AlfalfaGEDB | Msa0473510

M. sativa cultivar zhongmu-4 / Msa0473510

KEGG: K13415
GO: GO:0000003 GO:0000226 GO:0001578 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009314 GO:0009411 GO:0009416 GO:0009555 GO:0009593 GO:0009628 GO:0009642 GO:0009646 GO:0009647 GO:0009653 GO:0009719 GO:0009720 GO:0009725 GO:0009726 GO:0009729 GO:0009741 GO:0009742 GO:0009755 GO:0009791 GO:0009908 GO:0009909 GO:0009911 GO:0009987 GO:0010008 GO:0010033 GO:0010208 GO:0010224 GO:0010268 GO:0010584 GO:0010927 GO:0010941 GO:0012505 GO:0014070 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022607 GO:0023052 GO:0030154 GO:0030198 GO:0031090 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0036211 GO:0042221 GO:0042592 GO:0042802 GO:0042803 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043401 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046982 GO:0046983 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048518 GO:0048519 GO:0048523 GO:0048545 GO:0048580 GO:0048582 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051606 GO:0051716 GO:0055088 GO:0060548 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0071944 GO:0085029 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097708 GO:0098588 GO:0098805 GO:0099402 GO:0140096 GO:1900140 GO:1901564 GO:1901700 GO:1901701 GO:1905392 GO:1905393 GO:2000026 GO:2000241 GO:2000243
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0473510	XP_003602504.1	98.485	1188	18	0	1	1188	1	1188	0.0	2386

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0473510	sp\|Q8GUQ5\|BRI1_SOLLC	67.542	1180	365	12	22	1188	32	1206	0.0	1578

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0473510	G7JAC3	98.485	1188	18	0	1	1188	1	1188	0.0	2386

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0427140	Msa0473510	0.906456	1.454939e-80	-8.615850e-47
Msa0473510	Msa1374420	0.883407	4.605906e-71	-8.615850e-47
Msa0473510	Msa1385870	0.902082	1.393544e-78	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0473510	MtrunA17_Chr3g0129391	98.485	1188	18	0	1	1188	1	1188	0.0	2386
Msa0473510	MtrunA17_Chr3g0079661	48.506	1171	540	22	33	1158	47	1199	0.0	1008
Msa0473510	MtrunA17_Chr8g0375511	45.593	1180	554	20	10	1161	18	1137	0.0	950
Msa0473510	MtrunA17_Chr1g0203631	34.969	1304	647	35	10	1152	7	1270	0.0	583
Msa0473510	MtrunA17_Chr7g0237821	34.112	1070	603	29	135	1151	54	1074	1.52e-156	497
Msa0473510	MtrunA17_Chr2g0317071	35.481	1009	572	25	167	1152	118	1070	3.31e-156	495
Msa0473510	MtrunA17_Chr2g0317071	32.947	604	319	18	38	578	62	642	3.45e-51	197
Msa0473510	MtrunA17_Chr2g0317071	29.226	349	201	7	411	734	98	425	2.93e-20	97.4
Msa0473510	MtrunA17_Chr1g0189871	34.524	1092	580	28	127	1173	98	1099	4.66e-156	495
Msa0473510	MtrunA17_Chr1g0169841	34.014	1126	626	29	51	1149	53	1088	3.14e-155	493

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0473510	AT4G39400.1	67.406	1172	364	10	26	1184	27	1193	0.0	1510
Msa0473510	AT1G55610.1	49.237	1180	514	30	33	1183	33	1156	0.0	1018
Msa0473510	AT1G55610.2	49.237	1180	514	30	33	1183	33	1156	0.0	1018
Msa0473510	AT3G13380.1	49.302	1146	519	23	29	1150	28	1135	0.0	1005
Msa0473510	AT2G01950.1	49.801	1006	457	16	190	1160	146	1138	0.0	923
Msa0473510	AT2G01950.1	32.090	670	319	24	38	591	43	692	1.44e-55	211
Msa0473510	AT5G07280.1	36.587	1219	617	33	35	1150	27	1192	0.0	582
Msa0473510	AT1G17230.1	33.918	1141	634	28	38	1152	31	1077	9.00e-163	513
Msa0473510	AT1G17230.2	33.918	1141	634	28	38	1152	31	1077	4.37e-162	513
Msa0473510	AT1G74360.1	35.146	1030	532	27	238	1162	106	1104	1.48e-156	497

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Find 348 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTCAATCTCCATATT+GGG	0.306067	3_3:+76149465	None:intergenic
AAACCCTAGTGAAATTGCAA+GGG	0.632392	3_3:+76150912	None:intergenic
AAACTCACGTGGAATATCAC+CGG	0.635934	3_3:+76151822	None:intergenic
AAAGATCATTGAACCATTAG+TGG	0.406255	3_3:+76150862	None:intergenic
AAAGCTCAATCTCCATATTG+GGG	0.619166	3_3:+76149466	None:intergenic
AAAGCTCTAAATCATGGTTG+AGG	0.564346	3_3:+76152217	None:intergenic
AAAGCTCTGATAGTATTCTG+GGG	0.660059	3_3:+76149665	None:intergenic
AAAGGTAGCTTGTGCCTGTT+TGG	0.419149	3_3:-76149433	Msa0473510:CDS
AAAGGTATGGTGCTAAGTGG+AGG	0.623763	3_3:+76152748	None:intergenic
AAAGGTGATGTTTATAGTTA+TGG	0.351102	3_3:-76149630	Msa0473510:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTTCCGAAAACAAAATCAA+CGG	-	chr3_3:76149797-76149816	Msa0473510:CDS	30.0%
TAGAGATAAACATTCACCAA+AGG	+	chr3_3:76149972-76149991	None:intergenic	30.0%
ATTTCAGCAAACAAGTACTT+CGG	-	chr3_3:76150004-76150023	Msa0473510:CDS	30.0%
AGATGAAGAAGATTCTTACA+AGG	+	chr3_3:76150052-76150071	None:intergenic	30.0%
CTTTCTTCTAATAATCTCAC+CGG	-	chr3_3:76150217-76150236	Msa0473510:CDS	30.0%
AGAGTTTGGGAATAATTTGA+AGG	-	chr3_3:76150486-76150505	Msa0473510:CDS	30.0%
CTGAGTAATAATTCTTTCTC+CGG	-	chr3_3:76150877-76150896	Msa0473510:CDS	30.0%
TAATAATTCTTTCTCCGGTA+GGG	-	chr3_3:76150882-76150901	Msa0473510:CDS	30.0%
AAAGATCATTGAACCATTAG+TGG	+	chr3_3:76151199-76151218	None:intergenic	30.0%
CTTTCATACAATAAGCTACA+AGG	-	chr3_3:76151369-76151388	Msa0473510:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	76149257	76152823	76149257	ID=Msa0473510;Name=Msa0473510
chr3_3	mRNA	76149257	76152823	76149257	ID=Msa0473510-mRNA-1;Parent=Msa0473510;Name=Msa0473510-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|1188
chr3_3	exon	76149257	76152823	76149257	ID=Msa0473510-mRNA-1:exon:19883;Parent=Msa0473510-mRNA-1
chr3_3	CDS	76149257	76152823	76149257	ID=Msa0473510-mRNA-1:cds;Parent=Msa0473510-mRNA-1

Gene Sequence

>Msa0473510

ATGAAACCCTTGTATAGCACAAACACTCTCCTACTCCTCCTTTCACTATTCCTCCTCCACTTAGCACCATACCTTTCTGCTTCATCTTCTCAAAGAGACCCAACTTCACAACTTCTCAACTTCAAACAATCTCTCCCAAACCCATCTCTTCTCCATAACTGGCTCCCAAATAATAACCCATGTTCATTCACTGGTATCACCTGCAACCAAACCACCATAACTTCTATAGACCTCACCTCAATCCCTCTCAACACCAACCTCACCACCATCACAACCTATCTCCTCACCCTCCCTCATCTCCAAATCCTCACCCTCAAATCCACAAACATCACATCCTCACCACCCATTCCTCTCTCCCACACCAAGTGCACCTCCACCCTCACCACACTAGATCTATCACTAAACACACTCTCTTCATCTTTCTCAGACCTCTCCTTCCTCTCAACATGCTTAAGCCTTAAGTCCCTCAACCTCTCCAACAACGACCTCCAATTCGATTCTCCTAAATGGGGTCTCGCTTCATCTCTTAAAACTCTCGACCTTTCCGAAAACAAAATCAACGGTCCAAATTTCTTCCACTGGTTCCTCAACCATGATTTAGAGCTTTTATCTCTCAGAGGTAACAAAATCACCGGAGAAATCGACTTCTCCGGTTACAACAATCTCCATCACTTAGACATTTCTTCCAACAATTTCTCTGTTTCAATTCCATCCTTTGGTGAATGTTTATCTCTACAGTACCTCGATATTTCAGCAAACAAGTACTTCGGTGACATTTCAAGAACACTGTCACCTTGTAAGAATCTTCTTCATCTCAACGTTTCTGGTAACCAGTTCACCGGTCCGGTACCTGAACTTCCCTCCGGCTCGTTACAGTTTCTTTATCTTGCTGCAAATCACTTCGCCGGAAAAATTCCGGCGCGTTTAGCGGAGCTTTGTTCAACTCTCGTGGAGCTTGATCTTTCTTCTAATAATCTCACCGGTGATATTCCACGTGAGTTTGGCGCGTGTACTTCGTTGACATCGTTTGATATTTCGAGCAACGCCTTCGCCGGTGAACTTCAGGTGGAAGTTTTATCGGAGATGAGTAGTTTGAAAGAGCTTGCGGTGGCGTTTAACGACTTTGTGGGCCCAGTTCCGGTGTCGCTGTCGAAGATAACGGGTTTGGAATTGTTAGATCTGAGTTCGAATAACTTCACCGGAACGATTCCGAAGTGGCTTTGTGAAGAAGAGTTTGGGAATAATTTGAAGGAACTTTACTTGCAAAATAACGGTTTCACGGGTTTTATTCCACCAACGCTAAGTAACTGTTCAAATCTCGTGGCTCTTGATTTGAGTTTCAATTATCTAACTGGAACCATTCCTCCAAGTTTGGGTTCTCTTTCGAAGCTTCGTGATTTAATCATGTGGTTGAATCAGCTTCATGGGGAAATTCCTCAAGAGCTTGGAAATATGGAGAGTTTAGAGAATTTGATTCTTGATTTCAATGAGTTGAGTGGAGGTATTCCATCTGGGTTGGTGAATTGCAGTAAGTTGAATTGGATCTCGTTGTCGAATAACAGGCTCAGTGGTGAGATTCCGGCATGGATTGGGAAGCTTTCGAATTTGGCTATTTTGAAGCTGAGTAATAATTCTTTCTCCGGTAGGGTTCCACCGGAGTTAGGAGATTGCCCTAGCTTGTTATGGTTGGATCTGAATACAAATTCACTCACAGGAACAATACCGCCGGAGTTGTTTAAGCAGTCGGGGAAAGTCACGGTGAATTTCATTAACGGGAAGACGTATGTTTACATTAAGAATGATGGAAGTAGAGAGTGCCATGGAGCTGGGAACTTGCTGGAGTTTGCAGGGATTAGTCAGAAAAAATTGAACAGAATTTCGACGAAGAACCCTTGCAATTTCACTAGGGTTTATGGAGGTAAGCTTCAGCCAACGTTTACCACTAATGGTTCAATGATCTTTTTGGATATTTCACACAACATGTTGTCTGGTACTATTCCTAAGGAAATTGGTGAAATGCACTATCTCTACATTTTGCATTTGAGCTATAATAACTTGTCCGGTAGCATTCCTCAAGAGCTTGGTACGATGAAGAATCTCAACATTCTTGATCTTTCATACAATAAGCTACAAGGTCAAATTCCACAAGCCTTGGCAGGGCTTTCACTGCTCACTGAGATTGACTTGTCCAACAATTTTCTCTACGGATTAATTCCGGAATCCGGTCAATTCGACACTTTTCCGCCTGTTAAGTTTCAGAACAACTCTGGTCTCTGCGGGGTCCCTCTTCCTCCGTGTGGGAAAGACGCCGGTGCTAATGCTGCACAGCATCAGAAGTCTCATAGGAGACAGGCATCTCTTGTAGGGAGTGTGGCAATGGGATTGCTTTTCTCTCTTTTCTGCGTTTTCGGTTTGATCATTATTGCTATTGAGACAAGAAAGAGGAGGAAGAAAAAGGAGGCTGCCATTGATAGCTACATTGACAATTCTCATTCTGGTAATGGCAATAATTCTGGCTGGAAACTGACCAGTGCCCGCGAAGCTCTCAGCATAAATCTTGCAACGTTTGAAAAGCCCCTCCGAAAGCTCACTTTTGCGGATCTTCTAGAGGCAACCAATGGCTTTCACAACGATAGTCTCATTGGTTCCGGTGGTTTCGGTGACGTGTATAAAGCTCAGCTGAAAGATGGAAGTGTTGTGGCCATCAAGAAACTAATACATGTAAGTGGACAAGGGGACAGGGAATTCACAGCAGAGATGGAAACCATTGGCAAAATCAAGCACAGAAACCTTGTTCCTCTTTTGGGATACTGCAAAGTTGGAGAGGAAAGATTGTTGGTCTATGAGTACATGAAATATGGAAGTCTAGAAGATGTCCTGCATGACCCGAAGAAAGCTGGGATCAAGATGAATTGGTCAGTGAGGAGGAAGATTGCAATTGGAGCTGCAAGAGGATTGGCTTTTCTTCACCATAGTTGTATCCCACACATCATTCATAGAGACATGAAATCAAGCAATGTGTTGCTTGATGAAAATTTGGAGGCAAGGGTCTCTGATTTTGGAATGGCTAGGATGATGAGCGCTATGGATACTCATTTAAGCGTAAGCACGTTGGCAGGCACACCGGGTTATGTTCCCCCAGAATACTATCAGAGCTTTAGATGCTCAACTAAAGGTGATGTTTATAGTTATGGTGTAGTTTTGTTGGAGTTGCTGACGGGGAGAAGACCGACGGACTCGGCTGATTTTGGTGATAACAATCTTGTTGGATGGGTTAAACAACATGCCAAACTTAAAATAAGTGATGTTTTTGATCCAGAGCTAATGAAAGAAGACCCCAATATGGAGATTGAGCTTTTACAGCATTTAAAGGTAGCTTGTGCCTGTTTGGATGATAGACCTTGGCGGCGACCTACAATGATTCAAGTCATGGCAATGTTCAAGGAAATACAAGCAGGTTCTGGGATGGATTCCCAATCTACTATAGCCACTGAAGATGAAGGTTTCAATGCCGTTGAGATGGTTGAAATGAGCATTAAAGAAGTCCCTGAATTAACCAAGCATTAG

Protein sequence

>Msa0473510

MKPLYSTNTLLLLLSLFLLHLAPYLSASSSQRDPTSQLLNFKQSLPNPSLLHNWLPNNNPCSFTGITCNQTTITSIDLTSIPLNTNLTTITTYLLTLPHLQILTLKSTNITSSPPIPLSHTKCTSTLTTLDLSLNTLSSSFSDLSFLSTCLSLKSLNLSNNDLQFDSPKWGLASSLKTLDLSENKINGPNFFHWFLNHDLELLSLRGNKITGEIDFSGYNNLHHLDISSNNFSVSIPSFGECLSLQYLDISANKYFGDISRTLSPCKNLLHLNVSGNQFTGPVPELPSGSLQFLYLAANHFAGKIPARLAELCSTLVELDLSSNNLTGDIPREFGACTSLTSFDISSNAFAGELQVEVLSEMSSLKELAVAFNDFVGPVPVSLSKITGLELLDLSSNNFTGTIPKWLCEEEFGNNLKELYLQNNGFTGFIPPTLSNCSNLVALDLSFNYLTGTIPPSLGSLSKLRDLIMWLNQLHGEIPQELGNMESLENLILDFNELSGGIPSGLVNCSKLNWISLSNNRLSGEIPAWIGKLSNLAILKLSNNSFSGRVPPELGDCPSLLWLDLNTNSLTGTIPPELFKQSGKVTVNFINGKTYVYIKNDGSRECHGAGNLLEFAGISQKKLNRISTKNPCNFTRVYGGKLQPTFTTNGSMIFLDISHNMLSGTIPKEIGEMHYLYILHLSYNNLSGSIPQELGTMKNLNILDLSYNKLQGQIPQALAGLSLLTEIDLSNNFLYGLIPESGQFDTFPPVKFQNNSGLCGVPLPPCGKDAGANAAQHQKSHRRQASLVGSVAMGLLFSLFCVFGLIIIAIETRKRRKKKEAAIDSYIDNSHSGNGNNSGWKLTSAREALSINLATFEKPLRKLTFADLLEATNGFHNDSLIGSGGFGDVYKAQLKDGSVVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDPKKAGIKMNWSVRRKIAIGAARGLAFLHHSCIPHIIHRDMKSSNVLLDENLEARVSDFGMARMMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGRRPTDSADFGDNNLVGWVKQHAKLKISDVFDPELMKEDPNMEIELLQHLKVACACLDDRPWRRPTMIQVMAMFKEIQAGSGMDSQSTIATEDEGFNAVEMVEMSIKEVPELTKH*