Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463170 | XP_003600880.1 | 99.537 | 216 | 1 | 0 | 1 | 216 | 1 | 216 | 1.43e-149 | 424 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463170 | G7JB79 | 99.537 | 216 | 1 | 0 | 1 | 216 | 1 | 216 | 6.83e-150 | 424 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0185100 | Msa0463170 | 0.803212 | 3.881985e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463170 | MtrunA17_Chr3g0113341 | 99.537 | 216 | 1 | 0 | 1 | 216 | 1 | 216 | 1.32e-153 | 424 |
| Msa0463170 | MtrunA17_Chr2g0332311 | 41.791 | 201 | 96 | 4 | 24 | 208 | 9 | 204 | 2.30e-37 | 137 |
| Msa0463170 | MtrunA17_Chr4g0003831 | 39.901 | 203 | 100 | 4 | 24 | 209 | 10 | 207 | 1.49e-36 | 135 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463170 | AT2G40095.1 | 61.574 | 216 | 63 | 6 | 14 | 216 | 1 | 209 | 2.74e-83 | 246 |
| Msa0463170 | AT2G40095.2 | 61.574 | 216 | 63 | 6 | 14 | 216 | 1 | 209 | 2.74e-83 | 246 |
| Msa0463170 | AT3G55880.2 | 61.009 | 218 | 67 | 5 | 14 | 216 | 1 | 215 | 2.06e-77 | 232 |
| Msa0463170 | AT3G55880.3 | 61.009 | 218 | 67 | 5 | 14 | 216 | 1 | 215 | 2.06e-77 | 232 |
| Msa0463170 | AT2G40095.3 | 60.714 | 196 | 58 | 5 | 14 | 197 | 1 | 189 | 5.65e-72 | 218 |
| Msa0463170 | AT3G55880.1 | 60.000 | 200 | 62 | 5 | 14 | 198 | 1 | 197 | 1.20e-65 | 201 |
| Msa0463170 | AT3G55880.4 | 60.000 | 200 | 62 | 5 | 14 | 198 | 1 | 197 | 1.20e-65 | 201 |
| Msa0463170 | AT1G80280.1 | 41.748 | 206 | 95 | 5 | 21 | 208 | 9 | 207 | 5.21e-35 | 131 |
| Msa0463170 | AT1G52750.1 | 37.000 | 200 | 111 | 5 | 21 | 212 | 11 | 203 | 5.02e-29 | 114 |
| Msa0463170 | AT1G15490.1 | 39.320 | 206 | 100 | 6 | 21 | 208 | 9 | 207 | 1.05e-25 | 104 |
| Msa0463170 | AT1G15490.3 | 39.320 | 206 | 100 | 6 | 21 | 208 | 9 | 207 | 1.17e-25 | 104 |
Find 70 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGATGATGATTTATTAT+AGG | 0.206555 | 3_3:+62531206 | None:intergenic |
| AAATTGTTGATTGGTGTTAT+AGG | 0.235723 | 3_3:-62528508 | Msa0463170:three_prime_UTR |
| ATTGCTTACAAGGTGAATTA+AGG | 0.273486 | 3_3:+62531275 | None:intergenic |
| TTTAAAGCTGTTTATGTGTT+TGG | 0.273584 | 3_3:-62530675 | Msa0463170:CDS |
| TTGATTGGTGTTATAGGTAT+AGG | 0.310602 | 3_3:-62528502 | Msa0463170:three_prime_UTR |
| AAATGATCAGTCACTCACTA+TGG | 0.333726 | 3_3:-62528829 | Msa0463170:exon |
| TCTCTCTTCCTGAAGAATCT+TGG | 0.338218 | 3_3:+62528855 | None:intergenic |
| CAGATTTCAGCTTGCACAAA+TGG | 0.343327 | 3_3:-62528892 | Msa0463170:CDS |
| ATTATTCAAAGGAGCTGAAA+TGG | 0.344436 | 3_3:-62531167 | Msa0463170:CDS |
| TAAATCATCATCATGAGAAT+TGG | 0.352798 | 3_3:-62531199 | Msa0463170:exon |
| GTTGTTAAGGAAAGAGAAAC+AGG | 0.354501 | 3_3:+62530983 | None:intergenic |
| TAGAGAGAGAAGAAAGCTTT+TGG | 0.358985 | 3_3:-62530553 | Msa0463170:CDS |
| CTCTCTACAACTTGTTCTAT+AGG | 0.360607 | 3_3:+62530569 | None:intergenic |
| ATAGGAAAATAAAGAAATAA+AGG | 0.367369 | 3_3:+62531224 | None:intergenic |
| CTCTCTTCCTGAAGAATCTT+GGG | 0.375477 | 3_3:+62528856 | None:intergenic |
| ATGAGAAGAGAGTGTTGTTA+AGG | 0.381925 | 3_3:+62530970 | None:intergenic |
| TATAAAAGTGAATGGATTGT+TGG | 0.410589 | 3_3:-62528378 | Msa0463170:three_prime_UTR |
| GGACTAACATATTAGATTAG+AGG | 0.420459 | 3_3:-62528807 | Msa0463170:three_prime_UTR |
| GAGGTATCCCAAGATTCTTC+AGG | 0.427863 | 3_3:-62528863 | Msa0463170:CDS |
| GGTGAATTAAGGAGGGAAGA+GGG | 0.430761 | 3_3:+62531286 | None:intergenic |
| ATTGTATATATAAAAGTGAA+TGG | 0.437703 | 3_3:-62528386 | Msa0463170:three_prime_UTR |
| AGTGAATGGATTGTTGGTTA+TGG | 0.438002 | 3_3:-62528372 | Msa0463170:three_prime_UTR |
| TCAGCAATAACCAATAGAAC+CGG | 0.440120 | 3_3:+62531043 | None:intergenic |
| TTATTCAAAGGAGCTGAAAT+GGG | 0.444696 | 3_3:-62531166 | Msa0463170:CDS |
| GCTGTTTATGTGTTTGGAAA+TGG | 0.447567 | 3_3:-62530669 | Msa0463170:CDS |
| TTGTTGTGTGATTGCTTACA+AGG | 0.450633 | 3_3:+62531265 | None:intergenic |
| GTGTTCTTGTGCGTTGGCTG+TGG | 0.460083 | 3_3:-62530607 | Msa0463170:CDS |
| AGGTGAATTAAGGAGGGAAG+AGG | 0.471389 | 3_3:+62531285 | None:intergenic |
| TCAGGTTTCCTAAGGAATGC+TGG | 0.476645 | 3_3:-62528595 | Msa0463170:intron |
| ATCGTTGTTATACACAAATA+AGG | 0.477435 | 3_3:+62530729 | None:intergenic |
| AAAGAATACCAGCATTCCTT+AGG | 0.482309 | 3_3:+62528587 | None:intergenic |
| CTACTTACAGAAAATGATGA+AGG | 0.486815 | 3_3:+62530886 | None:intergenic |
| GGAAGCAAATTATTATTCAA+AGG | 0.489130 | 3_3:-62531178 | Msa0463170:CDS |
| GTTTGTGTGTTCTTGTGCGT+TGG | 0.489131 | 3_3:-62530613 | Msa0463170:CDS |
| ATCTTGTTTCAGGTTTCCTA+AGG | 0.490295 | 3_3:-62528603 | Msa0463170:intron |
| AGTTTGTATCGGTCATATAG+AGG | 0.494311 | 3_3:+62531418 | None:intergenic |
| AACTAGACTATAATCAGTGT+TGG | 0.501910 | 3_3:+62528559 | None:intergenic |
| GGAAATGGTAGTGGCTATGT+TGG | 0.502642 | 3_3:-62530654 | Msa0463170:CDS |
| AGTGTTGAGAGAAGAGCTGA+AGG | 0.503134 | 3_3:+62531010 | None:intergenic |
| AGATTTCAGCTTGCACAAAT+GGG | 0.503541 | 3_3:-62528891 | Msa0463170:CDS |
| TGTTCTTGTGCGTTGGCTGT+GGG | 0.508786 | 3_3:-62530606 | Msa0463170:CDS |
| TGAGACATAAAATTGTTGAT+TGG | 0.509232 | 3_3:-62528517 | Msa0463170:three_prime_UTR |
| TATGTGTTTGGAAATGGTAG+TGG | 0.510636 | 3_3:-62530663 | Msa0463170:CDS |
| CCTCTTGATCGTGAAAGTCT+TGG | 0.511477 | 3_3:+62530753 | None:intergenic |
| AGAGAAAGAGAGGAAGGTGC+AGG | 0.517261 | 3_3:+62531320 | None:intergenic |
| TGTATCGGTCATATAGAGGT+TGG | 0.527744 | 3_3:+62531422 | None:intergenic |
| AGAGAGGAAGGTGCAGGCCA+AGG | 0.532625 | 3_3:+62531326 | None:intergenic |
| ATAAGATATACACGAATCAA+AGG | 0.535440 | 3_3:+62528414 | None:intergenic |
| ACTAGACTATAATCAGTGTT+GGG | 0.539005 | 3_3:+62528560 | None:intergenic |
| TTAAGTCCTCATGTTCATCA+AGG | 0.539933 | 3_3:-62528722 | Msa0463170:three_prime_UTR |
| TAAGATATACACGAATCAAA+GGG | 0.547563 | 3_3:+62528415 | None:intergenic |
| AATGATCAGTCACTCACTAT+GGG | 0.560782 | 3_3:-62528828 | Msa0463170:exon |
| GCTTACAAGGTGAATTAAGG+AGG | 0.561325 | 3_3:+62531278 | None:intergenic |
| CAGCAATAACCAATAGAACC+GGG | 0.564536 | 3_3:+62531044 | None:intergenic |
| GGTGTTTATAGTTTATGTGA+TGG | 0.578444 | 3_3:-62530777 | Msa0463170:CDS |
| ATCTAAAAGAATATTAAGAG+TGG | 0.588910 | 3_3:-62531122 | Msa0463170:CDS |
| TTATGTTTAGAAGTTTGTAT+CGG | 0.592182 | 3_3:+62531407 | None:intergenic |
| TGAAGAATCTTGGGATACCT+CGG | 0.600326 | 3_3:+62528865 | None:intergenic |
| GGATCTTATTATTGAAACGA+GGG | 0.601692 | 3_3:+62530907 | None:intergenic |
| CTTACAAGGTGAATTAAGGA+GGG | 0.605131 | 3_3:+62531279 | None:intergenic |
| CCAAGACTTTCACGATCAAG+AGG | 0.609953 | 3_3:-62530753 | Msa0463170:CDS |
| GGCTGTGGGACATGTTGTCG+TGG | 0.612882 | 3_3:-62530592 | Msa0463170:CDS |
| TATTCAAAGGAGCTGAAATG+GGG | 0.618050 | 3_3:-62531165 | Msa0463170:CDS |
| GGCATTCCTTGATGAACATG+AGG | 0.624080 | 3_3:+62528716 | None:intergenic |
| AATGGTAGTGGCTATGTTGG+AGG | 0.637532 | 3_3:-62530651 | Msa0463170:CDS |
| CTTGCACAAATGGGTATCCG+AGG | 0.640579 | 3_3:-62528882 | Msa0463170:CDS |
| ATGTTCATCAAGGAATGCCA+CGG | 0.654170 | 3_3:-62528712 | Msa0463170:intron |
| GATCTTATTATTGAAACGAG+GGG | 0.673020 | 3_3:+62530908 | None:intergenic |
| AGGATCTTATTATTGAAACG+AGG | 0.676792 | 3_3:+62530906 | None:intergenic |
| AGCAATAACCAATAGAACCG+GGG | 0.697692 | 3_3:+62531045 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATAGTATCAATTAAA+AGG | + | chr3_3:62529538-62529557 | None:intergenic | 10.0% |
| !!! | TCTTTTTATAATTATTAAGT+GGG | + | chr3_3:62530775-62530794 | None:intergenic | 10.0% |
| !!! | ATCTTTTTATAATTATTAAG+TGG | + | chr3_3:62530776-62530795 | None:intergenic | 10.0% |
| !! | ATAGGAAAATAAAGAAATAA+AGG | + | chr3_3:62528571-62528590 | None:intergenic | 15.0% |
| !!! | TTTTATTTCATTTTTGATGT+AGG | - | chr3_3:62528994-62529013 | Msa0463170:intron | 15.0% |
| !! | TTAGTCAAAAATAAACATTA+TGG | - | chr3_3:62529593-62529612 | Msa0463170:intron | 15.0% |
| !! | TATTGATATTAGAACAAAAT+AGG | - | chr3_3:62530081-62530100 | Msa0463170:intron | 15.0% |
| !! | TACAAATTTGGATTAAAAAT+TGG | + | chr3_3:62530396-62530415 | None:intergenic | 15.0% |
| !! | CTTTATCAAAATTACAAATT+TGG | + | chr3_3:62530408-62530427 | None:intergenic | 15.0% |
| !! | ATAATAATTTACAAACATCT+AGG | - | chr3_3:62530586-62530605 | Msa0463170:CDS | 15.0% |
| !! | TTTAGGTAAACATATAAATA+TGG | + | chr3_3:62530830-62530849 | None:intergenic | 15.0% |
| !!! | AAAATATCAAAAGTATAACA+TGG | + | chr3_3:62530879-62530898 | None:intergenic | 15.0% |
| !! | ATTGTATATATAAAAGTGAA+TGG | - | chr3_3:62531406-62531425 | Msa0463170:five_prime_UTR | 15.0% |
| !! | TTATGTTTAGAAGTTTGTAT+CGG | + | chr3_3:62528388-62528407 | None:intergenic | 20.0% |
| !!! | TCATGATGATGATTTATTAT+AGG | + | chr3_3:62528589-62528608 | None:intergenic | 20.0% |
| !! | ATCTAAAAGAATATTAAGAG+TGG | - | chr3_3:62528670-62528689 | Msa0463170:intron | 20.0% |
| !! | CCTTTAATTAAAATCCAAAA+GGG | + | chr3_3:62528969-62528988 | None:intergenic | 20.0% |
| !!! | CCTTTTGGATTTTAATTAAA+GGG | - | chr3_3:62528967-62528986 | Msa0463170:intron | 20.0% |
| !! | TTTGAAAAATTTATGTGAGA+AGG | + | chr3_3:62529324-62529343 | None:intergenic | 20.0% |
| !!! | CATTGATATTTTCAACATTT+TGG | - | chr3_3:62529564-62529583 | Msa0463170:intron | 20.0% |
| !!! | AATTTCATCTTTTAGAATGT+AGG | - | chr3_3:62529898-62529917 | Msa0463170:intron | 20.0% |
| !! | TGTTCTAATATCAATAAGAA+AGG | + | chr3_3:62530077-62530096 | None:intergenic | 20.0% |
| !! | AATTTGGATTAAAAATTGGA+GGG | + | chr3_3:62530392-62530411 | None:intergenic | 20.0% |
| !! | AAATTTGGATTAAAAATTGG+AGG | + | chr3_3:62530393-62530412 | None:intergenic | 20.0% |
| !!! | ATTTTGATAAAATCAAGACT+TGG | - | chr3_3:62530453-62530472 | Msa0463170:intron | 20.0% |
| !! | TATTATGTATAGTCAAAATG+TGG | + | chr3_3:62530569-62530588 | None:intergenic | 20.0% |
| !! | TATTATTAATTGTTGCTAGT+GGG | + | chr3_3:62530745-62530764 | None:intergenic | 20.0% |
| !!! | TAGTCACATTCAATATTTTT+AGG | + | chr3_3:62530847-62530866 | None:intergenic | 20.0% |
| !!! | AAAAAGTAGCAATTAGATTT+TGG | + | chr3_3:62531166-62531185 | None:intergenic | 20.0% |
| ! | TAAATCATCATCATGAGAAT+TGG | - | chr3_3:62528593-62528612 | Msa0463170:three_prime_UTR | 25.0% |
| ! | GGAAGCAAATTATTATTCAA+AGG | - | chr3_3:62528614-62528633 | Msa0463170:intron | 25.0% |
| !! | TTAATTTTCAATGACCCTTT+TGG | - | chr3_3:62528952-62528971 | Msa0463170:intron | 25.0% |
| !!! | CCCTTTTGGATTTTAATTAA+AGG | - | chr3_3:62528966-62528985 | Msa0463170:intron | 25.0% |
| ! | CCCTTTAATTAAAATCCAAA+AGG | + | chr3_3:62528970-62528989 | None:intergenic | 25.0% |
| ! | ATCGTTGTTATACACAAATA+AGG | + | chr3_3:62529066-62529085 | None:intergenic | 25.0% |
| !! | TTTAAAGCTGTTTATGTGTT+TGG | - | chr3_3:62529117-62529136 | Msa0463170:intron | 25.0% |
| !! | TTTTAAATGGTACTTACGAT+AGG | + | chr3_3:62530033-62530052 | None:intergenic | 25.0% |
| !! | GTAAGTACCATTTAAAATCA+AGG | - | chr3_3:62530036-62530055 | Msa0463170:intron | 25.0% |
| !! | GAAGTTTCCTTGATTTTAAA+TGG | + | chr3_3:62530046-62530065 | None:intergenic | 25.0% |
| ! | CAAAGCTGAACAAATTAAAT+AGG | + | chr3_3:62530194-62530213 | None:intergenic | 25.0% |
| !!! | CTATTTAATTTGTTCAGCTT+TGG | - | chr3_3:62530192-62530211 | Msa0463170:intron | 25.0% |
| !! | TTTTGAATACAGCATATATG+AGG | - | chr3_3:62530235-62530254 | Msa0463170:intron | 25.0% |
| ! | GGGTATAAATGTATAATACA+TGG | - | chr3_3:62530276-62530295 | Msa0463170:intron | 25.0% |
| ! | ACTAGTATATGAATATGATG+TGG | + | chr3_3:62530322-62530341 | None:intergenic | 25.0% |
| ! | ATTTGGAAGAGTAATTCAAT+GGG | + | chr3_3:62530361-62530380 | None:intergenic | 25.0% |
| ! | TATTTGGAAGAGTAATTCAA+TGG | + | chr3_3:62530362-62530381 | None:intergenic | 25.0% |
| !! | GTCTTGATTTTATCAAAATC+AGG | + | chr3_3:62530452-62530471 | None:intergenic | 25.0% |
| ! | TTCAAAGAATATGTTCAAGT+GGG | - | chr3_3:62530523-62530542 | Msa0463170:intron | 25.0% |
| !!! | TATTTTTTGCCTTAAGAGAA+TGG | - | chr3_3:62530676-62530695 | Msa0463170:CDS | 25.0% |
| ! | CTATTATTAATTGTTGCTAG+TGG | + | chr3_3:62530746-62530765 | None:intergenic | 25.0% |
| ! | CACTAGCAACAATTAATAAT+AGG | - | chr3_3:62530744-62530763 | Msa0463170:CDS | 25.0% |
| !!! | ACTTTTTGTAATCTTGTTTC+AGG | - | chr3_3:62531179-62531198 | Msa0463170:CDS | 25.0% |
| !! | ATCAACAATTTTATGTCTCA+TGG | + | chr3_3:62531275-62531294 | None:intergenic | 25.0% |
| ! | TGAGACATAAAATTGTTGAT+TGG | - | chr3_3:62531275-62531294 | Msa0463170:five_prime_UTR | 25.0% |
| !!! | AAATTGTTGATTGGTGTTAT+AGG | - | chr3_3:62531284-62531303 | Msa0463170:five_prime_UTR | 25.0% |
| !!! | GGTATATATAGCTTTAGTTT+TGG | - | chr3_3:62531311-62531330 | Msa0463170:five_prime_UTR | 25.0% |
| ! | TAAGATATACACGAATCAAA+GGG | + | chr3_3:62531380-62531399 | None:intergenic | 25.0% |
| ! | ATAAGATATACACGAATCAA+AGG | + | chr3_3:62531381-62531400 | None:intergenic | 25.0% |
| !!! | TATAAAAGTGAATGGATTGT+TGG | - | chr3_3:62531414-62531433 | Msa0463170:five_prime_UTR | 25.0% |
| ATTGCTTACAAGGTGAATTA+AGG | + | chr3_3:62528520-62528539 | None:intergenic | 30.0% | |
| ATTATTCAAAGGAGCTGAAA+TGG | - | chr3_3:62528625-62528644 | Msa0463170:intron | 30.0% | |
| TTATTCAAAGGAGCTGAAAT+GGG | - | chr3_3:62528626-62528645 | Msa0463170:intron | 30.0% | |
| GATCTTATTATTGAAACGAG+GGG | + | chr3_3:62528887-62528906 | None:intergenic | 30.0% | |
| GGATCTTATTATTGAAACGA+GGG | + | chr3_3:62528888-62528907 | None:intergenic | 30.0% | |
| AGGATCTTATTATTGAAACG+AGG | + | chr3_3:62528889-62528908 | None:intergenic | 30.0% | |
| CTACTTACAGAAAATGATGA+AGG | + | chr3_3:62528909-62528928 | None:intergenic | 30.0% | |
| GGTGTTTATAGTTTATGTGA+TGG | - | chr3_3:62529015-62529034 | Msa0463170:intron | 30.0% | |
| TATCAATTAAAAGGTTCACG+CGG | + | chr3_3:62529529-62529548 | None:intergenic | 30.0% | |
| ! | AACTAATGGGAATTTTTGTG+AGG | - | chr3_3:62529994-62530013 | Msa0463170:intron | 30.0% |
| ATGTATAATACATGGCCATA+AGG | - | chr3_3:62530284-62530303 | Msa0463170:intron | 30.0% | |
| TGTATAATACATGGCCATAA+GGG | - | chr3_3:62530285-62530304 | Msa0463170:intron | 30.0% | |
| GTTCAAAGAATATGTTCAAG+TGG | - | chr3_3:62530522-62530541 | Msa0463170:intron | 30.0% | |
| ATATGGCATGAAAAGAACAT+GGG | + | chr3_3:62530813-62530832 | None:intergenic | 30.0% | |
| AATATGGCATGAAAAGAACA+TGG | + | chr3_3:62530814-62530833 | None:intergenic | 30.0% | |
| GGACTAACATATTAGATTAG+AGG | - | chr3_3:62530985-62531004 | Msa0463170:CDS | 30.0% | |
| ACTAGACTATAATCAGTGTT+GGG | + | chr3_3:62531235-62531254 | None:intergenic | 30.0% | |
| AACTAGACTATAATCAGTGT+TGG | + | chr3_3:62531236-62531255 | None:intergenic | 30.0% | |
| ! | AATTTTATGTCTCATGGTAG+CGG | + | chr3_3:62531269-62531288 | None:intergenic | 30.0% |
| !! | TTGATTGGTGTTATAGGTAT+AGG | - | chr3_3:62531290-62531309 | Msa0463170:five_prime_UTR | 30.0% |
| ! | AGTTTGTATCGGTCATATAG+AGG | + | chr3_3:62528377-62528396 | None:intergenic | 35.0% |
| ! | TAGTCAATTTTGTTGCACCT+TGG | - | chr3_3:62528449-62528468 | Msa0463170:three_prime_UTR | 35.0% |
| AAAAAGAGAGAAAGAGAGGA+AGG | + | chr3_3:62528481-62528500 | None:intergenic | 35.0% | |
| GAAGAAAAAGAGAGAAAGAG+AGG | + | chr3_3:62528485-62528504 | None:intergenic | 35.0% | |
| CTTACAAGGTGAATTAAGGA+GGG | + | chr3_3:62528516-62528535 | None:intergenic | 35.0% | |
| TTGTTGTGTGATTGCTTACA+AGG | + | chr3_3:62528530-62528549 | None:intergenic | 35.0% | |
| TATTCAAAGGAGCTGAAATG+GGG | - | chr3_3:62528627-62528646 | Msa0463170:intron | 35.0% | |
| TCAGCAATAACCAATAGAAC+CGG | + | chr3_3:62528752-62528771 | None:intergenic | 35.0% | |
| GTTGTTAAGGAAAGAGAAAC+AGG | + | chr3_3:62528812-62528831 | None:intergenic | 35.0% | |
| !! | ATGAGAAGAGAGTGTTGTTA+AGG | + | chr3_3:62528825-62528844 | None:intergenic | 35.0% |
| GCTGTTTATGTGTTTGGAAA+TGG | - | chr3_3:62529123-62529142 | Msa0463170:intron | 35.0% | |
| TATGTGTTTGGAAATGGTAG+TGG | - | chr3_3:62529129-62529148 | Msa0463170:intron | 35.0% | |
| ! | CTCTCTACAACTTGTTCTAT+AGG | + | chr3_3:62529226-62529245 | None:intergenic | 35.0% |
| ! | TAGAGAGAGAAGAAAGCTTT+TGG | - | chr3_3:62529239-62529258 | Msa0463170:intron | 35.0% |
| !! | TGGTTGGTAAATGGATTGAA+GGG | + | chr3_3:62529297-62529316 | None:intergenic | 35.0% |
| AATTTATGTGAGAAGGCAAG+TGG | + | chr3_3:62529317-62529336 | None:intergenic | 35.0% | |
| CGTAAATTTGTGTGCAAATG+TGG | - | chr3_3:62529492-62529511 | Msa0463170:intron | 35.0% | |
| TAAGCAAACTGGAAACTACT+TGG | + | chr3_3:62529942-62529961 | None:intergenic | 35.0% | |
| ! | TTCCAGTTTGCTTAATGACT+TGG | - | chr3_3:62529948-62529967 | Msa0463170:intron | 35.0% |
| ! | TTGCTTAATGACTTGGAGTA+TGG | - | chr3_3:62529955-62529974 | Msa0463170:intron | 35.0% |
| CTTTCACGATAGGAACTAAT+GGG | - | chr3_3:62529981-62530000 | Msa0463170:intron | 35.0% | |
| ! | GGAATTTTTGTGAGGTAACA+AGG | - | chr3_3:62530002-62530021 | Msa0463170:intron | 35.0% |
| AAATGGTACTTACGATAGGT+GGG | + | chr3_3:62530029-62530048 | None:intergenic | 35.0% | |
| TAAATGGTACTTACGATAGG+TGG | + | chr3_3:62530030-62530049 | None:intergenic | 35.0% | |
| GTTGAATTTCCTTTGTCTTC+TGG | - | chr3_3:62530105-62530124 | Msa0463170:intron | 35.0% | |
| AATTTCCTTTGTCTTCTGGA+AGG | - | chr3_3:62530109-62530128 | Msa0463170:intron | 35.0% | |
| ! | ACTTTGATGACAATTCCACT+TGG | - | chr3_3:62530143-62530162 | Msa0463170:intron | 35.0% |
| TGAATACAGCATATATGAGG+TGG | - | chr3_3:62530238-62530257 | Msa0463170:intron | 35.0% | |
| ATATGAGGTGGTTGTTAAGT+TGG | - | chr3_3:62530250-62530269 | Msa0463170:intron | 35.0% | |
| TATGAGGTGGTTGTTAAGTT+GGG | - | chr3_3:62530251-62530270 | Msa0463170:intron | 35.0% | |
| GTATAATACATGGCCATAAG+GGG | - | chr3_3:62530286-62530305 | Msa0463170:intron | 35.0% | |
| CAAAATGTGGTCACCAATTT+AGG | + | chr3_3:62530556-62530575 | None:intergenic | 35.0% | |
| CAATATTGGCCATTCTCTTA+AGG | + | chr3_3:62530688-62530707 | None:intergenic | 35.0% | |
| AGATTTCAGCTTGCACAAAT+GGG | - | chr3_3:62530901-62530920 | Msa0463170:CDS | 35.0% | |
| AAATGATCAGTCACTCACTA+TGG | - | chr3_3:62530963-62530982 | Msa0463170:CDS | 35.0% | |
| AATGATCAGTCACTCACTAT+GGG | - | chr3_3:62530964-62530983 | Msa0463170:CDS | 35.0% | |
| TTAAGTCCTCATGTTCATCA+AGG | - | chr3_3:62531070-62531089 | Msa0463170:CDS | 35.0% | |
| CTCTCAAAAGATAATTACCG+TGG | + | chr3_3:62531100-62531119 | None:intergenic | 35.0% | |
| !! | ATCTTGTTTCAGGTTTCCTA+AGG | - | chr3_3:62531189-62531208 | Msa0463170:CDS | 35.0% |
| AAAGAATACCAGCATTCCTT+AGG | + | chr3_3:62531208-62531227 | None:intergenic | 35.0% | |
| !! | AGTGAATGGATTGTTGGTTA+TGG | - | chr3_3:62531420-62531439 | Msa0463170:five_prime_UTR | 35.0% |
| ! | TGTATCGGTCATATAGAGGT+TGG | + | chr3_3:62528373-62528392 | None:intergenic | 40.0% |
| GCTTACAAGGTGAATTAAGG+AGG | + | chr3_3:62528517-62528536 | None:intergenic | 40.0% | |
| ! | ACTTCTTCTATTTTCTGCCC+CGG | - | chr3_3:62528730-62528749 | Msa0463170:three_prime_UTR | 40.0% |
| AGCAATAACCAATAGAACCG+GGG | + | chr3_3:62528750-62528769 | None:intergenic | 40.0% | |
| CAGCAATAACCAATAGAACC+GGG | + | chr3_3:62528751-62528770 | None:intergenic | 40.0% | |
| !! | GTGGTTGGTAAATGGATTGA+AGG | + | chr3_3:62529298-62529317 | None:intergenic | 40.0% |
| CTCCAAGTCATTAAGCAAAC+TGG | + | chr3_3:62529953-62529972 | None:intergenic | 40.0% | |
| ! | CTTAATGACTTGGAGTATGG+TGG | - | chr3_3:62529958-62529977 | Msa0463170:intron | 40.0% |
| GCTTTCACGATAGGAACTAA+TGG | - | chr3_3:62529980-62529999 | Msa0463170:intron | 40.0% | |
| CAATACCTTCCAGAAGACAA+AGG | + | chr3_3:62530117-62530136 | None:intergenic | 40.0% | |
| ! | CTTTGTCTTCTGGAAGGTAT+TGG | - | chr3_3:62530115-62530134 | Msa0463170:intron | 40.0% |
| TTTGCTTTCAAGCATCCAAG+TGG | + | chr3_3:62530161-62530180 | None:intergenic | 40.0% | |
| TGGAATCCAATATCCCCTTA+TGG | + | chr3_3:62530302-62530321 | None:intergenic | 40.0% | |
| ATTGGAGGGTTGAGACTATT+TGG | + | chr3_3:62530378-62530397 | None:intergenic | 40.0% | |
| TTATGCCACATGCGAAGATA+TGG | - | chr3_3:62530619-62530638 | Msa0463170:CDS | 40.0% | |
| TAACACCATATCTTCGCATG+TGG | + | chr3_3:62530627-62530646 | None:intergenic | 40.0% | |
| CCAATATTGCCAACGCAATT+GGG | - | chr3_3:62530699-62530718 | Msa0463170:CDS | 40.0% | |
| CAGATTTCAGCTTGCACAAA+TGG | - | chr3_3:62530900-62530919 | Msa0463170:CDS | 40.0% | |
| TGAAGAATCTTGGGATACCT+CGG | + | chr3_3:62530930-62530949 | None:intergenic | 40.0% | |
| CTCTCTTCCTGAAGAATCTT+GGG | + | chr3_3:62530939-62530958 | None:intergenic | 40.0% | |
| TCTCTCTTCCTGAAGAATCT+TGG | + | chr3_3:62530940-62530959 | None:intergenic | 40.0% | |
| ATGTTCATCAAGGAATGCCA+CGG | - | chr3_3:62531080-62531099 | Msa0463170:CDS | 40.0% | |
| GGTGAATTAAGGAGGGAAGA+GGG | + | chr3_3:62528509-62528528 | None:intergenic | 45.0% | |
| AGGTGAATTAAGGAGGGAAG+AGG | + | chr3_3:62528510-62528529 | None:intergenic | 45.0% | |
| ! | ATTTTCTGCCCCGGTTCTAT+TGG | - | chr3_3:62528739-62528758 | Msa0463170:three_prime_UTR | 45.0% |
| ! | AGTGTTGAGAGAAGAGCTGA+AGG | + | chr3_3:62528785-62528804 | None:intergenic | 45.0% |
| CCTCTTGATCGTGAAAGTCT+TGG | + | chr3_3:62529042-62529061 | None:intergenic | 45.0% | |
| CCAAGACTTTCACGATCAAG+AGG | - | chr3_3:62529039-62529058 | Msa0463170:intron | 45.0% | |
| !! | GGAAATGGTAGTGGCTATGT+TGG | - | chr3_3:62529138-62529157 | Msa0463170:intron | 45.0% |
| !! | AATGGTAGTGGCTATGTTGG+AGG | - | chr3_3:62529141-62529160 | Msa0463170:intron | 45.0% |
| GTTTGTGTGTTCTTGTGCGT+TGG | - | chr3_3:62529179-62529198 | Msa0463170:intron | 45.0% | |
| !! | GAAGGCAAGTGGTTGGTAAA+TGG | + | chr3_3:62529306-62529325 | None:intergenic | 45.0% |
| TATGTGAGAAGGCAAGTGGT+TGG | + | chr3_3:62529313-62529332 | None:intergenic | 45.0% | |
| AGTATGGTGGCTTTCACGAT+AGG | - | chr3_3:62529971-62529990 | Msa0463170:intron | 45.0% | |
| !! | AGGTGGTTGTTAAGTTGGGT+AGG | - | chr3_3:62530255-62530274 | Msa0463170:intron | 45.0% |
| !! | GGTGGTTGTTAAGTTGGGTA+GGG | - | chr3_3:62530256-62530275 | Msa0463170:intron | 45.0% |
| ACATGGCCATAAGGGGATAT+TGG | - | chr3_3:62530293-62530312 | Msa0463170:intron | 45.0% | |
| AGTGGGAACACGTCCTAAAT+TGG | - | chr3_3:62530540-62530559 | Msa0463170:CDS | 45.0% | |
| GCCAATATTGCCAACGCAAT+TGG | - | chr3_3:62530698-62530717 | Msa0463170:CDS | 45.0% | |
| ! | CCCAATTGCGTTGGCAATAT+TGG | + | chr3_3:62530702-62530721 | None:intergenic | 45.0% |
| TGGGTATTCTCCAACTTGCA+GGG | + | chr3_3:62530726-62530745 | None:intergenic | 45.0% | |
| ! | GAGGTATCCCAAGATTCTTC+AGG | - | chr3_3:62530929-62530948 | Msa0463170:CDS | 45.0% |
| GGCATTCCTTGATGAACATG+AGG | + | chr3_3:62531079-62531098 | None:intergenic | 45.0% | |
| TCAGGTTTCCTAAGGAATGC+TGG | - | chr3_3:62531197-62531216 | Msa0463170:exon | 45.0% | |
| ! | AGAGAAAGAGAGGAAGGTGC+AGG | + | chr3_3:62528475-62528494 | None:intergenic | 50.0% |
| !! | TGTTCTTGTGCGTTGGCTGT+GGG | - | chr3_3:62529186-62529205 | Msa0463170:intron | 50.0% |
| GTGGGTATTCTCCAACTTGC+AGG | + | chr3_3:62530727-62530746 | None:intergenic | 50.0% | |
| CTTGCACAAATGGGTATCCG+AGG | - | chr3_3:62530910-62530929 | Msa0463170:CDS | 50.0% | |
| !! | GTGTTCTTGTGCGTTGGCTG+TGG | - | chr3_3:62529185-62529204 | Msa0463170:intron | 55.0% |
| TTGCAGGGTCCCAATTGCGT+TGG | + | chr3_3:62530711-62530730 | None:intergenic | 55.0% | |
| GCAATTGGGACCCTGCAAGT+TGG | - | chr3_3:62530713-62530732 | Msa0463170:CDS | 55.0% | |
| ! | AGAGAGGAAGGTGCAGGCCA+AGG | + | chr3_3:62528469-62528488 | None:intergenic | 60.0% |
| GGCTGTGGGACATGTTGTCG+TGG | - | chr3_3:62529200-62529219 | Msa0463170:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 62528370 | 62531444 | 62528370 | ID=Msa0463170;Name=Msa0463170 |
| chr3_3 | mRNA | 62528370 | 62531444 | 62528370 | ID=Msa0463170-mRNA-1;Parent=Msa0463170;Name=Msa0463170-mRNA-1;_AED=0.06;_eAED=0.06;_QI=235|1|1|1|0.5|0.4|5|357|216 |
| chr3_3 | exon | 62528370 | 62528472 | 62528370 | ID=Msa0463170-mRNA-1:exon:13422;Parent=Msa0463170-mRNA-1 |
| chr3_3 | exon | 62528493 | 62528613 | 62528493 | ID=Msa0463170-mRNA-1:exon:13421;Parent=Msa0463170-mRNA-1 |
| chr3_3 | exon | 62528713 | 62528911 | 62528713 | ID=Msa0463170-mRNA-1:exon:13420;Parent=Msa0463170-mRNA-1 |
| chr3_3 | exon | 62530530 | 62530798 | 62530530 | ID=Msa0463170-mRNA-1:exon:13419;Parent=Msa0463170-mRNA-1 |
| chr3_3 | exon | 62530894 | 62531444 | 62530894 | ID=Msa0463170-mRNA-1:exon:13418;Parent=Msa0463170-mRNA-1 |
| chr3_3 | five_prime_UTR | 62531210 | 62531444 | 62531210 | ID=Msa0463170-mRNA-1:five_prime_utr;Parent=Msa0463170-mRNA-1 |
| chr3_3 | CDS | 62530894 | 62531209 | 62530894 | ID=Msa0463170-mRNA-1:cds;Parent=Msa0463170-mRNA-1 |
| chr3_3 | CDS | 62530530 | 62530798 | 62530530 | ID=Msa0463170-mRNA-1:cds;Parent=Msa0463170-mRNA-1 |
| chr3_3 | CDS | 62528846 | 62528911 | 62528846 | ID=Msa0463170-mRNA-1:cds;Parent=Msa0463170-mRNA-1 |
| chr3_3 | three_prime_UTR | 62528713 | 62528845 | 62528713 | ID=Msa0463170-mRNA-1:three_prime_utr;Parent=Msa0463170-mRNA-1 |
| chr3_3 | three_prime_UTR | 62528493 | 62528613 | 62528493 | ID=Msa0463170-mRNA-1:three_prime_utr;Parent=Msa0463170-mRNA-1 |
| chr3_3 | three_prime_UTR | 62528370 | 62528472 | 62528370 | ID=Msa0463170-mRNA-1:three_prime_utr;Parent=Msa0463170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
