AlfalfaGEDB | Msa0469190

M. sativa cultivar zhongmu-4 / Msa0469190

KEGG: K02991|K14498
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0469190	XP_013461256.1	97.983	347	7	0	1	347	1	347	0.0	703

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0469190	sp\|A2YNT8\|SAPK2_ORYSI	73.623	345	84	2	3	347	2	339	0.0	518

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0469190	A0A072V0R0	97.983	347	7	0	1	347	1	347	0.0	703

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0423000	Msa0469190	0.887272	1.651078e-72	-8.615850e-47
Msa0469190	Msa0514920	0.976044	4.453500e-141	-8.615850e-47
Msa0469190	Msa1380070	0.864066	1.588643e-64	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0469190	MtrunA17_Chr3g0123791	97.983	347	7	0	1	347	1	347	0.0	703
Msa0469190	MtrunA17_Chr8g0381821	77.101	345	72	3	3	347	2	339	0.0	543
Msa0469190	MtrunA17_Chr5g0426521	72.566	339	87	3	3	341	2	334	0.0	510
Msa0469190	MtrunA17_Chr4g0055451	70.640	344	94	3	1	344	1	337	1.38e-180	503
Msa0469190	MtrunA17_Chr4g0045371	67.836	342	100	3	3	343	21	353	5.33e-177	495
Msa0469190	MtrunA17_Chr2g0277501	71.296	324	86	3	3	323	2	321	3.12e-170	477
Msa0469190	MtrunA17_Chr1g0162301	68.339	319	97	2	3	320	22	337	5.17e-167	470
Msa0469190	MtrunA17_Chr8g0385281	71.475	305	85	1	1	305	1	303	5.68e-167	469
Msa0469190	MtrunA17_Chr3g0131061	70.627	303	87	1	3	305	2	302	1.74e-164	463
Msa0469190	MtrunA17_Chr8g0374571	62.319	345	127	1	3	347	21	362	6.77e-163	459

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0469190	AT4G33950.1	69.876	322	94	1	3	324	19	337	1.95e-172	484
Msa0469190	AT4G33950.2	70.662	317	90	1	3	319	19	332	2.69e-171	480
Msa0469190	AT1G78290.3	76.316	304	64	2	3	306	2	297	2.98e-171	480
Msa0469190	AT1G78290.2	76.316	304	64	2	3	306	2	297	2.98e-171	480
Msa0469190	AT4G40010.1	75.244	307	75	1	3	308	2	308	8.60e-171	479
Msa0469190	AT1G60940.1	71.382	304	85	1	3	306	2	303	2.03e-165	466
Msa0469190	AT1G60940.2	71.382	304	85	1	3	306	2	303	2.03e-165	466
Msa0469190	AT1G10940.1	70.957	303	86	1	3	305	2	302	5.59e-165	465
Msa0469190	AT5G63650.1	70.395	304	88	1	3	306	2	303	5.92e-163	459
Msa0469190	AT1G10940.2	69.132	311	86	2	3	305	2	310	8.49e-162	457

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Find 91 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGATAGTCAATTTGT+TGG	0.396028	3_3:+70987773	Msa0469190:CDS
AAGAAAAGAATATGATGGAA+AGG	0.553370	3_3:+70986888	Msa0469190:CDS
AAGGTCCGGGGTTCGAATCC+CGG	0.497578	3_3:-70987941	None:intergenic
AAGTTAGAAAATGATGTGAA+TGG	0.625151	3_3:+70987674	Msa0469190:CDS
AATACTGTCCATAATTCAAG+AGG	0.618451	3_3:+70987727	Msa0469190:CDS
AATCATTGAGAGAGGCCCTA+AGG	0.557706	3_3:+70984983	Msa0469190:CDS
AATGATATTGGGATGCTTCA+AGG	0.422819	3_3:-70985210	None:intergenic
AATTGTATACGTCACAAGAA+TGG	0.533511	3_3:+70984863	Msa0469190:exon
ACCAACTAGCATTATATACA+AGG	0.601104	3_3:-70987054	None:intergenic
ACCTCTGGTGCAATATATGC+TGG	0.477069	3_3:-70986859	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTGTATACGTCACAAGAA+TGG	+	chr3_3:70984863-70984882	Msa0469190:exon	30.0%
CAAACAATATTACACTAAGG+AGG	-	chr3_3:70985276-70985295	None:intergenic	30.0%
GTGTTTATTTGAGTATGTGT+TGG	+	chr3_3:70986111-70986130	Msa0469190:intron	30.0%
TTCAAACCAGCTAAAACAAT+AGG	-	chr3_3:70986396-70986415	None:intergenic	30.0%
CAACTCAAAATATGTGACTT+TGG	+	chr3_3:70986495-70986514	Msa0469190:CDS	30.0%
ACATTGTTGTGTTTGAGAAT+AGG	+	chr3_3:70987004-70987023	Msa0469190:intron	30.0%
ACCTTGTATATAATGCTAGT+TGG	+	chr3_3:70987053-70987072	Msa0469190:CDS	30.0%
ACCAACTAGCATTATATACA+AGG	-	chr3_3:70987057-70987076	None:intergenic	30.0%
TTGTATATAATGCTAGTTGG+TGG	+	chr3_3:70987056-70987075	Msa0469190:CDS	30.0%
GAATTTCAGAAAGACAATTG+AGG	+	chr3_3:70987109-70987128	Msa0469190:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	70984689	70988205	70984689	ID=Msa0469190;Name=Msa0469190
chr3_3	mRNA	70984689	70988205	70984689	ID=Msa0469190-mRNA-1;Parent=Msa0469190;Name=Msa0469190-mRNA-1;_AED=0.06;_eAED=0.06;_QI=193\|1\|1\|1\|0.88\|0.8\|10\|280\|347
chr3_3	exon	70984689	70985004	70984689	ID=Msa0469190-mRNA-1:exon:17375;Parent=Msa0469190-mRNA-1
chr3_3	exon	70985170	70985244	70985170	ID=Msa0469190-mRNA-1:exon:17376;Parent=Msa0469190-mRNA-1
chr3_3	exon	70985575	70985676	70985575	ID=Msa0469190-mRNA-1:exon:17377;Parent=Msa0469190-mRNA-1
chr3_3	exon	70986277	70986330	70986277	ID=Msa0469190-mRNA-1:exon:17378;Parent=Msa0469190-mRNA-1
chr3_3	exon	70986435	70986527	70986435	ID=Msa0469190-mRNA-1:exon:17379;Parent=Msa0469190-mRNA-1
chr3_3	exon	70986817	70986909	70986817	ID=Msa0469190-mRNA-1:exon:17380;Parent=Msa0469190-mRNA-1
chr3_3	exon	70987026	70987130	70987026	ID=Msa0469190-mRNA-1:exon:17381;Parent=Msa0469190-mRNA-1
chr3_3	exon	70987396	70987494	70987396	ID=Msa0469190-mRNA-1:exon:17382;Parent=Msa0469190-mRNA-1
chr3_3	exon	70987590	70988116	70987590	ID=Msa0469190-mRNA-1:exon:17383;Parent=Msa0469190-mRNA-1
chr3_3	exon	70988153	70988205	70988153	ID=Msa0469190-mRNA-1:exon:17384;Parent=Msa0469190-mRNA-1
chr3_3	five_prime_UTR	70984689	70984881	70984689	ID=Msa0469190-mRNA-1:five_prime_utr;Parent=Msa0469190-mRNA-1
chr3_3	CDS	70984882	70985004	70984882	ID=Msa0469190-mRNA-1:cds;Parent=Msa0469190-mRNA-1
chr3_3	CDS	70985170	70985244	70985170	ID=Msa0469190-mRNA-1:cds;Parent=Msa0469190-mRNA-1
chr3_3	CDS	70985575	70985676	70985575	ID=Msa0469190-mRNA-1:cds;Parent=Msa0469190-mRNA-1
chr3_3	CDS	70986277	70986330	70986277	ID=Msa0469190-mRNA-1:cds;Parent=Msa0469190-mRNA-1
chr3_3	CDS	70986435	70986527	70986435	ID=Msa0469190-mRNA-1:cds;Parent=Msa0469190-mRNA-1
chr3_3	CDS	70986817	70986909	70986817	ID=Msa0469190-mRNA-1:cds;Parent=Msa0469190-mRNA-1
chr3_3	CDS	70987026	70987130	70987026	ID=Msa0469190-mRNA-1:cds;Parent=Msa0469190-mRNA-1
chr3_3	CDS	70987396	70987494	70987396	ID=Msa0469190-mRNA-1:cds;Parent=Msa0469190-mRNA-1
chr3_3	CDS	70987590	70987889	70987590	ID=Msa0469190-mRNA-1:cds;Parent=Msa0469190-mRNA-1
chr3_3	three_prime_UTR	70987890	70988116	70987890	ID=Msa0469190-mRNA-1:three_prime_utr;Parent=Msa0469190-mRNA-1
chr3_3	three_prime_UTR	70988153	70988205	70988153	ID=Msa0469190-mRNA-1:three_prime_utr;Parent=Msa0469190-mRNA-1

Gene Sequence

>Msa0469190

ATGGAAGAACGTTATGAGATTATTAAAGGTATTGGGTCAGGAAATTTTGGGGTAGCCAAGCTTGTAAGGGAGAGACAAAGTGGTAAACTATATGCTGTCAAAATCATTGAGAGAGGCCCTAAGATTGATGAGCATGTTCAAAGGGAGATTATAAATCATAGATCCTTGAAGCATCCCAATATCATTAGATTTAAAGAGGTTCTATGTACTCCAGCTCATCTAGCTATAGTGATGGAGTATGCTGCAGGAGGAGAACTATTTGAAAGAATATGCAGTGCTGGTAGATTTTGTGAAGACGAGGCAAGATATTTCTTCCAGCAGTTGATTTCCGGAGTCAGCTATTGTCATTCAATGGAAATTTGCCATAGAGATCTCAAGCTAGAAAATACACTTTTAGATGGAAGTTCTTCACCACAACTCAAAATATGTGACTTTGGTTACTCCAAGTCTTCTGTTCTGCATTCCCAACCTAAATCTACTGTGGGAACTCCAGCATATATTGCACCAGAGGTTTTTTCAAGAAAAGAATATGATGGAAAGGTTGCTGATGTTTGGTCTTGTGGGGTTACCTTGTATATAATGCTAGTTGGTGGTTATCCTTTTGAAGATGCAGATGATCCACGGAATTTCAGAAAGACAATTGAGAGAATTCTTAAGGTCCATTATTCTATTCCCGACTATGTTCGTGTCTCCAAAGATTGTAGACACCTTTTATCTCGAATATTTGTGGCCAGCCCTGAGAAGAGAATCACTATCCCAGAAATTAAAATGCACCCATGGTTCCTTAATAAATTGCCAGTGGAATTTGTGGAGGAAGGGAAAAATAACAAGTTAGAAAATGATGTGAATGGTGTGGATGATTCATCTCAAAGCATTGAGGAAATACTGTCCATAATTCAAGAGGCACGGAAGCCAGTTGAGGGCCCAAAAATTGATAGTCAATTTGTTGGAGGAGAAATGGATTTTGATGAGATGGAAGCAGATGATGATTTTGATAATGAGATAGAAACTAGTGATGATTTTGATTTTGTTTGTGATATGTGA

Protein sequence

>Msa0469190

MEERYEIIKGIGSGNFGVAKLVRERQSGKLYAVKIIERGPKIDEHVQREIINHRSLKHPNIIRFKEVLCTPAHLAIVMEYAAGGELFERICSAGRFCEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGSSSPQLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVFSRKEYDGKVADVWSCGVTLYIMLVGGYPFEDADDPRNFRKTIERILKVHYSIPDYVRVSKDCRHLLSRIFVASPEKRITIPEIKMHPWFLNKLPVEFVEEGKNNKLENDVNGVDDSSQSIEEILSIIQEARKPVEGPKIDSQFVGGEMDFDEMEADDDFDNEIETSDDFDFVCDM*