AlfalfaGEDB | Msa0468710

M. sativa cultivar zhongmu-4 / Msa0468710

KEGG: -
GO: GO:0000981 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF13837.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0468710	XP_003601834.1	99.231	390	3	0	1	390	1	390	0.0	811

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0468710	sp\|Q9FX53\|TGT1_ARATH	67.892	408	102	11	5	389	4	405	0.0	514

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0468710	G7J2H9	99.231	390	3	0	1	390	1	390	0.0	811

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TFs/TRs:

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Gene ID	Type	Classification
Msa0468710	TF	Trihelix

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0422060	Msa0468710	0.998738	8.522824e-275	-8.615850e-47
Msa0468710	Msa0514590	0.967145	7.100240e-127	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0468710	MtrunA17_Chr3g0123021	99.231	390	3	0	1	390	1	390	0.0	811
Msa0468710	MtrunA17_Chr5g0409071	36.000	125	72	3	50	172	19	137	1.39e-14	73.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0468710	AT1G13450.1	67.892	408	102	11	5	389	4	405	0.0	514
Msa0468710	AT3G25990.1	66.756	373	103	5	21	389	16	371	7.16e-179	502
Msa0468710	AT1G13450.3	65.217	276	69	10	1	255	1	270	3.52e-103	306
Msa0468710	AT1G13450.2	65.217	276	69	10	1	255	1	270	3.52e-103	306
Msa0468710	AT1G13450.4	63.964	222	56	8	5	207	4	220	3.31e-74	231
Msa0468710	AT2G38250.1	43.878	98	43	2	40	137	17	102	2.11e-15	76.6
Msa0468710	AT5G01380.1	31.579	114	75	1	77	190	52	162	1.14e-12	68.9
Msa0468710	AT1G76880.1	34.188	117	71	3	55	169	388	500	9.90e-11	63.9

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Find 135 sgRNAs with CRISPR-Local

Find 386 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCACGGTAATCATCCT+CGG	0.581502	3_3:+70402893	None:intergenic
AAAGAAACGCGCGGAAACCT+GGG	0.551251	3_3:-70407263	Msa0468710:CDS
AAAGCGAAGCATCATGATCG+AGG	0.672309	3_3:-70407061	Msa0468710:CDS
AAAGGGTAGAAGGTGGGTTT+TGG	0.252222	3_3:+70407640	None:intergenic
AAAGTCAGTCTTGCTGTGGA+AGG	0.533418	3_3:-70403395	Msa0468710:CDS
AACGGGTCCAAAAGAAATGT+TGG	0.546852	3_3:+70404979	None:intergenic
AACTAAACAAATACAGTTTC+AGG	0.246226	3_3:+70402662	None:intergenic
AAGCATCATGATCGAGGTGG+TGG	0.503110	3_3:-70407055	Msa0468710:CDS
AAGCCATAAAGGAGGCAATT+AGG	0.234916	3_3:-70403314	Msa0468710:CDS
AAGGGTTATATCAGTCAAAT+GGG	0.461970	3_3:-70403376	Msa0468710:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGTAATCGATTGAAGAAG+AGG	+	chr3_3:70402479-70402498	None:intergenic	30.0%
CTTCTTTGTAGAAATCGATT+GGG	+	chr3_3:70402554-70402573	None:intergenic	30.0%
TCTTCTTTGTAGAAATCGAT+TGG	+	chr3_3:70402555-70402574	None:intergenic	30.0%
CATTTATCAGTACACATAGT+CGG	+	chr3_3:70402891-70402910	None:intergenic	30.0%
CACTATAATTCGAAACAAAC+AGG	+	chr3_3:70403452-70403471	None:intergenic	30.0%
CTGTTTGTTTCGAATTATAG+TGG	-	chr3_3:70403450-70403469	Msa0468710:intron	30.0%
GCTATATCATAATTGCATAG+TGG	-	chr3_3:70403666-70403685	Msa0468710:intron	30.0%
ACAAATTTGGTCCAAAAAGA+AGG	-	chr3_3:70404146-70404165	Msa0468710:intron	30.0%
CAAATTTGGTCCAAAAAGAA+GGG	-	chr3_3:70404147-70404166	Msa0468710:intron	30.0%
ACTTCATAATACAAGAAGCA+CGG	+	chr3_3:70404217-70404236	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	70402318	70407701	70402318	ID=Msa0468710;Name=Msa0468710
chr3_3	mRNA	70402318	70407701	70402318	ID=Msa0468710-mRNA-1;Parent=Msa0468710;Name=Msa0468710-mRNA-1;_AED=0.03;_eAED=0.03;_QI=207\|1\|1\|1\|0.6\|0.5\|6\|273\|390
chr3_3	exon	70402318	70402353	70402318	ID=Msa0468710-mRNA-1:exon:17045;Parent=Msa0468710-mRNA-1
chr3_3	exon	70402551	70402990	70402551	ID=Msa0468710-mRNA-1:exon:17044;Parent=Msa0468710-mRNA-1
chr3_3	exon	70403199	70403423	70403199	ID=Msa0468710-mRNA-1:exon:17043;Parent=Msa0468710-mRNA-1
chr3_3	exon	70403520	70403648	70403520	ID=Msa0468710-mRNA-1:exon:17042;Parent=Msa0468710-mRNA-1
chr3_3	exon	70404975	70405013	70404975	ID=Msa0468710-mRNA-1:exon:17041;Parent=Msa0468710-mRNA-1
chr3_3	exon	70406918	70407701	70406918	ID=Msa0468710-mRNA-1:exon:17040;Parent=Msa0468710-mRNA-1
chr3_3	five_prime_UTR	70407495	70407701	70407495	ID=Msa0468710-mRNA-1:five_prime_utr;Parent=Msa0468710-mRNA-1
chr3_3	CDS	70406918	70407494	70406918	ID=Msa0468710-mRNA-1:cds;Parent=Msa0468710-mRNA-1
chr3_3	CDS	70404975	70405013	70404975	ID=Msa0468710-mRNA-1:cds;Parent=Msa0468710-mRNA-1
chr3_3	CDS	70403520	70403648	70403520	ID=Msa0468710-mRNA-1:cds;Parent=Msa0468710-mRNA-1
chr3_3	CDS	70403199	70403423	70403199	ID=Msa0468710-mRNA-1:cds;Parent=Msa0468710-mRNA-1
chr3_3	CDS	70402788	70402990	70402788	ID=Msa0468710-mRNA-1:cds;Parent=Msa0468710-mRNA-1
chr3_3	three_prime_UTR	70402551	70402787	70402551	ID=Msa0468710-mRNA-1:three_prime_utr;Parent=Msa0468710-mRNA-1
chr3_3	three_prime_UTR	70402318	70402353	70402318	ID=Msa0468710-mRNA-1:three_prime_utr;Parent=Msa0468710-mRNA-1

Gene Sequence

>Msa0468710

ATGTATTTATCATCAGAAAAGCCTCGCCCAATCGATTTCTACAAAGAAGAAGCACGCGACATGATGATGGAAGTAGTAGCCAACACCGATCTTCAACCACCACCACCGCCACCGCCGCAACACCACCACCACCTTCAACAACAACAACCGCAAATGATTCTCACCGCCGAGAGCAGCGGCGACGATCCTGAGATGGAGATCAAAGCTCCAAAGAAACGCGCGGAAACCTGGGTTCAAGACGAGACACGAAGCCTCATTGGTCTACGACGCGAGATGGATTCGTTATTCAACACTTCGAAGTCGAATAAGCATCTTTGGGAGCAGATTTCAGCGAAGATGAGAGAAAAGGGTTTTGATCGGTCACCGACTATGTGTACTGATAAATGGAGGAATCTTTTGAAAGAGTTTAAGAAAGCGAAGCATCATGATCGAGGTGGTGGAAGTGGTTCTGGTGGGAAAATGAGTTGTTACAAAGAGATTGACGAGATCTTAAGAGAGAGAAGTAAGTGTGGACAATATAAGAGTGTTGTTACACCTACTTCTAAAGTTGAATCTTCTTACATGCAATTTGATAAAGGTATTGATGATGCCAACATTTCTTTTGGACCCGTTGAAGCTTCTGGAAGACCAACACTCAATCTTGAGAGAAGTTTGGATCATGATGGGCATCCTCTTGCCATTGCCGCAGCAGATGTTGCAGCAAGCGGAGTCCCTCCTTGGAATTGGAGAGAAACTCCCGGAAATGGTGGGGAAAGTCAGTCTTGCTGTGGAAGGGTTATATCAGTCAAATGGGGTGATTATACAAGACGGATAGGTATTGATGGCACTCCGGAAGCCATAAAGGAGGCAATTAGGGCCGCTTTTAGGTTGAGAACTAAACGTGCATTTTGGTTGGAGGATGAGGAACAGATTATCAGAAGTATTGACCGTGACATGCCTATTGGAAATTACACTCTTCACCTTGATGAAGGAATGGCCATCAAAGTATGCCTATATGACGAGTCTGACCATATCCCTGTGCATACTGAAGAGAAGATATTTTATACCGAGGATGATTACCGTGATTTTCTGGCACGTCGGGCTTGGACAGGTCTAAGAGAATTTGATGGTTATAGGAATATTGACAATATGGATGATCTTCGGCCTGGTGCCATATACCGAGGCGTGAGTTGA

Protein sequence

>Msa0468710

MYLSSEKPRPIDFYKEEARDMMMEVVANTDLQPPPPPPPQHHHHLQQQQPQMILTAESSGDDPEMEIKAPKKRAETWVQDETRSLIGLRREMDSLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGGGSGSGGKMSCYKEIDEILRERSKCGQYKSVVTPTSKVESSYMQFDKGIDDANISFGPVEASGRPTLNLERSLDHDGHPLAIAAADVAASGVPPWNWRETPGNGGESQSCCGRVISVKWGDYTRRIGIDGTPEAIKEAIRAAFRLRTKRAFWLEDEEQIIRSIDRDMPIGNYTLHLDEGMAIKVCLYDESDHIPVHTEEKIFYTEDDYRDFLARRAWTGLREFDGYRNIDNMDDLRPGAIYRGVS*