58800001-58800020 | None:intergenic | 40.0% | |
| GAAGACGGTAAAGGATTTCT+GGG | - | chr3_3:58800036-58800055 | None:intergenic | 40.0% | |
| AGAAGACGGTAAAGGATTTC+TGG | - | chr3_3:58800037-58800056 | None:intergenic | 40.0% | |
| !! | GGTTTAACTTGAACCAAAGG+GGG | - | chr3_3:58800214-58800233 | None:intergenic | 40.0% |
| !! | GGGTTTAACTTGAACCAAAG+GGG | - | chr3_3:58800215-58800234 | None:intergenic | 40.0% |
| !! | GGGGTTTAACTTGAACCAAA+GGG | - | chr3_3:58800216-58800235 | None:intergenic | 40.0% |
| !! | AATCGTGAAGTACCGAAAAG+GGG | - | chr3_3:58800261-58800280 | None:intergenic | 40.0% |
| !! | TGGCTAAGAAGCTTGTTGAA+CGG | + | chr3_3:58800482-58800501 | Msa0461020:intron | 40.0% |
| ! | GGTCGACTCTTCATTTGATA+GGG | + | chr3_3:58800642-58800661 | Msa0461020:CDS | 40.0% |
| AACTCCAAAACCTTCCTCAA+CGG | - | chr3_3:58800787-58800806 | None:intergenic | 40.0% | |
| ! | AGTTGCCTGAGGTGTTTATT+GGG | + | chr3_3:58800803-58800822 | Msa0461020:intron | 40.0% |
| TGTTTATTGGGGCTAATCGA+TGG | + | chr3_3:58800815-58800834 | Msa0461020:CDS | 40.0% | |
| GGAAATTGATCCCTTACAAC+AGG | + | chr3_3:58800836-58800855 | Msa0461020:CDS | 40.0% | |
| !! | GAGGTTTGAGAAGTATTTGG+AGG | + | chr3_3:58800915-58800934 | Msa0461020:CDS | 40.0% |
| GTATTTGGAGGATGTGAAAG+CGG | + | chr3_3:58800927-58800946 | Msa0461020:CDS | 40.0% | |
| TATTTGGAGGATGTGAAAGC+GGG | + | chr3_3:58800928-58800947 | Msa0461020:CDS | 40.0% | |
| TGACATTATTCGGTCTTTGG+GGG | + | chr3_3:58800987-58801006 | Msa0461020:CDS | 40.0% | |
| !! | GTGGATGATTTGCTCAAGAA+AGG | + | chr3_3:58801054-58801073 | Msa0461020:intron | 40.0% |
| AGTTTGTGAGGAAGATGGAT+TGG | + | chr3_3:58801268-58801287 | Msa0461020:CDS | 40.0% | |
| ! | GTTTGTGAGGAAGATGGATT+GGG | + | chr3_3:58801269-58801288 | Msa0461020:CDS | 40.0% |
| !! | TTTGTGAGGAAGATGGATTG+GGG | + | chr3_3:58801270-58801289 | Msa0461020:CDS | 40.0% |
| !! | GATGAACACTGATTTCCAGA+AGG | + | chr3_3:58801293-58801312 | Msa0461020:CDS | 40.0% |
| TGTAAATGGGAATCTCAAGG+AGG | + | chr3_3:58801341-58801360 | Msa0461020:intron | 40.0% | |
| AGGAGGATCAGATGATTAAG+AGG | + | chr3_3:58801358-58801377 | Msa0461020:intron | 40.0% | |
| ATCAAGCATCTGCAAACTCT+TGG | + | chr3_3:58801409-58801428 | Msa0461020:CDS | 40.0% | |
| TCAAGCATCTGCAAACTCTT+GGG | + | chr3_3:58801410-58801429 | Msa0461020:CDS | 40.0% | |
| CTGATTACCAAGCAATCACT+AGG | + | chr3_3:58801436-58801455 | Msa0461020:CDS | 40.0% | |
| ! | CAACTAGTTTCTGATACTCG+GGG | - | chr3_3:58801695-58801714 | None:intergenic | 40.0% |
| GTATCAGAAACTAGTTGTGC+TGG | + | chr3_3:58801698-58801717 | Msa0461020:CDS | 40.0% | |
| !!! | GTGGGTTTTGGTTTGTTTGA+AGG | - | chr3_3:58799709-58799728 | None:intergenic | 40.0% |
| !!! | TTAGTGTCATTGGTGGGTTT+TGG | - | chr3_3:58799721-58799740 | None:intergenic | 40.0% |
| TCACCAACATTTCTCTCTAC+AGG | + | chr3_3:58799752-58799771 | Msa0461020:CDS | 40.0% | |
| TTGCCTGTAGAGAGAAATGT+TGG | - | chr3_3:58799758-58799777 | None:intergenic | 40.0% | |
| GTTACAGACAAGTTTAAGGG+TGG | - | chr3_3:58799876-58799895 | None:intergenic | 40.0% | |
| GGAGGTTACAGACAAGTTTA+AGG | - | chr3_3:58799880-58799899 | None:intergenic | 40.0% | |
| ! | ACATTAGAAGCCAGGGTTTT+GGG | - | chr3_3:58799977-58799996 | None:intergenic | 40.0% |
| AACCAAATTCAGCAAGGGAA+GGG | - | chr3_3:58800000-58800019 | None:intergenic | 40.0% | |
| TAACCAAATTCAGCAAGGGA+AGG | - | chr3_3:58800001-58800020 | None:intergenic | 40.0% | |
| GAAGACGGTAAAGGATTTCT+GGG | - | chr3_3:58800036-58800055 | None:intergenic | 40.0% | |
| AGAAGACGGTAAAGGATTTC+TGG | - | chr3_3:58800037-58800056 | None:intergenic | 40.0% | |
| !! | GGTTTAACTTGAACCAAAGG+GGG | - | chr3_3:58800214-58800233 | None:intergenic | 40.0% |
| !! | GGGTTTAACTTGAACCAAAG+GGG | - | chr3_3:58800215-58800234 | None:intergenic | 40.0% |
| !! | GGGGTTTAACTTGAACCAAA+GGG | - | chr3_3:58800216-58800235 | None:intergenic | 40.0% |
| !! | AATCGTGAAGTACCGAAAAG+GGG | - | chr3_3:58800261-58800280 | None:intergenic | 40.0% |
| !! | TGGCTAAGAAGCTTGTTGAA+CGG | + | chr3_3:58800482-58800501 | Msa0461020:intron | 40.0% |
| ! | GGTCGACTCTTCATTTGATA+GGG | + | chr3_3:58800642-58800661 | Msa0461020:CDS | 40.0% |
| AACTCCAAAACCTTCCTCAA+CGG | - | chr3_3:58800787-58800806 | None:intergenic | 40.0% | |
| ! | AGTTGCCTGAGGTGTTTATT+GGG | + | chr3_3:58800803-58800822 | Msa0461020:intron | 40.0% |
| TGTTTATTGGGGCTAATCGA+TGG | + | chr3_3:58800815-58800834 | Msa0461020:CDS | 40.0% | |
| GGAAATTGATCCCTTACAAC+AGG | + | chr3_3:58800836-58800855 | Msa0461020:CDS | 40.0% | |
| !! | GAGGTTTGAGAAGTATTTGG+AGG | + | chr3_3:58800915-58800934 | Msa0461020:CDS | 40.0% |
| GTATTTGGAGGATGTGAAAG+CGG | + | chr3_3:58800927-58800946 | Msa0461020:CDS | 40.0% | |
| TATTTGGAGGATGTGAAAGC+GGG | + | chr3_3:58800928-58800947 | Msa0461020:CDS | 40.0% | |
| TGACATTATTCGGTCTTTGG+GGG | + | chr3_3:58800987-58801006 | Msa0461020:CDS | 40.0% | |
| !! | GTGGATGATTTGCTCAAGAA+AGG | + | chr3_3:58801054-58801073 | Msa0461020:intron | 40.0% |
| AGTTTGTGAGGAAGATGGAT+TGG | + | chr3_3:58801268-58801287 | Msa0461020:CDS | 40.0% | |
| ! | GTTTGTGAGGAAGATGGATT+GGG | + | chr3_3:58801269-58801288 | Msa0461020:CDS | 40.0% |
| !! | TTTGTGAGGAAGATGGATTG+GGG | + | chr3_3:58801270-58801289 | Msa0461020:CDS | 40.0% |
| !! | GATGAACACTGATTTCCAGA+AGG | + | chr3_3:58801293-58801312 | Msa0461020:CDS | 40.0% |
| TGTAAATGGGAATCTCAAGG+AGG | + | chr3_3:58801341-58801360 | Msa0461020:intron | 40.0% | |
| AGGAGGATCAGATGATTAAG+AGG | + | chr3_3:58801358-58801377 | Msa0461020:intron | 40.0% | |
| ATCAAGCATCTGCAAACTCT+TGG | + | chr3_3:58801409-58801428 | Msa0461020:CDS | 40.0% | |
| TCAAGCATCTGCAAACTCTT+GGG | + | chr3_3:58801410-58801429 | Msa0461020:CDS | 40.0% | |
| CTGATTACCAAGCAATCACT+AGG | + | chr3_3:58801436-58801455 | Msa0461020:CDS | 40.0% | |
| ! | CAACTAGTTTCTGATACTCG+GGG | - | chr3_3:58801695-58801714 | None:intergenic | 40.0% |
| GTATCAGAAACTAGTTGTGC+TGG | + | chr3_3:58801698-58801717 | Msa0461020:CDS | 40.0% | |
| GGAAGAAGAAGTCGAGACAT+GGG | - | chr3_3:58799781-58799800 | None:intergenic | 45.0% | |
| TGGAAGAAGAAGTCGAGACA+TGG | - | chr3_3:58799782-58799801 | None:intergenic | 45.0% | |
| ACCATGCTAGTTGAAGTCTC+CGG | - | chr3_3:58799838-58799857 | None:intergenic | 45.0% | |
| CAAGTTTAAGGGTGGTGAGT+GGG | - | chr3_3:58799868-58799887 | None:intergenic | 45.0% | |
| ACAAGTTTAAGGGTGGTGAG+TGG | - | chr3_3:58799869-58799888 | None:intergenic | 45.0% | |
| AAACTTGTCTGTAACCTCCG+CGG | + | chr3_3:58799881-58799900 | Msa0461020:CDS | 45.0% | |
| ATGGTGAAACCAAAGAGCAG+CGG | - | chr3_3:58799948-58799967 | None:intergenic | 45.0% | |
| ! | CATTAGAAGCCAGGGTTTTG+GGG | - | chr3_3:58799976-58799995 | None:intergenic | 45.0% |
| ! | GACATTAGAAGCCAGGGTTT+TGG | - | chr3_3:58799978-58799997 | None:intergenic | 45.0% |
| ATCCTTTACCGTCTTCTGCA+AGG | + | chr3_3:58800040-58800059 | Msa0461020:CDS | 45.0% | |
| TACCTTGCAGAAGACGGTAA+AGG | - | chr3_3:58800045-58800064 | None:intergenic | 45.0% | |
| TGTTGGTACCTTGCAGAAGA+CGG | - | chr3_3:58800051-58800070 | None:intergenic | 45.0% | |
| ATGGGAGTTTAAACCCCCTT+TGG | + | chr3_3:58800198-58800217 | Msa0461020:intron | 45.0% | |
| !! | GGGGGTTTAACTTGAACCAA+AGG | - | chr3_3:58800217-58800236 | None:intergenic | 45.0% |
| ! | GGTTCAAGTTAAACCCCCTT+TGG | + | chr3_3:58800219-58800238 | Msa0461020:intron | 45.0% |
| !!! | GAAGTACCGAAAAGGGGTTT+TGG | - | chr3_3:58800255-58800274 | None:intergenic | 45.0% |
| TGCTGCAAAATGGTGTCCTT+CGG | + | chr3_3:58800621-58800640 | Msa0461020:CDS | 45.0% | |
| TCAAATGAAGAGTCGACCGA+AGG | - | chr3_3:58800640-58800659 | None:intergenic | 45.0% | |
| ! | CGGTCGACTCTTCATTTGAT+AGG | + | chr3_3:58800641-58800660 | Msa0461020:CDS | 45.0% |
| ! | TCGCGAAGAGGATTTTTCCT+AGG | + | chr3_3:58800686-58800705 | Msa0461020:CDS | 45.0% |
| ! | CGCGAAGAGGATTTTTCCTA+GGG | + | chr3_3:58800687-58800706 | Msa0461020:CDS | 45.0% |
| ! | GAAGAGGATTTTTCCTAGGG+AGG | + | chr3_3:58800690-58800709 | Msa0461020:CDS | 45.0% |
| ! | TTTCCTAGGGAGGAGTATGA+AGG | + | chr3_3:58800700-58800719 | Msa0461020:CDS | 45.0% |
| ! | AGGAGGCGCATTATGCTTAT+AGG | + | chr3_3:58800728-58800747 | Msa0461020:CDS | 45.0% |
| ! | GGAGGCGCATTATGCTTATA+GGG | + | chr3_3:58800729-58800748 | Msa0461020:CDS | 45.0% |
| ATAGGGTTCGTGATCGTTTG+AGG | + | chr3_3:58800746-58800765 | Msa0461020:CDS | 45.0% | |
| TCGTTTGAGGAAGGATGTGT+TGG | + | chr3_3:58800759-58800778 | Msa0461020:CDS | 45.0% | |
| ! | GAGTTGCCTGAGGTGTTTAT+TGG | + | chr3_3:58800802-58800821 | Msa0461020:intron | 45.0% |
| ! | GTTGCCTGAGGTGTTTATTG+GGG | + | chr3_3:58800804-58800823 | Msa0461020:intron | 45.0% |
| TTAGCCCCAATAAACACCTC+AGG | - | chr3_3:58800811-58800830 | None:intergenic | 45.0% | |
| ATTTGGAGGATGTGAAAGCG+GGG | + | chr3_3:58800929-58800948 | Msa0461020:CDS | 45.0% | |
| GACATTATTCGGTCTTTGGG+GGG | + | chr3_3:58800988-58801007 | Msa0461020:CDS | 45.0% | |
| TGCTCAAGAAAGGGAAGATG+AGG | + | chr3_3:58801064-58801083 | Msa0461020:intron | 45.0% | |
| TTGCTGTGTGTGATGTCTCT+GGG | + | chr3_3:58801094-58801113 | Msa0461020:CDS | 45.0% | |
| ! | ATGTCTCTGGGAGTATGACT+GGG | + | chr3_3:58801106-58801125 | Msa0461020:CDS | 45.0% |
| ! | GTTGGTGTCTGAATTGTGTG+AGG | + | chr3_3:58801161-58801180 | Msa0461020:CDS | 45.0% |
| CTGAATTGTGTGAGGAACCT+TGG | + | chr3_3:58801169-58801188 | Msa0461020:CDS | 45.0% | |
| TTGTGTGAGGAACCTTGGAA+AGG | + | chr3_3:58801174-58801193 | Msa0461020:CDS | 45.0% | |
| TGTGTGAGGAACCTTGGAAA+GGG | + | chr3_3:58801175-58801194 | Msa0461020:CDS | 45.0% | |
| GTAATCACCTTCCCTTTCCA+AGG | - | chr3_3:58801189-58801208 | None:intergenic | 45.0% | |
| CCTCAGCTTCATGTGATTCA+GGG | + | chr3_3:58801222-58801241 | Msa0461020:CDS | 45.0% | |
| CTCAGCTTCATGTGATTCAG+GGG | + | chr3_3:58801223-58801242 | Msa0461020:CDS | 45.0% | |
| TCAGCTTCATGTGATTCAGG+GGG | + | chr3_3:58801224-58801243 | Msa0461020:CDS | 45.0% | |
| AGTCCAAGACAGAGTTTGTG+AGG | + | chr3_3:58801256-58801275 | Msa0461020:CDS | 45.0% | |
| CTTCCTCACAAACTCTGTCT+TGG | - | chr3_3:58801262-58801281 | None:intergenic | 45.0% | |
| GACAGAGTTTGTGAGGAAGA+TGG | + | chr3_3:58801263-58801282 | Msa0461020:CDS | 45.0% | |
| !! | TTGTGAGGAAGATGGATTGG+GGG | + | chr3_3:58801271-58801290 | Msa0461020:CDS | 45.0% |
| CGCTGTAAATGGGAATCTCA+AGG | + | chr3_3:58801338-58801357 | Msa0461020:intron | 45.0% | |
| TTGGAATCTGAGAGACTCGA+TGG | + | chr3_3:58801506-58801525 | Msa0461020:CDS | 45.0% | |
| CTTCATTGTCTGTCAGCAGA+TGG | - | chr3_3:58801629-58801648 | None:intergenic | 45.0% | |
| CATCTGCTGACAGACAATGA+AGG | + | chr3_3:58801627-58801646 | Msa0461020:intron | 45.0% | |
| GAAGGTGATATAAGCCCTCT+AGG | + | chr3_3:58801645-58801664 | Msa0461020:intron | 45.0% | |
| ! | TATAAGCCCTCTAGGAGCTA+TGG | + | chr3_3:58801653-58801672 | Msa0461020:CDS | 45.0% |
| GGAAGAAGAAGTCGAGACAT+GGG | - | chr3_3:58799781-58799800 | None:intergenic | 45.0% | |
| TGGAAGAAGAAGTCGAGACA+TGG | - | chr3_3:58799782-58799801 | None:intergenic | 45.0% | |
| ACCATGCTAGTTGAAGTCTC+CGG | - | chr3_3:58799838-58799857 | None:intergenic | 45.0% | |
| CAAGTTTAAGGGTGGTGAGT+GGG | - | chr3_3:58799868-58799887 | None:intergenic | 45.0% | |
| ACAAGTTTAAGGGTGGTGAG+TGG | - | chr3_3:58799869-58799888 | None:intergenic | 45.0% | |
| AAACTTGTCTGTAACCTCCG+CGG | + | chr3_3:58799881-58799900 | Msa0461020:CDS | 45.0% | |
| ATGGTGAAACCAAAGAGCAG+CGG | - | chr3_3:58799948-58799967 | None:intergenic | 45.0% | |
| ! | CATTAGAAGCCAGGGTTTTG+GGG | - | chr3_3:58799976-58799995 | None:intergenic | 45.0% |
| ! | GACATTAGAAGCCAGGGTTT+TGG | - | chr3_3:58799978-58799997 | None:intergenic | 45.0% |
| ATCCTTTACCGTCTTCTGCA+AGG | + | chr3_3:58800040-58800059 | Msa0461020:CDS | 45.0% | |
| TACCTTGCAGAAGACGGTAA+AGG | - | chr3_3:58800045-58800064 | None:intergenic | 45.0% | |
| TGTTGGTACCTTGCAGAAGA+CGG | - | chr3_3:58800051-58800070 | None:intergenic | 45.0% | |
| ATGGGAGTTTAAACCCCCTT+TGG | + | chr3_3:58800198-58800217 | Msa0461020:intron | 45.0% | |
| !! | GGGGGTTTAACTTGAACCAA+AGG | - | chr3_3:58800217-58800236 | None:intergenic | 45.0% |
| ! | GGTTCAAGTTAAACCCCCTT+TGG | + | chr3_3:58800219-58800238 | Msa0461020:intron | 45.0% |
| !!! | GAAGTACCGAAAAGGGGTTT+TGG | - | chr3_3:58800255-58800274 | None:intergenic | 45.0% |
| TGCTGCAAAATGGTGTCCTT+CGG | + | chr3_3:58800621-58800640 | Msa0461020:CDS | 45.0% | |
| TCAAATGAAGAGTCGACCGA+AGG | - | chr3_3:58800640-58800659 | None:intergenic | 45.0% | |
| ! | CGGTCGACTCTTCATTTGAT+AGG | + | chr3_3:58800641-58800660 | Msa0461020:CDS | 45.0% |
| ! | TCGCGAAGAGGATTTTTCCT+AGG | + | chr3_3:58800686-58800705 | Msa0461020:CDS | 45.0% |
| ! | CGCGAAGAGGATTTTTCCTA+GGG | + | chr3_3:58800687-58800706 | Msa0461020:CDS | 45.0% |
| ! | GAAGAGGATTTTTCCTAGGG+AGG | + | chr3_3:58800690-58800709 | Msa0461020:CDS | 45.0% |
| ! | TTTCCTAGGGAGGAGTATGA+AGG | + | chr3_3:58800700-58800719 | Msa0461020:CDS | 45.0% |
| ! | AGGAGGCGCATTATGCTTAT+AGG | + | chr3_3:58800728-58800747 | Msa0461020:CDS | 45.0% |
| ! | GGAGGCGCATTATGCTTATA+GGG | + | chr3_3:58800729-58800748 | Msa0461020:CDS | 45.0% |
| ATAGGGTTCGTGATCGTTTG+AGG | + | chr3_3:58800746-58800765 | Msa0461020:CDS | 45.0% | |
| TCGTTTGAGGAAGGATGTGT+TGG | + | chr3_3:58800759-58800778 | Msa0461020:CDS | 45.0% | |
| ! | GAGTTGCCTGAGGTGTTTAT+TGG | + | chr3_3:58800802-58800821 | Msa0461020:intron | 45.0% |
| ! | GTTGCCTGAGGTGTTTATTG+GGG | + | chr3_3:58800804-58800823 | Msa0461020:intron | 45.0% |
| TTAGCCCCAATAAACACCTC+AGG | - | chr3_3:58800811-58800830 | None:intergenic | 45.0% | |
| ATTTGGAGGATGTGAAAGCG+GGG | + | chr3_3:58800929-58800948 | Msa0461020:CDS | 45.0% | |
| GACATTATTCGGTCTTTGGG+GGG | + | chr3_3:58800988-58801007 | Msa0461020:CDS | 45.0% | |
| TGCTCAAGAAAGGGAAGATG+AGG | + | chr3_3:58801064-58801083 | Msa0461020:intron | 45.0% | |
| TTGCTGTGTGTGATGTCTCT+GGG | + | chr3_3:58801094-58801113 | Msa0461020:CDS | 45.0% | |
| ! | ATGTCTCTGGGAGTATGACT+GGG | + | chr3_3:58801106-58801125 | Msa0461020:CDS | 45.0% |
| ! | GTTGGTGTCTGAATTGTGTG+AGG | + | chr3_3:58801161-58801180 | Msa0461020:CDS | 45.0% |
| CTGAATTGTGTGAGGAACCT+TGG | + | chr3_3:58801169-58801188 | Msa0461020:CDS | 45.0% | |
| TTGTGTGAGGAACCTTGGAA+AGG | + | chr3_3:58801174-58801193 | Msa0461020:CDS | 45.0% | |
| TGTGTGAGGAACCTTGGAAA+GGG | + | chr3_3:58801175-58801194 | Msa0461020:CDS | 45.0% | |
| GTAATCACCTTCCCTTTCCA+AGG | - | chr3_3:58801189-58801208 | None:intergenic | 45.0% | |
| CCTCAGCTTCATGTGATTCA+GGG | + | chr3_3:58801222-58801241 | Msa0461020:CDS | 45.0% | |
| CTCAGCTTCATGTGATTCAG+GGG | + | chr3_3:58801223-58801242 | Msa0461020:CDS | 45.0% | |
| TCAGCTTCATGTGATTCAGG+GGG | + | chr3_3:58801224-58801243 | Msa0461020:CDS | 45.0% | |
| AGTCCAAGACAGAGTTTGTG+AGG | + | chr3_3:58801256-58801275 | Msa0461020:CDS | 45.0% | |
| CTTCCTCACAAACTCTGTCT+TGG | - | chr3_3:58801262-58801281 | None:intergenic | 45.0% | |
| GACAGAGTTTGTGAGGAAGA+TGG | + | chr3_3:58801263-58801282 | Msa0461020:CDS | 45.0% | |
| !! | TTGTGAGGAAGATGGATTGG+GGG | + | chr3_3:58801271-58801290 | Msa0461020:CDS | 45.0% |
| CGCTGTAAATGGGAATCTCA+AGG | + | chr3_3:58801338-58801357 | Msa0461020:intron | 45.0% | |
| TTGGAATCTGAGAGACTCGA+TGG | + | chr3_3:58801506-58801525 | Msa0461020:CDS | 45.0% | |
| CTTCATTGTCTGTCAGCAGA+TGG | - | chr3_3:58801629-58801648 | None:intergenic | 45.0% | |
| CATCTGCTGACAGACAATGA+AGG | + | chr3_3:58801627-58801646 | Msa0461020:intron | 45.0% | |
| GAAGGTGATATAAGCCCTCT+AGG | + | chr3_3:58801645-58801664 | Msa0461020:intron | 45.0% | |
| ! | TATAAGCCCTCTAGGAGCTA+TGG | + | chr3_3:58801653-58801672 | Msa0461020:CDS | 45.0% |
| AAGTCTCCGGAGGAGAGTTT+CGG | - | chr3_3:58799825-58799844 | None:intergenic | 50.0% | |
| ATGCTAGTTGAAGTCTCCGG+AGG | - | chr3_3:58799835-58799854 | None:intergenic | 50.0% | |
| TCCGGAGACTTCAACTAGCA+TGG | + | chr3_3:58799834-58799853 | Msa0461020:CDS | 50.0% | |
| !! | AAGGGTGGTGAGTGGGTTAT+AGG | - | chr3_3:58799861-58799880 | None:intergenic | 50.0% |
| GGCATAGAAGCCTTCACGAT+CGG | - | chr3_3:58799927-58799946 | None:intergenic | 50.0% | |
| GGAAGGGACATTAGAAGCCA+GGG | - | chr3_3:58799984-58800003 | None:intergenic | 50.0% | |
| GTCCCTTCCCTTGCTGAATT+TGG | + | chr3_3:58799995-58800014 | Msa0461020:CDS | 50.0% | |
| TGAGTGAAGAGATTGCGGTG+AGG | + | chr3_3:58800302-58800321 | Msa0461020:CDS | 50.0% | |
| GAGTGAAGAGATTGCGGTGA+GGG | + | chr3_3:58800303-58800322 | Msa0461020:CDS | 50.0% | |
| !! | TGTGTGAGAGTATCGCGAAG+AGG | + | chr3_3:58800674-58800693 | Msa0461020:CDS | 50.0% |
| ACACCTTCATACTCCTCCCT+AGG | - | chr3_3:58800706-58800725 | None:intergenic | 50.0% | |
| ! | TAGGGAGGAGTATGAAGGTG+TGG | + | chr3_3:58800705-58800724 | Msa0461020:CDS | 50.0% |
| GGTTCGTGATCGTTTGAGGA+AGG | + | chr3_3:58800750-58800769 | Msa0461020:CDS | 50.0% | |
| !!! | GAAGGTTTTGGAGTTGCCTG+AGG | + | chr3_3:58800792-58800811 | Msa0461020:intron | 50.0% |
| CAGACGCAACCCTGTTGTAA+GGG | - | chr3_3:58800849-58800868 | None:intergenic | 50.0% | |
| ACAGACGCAACCCTGTTGTA+AGG | - | chr3_3:58800850-58800869 | None:intergenic | 50.0% | |
| TTACAACAGGGTTGCGTCTG+TGG | + | chr3_3:58800849-58800868 | Msa0461020:CDS | 50.0% | |
| ! | ATTATTCGGTCTTTGGGGGG+TGG | + | chr3_3:58800991-58801010 | Msa0461020:CDS | 50.0% |
| GGAGTTACAGTGGACGAGAA+TGG | + | chr3_3:58801032-58801051 | Msa0461020:CDS | 50.0% | |
| GTTACAGTGGACGAGAATGG+TGG | + | chr3_3:58801035-58801054 | Msa0461020:intron | 50.0% | |
| ! | CTTGCTGTGTGTGATGTCTC+TGG | + | chr3_3:58801093-58801112 | Msa0461020:CDS | 50.0% |
| ! | GATGTCTCTGGGAGTATGAC+TGG | + | chr3_3:58801105-58801124 | Msa0461020:CDS | 50.0% |
| GAGTATGACTGGGATCCCTA+TGG | + | chr3_3:58801116-58801135 | Msa0461020:CDS | 50.0% | |
| ATGCCACACACACGTCCATA+GGG | - | chr3_3:58801134-58801153 | None:intergenic | 50.0% | |
| AATGCCACACACACGTCCAT+AGG | - | chr3_3:58801135-58801154 | None:intergenic | 50.0% | |
| TATGGACGTGTGTGTGGCAT+TGG | + | chr3_3:58801134-58801153 | Msa0461020:CDS | 50.0% | |
| ATGGACGTGTGTGTGGCATT+GGG | + | chr3_3:58801135-58801154 | Msa0461020:CDS | 50.0% | |
| ! | GTGTGTGGCATTGGGATTGT+TGG | + | chr3_3:58801143-58801162 | Msa0461020:CDS | 50.0% |
| TGAGGAACCTTGGAAAGGGA+AGG | + | chr3_3:58801179-58801198 | Msa0461020:CDS | 50.0% | |
| GCCTCAGCTTCATGTGATTC+AGG | + | chr3_3:58801221-58801240 | Msa0461020:CDS | 50.0% | |
| CCCTGAATCACATGAAGCTG+AGG | - | chr3_3:58801225-58801244 | None:intergenic | 50.0% | |
| CAGCTTCCATAGCTCCTAGA+GGG | - | chr3_3:58801662-58801681 | None:intergenic | 50.0% | |
| GCTATGGAAGCTGCAATTGC+TGG | + | chr3_3:58801669-58801688 | Msa0461020:CDS | 50.0% | |
| AAGTCTCCGGAGGAGAGTTT+CGG | - | chr3_3:58799825-58799844 | None:intergenic | 50.0% | |
| ATGCTAGTTGAAGTCTCCGG+AGG | - | chr3_3:58799835-58799854 | None:intergenic | 50.0% | |
| TCCGGAGACTTCAACTAGCA+TGG | + | chr3_3:58799834-58799853 | Msa0461020:CDS | 50.0% | |
| !! | AAGGGTGGTGAGTGGGTTAT+AGG | - | chr3_3:58799861-58799880 | None:intergenic | 50.0% |
| GGCATAGAAGCCTTCACGAT+CGG | - | chr3_3:58799927-58799946 | None:intergenic | 50.0% | |
| GGAAGGGACATTAGAAGCCA+GGG | - | chr3_3:58799984-58800003 | None:intergenic | 50.0% | |
| GTCCCTTCCCTTGCTGAATT+TGG | + | chr3_3:58799995-58800014 | Msa0461020:CDS | 50.0% | |
| TGAGTGAAGAGATTGCGGTG+AGG | + | chr3_3:58800302-58800321 | Msa0461020:CDS | 50.0% | |
| GAGTGAAGAGATTGCGGTGA+GGG | + | chr3_3:58800303-58800322 | Msa0461020:CDS | 50.0% | |
| !! | TGTGTGAGAGTATCGCGAAG+AGG | + | chr3_3:58800674-58800693 | Msa0461020:CDS | 50.0% |
| ACACCTTCATACTCCTCCCT+AGG | - | chr3_3:58800706-58800725 | None:intergenic | 50.0% | |
| ! | TAGGGAGGAGTATGAAGGTG+TGG | + | chr3_3:58800705-58800724 | Msa0461020:CDS | 50.0% |
| GGTTCGTGATCGTTTGAGGA+AGG | + | chr3_3:58800750-58800769 | Msa0461020:CDS | 50.0% | |
| !!! | GAAGGTTTTGGAGTTGCCTG+AGG | + | chr3_3:58800792-58800811 | Msa0461020:intron | 50.0% |
| CAGACGCAACCCTGTTGTAA+GGG | - | chr3_3:58800849-58800868 | None:intergenic | 50.0% | |
| ACAGACGCAACCCTGTTGTA+AGG | - | chr3_3:58800850-58800869 | None:intergenic | 50.0% | |
| TTACAACAGGGTTGCGTCTG+TGG | + | chr3_3:58800849-58800868 | Msa0461020:CDS | 50.0% | |
| ! | ATTATTCGGTCTTTGGGGGG+TGG | + | chr3_3:58800991-58801010 | Msa0461020:CDS | 50.0% |
| GGAGTTACAGTGGACGAGAA+TGG | + | chr3_3:58801032-58801051 | Msa0461020:CDS | 50.0% | |
| GTTACAGTGGACGAGAATGG+TGG | + | chr3_3:58801035-58801054 | Msa0461020:intron | 50.0% | |
| ! | CTTGCTGTGTGTGATGTCTC+TGG | + | chr3_3:58801093-58801112 | Msa0461020:CDS | 50.0% |
| ! | GATGTCTCTGGGAGTATGAC+TGG | + | chr3_3:58801105-58801124 | Msa0461020:CDS | 50.0% |
| GAGTATGACTGGGATCCCTA+TGG | + | chr3_3:58801116-58801135 | Msa0461020:CDS | 50.0% | |
| ATGCCACACACACGTCCATA+GGG | - | chr3_3:58801134-58801153 | None:intergenic | 50.0% | |
| AATGCCACACACACGTCCAT+AGG | - | chr3_3:58801135-58801154 | None:intergenic | 50.0% | |
| TATGGACGTGTGTGTGGCAT+TGG | + | chr3_3:58801134-58801153 | Msa0461020:CDS | 50.0% | |
| ATGGACGTGTGTGTGGCATT+GGG | + | chr3_3:58801135-58801154 | Msa0461020:CDS | 50.0% | |
| ! | GTGTGTGGCATTGGGATTGT+TGG | + | chr3_3:58801143-58801162 | Msa0461020:CDS | 50.0% |
| TGAGGAACCTTGGAAAGGGA+AGG | + | chr3_3:58801179-58801198 | Msa0461020:CDS | 50.0% | |
| GCCTCAGCTTCATGTGATTC+AGG | + | chr3_3:58801221-58801240 | Msa0461020:CDS | 50.0% | |
| CCCTGAATCACATGAAGCTG+AGG | - | chr3_3:58801225-58801244 | None:intergenic | 50.0% | |
| CAGCTTCCATAGCTCCTAGA+GGG | - | chr3_3:58801662-58801681 | None:intergenic | 50.0% | |
| GCTATGGAAGCTGCAATTGC+TGG | + | chr3_3:58801669-58801688 | Msa0461020:CDS | 50.0% | |
| AGTCTCCGGAGGAGAGTTTC+GGG | - | chr3_3:58799824-58799843 | None:intergenic | 55.0% | |
| GCTTCTATGCCGCTGCTCTT+TGG | + | chr3_3:58799936-58799955 | Msa0461020:CDS | 55.0% | |
| !!! | TAGAAGCCAGGGTTTTGGGG+TGG | - | chr3_3:58799973-58799992 | None:intergenic | 55.0% |
| GGGAAGGGACATTAGAAGCC+AGG | - | chr3_3:58799985-58800004 | None:intergenic | 55.0% | |
| AGAGATTGCGGTGAGGGATG+AGG | + | chr3_3:58800309-58800328 | Msa0461020:CDS | 55.0% | |
| ! | GGAGGAGTATGAAGGTGTGG+AGG | + | chr3_3:58800708-58800727 | Msa0461020:CDS | 55.0% |
| ! | GGAGTATGAAGGTGTGGAGG+AGG | + | chr3_3:58800711-58800730 | Msa0461020:CDS | 55.0% |
| !! | AGGATGTGTTGGTGCCGTTG+AGG | + | chr3_3:58800770-58800789 | Msa0461020:CDS | 55.0% |
| !! | TGTGTTGGTGCCGTTGAGGA+AGG | + | chr3_3:58800774-58800793 | Msa0461020:CDS | 55.0% |
| !!! | GGTGCCGTTGAGGAAGGTTT+TGG | + | chr3_3:58800780-58800799 | Msa0461020:intron | 55.0% |
| GATCCCTATGGACGTGTGTG+TGG | + | chr3_3:58801128-58801147 | Msa0461020:CDS | 55.0% | |
| !! | AAAGCAGTGGCGCTGGTAAG+TGG | + | chr3_3:58801552-58801571 | Msa0461020:CDS | 55.0% |
| GCAGCTTCCATAGCTCCTAG+AGG | - | chr3_3:58801663-58801682 | None:intergenic | 55.0% | |
| AGTCTCCGGAGGAGAGTTTC+GGG | - | chr3_3:58799824-58799843 | None:intergenic | 55.0% | |
| GCTTCTATGCCGCTGCTCTT+TGG | + | chr3_3:58799936-58799955 | Msa0461020:CDS | 55.0% | |
| !!! | TAGAAGCCAGGGTTTTGGGG+TGG | - | chr3_3:58799973-58799992 | None:intergenic | 55.0% |
| GGGAAGGGACATTAGAAGCC+AGG | - | chr3_3:58799985-58800004 | None:intergenic | 55.0% | |
| AGAGATTGCGGTGAGGGATG+AGG | + | chr3_3:58800309-58800328 | Msa0461020:CDS | 55.0% | |
| ! | GGAGGAGTATGAAGGTGTGG+AGG | + | chr3_3:58800708-58800727 | Msa0461020:CDS | 55.0% |
| ! | GGAGTATGAAGGTGTGGAGG+AGG | + | chr3_3:58800711-58800730 | Msa0461020:CDS | 55.0% |
| !! | AGGATGTGTTGGTGCCGTTG+AGG | + | chr3_3:58800770-58800789 | Msa0461020:CDS | 55.0% |
| !! | TGTGTTGGTGCCGTTGAGGA+AGG | + | chr3_3:58800774-58800793 | Msa0461020:CDS | 55.0% |
| !!! | GGTGCCGTTGAGGAAGGTTT+TGG | + | chr3_3:58800780-58800799 | Msa0461020:intron | 55.0% |
| GATCCCTATGGACGTGTGTG+TGG | + | chr3_3:58801128-58801147 | Msa0461020:CDS | 55.0% | |
| !! | AAAGCAGTGGCGCTGGTAAG+TGG | + | chr3_3:58801552-58801571 | Msa0461020:CDS | 55.0% |
| GCAGCTTCCATAGCTCCTAG+AGG | - | chr3_3:58801663-58801682 | None:intergenic | 55.0% | |
| !! | AGAGTTTCGGGGGGAGTGTC+GGG | - | chr3_3:58799812-58799831 | None:intergenic | 60.0% |
| ! | GAGAGTTTCGGGGGGAGTGT+CGG | - | chr3_3:58799813-58799832 | None:intergenic | 60.0% |
| TCTCCGGAGGAGAGTTTCGG+GGG | - | chr3_3:58799822-58799841 | None:intergenic | 60.0% | |
| GTCTCCGGAGGAGAGTTTCG+GGG | - | chr3_3:58799823-58799842 | None:intergenic | 60.0% | |
| GATCGGACTTGCCGGTACCA+CGG | - | chr3_3:58799910-58799929 | None:intergenic | 60.0% | |
| ACCGGCAAGTCCGATCGTGA+AGG | + | chr3_3:58799914-58799933 | Msa0461020:intron | 60.0% | |
| GCCTTCACGATCGGACTTGC+CGG | - | chr3_3:58799918-58799937 | None:intergenic | 60.0% | |
| !!! | CCAGGGTTTTGGGGTGGTGA+TGG | - | chr3_3:58799967-58799986 | None:intergenic | 60.0% |
| CCATCACCACCCCAAAACCC+TGG | + | chr3_3:58799964-58799983 | Msa0461020:CDS | 60.0% | |
| GGGAAGACTACGATCGCTGC+TGG | + | chr3_3:58800949-58800968 | Msa0461020:CDS | 60.0% | |
| ! | TCTTTGGGGGGTGGAGATGG+TGG | + | chr3_3:58801000-58801019 | Msa0461020:CDS | 60.0% |
| !! | TGGAGATGGTGGAGAGGTGG+CGG | + | chr3_3:58801011-58801030 | Msa0461020:CDS | 60.0% |
| !! | GAGAGGTGGCGGAGTTACAG+TGG | + | chr3_3:58801022-58801041 | Msa0461020:CDS | 60.0% |
| TTTCTGAGTGGCCGGCACTG+GGG | - | chr3_3:58801535-58801554 | None:intergenic | 60.0% | |
| CTTTCTGAGTGGCCGGCACT+GGG | - | chr3_3:58801536-58801555 | None:intergenic | 60.0% | |
| GCCACTGCTTTCTGAGTGGC+CGG | - | chr3_3:58801543-58801562 | None:intergenic | 60.0% | |
| CAGCGCCACTGCTTTCTGAG+TGG | - | chr3_3:58801547-58801566 | None:intergenic | 60.0% | |
| CACTCAGAAAGCAGTGGCGC+TGG | + | chr3_3:58801545-58801564 | Msa0461020:CDS | 60.0% | |
| !! | AGAGTTTCGGGGGGAGTGTC+GGG | - | chr3_3:58799812-58799831 | None:intergenic | 60.0% |
| ! | GAGAGTTTCGGGGGGAGTGT+CGG | - | chr3_3:58799813-58799832 | None:intergenic | 60.0% |
| TCTCCGGAGGAGAGTTTCGG+GGG | - | chr3_3:58799822-58799841 | None:intergenic | 60.0% | |
| GTCTCCGGAGGAGAGTTTCG+GGG | - | chr3_3:58799823-58799842 | None:intergenic | 60.0% | |
| GATCGGACTTGCCGGTACCA+CGG | - | chr3_3:58799910-58799929 | None:intergenic | 60.0% | |
| ACCGGCAAGTCCGATCGTGA+AGG | + | chr3_3:58799914-58799933 | Msa0461020:intron | 60.0% | |
| GCCTTCACGATCGGACTTGC+CGG | - | chr3_3:58799918-58799937 | None:intergenic | 60.0% | |
| !!! | CCAGGGTTTTGGGGTGGTGA+TGG | - | chr3_3:58799967-58799986 | None:intergenic | 60.0% |
| CCATCACCACCCCAAAACCC+TGG | + | chr3_3:58799964-58799983 | Msa0461020:CDS | 60.0% | |
| GGGAAGACTACGATCGCTGC+TGG | + | chr3_3:58800949-58800968 | Msa0461020:CDS | 60.0% | |
| ! | TCTTTGGGGGGTGGAGATGG+TGG | + | chr3_3:58801000-58801019 | Msa0461020:CDS | 60.0% |
| !! | TGGAGATGGTGGAGAGGTGG+CGG | + | chr3_3:58801011-58801030 | Msa0461020:CDS | 60.0% |
| !! | GAGAGGTGGCGGAGTTACAG+TGG | + | chr3_3:58801022-58801041 | Msa0461020:CDS | 60.0% |
| TTTCTGAGTGGCCGGCACTG+GGG | - | chr3_3:58801535-58801554 | None:intergenic | 60.0% | |
| CTTTCTGAGTGGCCGGCACT+GGG | - | chr3_3:58801536-58801555 | None:intergenic | 60.0% | |
| GCCACTGCTTTCTGAGTGGC+CGG | - | chr3_3:58801543-58801562 | None:intergenic | 60.0% | |
| CAGCGCCACTGCTTTCTGAG+TGG | - | chr3_3:58801547-58801566 | None:intergenic | 60.0% | |
| CACTCAGAAAGCAGTGGCGC+TGG | + | chr3_3:58801545-58801564 | Msa0461020:CDS | 60.0% | |
| !! | GGGGAGTGTCGGGGACAACA+TGG | - | chr3_3:58799802-58799821 | None:intergenic | 65.0% |
| !! | GAGTTTCGGGGGGAGTGTCG+GGG | - | chr3_3:58799811-58799830 | None:intergenic | 65.0% |
| CTCCCCCCGAAACTCTCCTC+CGG | + | chr3_3:58799816-58799835 | Msa0461020:CDS | 65.0% | |
| CTCCGGAGGAGAGTTTCGGG+GGG | - | chr3_3:58799821-58799840 | None:intergenic | 65.0% | |
| TGTAACCTCCGCGGCATCCG+TGG | + | chr3_3:58799890-58799909 | Msa0461020:CDS | 65.0% | |
| TTGCGGTGAGGGATGAGGCG+AGG | + | chr3_3:58800314-58800333 | Msa0461020:CDS | 65.0% | |
| TGCGGTGAGGGATGAGGCGA+GGG | + | chr3_3:58800315-58800334 | Msa0461020:CDS | 65.0% | |
| CAGGGTTGCGTCTGTGGCCA+TGG | + | chr3_3:58800855-58800874 | Msa0461020:CDS | 65.0% | |
| ! | CGGTCTTTGGGGGGTGGAGA+TGG | + | chr3_3:58800997-58801016 | Msa0461020:CDS | 65.0% |
| !! | GGGTGGAGATGGTGGAGAGG+TGG | + | chr3_3:58801008-58801027 | Msa0461020:CDS | 65.0% |
| GCTTTCTGAGTGGCCGGCAC+TGG | - | chr3_3:58801537-58801556 | None:intergenic | 65.0% | |
| GCCGGCCACTCAGAAAGCAG+TGG | + | chr3_3:58801539-58801558 | Msa0461020:CDS | 65.0% | |
| !! | GGGGAGTGTCGGGGACAACA+TGG | - | chr3_3:58799802-58799821 | None:intergenic | 65.0% |
| !! | GAGTTTCGGGGGGAGTGTCG+GGG | - | chr3_3:58799811-58799830 | None:intergenic | 65.0% |
| CTCCCCCCGAAACTCTCCTC+CGG | + | chr3_3:58799816-58799835 | Msa0461020:CDS | 65.0% | |
| CTCCGGAGGAGAGTTTCGGG+GGG | - | chr3_3:58799821-58799840 | None:intergenic | 65.0% | |
| TGTAACCTCCGCGGCATCCG+TGG | + | chr3_3:58799890-58799909 | Msa0461020:CDS | 65.0% | |
| TTGCGGTGAGGGATGAGGCG+AGG | + | chr3_3:58800314-58800333 | Msa0461020:CDS | 65.0% | |
| TGCGGTGAGGGATGAGGCGA+GGG | + | chr3_3:58800315-58800334 | Msa0461020:CDS | 65.0% | |
| CAGGGTTGCGTCTGTGGCCA+TGG | + | chr3_3:58800855-58800874 | Msa0461020:CDS | 65.0% | |
| ! | CGGTCTTTGGGGGGTGGAGA+TGG | + | chr3_3:58800997-58801016 | Msa0461020:CDS | 65.0% |
| !! | GGGTGGAGATGGTGGAGAGG+TGG | + | chr3_3:58801008-58801027 | Msa0461020:CDS | 65.0% |
| GCTTTCTGAGTGGCCGGCAC+TGG | - | chr3_3:58801537-58801556 | None:intergenic | 65.0% | |
| GCCGGCCACTCAGAAAGCAG+TGG | + | chr3_3:58801539-58801558 | Msa0461020:CDS | 65.0% | |
| CTCCGCGGCATCCGTGGTAC+CGG | + | chr3_3:58799896-58799915 | Msa0461020:CDS | 70.0% | |
| TGCCGGTACCACGGATGCCG+CGG | - | chr3_3:58799901-58799920 | None:intergenic | 70.0% | |
| GAGGGATGAGGCGAGGGCTG+CGG | + | chr3_3:58800321-58800340 | Msa0461020:CDS | 70.0% | |
| GGCTGCGGCGAGGGCTAAGA+GGG | + | chr3_3:58800336-58800355 | Msa0461020:CDS | 70.0% | |
| !! | GGGGGGTGGAGATGGTGGAG+AGG | + | chr3_3:58801005-58801024 | Msa0461020:CDS | 70.0% |
| CTCGATGGCGACCCCAGTGC+CGG | + | chr3_3:58801521-58801540 | Msa0461020:CDS | 70.0% | |
| CTCCGCGGCATCCGTGGTAC+CGG | + | chr3_3:58799896-58799915 | Msa0461020:CDS | 70.0% | |
| TGCCGGTACCACGGATGCCG+CGG | - | chr3_3:58799901-58799920 | None:intergenic | 70.0% | |
| GAGGGATGAGGCGAGGGCTG+CGG | + | chr3_3:58800321-58800340 | Msa0461020:CDS | 70.0% | |
| GGCTGCGGCGAGGGCTAAGA+GGG | + | chr3_3:58800336-58800355 | Msa0461020:CDS | 70.0% | |
| !! | GGGGGGTGGAGATGGTGGAG+AGG | + | chr3_3:58801005-58801024 | Msa0461020:CDS | 70.0% |
| CTCGATGGCGACCCCAGTGC+CGG | + | chr3_3:58801521-58801540 | Msa0461020:CDS | 70.0% | |
| CGGTACCACGGATGCCGCGG+AGG | - | chr3_3:58799898-58799917 | None:intergenic | 75.0% | |
| ATGAGGCGAGGGCTGCGGCG+AGG | + | chr3_3:58800326-58800345 | Msa0461020:CDS | 75.0% | |
| TGAGGCGAGGGCTGCGGCGA+GGG | + | chr3_3:58800327-58800346 | Msa0461020:CDS | 75.0% | |
| GGGCTGCGGCGAGGGCTAAG+AGG | + | chr3_3:58800335-58800354 | Msa0461020:CDS | 75.0% | |
| CGGTACCACGGATGCCGCGG+AGG | - | chr3_3:58799898-58799917 | None:intergenic | 75.0% | |
| ATGAGGCGAGGGCTGCGGCG+AGG | + | chr3_3:58800326-58800345 | Msa0461020:CDS | 75.0% | |
| TGAGGCGAGGGCTGCGGCGA+GGG | + | chr3_3:58800327-58800346 | Msa0461020:CDS | 75.0% | |
| GGGCTGCGGCGAGGGCTAAG+AGG | + | chr3_3:58800335-58800354 | Msa0461020:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 58799686 | 58801855 | 58799686 | ID=Msa0461020;Name=Msa0461020 |
| chr3_3 | mRNA | 58799686 | 58801855 | 58799686 | ID=Msa0461020-mRNA-1;Parent=Msa0461020;Name=Msa0461020-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.14|0.12|1|0|0|8|130|586 |
| chr3_3 | exon | 58799686 | 58799929 | 58799686 | ID=Msa0461020-mRNA-1:exon:12245;Parent=Msa0461020-mRNA-1 |
| chr3_3 | exon | 58799936 | 58800174 | 58799936 | ID=Msa0461020-mRNA-1:exon:12246;Parent=Msa0461020-mRNA-1 |
| chr3_3 | exon | 58800247 | 58800495 | 58800247 | ID=Msa0461020-mRNA-1:exon:12247;Parent=Msa0461020-mRNA-1 |
| chr3_3 | exon | 58800574 | 58800795 | 58800574 | ID=Msa0461020-mRNA-1:exon:12248;Parent=Msa0461020-mRNA-1 |
| chr3_3 | exon | 58800814 | 58801053 | 58800814 | ID=Msa0461020-mRNA-1:exon:12249;Parent=Msa0461020-mRNA-1 |
| chr3_3 | exon | 58801072 | 58801314 | 58801072 | ID=Msa0461020-mRNA-1:exon:12250;Parent=Msa0461020-mRNA-1 |
| chr3_3 | exon | 58801369 | 58801615 | 58801369 | ID=Msa0461020-mRNA-1:exon:12251;Parent=Msa0461020-mRNA-1 |
| chr3_3 | exon | 58801649 | 58801855 | 58801649 | ID=Msa0461020-mRNA-1:exon:12252;Parent=Msa0461020-mRNA-1 |
| chr3_3 | CDS | 58799686 | 58799929 | 58799686 | ID=Msa0461020-mRNA-1:cds;Parent=Msa0461020-mRNA-1 |
| chr3_3 | CDS | 58799936 | 58800174 | 58799936 | ID=Msa0461020-mRNA-1:cds;Parent=Msa0461020-mRNA-1 |
| chr3_3 | CDS | 58800247 | 58800495 | 58800247 | ID=Msa0461020-mRNA-1:cds;Parent=Msa0461020-mRNA-1 |
| chr3_3 | CDS | 58800574 | 58800795 | 58800574 | ID=Msa0461020-mRNA-1:cds;Parent=Msa0461020-mRNA-1 |
| chr3_3 | CDS | 58800814 | 58801053 | 58800814 | ID=Msa0461020-mRNA-1:cds;Parent=Msa0461020-mRNA-1 |
| chr3_3 | CDS | 58801072 | 58801314 | 58801072 | ID=Msa0461020-mRNA-1:cds;Parent=Msa0461020-mRNA-1 |
| chr3_3 | CDS | 58801369 | 58801615 | 58801369 | ID=Msa0461020-mRNA-1:cds;Parent=Msa0461020-mRNA-1 |
| chr3_3 | CDS | 58801649 | 58801725 | 58801649 | ID=Msa0461020-mRNA-1:cds;Parent=Msa0461020-mRNA-1 |
| chr3_3 | three_prime_UTR | 58801726 | 58801855 | 58801726 | ID=Msa0461020-mRNA-1:three_prime_utr;Parent=Msa0461020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
