Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469120 | XP_039687563.1 | 76.173 | 533 | 30 | 4 | 1 | 436 | 1 | 533 | 0.0 | 781 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469120 | sp|Q12626|EXG_PICAN | 33.333 | 225 | 143 | 4 | 120 | 339 | 80 | 302 | 1.49e-33 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469120 | G7J373 | 76.173 | 533 | 30 | 4 | 1 | 436 | 1 | 533 | 0.0 | 781 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0469120 | Msa0514860 | 0.878153 | 3.536868e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469120 | MtrunA17_Chr3g0123661 | 76.173 | 533 | 30 | 4 | 1 | 436 | 1 | 533 | 0.0 | 781 |
| Msa0469120 | MtrunA17_Chr5g0425361 | 40.928 | 474 | 181 | 6 | 33 | 408 | 35 | 507 | 1.46e-119 | 358 |
| Msa0469120 | MtrunA17_Chr5g0425401 | 37.844 | 473 | 197 | 4 | 33 | 408 | 33 | 505 | 1.03e-112 | 340 |
| Msa0469120 | MtrunA17_Chr3g0079461 | 39.662 | 474 | 178 | 11 | 36 | 408 | 31 | 497 | 2.28e-102 | 313 |
| Msa0469120 | MtrunA17_Chr8g0382641 | 36.853 | 502 | 205 | 10 | 11 | 408 | 13 | 506 | 3.38e-100 | 308 |
| Msa0469120 | MtrunA17_Chr3g0079451 | 37.764 | 474 | 187 | 9 | 36 | 408 | 7 | 473 | 4.88e-99 | 305 |
| Msa0469120 | MtrunA17_Chr3g0079431 | 37.553 | 474 | 190 | 10 | 33 | 408 | 24 | 489 | 5.72e-96 | 296 |
| Msa0469120 | MtrunA17_Chr3g0079441 | 36.777 | 484 | 197 | 11 | 26 | 408 | 16 | 491 | 6.14e-93 | 289 |
| Msa0469120 | MtrunA17_Chr5g0425351 | 36.481 | 233 | 101 | 3 | 139 | 371 | 20 | 205 | 1.23e-41 | 146 |
| Msa0469120 | MtrunA17_Chr5g0425301 | 40.000 | 70 | 42 | 0 | 294 | 363 | 1 | 70 | 1.38e-11 | 60.1 |
| Msa0469120 | MtrunA17_Chr5g0425291 | 45.312 | 64 | 34 | 1 | 127 | 190 | 10 | 72 | 1.80e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 138 sgRNAs with CRISPR-Local
Find 335 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTATGCTCCATTCCATTT+TGG | 0.078300 | 3_3:+70845688 | None:intergenic |
| TTTCCTTTGGTTGGTGTTAT+TGG | 0.100245 | 3_3:-70844304 | Msa0469120:CDS |
| GATCCTCCAAGTCCATTTAT+TGG | 0.234600 | 3_3:-70845902 | Msa0469120:CDS |
| CATCTTCATGGGAAACATTC+AGG | 0.242720 | 3_3:-70847417 | Msa0469120:CDS |
| CTCTGCCATTAACTTTATAT+TGG | 0.245071 | 3_3:-70843989 | Msa0469120:three_prime_UTR |
| AATTTCCAATATAAAGTTAA+TGG | 0.250672 | 3_3:+70843984 | None:intergenic |
| GCTGCTCCCGGTTCCCAAAA+TGG | 0.255158 | 3_3:-70845702 | Msa0469120:CDS |
| ATATACACTTTGGGACTCTT+TGG | 0.258550 | 3_3:-70844111 | Msa0469120:CDS |
| TCAAGAGTTCCTCCAATAAA+TGG | 0.271631 | 3_3:+70845890 | None:intergenic |
| AGAGCGCCGAAGATGTTCTT+AGG | 0.277195 | 3_3:-70846569 | Msa0469120:CDS |
| TGCAAAGCATCCTGCCTTGC+TGG | 0.282128 | 3_3:-70845322 | Msa0469120:CDS |
| AGGATCTACCAACTTAGTTT+TGG | 0.303072 | 3_3:-70845130 | Msa0469120:CDS |
| AGGAACAACTATCTTCAATT+AGG | 0.303188 | 3_3:-70844236 | Msa0469120:intron |
| TGGAGTGGGGAAGAGTATAA+AGG | 0.336529 | 3_3:+70848693 | None:intergenic |
| CATGGTGGATTTAAAGTTAG+AGG | 0.345081 | 3_3:-70848319 | Msa0469120:CDS |
| ACGAATATTTCCGAACGATT+TGG | 0.348623 | 3_3:+70845223 | None:intergenic |
| GTCCATAACCATTTGCTAAC+TGG | 0.355159 | 3_3:+70846595 | None:intergenic |
| CATCCTCATTTCATTGAATA+CGG | 0.364130 | 3_3:-70848636 | Msa0469120:five_prime_UTR |
| TACCAGTTAGCAAATGGTTA+TGG | 0.364366 | 3_3:-70846597 | Msa0469120:CDS |
| CTTGGTGCTAGCATTCTTGA+TGG | 0.366232 | 3_3:-70848535 | Msa0469120:exon |
| TCAATGGTGGTTGGTGGATA+AGG | 0.368600 | 3_3:+70848908 | None:intergenic |
| CTCAAATAAAACATATAAGT+TGG | 0.376846 | 3_3:-70843909 | Msa0469120:three_prime_UTR |
| TTGGTAGCCTTGCTTGTAAT+AGG | 0.383961 | 3_3:+70845242 | None:intergenic |
| ATCACTTCTGGAGTATATTC+AGG | 0.384374 | 3_3:-70848462 | Msa0469120:intron |
| TAACTTTCATTATCATTAGT+TGG | 0.392223 | 3_3:+70848819 | None:intergenic |
| ATTGAAGAATGCAATGATAT+AGG | 0.393155 | 3_3:-70843964 | Msa0469120:three_prime_UTR |
| AAAAGGGAAACTTTGCTTGT+GGG | 0.393495 | 3_3:+70848733 | None:intergenic |
| GGAGGGTGGCTTGTTATTGA+AGG | 0.394104 | 3_3:-70848286 | Msa0469120:intron |
| AATTGGCAATGCAGATCCTT+TGG | 0.399729 | 3_3:-70845172 | Msa0469120:CDS |
| GTCTATAATGCAGTTTCCTT+TGG | 0.400560 | 3_3:-70844317 | Msa0469120:CDS |
| CTAACAGATTATCAAGACTT+TGG | 0.401986 | 3_3:-70844356 | Msa0469120:intron |
| ACAGGGATTCCCCATCTTCA+TGG | 0.411267 | 3_3:-70847429 | Msa0469120:CDS |
| AAGTCGGGAAGGTCTGTTGC+AGG | 0.412693 | 3_3:-70845031 | Msa0469120:CDS |
| CACTTTGGGACTCTTTGGAT+TGG | 0.416831 | 3_3:-70844106 | Msa0469120:CDS |
| TATCTTATCTAGATCTTCAA+TGG | 0.422642 | 3_3:+70848892 | None:intergenic |
| AATGACTTTGAAATGTAATC+TGG | 0.425615 | 3_3:+70845630 | None:intergenic |
| AGTGTATATATTCTGATTGT+TGG | 0.428231 | 3_3:+70844125 | None:intergenic |
| ATAATGCAGTTTCCTTTGGT+TGG | 0.429534 | 3_3:-70844313 | Msa0469120:CDS |
| TCTTTGGATTGGCTTTCACC+TGG | 0.431793 | 3_3:-70844095 | Msa0469120:CDS |
| CTTCCCCACTCCACAAGGTT+CGG | 0.434049 | 3_3:-70848683 | Msa0469120:five_prime_UTR |
| AATATGTATCTGCAGACAAT+GGG | 0.437341 | 3_3:-70847474 | Msa0469120:CDS |
| GGAGTGGGGAAGAGTATAAA+GGG | 0.438419 | 3_3:+70848694 | None:intergenic |
| ATAAATGGACTTGGAGGATC+AGG | 0.438577 | 3_3:+70845905 | None:intergenic |
| AAAGTTAGAGGAGTGAACTT+AGG | 0.438588 | 3_3:-70848307 | Msa0469120:CDS |
| TTATCATTAGTTGGACTTGA+AGG | 0.444952 | 3_3:+70848828 | None:intergenic |
| CAATCAGAATATATACACTT+TGG | 0.445062 | 3_3:-70844121 | Msa0469120:CDS |
| AATCAGAATATATACACTTT+GGG | 0.445440 | 3_3:-70844120 | Msa0469120:CDS |
| GAAATGTAATCTGGAGAAGT+TGG | 0.451317 | 3_3:+70845639 | None:intergenic |
| CGGGCCATTTGAATTGTTGA+AGG | 0.451769 | 3_3:+70845008 | None:intergenic |
| GTTAGAGGAGTGAACTTAGG+AGG | 0.452306 | 3_3:-70848304 | Msa0469120:CDS |
| GAAAATGCAGAATCCATCAT+AGG | 0.454866 | 3_3:+70848563 | None:intergenic |
| ATTGACCTTCATGCTGCTCC+CGG | 0.455176 | 3_3:-70845714 | Msa0469120:CDS |
| GAATGAATGTGACAGTTGAC+AGG | 0.461483 | 3_3:-70847447 | Msa0469120:CDS |
| TTTGAAGTGGAGGGGTTACA+TGG | 0.465385 | 3_3:-70848337 | Msa0469120:intron |
| TCAAATAAAACATATAAGTT+GGG | 0.466466 | 3_3:-70843908 | Msa0469120:three_prime_UTR |
| CAGGCCTTCAACAATTCAAA+TGG | 0.468996 | 3_3:-70845012 | Msa0469120:CDS |
| GATCTGCATTGCCAATTCTC+TGG | 0.470111 | 3_3:+70845178 | None:intergenic |
| TACAATACATATACAAAAGT+CGG | 0.470112 | 3_3:-70845047 | Msa0469120:CDS |
| GCAAAGCATCCTGCCTTGCT+GGG | 0.470714 | 3_3:-70845321 | Msa0469120:CDS |
| TTCTTTGTTAATATGAGTGC+TGG | 0.472804 | 3_3:-70845078 | Msa0469120:CDS |
| CTGAATGTTTCCCATGAAGA+TGG | 0.473464 | 3_3:+70847418 | None:intergenic |
| ATAAGTTGGGTTGATATTCA+AGG | 0.475715 | 3_3:-70843895 | Msa0469120:three_prime_UTR |
| CTTGTTTCTTTGAAGTGGAG+GGG | 0.480230 | 3_3:-70848345 | Msa0469120:intron |
| CTATCTTTATAGGCTACAAC+TGG | 0.482204 | 3_3:-70846717 | Msa0469120:intron |
| GTGATAATGTGCCAGAGAAT+TGG | 0.482707 | 3_3:-70845189 | Msa0469120:CDS |
| AGCAAGGCTACCAAATCGTT+CGG | 0.482834 | 3_3:-70845233 | Msa0469120:CDS |
| GTTTACCCTAAGAACATCTT+CGG | 0.484369 | 3_3:+70846563 | None:intergenic |
| GGAGATTACCAGTTAGCAAA+TGG | 0.489034 | 3_3:-70846603 | Msa0469120:CDS |
| GTTCCTCCAATAAATGGACT+TGG | 0.490192 | 3_3:+70845896 | None:intergenic |
| GCAGACTATCCAGGTGTACC+AGG | 0.492194 | 3_3:-70846681 | Msa0469120:CDS |
| GAAGGGAAAAGTGTCTCAAA+AGG | 0.492249 | 3_3:+70848716 | None:intergenic |
| TTGGTGCTAGCATTCTTGAT+GGG | 0.492911 | 3_3:-70848534 | Msa0469120:exon |
| TGAGGATACCGGTTGGGTGG+TGG | 0.493251 | 3_3:-70845940 | Msa0469120:CDS |
| TGAATGTTTCCCATGAAGAT+GGG | 0.498897 | 3_3:+70847419 | None:intergenic |
| ATGCAAATCCAAAACTAAGT+TGG | 0.500518 | 3_3:+70845122 | None:intergenic |
| GTGTATATATTCTGATTGTT+GGG | 0.500854 | 3_3:+70844126 | None:intergenic |
| AGCTCAATTCCCAGCAAGGC+AGG | 0.501113 | 3_3:+70845312 | None:intergenic |
| TCTAGATCTTCAATGGTGGT+TGG | 0.504632 | 3_3:+70848899 | None:intergenic |
| GAGCTTTATCAAGCCAACAT+AGG | 0.508387 | 3_3:-70845150 | Msa0469120:CDS |
| CCTCCAATAAATGGACTTGG+AGG | 0.508409 | 3_3:+70845899 | None:intergenic |
| TCATCCCACCCTGGTACACC+TGG | 0.509757 | 3_3:+70846672 | None:intergenic |
| CAGGGATTCCCCATCTTCAT+GGG | 0.509969 | 3_3:-70847428 | Msa0469120:CDS |
| AAAGCAATCCACCACCCAAC+CGG | 0.513130 | 3_3:+70845932 | None:intergenic |
| ATCTTCATGGGAAACATTCA+GGG | 0.514450 | 3_3:-70847416 | Msa0469120:intron |
| TACAATTATCATTTCAAATG+TGG | 0.515816 | 3_3:+70846641 | None:intergenic |
| CAGCTTACAGCAGACTATCC+AGG | 0.516035 | 3_3:-70846690 | Msa0469120:CDS |
| AGTATGCATAACAGCATAAG+TGG | 0.520175 | 3_3:+70843934 | None:intergenic |
| TTAATTTCCTATTACAAGCA+AGG | 0.520598 | 3_3:-70845249 | Msa0469120:CDS |
| TTAGAGGAGTGAACTTAGGA+GGG | 0.520834 | 3_3:-70848303 | Msa0469120:CDS |
| AGAACCGAACCTTGTGGAGT+GGG | 0.523986 | 3_3:+70848679 | None:intergenic |
| AAAGAAACTGTGCCAGCTGA+TGG | 0.527906 | 3_3:+70845279 | None:intergenic |
| AATAAATACTGTGAGGATAC+CGG | 0.529307 | 3_3:-70845951 | Msa0469120:CDS |
| AAGAACCGAACCTTGTGGAG+TGG | 0.530169 | 3_3:+70848678 | None:intergenic |
| AGATCTTCAATGGTGGTTGG+TGG | 0.532300 | 3_3:+70848902 | None:intergenic |
| ACAATACATATACAAAAGTC+GGG | 0.532332 | 3_3:-70845046 | Msa0469120:CDS |
| CAAAAGGGAAACTTTGCTTG+TGG | 0.541887 | 3_3:+70848732 | None:intergenic |
| TTCAAATTTCTATATGAACA+TGG | 0.547778 | 3_3:-70845974 | Msa0469120:CDS |
| CCTCCAAGTCCATTTATTGG+AGG | 0.547901 | 3_3:-70845899 | Msa0469120:CDS |
| GAGCATAGTGCAAGCAGAGA+TGG | 0.549175 | 3_3:-70845675 | Msa0469120:CDS |
| TGGGGAAGAGTATAAAGGGA+AGG | 0.552888 | 3_3:+70848698 | None:intergenic |
| CTAACTGGTAATCTCCATGT+AGG | 0.553851 | 3_3:+70846610 | None:intergenic |
| GAGCGCCGAAGATGTTCTTA+GGG | 0.556572 | 3_3:-70846568 | Msa0469120:intron |
| TAAGTTGGTAGATCCTATGT+TGG | 0.561236 | 3_3:+70845137 | None:intergenic |
| TAACAAAGAATGTGTCAAAG+AGG | 0.561592 | 3_3:+70845091 | None:intergenic |
| AAGAAGAGACGGAAGTAGGA+AGG | 0.562751 | 3_3:+70848856 | None:intergenic |
| AAATATGTATCTGCAGACAA+TGG | 0.568845 | 3_3:-70847475 | Msa0469120:CDS |
| GGGGAAGAGTATAAAGGGAA+GGG | 0.574583 | 3_3:+70848699 | None:intergenic |
| AAACCGTATTCAATGAAATG+AGG | 0.574859 | 3_3:+70848633 | None:intergenic |
| ATACTGTGAGGATACCGGTT+GGG | 0.576799 | 3_3:-70845946 | Msa0469120:CDS |
| TTGGCTTGATAAAGCTCCAA+AGG | 0.586731 | 3_3:+70845156 | None:intergenic |
| CAAAAGCTCAATTCCCAGCA+AGG | 0.598883 | 3_3:+70845308 | None:intergenic |
| TACATATACAAAAGTCGGGA+AGG | 0.598981 | 3_3:-70845042 | Msa0469120:CDS |
| ATTGTATCTAATAACCTACA+TGG | 0.601786 | 3_3:-70846624 | Msa0469120:CDS |
| GGGAACCGGGAGCAGCATGA+AGG | 0.601896 | 3_3:+70845709 | None:intergenic |
| AAGGGAAAAGTGTCTCAAAA+GGG | 0.604953 | 3_3:+70848717 | None:intergenic |
| ATACTCTTCCCCACTCCACA+AGG | 0.610207 | 3_3:-70848688 | Msa0469120:five_prime_UTR |
| TCCCGGTTCCCAAAATGGAA+TGG | 0.613131 | 3_3:-70845697 | Msa0469120:CDS |
| AAATAGCTATATTACAGTAG+AGG | 0.615992 | 3_3:-70845999 | Msa0469120:CDS |
| CTTATCTAGATCTTCAATGG+TGG | 0.624313 | 3_3:+70848895 | None:intergenic |
| GAGGAGTGAACTTAGGAGGG+TGG | 0.625009 | 3_3:-70848300 | Msa0469120:CDS |
| CTGTGAGGATACCGGTTGGG+TGG | 0.633143 | 3_3:-70845943 | Msa0469120:CDS |
| GAATGTTTCCCATGAAGATG+GGG | 0.636416 | 3_3:+70847420 | None:intergenic |
| CTATCCAGGTGTACCAGGGT+GGG | 0.637115 | 3_3:-70846676 | Msa0469120:CDS |
| GAACCGAACCTTGTGGAGTG+GGG | 0.644024 | 3_3:+70848680 | None:intergenic |
| AGACGGAAGTAGGAAGGACA+AGG | 0.649812 | 3_3:+70848862 | None:intergenic |
| GAAGTGGAGGGGTTACATGG+TGG | 0.650799 | 3_3:-70848334 | Msa0469120:intron |
| AATACTGTGAGGATACCGGT+TGG | 0.651527 | 3_3:-70845947 | Msa0469120:CDS |
| AGATTATCAAGACTTTGGAA+AGG | 0.657543 | 3_3:-70844351 | Msa0469120:CDS |
| AAAGTAAACAAGACAAAACC+AGG | 0.661016 | 3_3:+70844077 | None:intergenic |
| ACTATCCAGGTGTACCAGGG+TGG | 0.662557 | 3_3:-70846677 | Msa0469120:CDS |
| GGTCCAATAACACCAACCAA+AGG | 0.667032 | 3_3:+70844301 | None:intergenic |
| AATGAATGTGACAGTTGACA+GGG | 0.671114 | 3_3:-70847446 | Msa0469120:CDS |
| TATGTATCTGCAGACAATGG+GGG | 0.679750 | 3_3:-70847472 | Msa0469120:CDS |
| ATATGTATCTGCAGACAATG+GGG | 0.684552 | 3_3:-70847473 | Msa0469120:CDS |
| CAGACTATCCAGGTGTACCA+GGG | 0.695145 | 3_3:-70846680 | Msa0469120:CDS |
| AACATGGAATAAATACTGTG+AGG | 0.697922 | 3_3:-70845958 | Msa0469120:CDS |
| GCTGAATTATCATCCCACCC+TGG | 0.707594 | 3_3:+70846663 | None:intergenic |
| CGGAAGTAGGAAGGACAAGG+TGG | 0.734111 | 3_3:+70848865 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTGAATTTTTAATTTCT+AGG | - | chr3_3:70847185-70847204 | Msa0469120:intron | 10.0% |
| !! | ATTTGAGTAAATATTAAATG+TGG | - | chr3_3:70844623-70844642 | Msa0469120:intron | 15.0% |
| !! | ATAAATCAATACAAATAAGT+TGG | + | chr3_3:70846662-70846681 | None:intergenic | 15.0% |
| !!! | TTGTTTTTCAATATTATGTA+TGG | + | chr3_3:70846710-70846729 | None:intergenic | 15.0% |
| !! | AATTTCCAATATAAAGTTAA+TGG | + | chr3_3:70848806-70848825 | None:intergenic | 15.0% |
| !! | TCAAATAAAACATATAAGTT+GGG | - | chr3_3:70848879-70848898 | Msa0469120:five_prime_UTR | 15.0% |
| !! | TAACTTTCATTATCATTAGT+TGG | + | chr3_3:70843971-70843990 | None:intergenic | 20.0% |
| !! | AAATGAAACAAATGAGATAT+TGG | + | chr3_3:70844405-70844424 | None:intergenic | 20.0% |
| !! | ATGATATATGTACAAAATGT+AGG | - | chr3_3:70845251-70845270 | Msa0469120:CDS | 20.0% |
| !!! | GATTTGATTTTTTCAGATTA+AGG | - | chr3_3:70845456-70845475 | Msa0469120:intron | 20.0% |
| !!! | AAACAGCATTACATTTTTTA+TGG | + | chr3_3:70845908-70845927 | None:intergenic | 20.0% |
| !!! | TTAAAAGTCTAAGATCAATA+TGG | + | chr3_3:70846025-70846044 | None:intergenic | 20.0% |
| !! | TACAATTATCATTTCAAATG+TGG | + | chr3_3:70846149-70846168 | None:intergenic | 20.0% |
| !! | ATTATAACTTACTGAAAAGA+CGG | + | chr3_3:70846392-70846411 | None:intergenic | 20.0% |
| !! | TTCAAATTTCTATATGAACA+TGG | - | chr3_3:70846813-70846832 | Msa0469120:intron | 20.0% |
| !!! | TTTAATTTCTAGGTATGTTT+TGG | - | chr3_3:70847195-70847214 | Msa0469120:intron | 20.0% |
| !! | TTTGTAGAAGTTCTTATTAT+TGG | - | chr3_3:70847232-70847251 | Msa0469120:intron | 20.0% |
| !! | TTGTAGAAGTTCTTATTATT+GGG | - | chr3_3:70847233-70847252 | Msa0469120:intron | 20.0% |
| !! | TACAATACATATACAAAAGT+CGG | - | chr3_3:70847740-70847759 | Msa0469120:intron | 20.0% |
| !! | AATCAGAATATATACACTTT+GGG | - | chr3_3:70848667-70848686 | Msa0469120:five_prime_UTR | 20.0% |
| !! | CTCAAATAAAACATATAAGT+TGG | - | chr3_3:70848878-70848897 | Msa0469120:five_prime_UTR | 20.0% |
| ! | TATCTTATCTAGATCTTCAA+TGG | + | chr3_3:70843898-70843917 | None:intergenic | 25.0% |
| !! | AAACATTCTTTTTCCTATGA+TGG | - | chr3_3:70844211-70844230 | Msa0469120:intron | 25.0% |
| ! | TGACTAACAAAAAACACATT+CGG | + | chr3_3:70844712-70844731 | None:intergenic | 25.0% |
| !!! | GTGTTTTTTGTTAGTCAATT+TGG | - | chr3_3:70844715-70844734 | Msa0469120:intron | 25.0% |
| !!! | TACATGTTTTCTGGTTAATT+TGG | - | chr3_3:70844744-70844763 | Msa0469120:intron | 25.0% |
| !!! | TAGAAAAGTTGGTAGAAAAT+AGG | - | chr3_3:70844819-70844838 | Msa0469120:intron | 25.0% |
| ! | GTTCTATCAAAAACCATATT+TGG | + | chr3_3:70845001-70845020 | None:intergenic | 25.0% |
| ! | TACTAACAGAAGATACATTT+AGG | - | chr3_3:70845133-70845152 | Msa0469120:CDS | 25.0% |
| ! | ACTAACAGAAGATACATTTA+GGG | - | chr3_3:70845134-70845153 | Msa0469120:CDS | 25.0% |
| ! | TATATGTACAAAATGTAGGA+TGG | - | chr3_3:70845255-70845274 | Msa0469120:CDS | 25.0% |
| ! | ATATGTACAAAATGTAGGAT+GGG | - | chr3_3:70845256-70845275 | Msa0469120:CDS | 25.0% |
| !! | TTCAGAAATTCAACTGATTT+AGG | + | chr3_3:70845543-70845562 | None:intergenic | 25.0% |
| ! | TAAGCGTAATGAGAAAAATA+AGG | - | chr3_3:70845803-70845822 | Msa0469120:intron | 25.0% |
| !! | TATATGAAGTTGCTTTACTA+TGG | - | chr3_3:70845995-70846014 | Msa0469120:CDS | 25.0% |
| ! | ATTGTATCTAATAACCTACA+TGG | - | chr3_3:70846163-70846182 | Msa0469120:intron | 25.0% |
| ! | ATGACTATCACATTGAAAAT+CGG | - | chr3_3:70846330-70846349 | Msa0469120:intron | 25.0% |
| ! | AATAAGATGAAAACAACTTG+TGG | - | chr3_3:70846514-70846533 | Msa0469120:intron | 25.0% |
| !! | AATCAATACAAATAAGTTGG+AGG | + | chr3_3:70846659-70846678 | None:intergenic | 25.0% |
| ! | AAATAGCTATATTACAGTAG+AGG | - | chr3_3:70846788-70846807 | Msa0469120:intron | 25.0% |
| !! | TCTAGATAATGCATTTTCAT+GGG | - | chr3_3:70846923-70846942 | Msa0469120:intron | 25.0% |
| !!! | AAACTTCTTTTTTCCTTTTG+AGG | - | chr3_3:70847003-70847022 | Msa0469120:intron | 25.0% |
| !!! | AATGACTTTGAAATGTAATC+TGG | + | chr3_3:70847160-70847179 | None:intergenic | 25.0% |
| ! | ATTGATATTCTTGAGTACAT+GGG | + | chr3_3:70847268-70847287 | None:intergenic | 25.0% |
| ! | AATTGATATTCTTGAGTACA+TGG | + | chr3_3:70847269-70847288 | None:intergenic | 25.0% |
| ! | TACTCAAGAATATCAATTAG+AGG | - | chr3_3:70847271-70847290 | Msa0469120:intron | 25.0% |
| ! | ACTCAAGAATATCAATTAGA+GGG | - | chr3_3:70847272-70847291 | Msa0469120:intron | 25.0% |
| ! | TTAATTTCCTATTACAAGCA+AGG | - | chr3_3:70847538-70847557 | Msa0469120:intron | 25.0% |
| ! | ACAATACATATACAAAAGTC+GGG | - | chr3_3:70847741-70847760 | Msa0469120:intron | 25.0% |
| ! | TCTTACCAATAAAAATTAGC+GGG | + | chr3_3:70847801-70847820 | None:intergenic | 25.0% |
| ! | GTCTTACCAATAAAAATTAG+CGG | + | chr3_3:70847802-70847821 | None:intergenic | 25.0% |
| ! | TTCAGATAATTATGCATTCA+AGG | + | chr3_3:70847900-70847919 | None:intergenic | 25.0% |
| !! | ATCAGACCATTTTCAATTTA+TGG | + | chr3_3:70847973-70847992 | None:intergenic | 25.0% |
| ! | CAAAGTGATAAAAAAACAGT+TGG | + | chr3_3:70848190-70848209 | None:intergenic | 25.0% |
| ! | CAATTTGAATCTCAAATATC+AGG | - | chr3_3:70848371-70848390 | Msa0469120:intron | 25.0% |
| !! | AAAGTCTTGATAATCTGTTA+GGG | + | chr3_3:70848432-70848451 | None:intergenic | 25.0% |
| !!! | AATTACATGTTTGATTTTGC+AGG | - | chr3_3:70848631-70848650 | Msa0469120:five_prime_UTR | 25.0% |
| !!! | ATTACATGTTTGATTTTGCA+GGG | - | chr3_3:70848632-70848651 | Msa0469120:five_prime_UTR | 25.0% |
| ! | GTGTATATATTCTGATTGTT+GGG | + | chr3_3:70848664-70848683 | None:intergenic | 25.0% |
| ! | AGTGTATATATTCTGATTGT+TGG | + | chr3_3:70848665-70848684 | None:intergenic | 25.0% |
| ! | CAATCAGAATATATACACTT+TGG | - | chr3_3:70848666-70848685 | Msa0469120:five_prime_UTR | 25.0% |
| !! | ACAACTTTTACTTAGATTGA+AGG | - | chr3_3:70848738-70848757 | Msa0469120:five_prime_UTR | 25.0% |
| ! | ATTGAAGAATGCAATGATAT+AGG | - | chr3_3:70848823-70848842 | Msa0469120:five_prime_UTR | 25.0% |
| TTATCATTAGTTGGACTTGA+AGG | + | chr3_3:70843962-70843981 | None:intergenic | 30.0% | |
| CATCCTCATTTCATTGAATA+CGG | - | chr3_3:70844151-70844170 | Msa0469120:intron | 30.0% | |
| AAACCGTATTCAATGAAATG+AGG | + | chr3_3:70844157-70844176 | None:intergenic | 30.0% | |
| TAAAAAAATGCATGCCCATT+TGG | + | chr3_3:70844290-70844309 | None:intergenic | 30.0% | |
| !!! | TCTTGTTTTTTCATCACTTC+TGG | - | chr3_3:70844313-70844332 | Msa0469120:CDS | 30.0% |
| ! | TTGTTCTTGTTTCTTTGAAG+TGG | - | chr3_3:70844437-70844456 | Msa0469120:intron | 30.0% |
| ! | ATCAAACCTTCTTTGTTTGA+TGG | - | chr3_3:70844528-70844547 | Msa0469120:intron | 30.0% |
| AGTATCTTGCTGAAAATTGA+GGG | + | chr3_3:70844598-70844617 | None:intergenic | 30.0% | |
| AAGTATCTTGCTGAAAATTG+AGG | + | chr3_3:70844599-70844618 | None:intergenic | 30.0% | |
| GACTAACAAAAAACACATTC+GGG | + | chr3_3:70844711-70844730 | None:intergenic | 30.0% | |
| TTAACCAGAAAACATGTAAG+AGG | + | chr3_3:70844742-70844761 | None:intergenic | 30.0% | |
| ! | TCTACCAACTTTTCTACTAT+AGG | + | chr3_3:70844815-70844834 | None:intergenic | 30.0% |
| TTGATCTACTCTTCTTACAA+CGG | + | chr3_3:70844885-70844904 | None:intergenic | 30.0% | |
| TGTAAGAAGAGTAGATCAAA+TGG | - | chr3_3:70844886-70844905 | Msa0469120:intron | 30.0% | |
| ! | GTTTCTCTAATGGTTTTCTT+AGG | + | chr3_3:70844944-70844963 | None:intergenic | 30.0% |
| ! | TTTTCGAATGGTTTCTCTAA+TGG | + | chr3_3:70844954-70844973 | None:intergenic | 30.0% |
| AACCATTCGAAAAGATTTAG+AGG | - | chr3_3:70844961-70844980 | Msa0469120:intron | 30.0% | |
| ! | TGGTTTTTGATAGAACACTA+TGG | - | chr3_3:70845005-70845024 | Msa0469120:CDS | 30.0% |
| TTCGTGCATAAATTGACTAA+GGG | + | chr3_3:70845111-70845130 | None:intergenic | 30.0% | |
| TTTCGTGCATAAATTGACTA+AGG | + | chr3_3:70845112-70845131 | None:intergenic | 30.0% | |
| AAATATGTATCTGCAGACAA+TGG | - | chr3_3:70845312-70845331 | Msa0469120:CDS | 30.0% | |
| AATATGTATCTGCAGACAAT+GGG | - | chr3_3:70845313-70845332 | Msa0469120:CDS | 30.0% | |
| TGCTTACTTTATCCATTTCA+CGG | - | chr3_3:70845510-70845529 | Msa0469120:intron | 30.0% | |
| GTTCACATCAAGATAAAGAA+TGG | - | chr3_3:70845825-70845844 | Msa0469120:intron | 30.0% | |
| GATTTATAGAGAGACTAACA+TGG | + | chr3_3:70845943-70845962 | None:intergenic | 30.0% | |
| GCTTATACCACTATCTTTAT+AGG | - | chr3_3:70846060-70846079 | Msa0469120:intron | 30.0% | |
| GTTATCTACTGTCACAATTA+AGG | - | chr3_3:70846276-70846295 | Msa0469120:intron | 30.0% | |
| ATCACATTGAAAATCGGTAA+AGG | - | chr3_3:70846336-70846355 | Msa0469120:intron | 30.0% | |
| ATACTATTTGGGAAAGCTTA+TGG | + | chr3_3:70846558-70846577 | None:intergenic | 30.0% | |
| AAGCACTTGTGATACTATTT+GGG | + | chr3_3:70846569-70846588 | None:intergenic | 30.0% | |
| TAAGCACTTGTGATACTATT+TGG | + | chr3_3:70846570-70846589 | None:intergenic | 30.0% | |
| ! | GGTTTATTTGAGTTTACCTA+CGG | + | chr3_3:70846596-70846615 | None:intergenic | 30.0% |
| GAAGTAAACAGACAAATTTG+TGG | + | chr3_3:70846637-70846656 | None:intergenic | 30.0% | |
| AACATGGAATAAATACTGTG+AGG | - | chr3_3:70846829-70846848 | Msa0469120:intron | 30.0% | |
| AATAAATACTGTGAGGATAC+CGG | - | chr3_3:70846836-70846855 | Msa0469120:intron | 30.0% | |
| ! | CTCTAGATAATGCATTTTCA+TGG | - | chr3_3:70846922-70846941 | Msa0469120:intron | 30.0% |
| AATTAAGCACATTCCTCAAA+AGG | + | chr3_3:70847019-70847038 | None:intergenic | 30.0% | |
| ATCACAAAGTCTATTCTGTA+AGG | + | chr3_3:70847436-70847455 | None:intergenic | 30.0% | |
| ATGCAAATCCAAAACTAAGT+TGG | + | chr3_3:70847668-70847687 | None:intergenic | 30.0% | |
| TAACAAAGAATGTGTCAAAG+AGG | + | chr3_3:70847699-70847718 | None:intergenic | 30.0% | |
| TTCTTTGTTAATATGAGTGC+TGG | - | chr3_3:70847709-70847728 | Msa0469120:intron | 30.0% | |
| TAGTGTCAAACAAAACTGAA+AGG | + | chr3_3:70847831-70847850 | None:intergenic | 30.0% | |
| !! | GATTTTCATGAAGTTGATTG+AGG | + | chr3_3:70847878-70847897 | None:intergenic | 30.0% |
| ! | TGTTTTTCTTCTCCTTAAAG+TGG | - | chr3_3:70847947-70847966 | Msa0469120:intron | 30.0% |
| ! | TTCAATTTATGGCCACTTTA+AGG | + | chr3_3:70847962-70847981 | None:intergenic | 30.0% |
| AAGTGGCCATAAATTGAAAA+TGG | - | chr3_3:70847964-70847983 | Msa0469120:intron | 30.0% | |
| ACACAACAATCTGTAACTAT+TGG | + | chr3_3:70848076-70848095 | None:intergenic | 30.0% | |
| !! | GAATGTGCTTTTTATTTGAG+AGG | - | chr3_3:70848141-70848160 | Msa0469120:intron | 30.0% |
| ! | CAAAGTCTTGATAATCTGTT+AGG | + | chr3_3:70848433-70848452 | None:intergenic | 30.0% |
| CTAACAGATTATCAAGACTT+TGG | - | chr3_3:70848431-70848450 | Msa0469120:intron | 30.0% | |
| ! | AGATTATCAAGACTTTGGAA+AGG | - | chr3_3:70848436-70848455 | Msa0469120:intron | 30.0% |
| ATTGGACCTTAAAAAATGAC+AGG | - | chr3_3:70848501-70848520 | Msa0469120:CDS | 30.0% | |
| TTGGACCTTAAAAAATGACA+GGG | - | chr3_3:70848502-70848521 | Msa0469120:CDS | 30.0% | |
| AGGAACAACTATCTTCAATT+AGG | - | chr3_3:70848551-70848570 | Msa0469120:five_prime_UTR | 30.0% | |
| CAACTATCTTCAATTAGGTA+AGG | - | chr3_3:70848556-70848575 | Msa0469120:five_prime_UTR | 30.0% | |
| TTAGGTAAGGACTATAGATT+TGG | - | chr3_3:70848569-70848588 | Msa0469120:intron | 30.0% | |
| AAAGTAAACAAGACAAAACC+AGG | + | chr3_3:70848713-70848732 | None:intergenic | 30.0% | |
| CTCTGCCATTAACTTTATAT+TGG | - | chr3_3:70848798-70848817 | Msa0469120:five_prime_UTR | 30.0% | |
| !! | ATAAGTTGGGTTGATATTCA+AGG | - | chr3_3:70848892-70848911 | Msa0469120:five_prime_UTR | 30.0% |
| CTTATCTAGATCTTCAATGG+TGG | + | chr3_3:70843895-70843914 | None:intergenic | 35.0% | |
| TGAAGGAGAAAAAGAAGAGA+CGG | + | chr3_3:70843945-70843964 | None:intergenic | 35.0% | |
| AAAAGGGAAACTTTGCTTGT+GGG | + | chr3_3:70844057-70844076 | None:intergenic | 35.0% | |
| !! | AAGGGAAAAGTGTCTCAAAA+GGG | + | chr3_3:70844073-70844092 | None:intergenic | 35.0% |
| TAAAAAAGAACCGAACCTTG+TGG | + | chr3_3:70844117-70844136 | None:intergenic | 35.0% | |
| GAAAATGCAGAATCCATCAT+AGG | + | chr3_3:70844227-70844246 | None:intergenic | 35.0% | |
| ! | ATTCTGCATTTTCGCTTTCT+TGG | - | chr3_3:70844234-70844253 | Msa0469120:intron | 35.0% |
| !!! | TGGGACTTGTTTTTACCAAA+TGG | - | chr3_3:70844272-70844291 | Msa0469120:CDS | 35.0% |
| !!! | GGGACTTGTTTTTACCAAAT+GGG | - | chr3_3:70844273-70844292 | Msa0469120:CDS | 35.0% |
| !! | ATCACTTCTGGAGTATATTC+AGG | - | chr3_3:70844325-70844344 | Msa0469120:CDS | 35.0% |
| !! | TTCTGGAGTATATTCAGGTA+AGG | - | chr3_3:70844330-70844349 | Msa0469120:CDS | 35.0% |
| !! | TTCTTGTTTCTTTGAAGTGG+AGG | - | chr3_3:70844440-70844459 | Msa0469120:intron | 35.0% |
| !! | TCTTGTTTCTTTGAAGTGGA+GGG | - | chr3_3:70844441-70844460 | Msa0469120:intron | 35.0% |
| !! | CATGGTGGATTTAAAGTTAG+AGG | - | chr3_3:70844468-70844487 | Msa0469120:intron | 35.0% |
| AAAGTTAGAGGAGTGAACTT+AGG | - | chr3_3:70844480-70844499 | Msa0469120:intron | 35.0% | |
| AGCACCTATAGTAGAAAAGT+TGG | - | chr3_3:70844808-70844827 | Msa0469120:intron | 35.0% | |
| TGGTAGAAAATAGGCTTAGA+TGG | - | chr3_3:70844828-70844847 | Msa0469120:intron | 35.0% | |
| AAGAAGAGTAGATCAAATGG+AGG | - | chr3_3:70844889-70844908 | Msa0469120:intron | 35.0% | |
| ! | GACCTCTAAATCTTTTCGAA+TGG | + | chr3_3:70844966-70844985 | None:intergenic | 35.0% |
| AGATTTAGAGGTCAATGAGT+TGG | - | chr3_3:70844973-70844992 | Msa0469120:intron | 35.0% | |
| ! | CAATGAGTTGGATCCAAATA+TGG | - | chr3_3:70844985-70845004 | Msa0469120:intron | 35.0% |
| ! | TGGGACTAAATTGACTTATC+TGG | - | chr3_3:70845213-70845232 | Msa0469120:CDS | 35.0% |
| ATATGTATCTGCAGACAATG+GGG | - | chr3_3:70845314-70845333 | Msa0469120:CDS | 35.0% | |
| AATGAATGTGACAGTTGACA+GGG | - | chr3_3:70845341-70845360 | Msa0469120:intron | 35.0% | |
| TGAATGTTTCCCATGAAGAT+GGG | + | chr3_3:70845371-70845390 | None:intergenic | 35.0% | |
| ATCTTCATGGGAAACATTCA+GGG | - | chr3_3:70845371-70845390 | Msa0469120:intron | 35.0% | |
| ATCGTAGCAACATATAATGC+TGG | + | chr3_3:70845439-70845458 | None:intergenic | 35.0% | |
| GATAAAGTAAGCACAGGAAA+TGG | + | chr3_3:70845503-70845522 | None:intergenic | 35.0% | |
| GAAATGGATAAAGTAAGCAC+AGG | + | chr3_3:70845509-70845528 | None:intergenic | 35.0% | |
| TTAGGTATGAAACCGTGAAA+TGG | + | chr3_3:70845525-70845544 | None:intergenic | 35.0% | |
| TTTCAATTCCGTACCAATCA+AGG | - | chr3_3:70845699-70845718 | Msa0469120:CDS | 35.0% | |
| AGGATAAATACCTGCAGATA+GGG | + | chr3_3:70845852-70845871 | None:intergenic | 35.0% | |
| AAGGATAAATACCTGCAGAT+AGG | + | chr3_3:70845853-70845872 | None:intergenic | 35.0% | |
| CCAATTTAGCAGAAAGCAAA+AGG | + | chr3_3:70845872-70845891 | None:intergenic | 35.0% | |
| ! | CCTTTTGCTTTCTGCTAAAT+TGG | - | chr3_3:70845869-70845888 | Msa0469120:CDS | 35.0% |
| TTATAGAGAGACTAACATGG+TGG | + | chr3_3:70845940-70845959 | None:intergenic | 35.0% | |
| GTTGTAGCCTATAAAGATAG+TGG | + | chr3_3:70846070-70846089 | None:intergenic | 35.0% | |
| CTATCTTTATAGGCTACAAC+TGG | - | chr3_3:70846070-70846089 | Msa0469120:intron | 35.0% | |
| TACCAGTTAGCAAATGGTTA+TGG | - | chr3_3:70846190-70846209 | Msa0469120:intron | 35.0% | |
| GTTTACCCTAAGAACATCTT+CGG | + | chr3_3:70846227-70846246 | None:intergenic | 35.0% | |
| ! | TGTCACAATTAAGGCTTGTT+AGG | - | chr3_3:70846285-70846304 | Msa0469120:intron | 35.0% |
| ! | ATCTGTTTTCAAAGCAATCC+TGG | - | chr3_3:70846410-70846429 | Msa0469120:intron | 35.0% |
| CTTACTTTCAAAAACTCTCC+AGG | + | chr3_3:70846431-70846450 | None:intergenic | 35.0% | |
| !! | GCTGTTTTCATAAGCTATAC+TGG | - | chr3_3:70846479-70846498 | Msa0469120:intron | 35.0% |
| AAGCTATACTGGAGAGTTTA+TGG | - | chr3_3:70846490-70846509 | Msa0469120:intron | 35.0% | |
| GACAAATTTGTGGAGACTTA+GGG | + | chr3_3:70846627-70846646 | None:intergenic | 35.0% | |
| AGACAAATTTGTGGAGACTT+AGG | + | chr3_3:70846628-70846647 | None:intergenic | 35.0% | |
| AGAAAGCGGAACAATTAACT+AGG | + | chr3_3:70846750-70846769 | None:intergenic | 35.0% | |
| TCAAGAGTTCCTCCAATAAA+TGG | + | chr3_3:70846900-70846919 | None:intergenic | 35.0% | |
| TTTCTCTGTATTTATCACCC+AGG | - | chr3_3:70846961-70846980 | Msa0469120:intron | 35.0% | |
| TTCTCTGTATTTATCACCCA+GGG | - | chr3_3:70846962-70846981 | Msa0469120:intron | 35.0% | |
| TTATCACCCAGGGTTTATTA+CGG | - | chr3_3:70846972-70846991 | Msa0469120:intron | 35.0% | |
| ! | ACTATGCTCCATTCCATTTT+GGG | + | chr3_3:70847101-70847120 | None:intergenic | 35.0% |
| GAAATGTAATCTGGAGAAGT+TGG | + | chr3_3:70847151-70847170 | None:intergenic | 35.0% | |
| ACGAATATTTCCGAACGATT+TGG | + | chr3_3:70847567-70847586 | None:intergenic | 35.0% | |
| !! | TAAGTTGGTAGATCCTATGT+TGG | + | chr3_3:70847653-70847672 | None:intergenic | 35.0% |
| ! | AGGATCTACCAACTTAGTTT+TGG | - | chr3_3:70847657-70847676 | Msa0469120:intron | 35.0% |
| TACATATACAAAAGTCGGGA+AGG | - | chr3_3:70847745-70847764 | Msa0469120:intron | 35.0% | |
| ! | AATGGCCCGCTAATTTTTAT+TGG | - | chr3_3:70847793-70847812 | Msa0469120:intron | 35.0% |
| AAATGGTCTGATTTCAGACA+TGG | - | chr3_3:70847981-70848000 | Msa0469120:intron | 35.0% | |
| AACAGTATCTAATGACACAC+AGG | - | chr3_3:70848010-70848029 | Msa0469120:intron | 35.0% | |
| AATCTCAAATATCAGGAGAG+TGG | - | chr3_3:70848378-70848397 | Msa0469120:intron | 35.0% | |
| ATCTCAAATATCAGGAGAGT+GGG | - | chr3_3:70848379-70848398 | Msa0469120:intron | 35.0% | |
| GTCTATAATGCAGTTTCCTT+TGG | - | chr3_3:70848470-70848489 | Msa0469120:CDS | 35.0% | |
| ATAATGCAGTTTCCTTTGGT+TGG | - | chr3_3:70848474-70848493 | Msa0469120:CDS | 35.0% | |
| !! | TTTCCTTTGGTTGGTGTTAT+TGG | - | chr3_3:70848483-70848502 | Msa0469120:CDS | 35.0% |
| ! | GGGATTTTGAATGGAACATT+AGG | - | chr3_3:70848531-70848550 | Msa0469120:exon | 35.0% |
| !! | ATATACACTTTGGGACTCTT+TGG | - | chr3_3:70848676-70848695 | Msa0469120:five_prime_UTR | 35.0% |
| AGTATGCATAACAGCATAAG+TGG | + | chr3_3:70848856-70848875 | None:intergenic | 35.0% | |
| TCTAGATCTTCAATGGTGGT+TGG | + | chr3_3:70843891-70843910 | None:intergenic | 40.0% | |
| GAAAAAGAAGAGACGGAAGT+AGG | + | chr3_3:70843938-70843957 | None:intergenic | 40.0% | |
| CAAAAGGGAAACTTTGCTTG+TGG | + | chr3_3:70844058-70844077 | None:intergenic | 40.0% | |
| !! | GAAGGGAAAAGTGTCTCAAA+AGG | + | chr3_3:70844074-70844093 | None:intergenic | 40.0% |
| !! | TTGGTGCTAGCATTCTTGAT+GGG | - | chr3_3:70844253-70844272 | Msa0469120:CDS | 40.0% |
| !! | CTTGTTTCTTTGAAGTGGAG+GGG | - | chr3_3:70844442-70844461 | Msa0469120:intron | 40.0% |
| TTAGAGGAGTGAACTTAGGA+GGG | - | chr3_3:70844484-70844503 | Msa0469120:intron | 40.0% | |
| GCAATGCCATCAAACAAAGA+AGG | + | chr3_3:70844537-70844556 | None:intergenic | 40.0% | |
| ! | TTGTTTGATGGCATTGCCAA+TGG | - | chr3_3:70844540-70844559 | Msa0469120:intron | 40.0% |
| ! | TGGTCCTCTTACATGTTTTC+TGG | - | chr3_3:70844735-70844754 | Msa0469120:intron | 40.0% |
| TTCCCTTAGAAAAGAGTGAG+TGG | - | chr3_3:70844781-70844800 | Msa0469120:intron | 40.0% | |
| TCCCTTAGAAAAGAGTGAGT+GGG | - | chr3_3:70844782-70844801 | Msa0469120:intron | 40.0% | |
| AGTCAGGTTAAAAGAGGTAG+AGG | - | chr3_3:70844914-70844933 | Msa0469120:intron | 40.0% | |
| !! | GGTGGTGTCATTATAATCTC+TGG | + | chr3_3:70845183-70845202 | None:intergenic | 40.0% |
| TATGTATCTGCAGACAATGG+GGG | - | chr3_3:70845315-70845334 | Msa0469120:CDS | 40.0% | |
| GAATGAATGTGACAGTTGAC+AGG | - | chr3_3:70845340-70845359 | Msa0469120:intron | 40.0% | |
| GAATGTTTCCCATGAAGATG+GGG | + | chr3_3:70845370-70845389 | None:intergenic | 40.0% | |
| CTGAATGTTTCCCATGAAGA+TGG | + | chr3_3:70845372-70845391 | None:intergenic | 40.0% | |
| CATCTTCATGGGAAACATTC+AGG | - | chr3_3:70845370-70845389 | Msa0469120:intron | 40.0% | |
| TGTAAGAAATGGGCCTTGAT+TGG | + | chr3_3:70845715-70845734 | None:intergenic | 40.0% | |
| CACCGTCACATGTAAGAAAT+GGG | + | chr3_3:70845725-70845744 | None:intergenic | 40.0% | |
| TCAAATGTCTCAGACGTTGA+AGG | + | chr3_3:70845780-70845799 | None:intergenic | 40.0% | |
| CTAACTGGTAATCTCCATGT+AGG | + | chr3_3:70846180-70846199 | None:intergenic | 40.0% | |
| GGAGATTACCAGTTAGCAAA+TGG | - | chr3_3:70846184-70846203 | Msa0469120:intron | 40.0% | |
| ! | GTCCATAACCATTTGCTAAC+TGG | + | chr3_3:70846195-70846214 | None:intergenic | 40.0% |
| ! | ATAAATGGACTTGGAGGATC+AGG | + | chr3_3:70846885-70846904 | None:intergenic | 40.0% |
| GATCCTCCAAGTCCATTTAT+TGG | - | chr3_3:70846885-70846904 | Msa0469120:intron | 40.0% | |
| ! | GTTCCTCCAATAAATGGACT+TGG | + | chr3_3:70846894-70846913 | None:intergenic | 40.0% |
| ! | CACTATGCTCCATTCCATTT+TGG | + | chr3_3:70847102-70847121 | None:intergenic | 40.0% |
| CTATTCTGTAAGGTCGACAA+AGG | + | chr3_3:70847426-70847445 | None:intergenic | 40.0% | |
| ! | CTTTTGAATGAACCATCAGC+TGG | - | chr3_3:70847496-70847515 | Msa0469120:CDS | 40.0% |
| ! | TTGGTAGCCTTGCTTGTAAT+AGG | + | chr3_3:70847548-70847567 | None:intergenic | 40.0% |
| ! | GTGATAATGTGCCAGAGAAT+TGG | - | chr3_3:70847598-70847617 | Msa0469120:intron | 40.0% |
| AATTGGCAATGCAGATCCTT+TGG | - | chr3_3:70847615-70847634 | Msa0469120:intron | 40.0% | |
| ! | TTGGCTTGATAAAGCTCCAA+AGG | + | chr3_3:70847634-70847653 | None:intergenic | 40.0% |
| ! | GAGCTTTATCAAGCCAACAT+AGG | - | chr3_3:70847637-70847656 | Msa0469120:intron | 40.0% |
| CAGGCCTTCAACAATTCAAA+TGG | - | chr3_3:70847775-70847794 | Msa0469120:intron | 40.0% | |
| ! | AGTCATTTCAAGTCGTGTCT+CGG | - | chr3_3:70848033-70848052 | Msa0469120:intron | 40.0% |
| !!! | GTGCTCCCTGTCATTTTTTA+AGG | + | chr3_3:70848510-70848529 | None:intergenic | 40.0% |
| ! | TAAAAAATGACAGGGAGCAC+TGG | - | chr3_3:70848510-70848529 | Msa0469120:CDS | 40.0% |
| !! | AAAAAATGACAGGGAGCACT+GGG | - | chr3_3:70848511-70848530 | Msa0469120:CDS | 40.0% |
| GGTAAGGACTATAGATTTGG+TGG | - | chr3_3:70848572-70848591 | Msa0469120:intron | 40.0% | |
| !! | TCAATGGTGGTTGGTGGATA+AGG | + | chr3_3:70843882-70843901 | None:intergenic | 45.0% |
| AGATCTTCAATGGTGGTTGG+TGG | + | chr3_3:70843888-70843907 | None:intergenic | 45.0% | |
| AAGAAGAGACGGAAGTAGGA+AGG | + | chr3_3:70843934-70843953 | None:intergenic | 45.0% | |
| ! | GGGGAAGAGTATAAAGGGAA+GGG | + | chr3_3:70844091-70844110 | None:intergenic | 45.0% |
| ! | TGGGGAAGAGTATAAAGGGA+AGG | + | chr3_3:70844092-70844111 | None:intergenic | 45.0% |
| ! | GGAGTGGGGAAGAGTATAAA+GGG | + | chr3_3:70844096-70844115 | None:intergenic | 45.0% |
| ! | TGGAGTGGGGAAGAGTATAA+AGG | + | chr3_3:70844097-70844116 | None:intergenic | 45.0% |
| !! | CTTGGTGCTAGCATTCTTGA+TGG | - | chr3_3:70844252-70844271 | Msa0469120:CDS | 45.0% |
| ! | TTTGAAGTGGAGGGGTTACA+TGG | - | chr3_3:70844450-70844469 | Msa0469120:intron | 45.0% |
| GTTAGAGGAGTGAACTTAGG+AGG | - | chr3_3:70844483-70844502 | Msa0469120:intron | 45.0% | |
| !! | GGTGGCTTGTTATTGAAGGT+TGG | - | chr3_3:70844505-70844524 | Msa0469120:intron | 45.0% |
| ACTCACAAGCATGTCTCCAT+TGG | + | chr3_3:70844559-70844578 | None:intergenic | 45.0% | |
| TCTAAGGGAAGACACACATG+AGG | + | chr3_3:70844771-70844790 | None:intergenic | 45.0% | |
| ! | CCCCACTCACTCTTTTCTAA+GGG | + | chr3_3:70844786-70844805 | None:intergenic | 45.0% |
| CCCTTAGAAAAGAGTGAGTG+GGG | - | chr3_3:70844783-70844802 | Msa0469120:intron | 45.0% | |
| CCTTAGAAAAGAGTGAGTGG+GGG | - | chr3_3:70844784-70844803 | Msa0469120:intron | 45.0% | |
| AGATCAAATGGAGGAGAGTC+AGG | - | chr3_3:70844898-70844917 | Msa0469120:intron | 45.0% | |
| GAGGAGAGTCAGGTTAAAAG+AGG | - | chr3_3:70844908-70844927 | Msa0469120:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr3_3:70845054-70845073 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr3_3:70845055-70845074 | None:intergenic | 45.0% |
| CCACAACTGCAACAGGAAAA+AGG | + | chr3_3:70845661-70845680 | None:intergenic | 45.0% | |
| ! | CCTTTTTCCTGTTGCAGTTG+TGG | - | chr3_3:70845658-70845677 | Msa0469120:CDS | 45.0% |
| ATACTCTCCACAACTGCAAC+AGG | + | chr3_3:70845668-70845687 | None:intergenic | 45.0% | |
| GAAATGGGCCTTGATTGGTA+CGG | + | chr3_3:70845710-70845729 | None:intergenic | 45.0% | |
| GGCCCATTTCTTACATGTGA+CGG | - | chr3_3:70845720-70845739 | Msa0469120:CDS | 45.0% | |
| CCACCGTCACATGTAAGAAA+TGG | + | chr3_3:70845726-70845745 | None:intergenic | 45.0% | |
| CCATTTCTTACATGTGACGG+TGG | - | chr3_3:70845723-70845742 | Msa0469120:CDS | 45.0% | |
| TTTCTTACATGTGACGGTGG+AGG | - | chr3_3:70845726-70845745 | Msa0469120:CDS | 45.0% | |
| AAAGAATGGACCCTATCTGC+AGG | - | chr3_3:70845839-70845858 | Msa0469120:intron | 45.0% | |
| TCACAAGTGCTTATGTCCGT+AGG | - | chr3_3:70846577-70846596 | Msa0469120:CDS | 45.0% | |
| ATTTGTGGAGACTTAGGGCT+TGG | + | chr3_3:70846622-70846641 | None:intergenic | 45.0% | |
| GTCTCTGCAGTTACAGAAAG+CGG | + | chr3_3:70846764-70846783 | None:intergenic | 45.0% | |
| AATACTGTGAGGATACCGGT+TGG | - | chr3_3:70846840-70846859 | Msa0469120:intron | 45.0% | |
| ! | ATACTGTGAGGATACCGGTT+GGG | - | chr3_3:70846841-70846860 | Msa0469120:intron | 45.0% |
| ! | CCTCCAATAAATGGACTTGG+AGG | + | chr3_3:70846891-70846910 | None:intergenic | 45.0% |
| CCTCCAAGTCCATTTATTGG+AGG | - | chr3_3:70846888-70846907 | Msa0469120:intron | 45.0% | |
| ! | TGCATTTTCATGGGCACAGT+AGG | - | chr3_3:70846932-70846951 | Msa0469120:intron | 45.0% |
| GTTGTGCCGTAATAAACCCT+GGG | + | chr3_3:70846981-70847000 | None:intergenic | 45.0% | |
| AGTTGTGCCGTAATAAACCC+TGG | + | chr3_3:70846982-70847001 | None:intergenic | 45.0% | |
| !! | TCCATTCCATTTTGGGAACC+GGG | + | chr3_3:70847094-70847113 | None:intergenic | 45.0% |
| !! | CTCCATTCCATTTTGGGAAC+CGG | + | chr3_3:70847095-70847114 | None:intergenic | 45.0% |
| !! | GCAAGCAGAGATGGTTTTAC+AGG | - | chr3_3:70847121-70847140 | Msa0469120:intron | 45.0% |
| CAAAAGCTCAATTCCCAGCA+AGG | + | chr3_3:70847482-70847501 | None:intergenic | 45.0% | |
| AAAGAAACTGTGCCAGCTGA+TGG | + | chr3_3:70847511-70847530 | None:intergenic | 45.0% | |
| AGCAAGGCTACCAAATCGTT+CGG | - | chr3_3:70847554-70847573 | Msa0469120:intron | 45.0% | |
| GATCTGCATTGCCAATTCTC+TGG | + | chr3_3:70847612-70847631 | None:intergenic | 45.0% | |
| CGGGCCATTTGAATTGTTGA+AGG | + | chr3_3:70847782-70847801 | None:intergenic | 45.0% | |
| AATGAGTGGGATGTGACAAG+CGG | - | chr3_3:70848404-70848423 | Msa0469120:intron | 45.0% | |
| GGTCCAATAACACCAACCAA+AGG | + | chr3_3:70848489-70848508 | None:intergenic | 45.0% | |
| !! | CACTTTGGGACTCTTTGGAT+TGG | - | chr3_3:70848681-70848700 | Msa0469120:five_prime_UTR | 45.0% |
| !! | TCTTTGGATTGGCTTTCACC+TGG | - | chr3_3:70848692-70848711 | Msa0469120:five_prime_UTR | 45.0% |
| AGACGGAAGTAGGAAGGACA+AGG | + | chr3_3:70843928-70843947 | None:intergenic | 50.0% | |
| ATACTCTTCCCCACTCCACA+AGG | - | chr3_3:70844099-70844118 | Msa0469120:CDS | 50.0% | |
| AGAACCGAACCTTGTGGAGT+GGG | + | chr3_3:70844111-70844130 | None:intergenic | 50.0% | |
| AAGAACCGAACCTTGTGGAG+TGG | + | chr3_3:70844112-70844131 | None:intergenic | 50.0% | |
| !! | GGAGGGTGGCTTGTTATTGA+AGG | - | chr3_3:70844501-70844520 | Msa0469120:intron | 50.0% |
| ! | CCCCCACTCACTCTTTTCTA+AGG | + | chr3_3:70844787-70844806 | None:intergenic | 50.0% |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr3_3:70845050-70845069 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr3_3:70845056-70845075 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr3_3:70845053-70845072 | Msa0469120:CDS | 50.0% | |
| ATTTAGTCCCACAACGAGCG+AGG | + | chr3_3:70845204-70845223 | None:intergenic | 50.0% | |
| ACAGGGATTCCCCATCTTCA+TGG | - | chr3_3:70845358-70845377 | Msa0469120:intron | 50.0% | |
| CAGGGATTCCCCATCTTCAT+GGG | - | chr3_3:70845359-70845378 | Msa0469120:intron | 50.0% | |
| CAGCTTACAGCAGACTATCC+AGG | - | chr3_3:70846097-70846116 | Msa0469120:intron | 50.0% | |
| CAGACTATCCAGGTGTACCA+GGG | - | chr3_3:70846107-70846126 | Msa0469120:intron | 50.0% | |
| GCTGAATTATCATCCCACCC+TGG | + | chr3_3:70846127-70846146 | None:intergenic | 50.0% | |
| !! | AGAGCGCCGAAGATGTTCTT+AGG | - | chr3_3:70846218-70846237 | Msa0469120:intron | 50.0% |
| !! | GAGCGCCGAAGATGTTCTTA+GGG | - | chr3_3:70846219-70846238 | Msa0469120:intron | 50.0% |
| TGGAGACTTAGGGCTTGGAT+TGG | + | chr3_3:70846617-70846636 | None:intergenic | 50.0% | |
| AAAGCAATCCACCACCCAAC+CGG | + | chr3_3:70846858-70846877 | None:intergenic | 50.0% | |
| ATTGACCTTCATGCTGCTCC+CGG | - | chr3_3:70847073-70847092 | Msa0469120:intron | 50.0% | |
| TCCCGGTTCCCAAAATGGAA+TGG | - | chr3_3:70847090-70847109 | Msa0469120:intron | 50.0% | |
| GAGCATAGTGCAAGCAGAGA+TGG | - | chr3_3:70847112-70847131 | Msa0469120:intron | 50.0% | |
| !! | GCAGAGATGGTTTTACAGGC+TGG | - | chr3_3:70847125-70847144 | Msa0469120:intron | 50.0% |
| AGGAGAGTGGGTGAATGAGT+GGG | - | chr3_3:70848391-70848410 | Msa0469120:intron | 50.0% | |
| !!! | GGGAGCACTGGGATTTTGAA+TGG | - | chr3_3:70848522-70848541 | Msa0469120:exon | 50.0% |
| CGGAAGTAGGAAGGACAAGG+TGG | + | chr3_3:70843925-70843944 | None:intergenic | 55.0% | |
| CTTCCCCACTCCACAAGGTT+CGG | - | chr3_3:70844104-70844123 | Msa0469120:CDS | 55.0% | |
| GAACCGAACCTTGTGGAGTG+GGG | + | chr3_3:70844110-70844129 | None:intergenic | 55.0% | |
| GAAGTGGAGGGGTTACATGG+TGG | - | chr3_3:70844453-70844472 | Msa0469120:intron | 55.0% | |
| GAGGAGTGAACTTAGGAGGG+TGG | - | chr3_3:70844487-70844506 | Msa0469120:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr3_3:70845042-70845061 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr3_3:70845041-70845060 | Msa0469120:CDS | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr3_3:70845042-70845061 | Msa0469120:CDS | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr3_3:70845048-70845067 | Msa0469120:CDS | 55.0% | |
| GTATCTGCAGACAATGGGGG+AGG | - | chr3_3:70845318-70845337 | Msa0469120:CDS | 55.0% | |
| GCAGACTATCCAGGTGTACC+AGG | - | chr3_3:70846106-70846125 | Msa0469120:intron | 55.0% | |
| ACTATCCAGGTGTACCAGGG+TGG | - | chr3_3:70846110-70846129 | Msa0469120:intron | 55.0% | |
| CTATCCAGGTGTACCAGGGT+GGG | - | chr3_3:70846111-70846130 | Msa0469120:intron | 55.0% | |
| ! | TGCAAAGCATCCTGCCTTGC+TGG | - | chr3_3:70847465-70847484 | Msa0469120:CDS | 55.0% |
| ! | GCAAAGCATCCTGCCTTGCT+GGG | - | chr3_3:70847466-70847485 | Msa0469120:CDS | 55.0% |
| AGCTCAATTCCCAGCAAGGC+AGG | + | chr3_3:70847478-70847497 | None:intergenic | 55.0% | |
| AAGTCGGGAAGGTCTGTTGC+AGG | - | chr3_3:70847756-70847775 | Msa0469120:intron | 55.0% | |
| CAGGAGAGTGGGTGAATGAG+TGG | - | chr3_3:70848390-70848409 | Msa0469120:intron | 55.0% | |
| TGACACCACCTCGCTCGTTG+TGG | - | chr3_3:70845193-70845212 | Msa0469120:CDS | 60.0% | |
| GACACCACCTCGCTCGTTGT+GGG | - | chr3_3:70845194-70845213 | Msa0469120:CDS | 60.0% | |
| TAGTCCCACAACGAGCGAGG+TGG | + | chr3_3:70845201-70845220 | None:intergenic | 60.0% | |
| TCATCCCACCCTGGTACACC+TGG | + | chr3_3:70846118-70846137 | None:intergenic | 60.0% | |
| ! | CTGTGAGGATACCGGTTGGG+TGG | - | chr3_3:70846844-70846863 | Msa0469120:intron | 60.0% |
| ! | TGAGGATACCGGTTGGGTGG+TGG | - | chr3_3:70846847-70846866 | Msa0469120:intron | 60.0% |
| GCTGCTCCCGGTTCCCAAAA+TGG | - | chr3_3:70847085-70847104 | Msa0469120:intron | 60.0% | |
| GGGAACCGGGAGCAGCATGA+AGG | + | chr3_3:70847081-70847100 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 70843855 | 70848954 | 70843855 | ID=Msa0469120;Name=Msa0469120 |
| chr3_3 | mRNA | 70843855 | 70848954 | 70843855 | ID=Msa0469120-mRNA-1;Parent=Msa0469120;Name=Msa0469120-mRNA-1;_AED=0.13;_eAED=0.13;_QI=385|0.66|0.7|1|0.88|0.8|10|216|436 |
| chr3_3 | exon | 70843855 | 70844156 | 70843855 | ID=Msa0469120-mRNA-1:exon:17341;Parent=Msa0469120-mRNA-1 |
| chr3_3 | exon | 70844237 | 70844371 | 70844237 | ID=Msa0469120-mRNA-1:exon:17340;Parent=Msa0469120-mRNA-1 |
| chr3_3 | exon | 70844995 | 70845347 | 70844995 | ID=Msa0469120-mRNA-1:exon:17339;Parent=Msa0469120-mRNA-1 |
| chr3_3 | exon | 70845603 | 70845758 | 70845603 | ID=Msa0469120-mRNA-1:exon:17338;Parent=Msa0469120-mRNA-1 |
| chr3_3 | exon | 70845860 | 70846029 | 70845860 | ID=Msa0469120-mRNA-1:exon:17337;Parent=Msa0469120-mRNA-1 |
| chr3_3 | exon | 70846569 | 70846727 | 70846569 | ID=Msa0469120-mRNA-1:exon:17336;Parent=Msa0469120-mRNA-1 |
| chr3_3 | exon | 70847417 | 70847526 | 70847417 | ID=Msa0469120-mRNA-1:exon:17335;Parent=Msa0469120-mRNA-1 |
| chr3_3 | exon | 70848287 | 70848352 | 70848287 | ID=Msa0469120-mRNA-1:exon:17334;Parent=Msa0469120-mRNA-1 |
| chr3_3 | exon | 70848463 | 70848582 | 70848463 | ID=Msa0469120-mRNA-1:exon:17333;Parent=Msa0469120-mRNA-1 |
| chr3_3 | exon | 70848614 | 70848954 | 70848614 | ID=Msa0469120-mRNA-1:exon:17332;Parent=Msa0469120-mRNA-1 |
| chr3_3 | five_prime_UTR | 70848614 | 70848954 | 70848614 | ID=Msa0469120-mRNA-1:five_prime_utr;Parent=Msa0469120-mRNA-1 |
| chr3_3 | five_prime_UTR | 70848539 | 70848582 | 70848539 | ID=Msa0469120-mRNA-1:five_prime_utr;Parent=Msa0469120-mRNA-1 |
| chr3_3 | CDS | 70848463 | 70848538 | 70848463 | ID=Msa0469120-mRNA-1:cds;Parent=Msa0469120-mRNA-1 |
| chr3_3 | CDS | 70848287 | 70848352 | 70848287 | ID=Msa0469120-mRNA-1:cds;Parent=Msa0469120-mRNA-1 |
| chr3_3 | CDS | 70847417 | 70847526 | 70847417 | ID=Msa0469120-mRNA-1:cds;Parent=Msa0469120-mRNA-1 |
| chr3_3 | CDS | 70846569 | 70846727 | 70846569 | ID=Msa0469120-mRNA-1:cds;Parent=Msa0469120-mRNA-1 |
| chr3_3 | CDS | 70845860 | 70846029 | 70845860 | ID=Msa0469120-mRNA-1:cds;Parent=Msa0469120-mRNA-1 |
| chr3_3 | CDS | 70845603 | 70845758 | 70845603 | ID=Msa0469120-mRNA-1:cds;Parent=Msa0469120-mRNA-1 |
| chr3_3 | CDS | 70844995 | 70845347 | 70844995 | ID=Msa0469120-mRNA-1:cds;Parent=Msa0469120-mRNA-1 |
| chr3_3 | CDS | 70844237 | 70844371 | 70844237 | ID=Msa0469120-mRNA-1:cds;Parent=Msa0469120-mRNA-1 |
| chr3_3 | CDS | 70844071 | 70844156 | 70844071 | ID=Msa0469120-mRNA-1:cds;Parent=Msa0469120-mRNA-1 |
| chr3_3 | three_prime_UTR | 70843855 | 70844070 | 70843855 | ID=Msa0469120-mRNA-1:three_prime_utr;Parent=Msa0469120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
