AlfalfaGEDB | Msa0473300

M. sativa cultivar zhongmu-4 / Msa0473300

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0071944
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0473300	XP_003602466.2	98.354	1033	16	1	1	1032	1	1033	0.0	2046

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0473300	sp\|Q0WR59\|Y5020_ARATH	63.391	1038	342	9	18	1029	21	1046	0.0	1253

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0473300	G7J9S5	98.354	1033	16	1	1	1032	1	1033	0.0	2046

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0377480	Msa0473300	0.975116	2.294190e-139	-8.615850e-47
Msa0426840	Msa0473300	0.970291	2.151373e-131	-8.615850e-47
Msa0426870	Msa0473300	0.870261	1.668049e-66	-8.615850e-47
Msa0473300	Msa0517420	0.963160	9.567966e-122	-8.615850e-47
Msa0473300	Msa1173430	0.979920	4.854622e-149	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0473300	MtrunA17_Chr3g0129081	98.354	1033	16	1	1	1032	1	1033	0.0	2046
Msa0473300	MtrunA17_Chr5g0440581	40.643	1058	524	17	7	1029	4	992	0.0	719
Msa0473300	MtrunA17_Chr2g0292521	38.792	1093	535	18	21	1029	24	1066	0.0	697
Msa0473300	MtrunA17_Chr3g0128731	28.492	1074	595	41	12	1032	27	980	9.38e-79	278
Msa0473300	MtrunA17_Chr5g0440191	27.273	1067	630	35	41	1024	45	1048	8.30e-72	259
Msa0473300	MtrunA17_Chr1g0203631	28.166	987	572	34	98	1026	358	1265	2.09e-68	250
Msa0473300	MtrunA17_Chr1g0203631	30.713	547	292	12	71	535	161	702	2.89e-45	178
Msa0473300	MtrunA17_Chr1g0203631	30.735	449	260	14	129	532	101	543	1.71e-35	146
Msa0473300	MtrunA17_Chr1g0203631	32.432	370	196	9	202	536	102	452	6.99e-31	132
Msa0473300	MtrunA17_Chr1g0203631	30.383	418	223	11	76	429	456	869	9.04e-31	131

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0473300	AT5G10020.1	63.391	1038	342	9	18	1029	21	1046	0.0	1253
Msa0473300	AT5G10020.2	60.865	1017	354	14	18	1029	21	998	0.0	1147
Msa0473300	AT4G20940.1	40.901	1088	508	19	21	1029	6	1037	0.0	701
Msa0473300	AT2G27060.1	39.581	1051	562	19	7	1029	8	1013	0.0	674
Msa0473300	AT2G27060.3	39.646	961	511	16	97	1029	1	920	0.0	612
Msa0473300	AT2G27060.2	36.683	826	412	16	7	787	8	767	2.67e-137	433
Msa0473300	AT3G49670.1	27.427	1061	595	37	23	1030	27	965	3.23e-73	263
Msa0473300	AT5G63930.1	28.351	1104	628	42	23	1022	30	1074	6.97e-71	257
Msa0473300	AT5G65700.1	26.866	1072	593	38	23	1030	25	969	2.17e-67	245
Msa0473300	AT5G65700.2	26.866	1072	593	38	23	1030	25	969	2.17e-67	245

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Find 278 sgRNAs with CRISPR-Local

Find 424 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTCAACGAAGATGTT+GGG	0.387310	3_3:+75865832	None:intergenic
AAAATCCACCTCTCACTTCA+TGG	0.339414	3_3:-75869080	Msa0473300:CDS
AAAATGGTTAAGAGTGGGGC+TGG	0.534837	3_3:-75865415	Msa0473300:CDS
AAAGAATCAGAAAATAACAA+TGG	0.582284	3_3:+75864362	None:intergenic
AAAGCTCAACGAAGATGTTG+GGG	0.584156	3_3:+75865833	None:intergenic
AACTATTACCATAGAGATGG+AGG	0.561334	3_3:+75865244	None:intergenic
AACTCGACGTTGTGAAGAGT+CGG	0.580353	3_3:+75868631	None:intergenic
AACTGCTTGCAACATCTCTC+AGG	0.509188	3_3:-75864512	Msa0473300:CDS
AACTTGGCCCTCCATCTCTA+TGG	0.380492	3_3:-75865252	Msa0473300:intron
AAGAAGAGAGAAGAATGAGG+AGG	0.620789	3_3:+75869169	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAGAAGAAGAATAAGAAGA+AGG	+	chr3_3:75864261-75864280	None:intergenic	30.0%
TTCTTCTTCTTCTTCTTCTA+GGG	-	chr3_3:75864278-75864297	Msa0473300:three_prime_UTR	30.0%
AATTACTTCTCTTCAGCATT+TGG	-	chr3_3:75864722-75864741	Msa0473300:CDS	30.0%
TCACATAACAATTTCAAAGG+TGG	-	chr3_3:75864822-75864841	Msa0473300:CDS	30.0%
TCAATAATCTTCAACAGCTT+AGG	-	chr3_3:75864859-75864878	Msa0473300:CDS	30.0%
CAATAATCTTCAACAGCTTA+GGG	-	chr3_3:75864860-75864879	Msa0473300:CDS	30.0%
ATTTGCACTCTAACAATTTC+TGG	-	chr3_3:75864889-75864908	Msa0473300:CDS	30.0%
TTTGCACTCTAACAATTTCT+GGG	-	chr3_3:75864890-75864909	Msa0473300:CDS	30.0%
TTGAGTCTAAATCAATTCTC+TGG	-	chr3_3:75864963-75864982	Msa0473300:CDS	30.0%
TTGAGTGGTAATTTGATTAG+AGG	-	chr3_3:75865125-75865144	Msa0473300:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	75864188	75869398	75864188	ID=Msa0473300;Name=Msa0473300
chr3_3	mRNA	75864188	75869398	75864188	ID=Msa0473300-mRNA-1;Parent=Msa0473300;Name=Msa0473300-mRNA-1;_AED=0.07;_eAED=0.07;_QI=181\|1\|1\|1\|1\|1\|3\|249\|1032
chr3_3	exon	75864188	75865017	75864188	ID=Msa0473300-mRNA-1:exon:19757;Parent=Msa0473300-mRNA-1
chr3_3	exon	75865253	75866848	75865253	ID=Msa0473300-mRNA-1:exon:19756;Parent=Msa0473300-mRNA-1
chr3_3	exon	75868296	75869398	75868296	ID=Msa0473300-mRNA-1:exon:19755;Parent=Msa0473300-mRNA-1
chr3_3	five_prime_UTR	75869218	75869398	75869218	ID=Msa0473300-mRNA-1:five_prime_utr;Parent=Msa0473300-mRNA-1
chr3_3	CDS	75868296	75869217	75868296	ID=Msa0473300-mRNA-1:cds;Parent=Msa0473300-mRNA-1
chr3_3	CDS	75865253	75866848	75865253	ID=Msa0473300-mRNA-1:cds;Parent=Msa0473300-mRNA-1
chr3_3	CDS	75864437	75865017	75864437	ID=Msa0473300-mRNA-1:cds;Parent=Msa0473300-mRNA-1
chr3_3	three_prime_UTR	75864188	75864436	75864188	ID=Msa0473300-mRNA-1:three_prime_utr;Parent=Msa0473300-mRNA-1

Gene Sequence

>Msa0473300

ATGAATCCTCCACCGTACTTCTTCCTCCTCCTCATTCTTCTCTCTTCTTGCTCCGCCACTTCACCGGAGCTCCGATCTCTACTCAAATTCAAAAAAGGCATAACTTCAGATCCAGAAAATCCACCTCTCACTTCATGGAACCTTTCTTCTCTCAGAAACGACAACATATGTCCACGTTCATGGACAGGAATCACCTGCGACGACCTCACCGGAAACGTCACCGGAATTAACCTCAACAACTTCAACCTCGCCGGTGAGTTAAAATTTCAAACACTCCTCGACCTTAAACTTCTCAAAAATCTCAGTCTCGCCGGAAACAGCTTCACCGGAAGATTACCTCCGTCGTTAGGTACAATTACTTCTCTTCAGCATTTGGATCTTTCAAACAACAAATTCTACGGTCCAATTCCAGCGCGGATCAACGATCTTTGGGGTTTGAATTACCTCAATTTTTCACATAACAATTTCAAAGGTGGATTTCCAGCTCAACTCAATAATCTTCAACAGCTTAGGGTTTTGGATTTGCACTCTAACAATTTCTGGGCTAGCATTGCTGAATTAATTCCGACTCTTCACAACGTCGAGTTTCTCGATTTGAGTCTAAATCAATTCTCTGGTGGACTTTCACTTACTCTTGAGAACGTTTCATCTTTGGCGAATGCTGTTAGGTATTTGAACTTGAGTTATAACAGATTGAACGGAGAATTTTTCTCAAATGATTCAATTGTATTGTTTCGAAACTTGCAAACTCTGGATTTGAGTGGTAATTTGATTAGAGGGGAGCTTCCTTCTTTTGGTTCATTGCCTGGACTTCGAGTTTTGAGACTAGCGCGCAATCTGTTCTTTGGCGCCGTGCCTGAGGATTTGTTGCTGAGTTCAATGTCATTGGAGGAATTGGATCTTAGTCACAATGGATTTACAGGCTCAATTGCTGTAATTAATTCCACCACTTTAAATGTATTGGATCTTTCATCGAATAGTTTATCAGGCTCACTGCCAACCTCTTTGAGAAGATGCACAGTCATAGATTTGAGCAGGAATATGTTTTCTGGCGACATTTCTGTATTAGGGAACTGGGAAGACACTATGGAGGTTGTTGATCTGAGTTCAAACAAGCTGTCAGGATCCGTGCCTTCTATTATAGGGACATATTCAAAATTGTCTACCCTTGATTTAAGTTTTAATGAACTTAATGGATCCATTCCAGTTGGTTTGGTTACTTCACAATCGCTGACAAGACTGAATCTTTCTGGAAATCAATTTACAGGGCCACTTTTGCTTCAAGGTTCAGGGGCAAGTGAATTACTAATTTTGCCTCCTTTTCAGCCAATGGAATACTTTGATGTATCTAACAACTCGTTAGAAGGTGTCTTACCTTCTGATATAGATAGAATGGTTAGGCTCAAACTGCTGAATCTAGCAAGGAATGGCTTTTCCGGACAGCTTCCAAATGAATTGAGCAAACTTATTGATTTGGAGTACCTCGATTTGTCTAACAACAAATTTACCGGAAAAATTCCTGATAAGCTTTCATTTAACTTGACTGTATTTAATGTGTCCAATAATGATCTATCTGGCCCTGTTCCTGAAAATTTGCGGCGGTTTCCTCCTTCATCTTTTTACCCTGGAAATGAAAAGCTAAAGTTACCAGATAATGCCCCTGAACATTCTGCACTGCCAAATATTCCAGATAAAGATAAACATCATAGTTCAAAGGGTAATATCAGGATAGCAATTATCCTTGCTTCTGTGGGTGCTGCTGTGATGATTGCTTTTGTTTTATTGGCTTATCATCGAACACAAGCAAAAGAATTTCGTGGGAGAAGTGATTTTGCTGGCCAAACTACTGGAAGAGATGTCAAGTTAGCAGGACTTTCAAGGCCTTCCCTCTTCAAGTTCAATACAAATGCTCAACCCCCAACATCTTCGTTGAGCTTTTCAAATGATCACTTATTGACATCCAATTCAAGATCACTTTCTGGACCACAGTCAGAGTTTATAACCGAAATTTCTGAGCACGGCTTGCCGCAGGAAGTGGTAGCAACCAGTTCAGCACCTCCTAATTTGATGGATAACCCTCCCATGTCATCTGGAAGGAAGTCTTCTCCTGGTTCCCCATTGTCGTCCTCACCACGCTTTATCGAGGCTTGTGAAAAGCCTGTGATGTTGGACGTATACTCACCAGATCGACTAGCTGGGGAACTGTTTTTCCTGGATTCTTCACTAGCATTCACTGCAGAGGAGTTATCTCGAGCTCCGGCTGAAGTTCTTGGTAGAAGTAGCCACGGCACTCTGTACAAAGCTACTCTGGACAATGGTCATATGTTGACTGTAAAATGGTTAAGAGTGGGGCTGGTCAAACATAAAAAGGAATTTGCGAGAGAAGTTAAAAAGATCGGTTCGATGAGGCATCCAAACATTGTCCCATTACGAGCATACTATTGGGGGCCTAGGGAACAGGAGAGGCTTCTTTTAGCTGACTACATTCATGGAGACAACTTGGCCCTCCATCTCTATGAGACCACTCCCCGGAGATACTCGCCATTGTCATTCAGCCAGAGAATAAGAGTTGCAGTTGAAGTTGCTAGATGTCTTTTATACCTTCACGATCGAGGGCTTCCCCATGGAAATCTGAAGCCGACAAATATTCTGTTAGCAGGCCCTGATTACAGTGTTTGTCTTACTGACTACGGTCTGCACCGGCTAATGACACCGGCTGGAGTTGCAGAGCAGATACTAAATCTTGGAGCACTCGGATACCGCGCTCCAGAACTTGCTTCTGCATCCAAACCACTTCCATCATTTAAGGCCGATGTTTATGCACTTGGGGTGATCCTAATGGAATTATTAACAAGGAAAAGTGCAGGCGACATAATATCTGGGCAATCAGGTGCTGTTGATCTTACAGATTGGGTTAGGCTGTGTGAGAGAGAAGGAAGGGTAATGGACTGTATAGACAGAGACATTGCAGGCGGTGAAGAATCCTCTAAAGAGATGGACCAACTGCTTGCAACATCTCTCAGGTGTATTCTCCCTGTACATGAAAGGCCTAACATCAGACAAGTTTTTGAAGATCTCTGTTCCATACCATCGGCTTGA

Protein sequence

>Msa0473300

MNPPPYFFLLLILLSSCSATSPELRSLLKFKKGITSDPENPPLTSWNLSSLRNDNICPRSWTGITCDDLTGNVTGINLNNFNLAGELKFQTLLDLKLLKNLSLAGNSFTGRLPPSLGTITSLQHLDLSNNKFYGPIPARINDLWGLNYLNFSHNNFKGGFPAQLNNLQQLRVLDLHSNNFWASIAELIPTLHNVEFLDLSLNQFSGGLSLTLENVSSLANAVRYLNLSYNRLNGEFFSNDSIVLFRNLQTLDLSGNLIRGELPSFGSLPGLRVLRLARNLFFGAVPEDLLLSSMSLEELDLSHNGFTGSIAVINSTTLNVLDLSSNSLSGSLPTSLRRCTVIDLSRNMFSGDISVLGNWEDTMEVVDLSSNKLSGSVPSIIGTYSKLSTLDLSFNELNGSIPVGLVTSQSLTRLNLSGNQFTGPLLLQGSGASELLILPPFQPMEYFDVSNNSLEGVLPSDIDRMVRLKLLNLARNGFSGQLPNELSKLIDLEYLDLSNNKFTGKIPDKLSFNLTVFNVSNNDLSGPVPENLRRFPPSSFYPGNEKLKLPDNAPEHSALPNIPDKDKHHSSKGNIRIAIILASVGAAVMIAFVLLAYHRTQAKEFRGRSDFAGQTTGRDVKLAGLSRPSLFKFNTNAQPPTSSLSFSNDHLLTSNSRSLSGPQSEFITEISEHGLPQEVVATSSAPPNLMDNPPMSSGRKSSPGSPLSSSPRFIEACEKPVMLDVYSPDRLAGELFFLDSSLAFTAEELSRAPAEVLGRSSHGTLYKATLDNGHMLTVKWLRVGLVKHKKEFAREVKKIGSMRHPNIVPLRAYYWGPREQERLLLADYIHGDNLALHLYETTPRRYSPLSFSQRIRVAVEVARCLLYLHDRGLPHGNLKPTNILLAGPDYSVCLTDYGLHRLMTPAGVAEQILNLGALGYRAPELASASKPLPSFKADVYALGVILMELLTRKSAGDIISGQSGAVDLTDWVRLCEREGRVMDCIDRDIAGGEESSKEMDQLLATSLRCILPVHERPNIRQVFEDLCSIPSA*