Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475800 | RYR59111.1 | 54.318 | 359 | 117 | 5 | 13 | 326 | 8 | 364 | 2.29e-125 | 374 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475800 | sp|P05332|YP20_BACLI | 35.088 | 171 | 102 | 4 | 160 | 324 | 8 | 175 | 2.44e-22 | 95.1 |
| Msa0475800 | sp|P05332|YP20_BACLI | 28.313 | 166 | 92 | 4 | 23 | 163 | 8 | 171 | 7.57e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475800 | A0A445D7U6 | 54.318 | 359 | 117 | 5 | 13 | 326 | 8 | 364 | 1.09e-125 | 374 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0475800 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0134600 | Msa0475800 | 0.928021 | 5.197058e-92 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475800 | MtrunA17_Chr5g0394631 | 50.617 | 405 | 118 | 10 | 1 | 327 | 1 | 401 | 8.47e-126 | 365 |
| Msa0475800 | MtrunA17_Chr1g0204951 | 91.935 | 186 | 15 | 0 | 142 | 327 | 5 | 190 | 4.60e-121 | 345 |
| Msa0475800 | MtrunA17_Chr1g0204951 | 78.395 | 162 | 20 | 2 | 1 | 147 | 1 | 162 | 6.28e-82 | 246 |
| Msa0475800 | MtrunA17_Chr1g0204971 | 82.447 | 188 | 33 | 0 | 140 | 327 | 3 | 190 | 3.87e-112 | 323 |
| Msa0475800 | MtrunA17_Chr1g0204971 | 87.654 | 162 | 5 | 2 | 1 | 147 | 1 | 162 | 2.30e-93 | 275 |
| Msa0475800 | MtrunA17_Chr5g0394621 | 64.674 | 184 | 61 | 2 | 146 | 327 | 9 | 190 | 7.48e-82 | 246 |
| Msa0475800 | MtrunA17_Chr5g0394621 | 57.317 | 164 | 51 | 3 | 1 | 147 | 1 | 162 | 3.62e-56 | 181 |
| Msa0475800 | MtrunA17_Chr7g0273661 | 48.077 | 156 | 76 | 2 | 156 | 309 | 4 | 156 | 2.52e-43 | 146 |
| Msa0475800 | MtrunA17_Chr7g0273661 | 42.466 | 146 | 64 | 3 | 19 | 147 | 4 | 146 | 1.31e-29 | 110 |
| Msa0475800 | MtrunA17_Chr7g0223351 | 42.169 | 166 | 93 | 2 | 159 | 324 | 7 | 169 | 9.98e-39 | 135 |
| Msa0475800 | MtrunA17_Chr7g0223351 | 38.298 | 141 | 69 | 2 | 22 | 147 | 7 | 144 | 4.07e-25 | 99.8 |
| Msa0475800 | MtrunA17_Chr7g0223361 | 41.071 | 168 | 97 | 2 | 154 | 321 | 2 | 167 | 2.36e-37 | 131 |
| Msa0475800 | MtrunA17_Chr7g0223361 | 37.500 | 144 | 77 | 3 | 17 | 147 | 2 | 145 | 4.11e-25 | 99.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475800 | AT2G32020.1 | 53.892 | 167 | 72 | 3 | 159 | 324 | 18 | 180 | 6.13e-57 | 182 |
| Msa0475800 | AT2G32020.1 | 45.652 | 138 | 63 | 2 | 22 | 147 | 18 | 155 | 2.55e-35 | 127 |
| Msa0475800 | AT2G32030.1 | 51.807 | 166 | 75 | 2 | 160 | 324 | 24 | 185 | 1.24e-56 | 182 |
| Msa0475800 | AT2G32030.1 | 40.764 | 157 | 81 | 2 | 3 | 147 | 4 | 160 | 1.97e-34 | 124 |
| Msa0475800 | AT3G22560.1 | 41.954 | 174 | 94 | 3 | 155 | 324 | 2 | 172 | 6.24e-37 | 130 |
| Msa0475800 | AT3G22560.1 | 39.597 | 149 | 68 | 3 | 18 | 147 | 2 | 147 | 4.45e-23 | 94.4 |
Find 74 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGTTGAAGCTGCATTTA+AGG | 0.195666 | 3_3:+79272080 | Msa0475800:CDS |
| TTCTTTGAGCTCCATGTATT+GGG | 0.213171 | 3_3:+79272026 | Msa0475800:CDS |
| CTCTTCTTTAGCATCTGATT+TGG | 0.248198 | 3_3:-79271731 | None:intergenic |
| CCGTCTTCTTTGTTTGTATA+AGG | 0.260514 | 3_3:-79273706 | None:intergenic |
| TGCTATGAGCTCCAAGTATT+GGG | 0.261207 | 3_3:+79273864 | Msa0475800:CDS |
| TTCAGATCTTGATGATGTTT+TGG | 0.285412 | 3_3:+79273639 | Msa0475800:CDS |
| ATTCTTTGAGCTCCATGTAT+TGG | 0.293943 | 3_3:+79272025 | Msa0475800:CDS |
| GCCTCAAGCCTCTCCAAGTA+TGG | 0.329009 | 3_3:-79272108 | None:intergenic |
| GAGATTTGCTTGCTATGTTT+TGG | 0.329625 | 3_3:-79271903 | None:intergenic |
| GAGATTTGCTTGCTATGTTT+TGG | 0.329625 | 3_3:-79273741 | None:intergenic |
| TAATGGGTCGAAGAGATATT+TGG | 0.336769 | 3_3:-79273612 | None:intergenic |
| ATCAAGATCTGAAAGACTAA+TGG | 0.348689 | 3_3:-79273629 | None:intergenic |
| GGGCAAAGGGATTGCCACTA+TGG | 0.352044 | 3_3:+79272047 | Msa0475800:CDS |
| TCAAGATCAGAAAGACTAAT+TGG | 0.352059 | 3_3:-79271790 | None:intergenic |
| TTTAGCATCTGATTTGGAAT+AGG | 0.367598 | 3_3:-79271725 | None:intergenic |
| AATACCTTTGCCCCAATACT+TGG | 0.403153 | 3_3:-79273875 | None:intergenic |
| ATTTAAGGAGTTTCCATACT+TGG | 0.408342 | 3_3:+79272095 | Msa0475800:CDS |
| TGCCTTCGCGATCGAGCAAT+CGG | 0.411073 | 3_3:+79273781 | Msa0475800:CDS |
| ACATAGCAAGCAAATCTCTA+TGG | 0.412043 | 3_3:+79271908 | Msa0475800:CDS |
| ACATAGCAAGCAAATCTCTA+TGG | 0.412043 | 3_3:+79273746 | Msa0475800:CDS |
| CAAAGGGTGTTGGAGAAGGC+TGG | 0.437360 | 3_3:+79272159 | Msa0475800:CDS |
| CAAAGGGTGTTGGAGAAGGC+TGG | 0.437360 | 3_3:+79273997 | Msa0475800:CDS |
| ATGCTATGAGCTCCAAGTAT+TGG | 0.448265 | 3_3:+79273863 | Msa0475800:CDS |
| TACCGAGTTCCAGGTGTGTT+CGG | 0.452367 | 3_3:+79271969 | Msa0475800:intron |
| TAATTGGTCGAAGAGAGATT+TGG | 0.457252 | 3_3:-79271774 | None:intergenic |
| CTTGAGCTTCAAGCCGCTCC+AGG | 0.458231 | 3_3:-79273951 | None:intergenic |
| CGGGACAAATCTGCTCAACT+TGG | 0.459831 | 3_3:+79272000 | Msa0475800:CDS |
| TCAAGATCTGAAAGACTAAT+GGG | 0.460408 | 3_3:-79273628 | None:intergenic |
| ACCTTATACAAACAAAGAAA+AGG | 0.461778 | 3_3:+79271867 | Msa0475800:CDS |
| GGGAACAAATCTGCTGAACT+TGG | 0.462467 | 3_3:+79273838 | Msa0475800:CDS |
| CAGAAAATATCTGTTCATCA+AGG | 0.472630 | 3_3:+79274041 | Msa0475800:CDS |
| GCTTCAAGCCGCTCCAGGTA+TGG | 0.487071 | 3_3:-79273946 | None:intergenic |
| AGCTCCATGTATTGGGGCAA+AGG | 0.494926 | 3_3:+79272033 | Msa0475800:CDS |
| AATCCCTTTGCCCCAATACA+TGG | 0.496567 | 3_3:-79272037 | None:intergenic |
| AGGTGTGTTCGGATAGATGC+CGG | 0.506000 | 3_3:+79271980 | Msa0475800:intron |
| TTCTCAAAGGGTGTTGGAGA+AGG | 0.511828 | 3_3:+79272155 | Msa0475800:CDS |
| TTCTCAAAGGGTGTTGGAGA+AGG | 0.511828 | 3_3:+79273993 | Msa0475800:CDS |
| GCCTTCGCGATAGAGCAATT+GGG | 0.515394 | 3_3:+79271944 | Msa0475800:intron |
| TAGAAAATGTGGCTTCTCAA+AGG | 0.517229 | 3_3:+79273980 | Msa0475800:CDS |
| GCTCCATGTATTGGGGCAAA+GGG | 0.517436 | 3_3:+79272034 | Msa0475800:CDS |
| ATCTTGATGATGTTATGTTG+TGG | 0.524636 | 3_3:+79271806 | Msa0475800:CDS |
| AGGTTCCCAAGTGCAATACT+TGG | 0.527166 | 3_3:-79271848 | None:intergenic |
| AGGTTCCCAAGTGCAATACT+TGG | 0.527166 | 3_3:-79273686 | None:intergenic |
| CAAGTTGAGCAGATTTGTCC+CGG | 0.527345 | 3_3:-79271999 | None:intergenic |
| CCTTATACAAACAAAGAAAA+GGG | 0.537241 | 3_3:+79271868 | Msa0475800:CDS |
| AGAAAATGTGGCTTCTCAAA+GGG | 0.537426 | 3_3:+79273981 | Msa0475800:CDS |
| AGCTCCAAGTATTGGGGCAA+AGG | 0.537498 | 3_3:+79273871 | Msa0475800:CDS |
| ATTTAAAGAGTTTCCATACC+TGG | 0.542410 | 3_3:+79273933 | Msa0475800:CDS |
| GCCTTCGCGATCGAGCAATC+GGG | 0.544699 | 3_3:+79273782 | Msa0475800:CDS |
| TGTGGCTTCTCAAAGGGTGT+TGG | 0.546349 | 3_3:+79272149 | Msa0475800:CDS |
| TGTGGCTTCTCAAAGGGTGT+TGG | 0.546349 | 3_3:+79273987 | Msa0475800:CDS |
| AGAAAATATCTGTTCATCAA+GGG | 0.554840 | 3_3:+79274042 | Msa0475800:CDS |
| TCCATACTTGGAGAGGCTTG+AGG | 0.557426 | 3_3:+79272107 | Msa0475800:CDS |
| CACATGTTTCACAACCATAG+TGG | 0.561077 | 3_3:-79272061 | None:intergenic |
| GCTTGAGGCTCGAGTTGATG+TGG | 0.569120 | 3_3:+79272122 | Msa0475800:CDS |
| TCAAGTTGATGTAGAAAATG+TGG | 0.572167 | 3_3:+79273969 | Msa0475800:CDS |
| TGGAAAATGTGGCTTCTCAA+AGG | 0.572207 | 3_3:+79272142 | Msa0475800:CDS |
| AGGAGTTTCCATACTTGGAG+AGG | 0.574247 | 3_3:+79272100 | Msa0475800:CDS |
| AAGAGTTTCCATACCTGGAG+CGG | 0.585589 | 3_3:+79273938 | Msa0475800:CDS |
| TCTTTGAGCTCCATGTATTG+GGG | 0.587210 | 3_3:+79272027 | Msa0475800:CDS |
| GGAAAATGTGGCTTCTCAAA+GGG | 0.588500 | 3_3:+79272143 | Msa0475800:CDS |
| AAGTGGCCAAGTATTGCACT+TGG | 0.595225 | 3_3:+79271842 | Msa0475800:CDS |
| CACACTTGTTGTCAAACAAG+TGG | 0.596019 | 3_3:+79273900 | Msa0475800:CDS |
| GGTGTGTTCGGATAGATGCC+GGG | 0.599178 | 3_3:+79271981 | Msa0475800:intron |
| AAGTGGCCAAGTATTGCACT+TGG | 0.601796 | 3_3:+79273680 | Msa0475800:CDS |
| GTGGACTAGTGATGCAAAAG+TGG | 0.603948 | 3_3:+79271825 | Msa0475800:CDS |
| CACTTGTTTGACAACAAGTG+TGG | 0.622968 | 3_3:-79273899 | None:intergenic |
| CCTTATACAAACAAAGAAGA+CGG | 0.623002 | 3_3:+79273706 | Msa0475800:CDS |
| ACCCGATTGCTCGATCGCGA+AGG | 0.639229 | 3_3:-79273783 | None:intergenic |
| GCTATGAGCTCCAAGTATTG+GGG | 0.656803 | 3_3:+79273865 | Msa0475800:CDS |
| TCGAGTTGATGTGGAAAATG+TGG | 0.669414 | 3_3:+79272131 | Msa0475800:CDS |
| AGTGGCCAAGTATTGCACTT+GGG | 0.670287 | 3_3:+79271843 | Msa0475800:CDS |
| AGTGGCCAAGTATTGCACTT+GGG | 0.670287 | 3_3:+79273681 | Msa0475800:CDS |
| CACTATGGTTGTGAAACATG+TGG | 0.680456 | 3_3:+79272062 | Msa0475800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAAAATCACTAAATTA+AGG | + | chr3_3:79273218-79273237 | Msa0475800:intron | 10.0% |
| !!! | TTTTAAAATCACTAAATTAA+GGG | + | chr3_3:79273219-79273238 | Msa0475800:intron | 10.0% |
| !!! | TTTTTAAAATCACTAAATTA+AGG | + | chr3_3:79273218-79273237 | Msa0475800:intron | 10.0% |
| !!! | TTTTAAAATCACTAAATTAA+GGG | + | chr3_3:79273219-79273238 | Msa0475800:intron | 10.0% |
| !! | CAAATAAGTGATTATATTTA+GGG | - | chr3_3:79272601-79272620 | None:intergenic | 15.0% |
| !! | TCAAATAAGTGATTATATTT+AGG | - | chr3_3:79272602-79272621 | None:intergenic | 15.0% |
| !! | TATATAGTAATTTGAAAAGA+GGG | - | chr3_3:79272638-79272657 | None:intergenic | 15.0% |
| !! | CAAATAAGTGATTATATTTA+GGG | - | chr3_3:79272601-79272620 | None:intergenic | 15.0% |
| !! | TCAAATAAGTGATTATATTT+AGG | - | chr3_3:79272602-79272621 | None:intergenic | 15.0% |
| !! | TATATAGTAATTTGAAAAGA+GGG | - | chr3_3:79272638-79272657 | None:intergenic | 15.0% |
| !! | AGAAAATATCTGTTCATTAA+GGG | + | chr3_3:79272204-79272223 | Msa0475800:intron | 20.0% |
| !!! | ATAGTTCTTATTTTGCAATA+CGG | + | chr3_3:79272417-79272436 | Msa0475800:intron | 20.0% |
| !! | ATAGAAGTTTATTTGAAAAG+AGG | - | chr3_3:79272576-79272595 | None:intergenic | 20.0% |
| !! | ATATAGTAATTTGAAAAGAG+GGG | - | chr3_3:79272637-79272656 | None:intergenic | 20.0% |
| !! | GTATATAGTAATTTGAAAAG+AGG | - | chr3_3:79272639-79272658 | None:intergenic | 20.0% |
| !!! | TCACTTTTATTAAGAAAAGT+TGG | - | chr3_3:79272798-79272817 | None:intergenic | 20.0% |
| !! | AATAGATTTATTCTAGTGAA+TGG | - | chr3_3:79273200-79273219 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTGACGGATATT+TGG | - | chr3_3:79273507-79273526 | None:intergenic | 20.0% |
| !! | AGAAAATATCTGTTCATTAA+GGG | + | chr3_3:79272204-79272223 | Msa0475800:intron | 20.0% |
| !!! | ATAGTTCTTATTTTGCAATA+CGG | + | chr3_3:79272417-79272436 | Msa0475800:intron | 20.0% |
| !! | ATAGAAGTTTATTTGAAAAG+AGG | - | chr3_3:79272576-79272595 | None:intergenic | 20.0% |
| !! | ATATAGTAATTTGAAAAGAG+GGG | - | chr3_3:79272637-79272656 | None:intergenic | 20.0% |
| !! | GTATATAGTAATTTGAAAAG+AGG | - | chr3_3:79272639-79272658 | None:intergenic | 20.0% |
| !!! | TCACTTTTATTAAGAAAAGT+TGG | - | chr3_3:79272798-79272817 | None:intergenic | 20.0% |
| !! | AATAGATTTATTCTAGTGAA+TGG | - | chr3_3:79273200-79273219 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTGACGGATATT+TGG | - | chr3_3:79273507-79273526 | None:intergenic | 20.0% |
| ! | ACCTTATACAAACAAAGAAA+AGG | + | chr3_3:79271867-79271886 | Msa0475800:CDS | 25.0% |
| ! | CCTTATACAAACAAAGAAAA+GGG | + | chr3_3:79271868-79271887 | Msa0475800:CDS | 25.0% |
| ! | CAGAAAATATCTGTTCATTA+AGG | + | chr3_3:79272203-79272222 | Msa0475800:intron | 25.0% |
| ! | GAAAATATCTGTTCATTAAG+GGG | + | chr3_3:79272205-79272224 | Msa0475800:intron | 25.0% |
| !!! | CATAATAGTTTGCTTGAATT+TGG | - | chr3_3:79272464-79272483 | None:intergenic | 25.0% |
| !! | GACTTGATGATATTAATTAG+AGG | - | chr3_3:79272687-79272706 | None:intergenic | 25.0% |
| ! | ATTAATATCATCAAGTCTCT+TGG | + | chr3_3:79272690-79272709 | Msa0475800:intron | 25.0% |
| ! | AAGATGCTTATATAAAGAGA+TGG | + | chr3_3:79272827-79272846 | Msa0475800:intron | 25.0% |
| ! | TGAGAATAAATGTTGAACAA+AGG | - | chr3_3:79272977-79272996 | None:intergenic | 25.0% |
| !!! | CATCACATATATTTCTAGTT+TGG | + | chr3_3:79273140-79273159 | Msa0475800:intron | 25.0% |
| ! | TGAGTTAATAAAATACGCAA+AGG | + | chr3_3:79273262-79273281 | Msa0475800:intron | 25.0% |
| ! | CGAAAATCATGAAAATTTGT+GGG | - | chr3_3:79273301-79273320 | None:intergenic | 25.0% |
| ! | ACGAAAATCATGAAAATTTG+TGG | - | chr3_3:79273302-79273321 | None:intergenic | 25.0% |
| !!! | TTGGAGATAATTTTAGAGTT+TGG | - | chr3_3:79273435-79273454 | None:intergenic | 25.0% |
| ! | AAGGATTGACTATAATTACT+AGG | - | chr3_3:79273471-79273490 | None:intergenic | 25.0% |
| ! | TAGTAATTATAGTCAATCCT+TGG | + | chr3_3:79273470-79273489 | Msa0475800:intron | 25.0% |
| !!! | GGCTTTGATTTTTTTTTTGA+CGG | - | chr3_3:79273515-79273534 | None:intergenic | 25.0% |
| !! | TTTTTCCATCATGGTTTATT+TGG | - | chr3_3:79273536-79273555 | None:intergenic | 25.0% |
| !!! | TATCGATTTCTTTTTGTGTT+CGG | + | chr3_3:79273807-79273826 | Msa0475800:CDS | 25.0% |
| ! | AGAAAATATCTGTTCATCAA+GGG | + | chr3_3:79274042-79274061 | Msa0475800:CDS | 25.0% |
| ! | ACCTTATACAAACAAAGAAA+AGG | + | chr3_3:79271867-79271886 | Msa0475800:CDS | 25.0% |
| ! | CCTTATACAAACAAAGAAAA+GGG | + | chr3_3:79271868-79271887 | Msa0475800:CDS | 25.0% |
| ! | CAGAAAATATCTGTTCATTA+AGG | + | chr3_3:79272203-79272222 | Msa0475800:intron | 25.0% |
| ! | GAAAATATCTGTTCATTAAG+GGG | + | chr3_3:79272205-79272224 | Msa0475800:intron | 25.0% |
| !!! | CATAATAGTTTGCTTGAATT+TGG | - | chr3_3:79272464-79272483 | None:intergenic | 25.0% |
| !! | GACTTGATGATATTAATTAG+AGG | - | chr3_3:79272687-79272706 | None:intergenic | 25.0% |
| ! | ATTAATATCATCAAGTCTCT+TGG | + | chr3_3:79272690-79272709 | Msa0475800:intron | 25.0% |
| ! | AAGATGCTTATATAAAGAGA+TGG | + | chr3_3:79272827-79272846 | Msa0475800:intron | 25.0% |
| ! | TGAGAATAAATGTTGAACAA+AGG | - | chr3_3:79272977-79272996 | None:intergenic | 25.0% |
| !!! | CATCACATATATTTCTAGTT+TGG | + | chr3_3:79273140-79273159 | Msa0475800:intron | 25.0% |
| ! | TGAGTTAATAAAATACGCAA+AGG | + | chr3_3:79273262-79273281 | Msa0475800:intron | 25.0% |
| ! | CGAAAATCATGAAAATTTGT+GGG | - | chr3_3:79273301-79273320 | None:intergenic | 25.0% |
| ! | ACGAAAATCATGAAAATTTG+TGG | - | chr3_3:79273302-79273321 | None:intergenic | 25.0% |
| !!! | TTGGAGATAATTTTAGAGTT+TGG | - | chr3_3:79273435-79273454 | None:intergenic | 25.0% |
| ! | AAGGATTGACTATAATTACT+AGG | - | chr3_3:79273471-79273490 | None:intergenic | 25.0% |
| ! | TAGTAATTATAGTCAATCCT+TGG | + | chr3_3:79273470-79273489 | Msa0475800:intron | 25.0% |
| !!! | GGCTTTGATTTTTTTTTTGA+CGG | - | chr3_3:79273515-79273534 | None:intergenic | 25.0% |
| !! | TTTTTCCATCATGGTTTATT+TGG | - | chr3_3:79273536-79273555 | None:intergenic | 25.0% |
| !!! | TATCGATTTCTTTTTGTGTT+CGG | + | chr3_3:79273807-79273826 | Msa0475800:CDS | 25.0% |
| ! | AGAAAATATCTGTTCATCAA+GGG | + | chr3_3:79274042-79274061 | Msa0475800:CDS | 25.0% |
| !! | TTTAGCATCTGATTTGGAAT+AGG | - | chr3_3:79271728-79271747 | None:intergenic | 30.0% |
| TCAAGATCAGAAAGACTAAT+TGG | - | chr3_3:79271793-79271812 | None:intergenic | 30.0% | |
| !! | ATCTTGATGATGTTATGTTG+TGG | + | chr3_3:79271806-79271825 | Msa0475800:CDS | 30.0% |
| !! | CCCTTTTCTTTGTTTGTATA+AGG | - | chr3_3:79271871-79271890 | None:intergenic | 30.0% |
| ATTTAAGGAGTTTCCATACT+TGG | + | chr3_3:79272095-79272114 | Msa0475800:CDS | 30.0% | |
| TATTTGAAAAGAGGAGGTAA+GGG | - | chr3_3:79272567-79272586 | None:intergenic | 30.0% | |
| TTATTTGAAAAGAGGAGGTA+AGG | - | chr3_3:79272568-79272587 | None:intergenic | 30.0% | |
| GAAGTTTATTTGAAAAGAGG+AGG | - | chr3_3:79272573-79272592 | None:intergenic | 30.0% | |
| ATACATACTCCACAAACAAA+GGG | + | chr3_3:79272738-79272757 | Msa0475800:intron | 30.0% | |
| CATTTATTCTCATCAAGAGA+TGG | + | chr3_3:79272985-79273004 | Msa0475800:intron | 30.0% | |
| TTGGCTCAGAATTATTAACT+CGG | + | chr3_3:79273013-79273032 | Msa0475800:intron | 30.0% | |
| !!! | AATTTTAGAGTTTGGAGGAA+AGG | - | chr3_3:79273427-79273446 | None:intergenic | 30.0% |
| !!! | GAGATAATTTTAGAGTTTGG+AGG | - | chr3_3:79273432-79273451 | None:intergenic | 30.0% |
| !! | TTTAGCATCTGATTTGGAAT+AGG | - | chr3_3:79271728-79271747 | None:intergenic | 30.0% |
| TCAAGATCTGAAAGACTAAT+GGG | - | chr3_3:79273631-79273650 | None:intergenic | 30.0% | |
| ATCAAGATCTGAAAGACTAA+TGG | - | chr3_3:79273632-79273651 | None:intergenic | 30.0% | |
| !!! | TTCAGATCTTGATGATGTTT+TGG | + | chr3_3:79273639-79273658 | Msa0475800:CDS | 30.0% |
| CCTTATACAAACAAAGAAGA+CGG | + | chr3_3:79273706-79273725 | Msa0475800:CDS | 30.0% | |
| ATTTAAAGAGTTTCCATACC+TGG | + | chr3_3:79273933-79273952 | Msa0475800:CDS | 30.0% | |
| !! | TCAAGTTGATGTAGAAAATG+TGG | + | chr3_3:79273969-79273988 | Msa0475800:CDS | 30.0% |
| CAGAAAATATCTGTTCATCA+AGG | + | chr3_3:79274041-79274060 | Msa0475800:CDS | 30.0% | |
| !! | TTTAGCATCTGATTTGGAAT+AGG | - | chr3_3:79271728-79271747 | None:intergenic | 30.0% |
| TCAAGATCAGAAAGACTAAT+TGG | - | chr3_3:79271793-79271812 | None:intergenic | 30.0% | |
| !! | ATCTTGATGATGTTATGTTG+TGG | + | chr3_3:79271806-79271825 | Msa0475800:CDS | 30.0% |
| !! | CCCTTTTCTTTGTTTGTATA+AGG | - | chr3_3:79271871-79271890 | None:intergenic | 30.0% |
| ATTTAAGGAGTTTCCATACT+TGG | + | chr3_3:79272095-79272114 | Msa0475800:CDS | 30.0% | |
| TATTTGAAAAGAGGAGGTAA+GGG | - | chr3_3:79272567-79272586 | None:intergenic | 30.0% | |
| TTATTTGAAAAGAGGAGGTA+AGG | - | chr3_3:79272568-79272587 | None:intergenic | 30.0% | |
| GAAGTTTATTTGAAAAGAGG+AGG | - | chr3_3:79272573-79272592 | None:intergenic | 30.0% | |
| ATACATACTCCACAAACAAA+GGG | + | chr3_3:79272738-79272757 | Msa0475800:intron | 30.0% | |
| CATTTATTCTCATCAAGAGA+TGG | + | chr3_3:79272985-79273004 | Msa0475800:intron | 30.0% | |
| TTGGCTCAGAATTATTAACT+CGG | + | chr3_3:79273013-79273032 | Msa0475800:intron | 30.0% | |
| !!! | AATTTTAGAGTTTGGAGGAA+AGG | - | chr3_3:79273427-79273446 | None:intergenic | 30.0% |
| !!! | GAGATAATTTTAGAGTTTGG+AGG | - | chr3_3:79273432-79273451 | None:intergenic | 30.0% |
| !! | TTTAGCATCTGATTTGGAAT+AGG | - | chr3_3:79271728-79271747 | None:intergenic | 30.0% |
| TCAAGATCTGAAAGACTAAT+GGG | - | chr3_3:79273631-79273650 | None:intergenic | 30.0% | |
| ATCAAGATCTGAAAGACTAA+TGG | - | chr3_3:79273632-79273651 | None:intergenic | 30.0% | |
| !!! | TTCAGATCTTGATGATGTTT+TGG | + | chr3_3:79273639-79273658 | Msa0475800:CDS | 30.0% |
| CCTTATACAAACAAAGAAGA+CGG | + | chr3_3:79273706-79273725 | Msa0475800:CDS | 30.0% | |
| ATTTAAAGAGTTTCCATACC+TGG | + | chr3_3:79273933-79273952 | Msa0475800:CDS | 30.0% | |
| !! | TCAAGTTGATGTAGAAAATG+TGG | + | chr3_3:79273969-79273988 | Msa0475800:CDS | 30.0% |
| CAGAAAATATCTGTTCATCA+AGG | + | chr3_3:79274041-79274060 | Msa0475800:CDS | 30.0% | |
| CTCTTCTTTAGCATCTGATT+TGG | - | chr3_3:79271734-79271753 | None:intergenic | 35.0% | |
| TAATTGGTCGAAGAGAGATT+TGG | - | chr3_3:79271777-79271796 | None:intergenic | 35.0% | |
| !!! | GAGATTTGCTTGCTATGTTT+TGG | - | chr3_3:79271906-79271925 | None:intergenic | 35.0% |
| ACATAGCAAGCAAATCTCTA+TGG | + | chr3_3:79271908-79271927 | Msa0475800:CDS | 35.0% | |
| ATTCTTTGAGCTCCATGTAT+TGG | + | chr3_3:79272025-79272044 | Msa0475800:CDS | 35.0% | |
| TTCTTTGAGCTCCATGTATT+GGG | + | chr3_3:79272026-79272045 | Msa0475800:CDS | 35.0% | |
| AAACATCTTCAGTACTAGTG+TGG | + | chr3_3:79272356-79272375 | Msa0475800:intron | 35.0% | |
| CATACATACTCCACAAACAA+AGG | + | chr3_3:79272737-79272756 | Msa0475800:intron | 35.0% | |
| TACATACTCCACAAACAAAG+GGG | + | chr3_3:79272739-79272758 | Msa0475800:intron | 35.0% | |
| ! | CTAAAATTCCCCTTTGTTTG+TGG | - | chr3_3:79272750-79272769 | None:intergenic | 35.0% |
| ! | CACAAACAAAGGGGAATTTT+AGG | + | chr3_3:79272748-79272767 | Msa0475800:intron | 35.0% |
| TTGGCAGTGTAGTTAATGTA+TGG | - | chr3_3:79272779-79272798 | None:intergenic | 35.0% | |
| ATTTGGTCCTTGTAGGTTAA+TGG | - | chr3_3:79272915-79272934 | None:intergenic | 35.0% | |
| !!! | GAAGTGGATTTGGTTTGTTT+TGG | - | chr3_3:79272943-79272962 | None:intergenic | 35.0% |
| !! | TGATTACTCTGAAGTGGATT+TGG | - | chr3_3:79272953-79272972 | None:intergenic | 35.0% |
| ! | AAAGGTTGATTACTCTGAAG+TGG | - | chr3_3:79272959-79272978 | None:intergenic | 35.0% |
| TCATCAAGAGATGGTAACTT+TGG | + | chr3_3:79272994-79273013 | Msa0475800:intron | 35.0% | |
| ACTAGTAAGAACTTCAGTCA+TGG | - | chr3_3:79273063-79273082 | None:intergenic | 35.0% | |
| ! | GTTCTTACTAGTTTGATGTC+TGG | + | chr3_3:79273071-79273090 | Msa0475800:intron | 35.0% |
| AATTTGTGGGACCATATTGA+TGG | - | chr3_3:79273288-79273307 | None:intergenic | 35.0% | |
| CCTATTCTTCACTTCATAGT+CGG | + | chr3_3:79273370-79273389 | Msa0475800:intron | 35.0% | |
| TTTGGAGGAAAGGAACTATA+TGG | - | chr3_3:79273417-79273436 | None:intergenic | 35.0% | |
| GTCAATCCTTGGATATATCA+AGG | + | chr3_3:79273481-79273500 | Msa0475800:intron | 35.0% | |
| !! | ATTTGGCCTTGATATATCCA+AGG | - | chr3_3:79273490-79273509 | None:intergenic | 35.0% |
| CAAAGCCAAATAAACCATGA+TGG | + | chr3_3:79273528-79273547 | Msa0475800:intron | 35.0% | |
| CTCTTCTTTAGCATCTGATT+TGG | - | chr3_3:79271734-79271753 | None:intergenic | 35.0% | |
| ! | TAATGGGTCGAAGAGATATT+TGG | - | chr3_3:79273615-79273634 | None:intergenic | 35.0% |
| !!! | ATCTTGATGATGTTTTGGTG+TGG | + | chr3_3:79273644-79273663 | Msa0475800:CDS | 35.0% |
| ! | CCGTCTTCTTTGTTTGTATA+AGG | - | chr3_3:79273709-79273728 | None:intergenic | 35.0% |
| !!! | GAGATTTGCTTGCTATGTTT+TGG | - | chr3_3:79271906-79271925 | None:intergenic | 35.0% |
| ACATAGCAAGCAAATCTCTA+TGG | + | chr3_3:79271908-79271927 | Msa0475800:CDS | 35.0% | |
| ! | TTTTTGTGTTCGGATAGATG+CGG | + | chr3_3:79273817-79273836 | Msa0475800:CDS | 35.0% |
| TAGAAAATGTGGCTTCTCAA+AGG | + | chr3_3:79273980-79273999 | Msa0475800:CDS | 35.0% | |
| AGAAAATGTGGCTTCTCAAA+GGG | + | chr3_3:79273981-79274000 | Msa0475800:CDS | 35.0% | |
| CAAGGGAAAAAGTAGAGATA+TGG | + | chr3_3:79274059-79274078 | Msa0475800:CDS | 35.0% | |
| CTCTTCTTTAGCATCTGATT+TGG | - | chr3_3:79271734-79271753 | None:intergenic | 35.0% | |
| TAATTGGTCGAAGAGAGATT+TGG | - | chr3_3:79271777-79271796 | None:intergenic | 35.0% | |
| !!! | GAGATTTGCTTGCTATGTTT+TGG | - | chr3_3:79271906-79271925 | None:intergenic | 35.0% |
| ACATAGCAAGCAAATCTCTA+TGG | + | chr3_3:79271908-79271927 | Msa0475800:CDS | 35.0% | |
| ATTCTTTGAGCTCCATGTAT+TGG | + | chr3_3:79272025-79272044 | Msa0475800:CDS | 35.0% | |
| TTCTTTGAGCTCCATGTATT+GGG | + | chr3_3:79272026-79272045 | Msa0475800:CDS | 35.0% | |
| AAACATCTTCAGTACTAGTG+TGG | + | chr3_3:79272356-79272375 | Msa0475800:intron | 35.0% | |
| CATACATACTCCACAAACAA+AGG | + | chr3_3:79272737-79272756 | Msa0475800:intron | 35.0% | |
| TACATACTCCACAAACAAAG+GGG | + | chr3_3:79272739-79272758 | Msa0475800:intron | 35.0% | |
| ! | CTAAAATTCCCCTTTGTTTG+TGG | - | chr3_3:79272750-79272769 | None:intergenic | 35.0% |
| ! | CACAAACAAAGGGGAATTTT+AGG | + | chr3_3:79272748-79272767 | Msa0475800:intron | 35.0% |
| TTGGCAGTGTAGTTAATGTA+TGG | - | chr3_3:79272779-79272798 | None:intergenic | 35.0% | |
| ATTTGGTCCTTGTAGGTTAA+TGG | - | chr3_3:79272915-79272934 | None:intergenic | 35.0% | |
| !!! | GAAGTGGATTTGGTTTGTTT+TGG | - | chr3_3:79272943-79272962 | None:intergenic | 35.0% |
| !! | TGATTACTCTGAAGTGGATT+TGG | - | chr3_3:79272953-79272972 | None:intergenic | 35.0% |
| ! | AAAGGTTGATTACTCTGAAG+TGG | - | chr3_3:79272959-79272978 | None:intergenic | 35.0% |
| TCATCAAGAGATGGTAACTT+TGG | + | chr3_3:79272994-79273013 | Msa0475800:intron | 35.0% | |
| ACTAGTAAGAACTTCAGTCA+TGG | - | chr3_3:79273063-79273082 | None:intergenic | 35.0% | |
| ! | GTTCTTACTAGTTTGATGTC+TGG | + | chr3_3:79273071-79273090 | Msa0475800:intron | 35.0% |
| AATTTGTGGGACCATATTGA+TGG | - | chr3_3:79273288-79273307 | None:intergenic | 35.0% | |
| CCTATTCTTCACTTCATAGT+CGG | + | chr3_3:79273370-79273389 | Msa0475800:intron | 35.0% | |
| TTTGGAGGAAAGGAACTATA+TGG | - | chr3_3:79273417-79273436 | None:intergenic | 35.0% | |
| GTCAATCCTTGGATATATCA+AGG | + | chr3_3:79273481-79273500 | Msa0475800:intron | 35.0% | |
| !! | ATTTGGCCTTGATATATCCA+AGG | - | chr3_3:79273490-79273509 | None:intergenic | 35.0% |
| CAAAGCCAAATAAACCATGA+TGG | + | chr3_3:79273528-79273547 | Msa0475800:intron | 35.0% | |
| CTCTTCTTTAGCATCTGATT+TGG | - | chr3_3:79271734-79271753 | None:intergenic | 35.0% | |
| ! | TAATGGGTCGAAGAGATATT+TGG | - | chr3_3:79273615-79273634 | None:intergenic | 35.0% |
| !!! | ATCTTGATGATGTTTTGGTG+TGG | + | chr3_3:79273644-79273663 | Msa0475800:CDS | 35.0% |
| ! | CCGTCTTCTTTGTTTGTATA+AGG | - | chr3_3:79273709-79273728 | None:intergenic | 35.0% |
| !!! | GAGATTTGCTTGCTATGTTT+TGG | - | chr3_3:79271906-79271925 | None:intergenic | 35.0% |
| ACATAGCAAGCAAATCTCTA+TGG | + | chr3_3:79271908-79271927 | Msa0475800:CDS | 35.0% | |
| ! | TTTTTGTGTTCGGATAGATG+CGG | + | chr3_3:79273817-79273836 | Msa0475800:CDS | 35.0% |
| TAGAAAATGTGGCTTCTCAA+AGG | + | chr3_3:79273980-79273999 | Msa0475800:CDS | 35.0% | |
| AGAAAATGTGGCTTCTCAAA+GGG | + | chr3_3:79273981-79274000 | Msa0475800:CDS | 35.0% | |
| CAAGGGAAAAAGTAGAGATA+TGG | + | chr3_3:79274059-79274078 | Msa0475800:CDS | 35.0% | |
| TCTTTGAGCTCCATGTATTG+GGG | + | chr3_3:79272027-79272046 | Msa0475800:CDS | 40.0% | |
| CACATGTTTCACAACCATAG+TGG | - | chr3_3:79272064-79272083 | None:intergenic | 40.0% | |
| CACTATGGTTGTGAAACATG+TGG | + | chr3_3:79272062-79272081 | Msa0475800:CDS | 40.0% | |
| TGTGGTTGAAGCTGCATTTA+AGG | + | chr3_3:79272080-79272099 | Msa0475800:CDS | 40.0% | |
| !! | TCGAGTTGATGTGGAAAATG+TGG | + | chr3_3:79272131-79272150 | Msa0475800:CDS | 40.0% |
| TGGAAAATGTGGCTTCTCAA+AGG | + | chr3_3:79272142-79272161 | Msa0475800:CDS | 40.0% | |
| GGAAAATGTGGCTTCTCAAA+GGG | + | chr3_3:79272143-79272162 | Msa0475800:CDS | 40.0% | |
| GCAATCTCCATTAACCTACA+AGG | + | chr3_3:79272905-79272924 | Msa0475800:intron | 40.0% | |
| !!! | GGTTTGTTTTGGCTGCTATT+TGG | - | chr3_3:79272932-79272951 | None:intergenic | 40.0% |
| ATACGCAAAGGCCATCAATA+TGG | + | chr3_3:79273274-79273293 | Msa0475800:intron | 40.0% | |
| CCGACTATGAAGTGAAGAAT+AGG | - | chr3_3:79273373-79273392 | None:intergenic | 40.0% | |
| ACTAGGTAGATCTTGTTGCT+TGG | - | chr3_3:79273454-79273473 | None:intergenic | 40.0% | |
| !!! | GGTAGCAGTTTTTTCCATCA+TGG | - | chr3_3:79273545-79273564 | None:intergenic | 40.0% |
| GTGGACAAGTGATGAAAAAG+TGG | + | chr3_3:79273663-79273682 | Msa0475800:CDS | 40.0% | |
| ! | TTTTGTGTTCGGATAGATGC+GGG | + | chr3_3:79273818-79273837 | Msa0475800:CDS | 40.0% |
| ATGCTATGAGCTCCAAGTAT+TGG | + | chr3_3:79273863-79273882 | Msa0475800:CDS | 40.0% | |
| TGCTATGAGCTCCAAGTATT+GGG | + | chr3_3:79273864-79273883 | Msa0475800:CDS | 40.0% | |
| AATACCTTTGCCCCAATACT+TGG | - | chr3_3:79273878-79273897 | None:intergenic | 40.0% | |
| CACTTGTTTGACAACAAGTG+TGG | - | chr3_3:79273902-79273921 | None:intergenic | 40.0% | |
| !! | CACACTTGTTGTCAAACAAG+TGG | + | chr3_3:79273900-79273919 | Msa0475800:CDS | 40.0% |
| TCTTTGAGCTCCATGTATTG+GGG | + | chr3_3:79272027-79272046 | Msa0475800:CDS | 40.0% | |
| CACATGTTTCACAACCATAG+TGG | - | chr3_3:79272064-79272083 | None:intergenic | 40.0% | |
| CACTATGGTTGTGAAACATG+TGG | + | chr3_3:79272062-79272081 | Msa0475800:CDS | 40.0% | |
| TGTGGTTGAAGCTGCATTTA+AGG | + | chr3_3:79272080-79272099 | Msa0475800:CDS | 40.0% | |
| !! | TCGAGTTGATGTGGAAAATG+TGG | + | chr3_3:79272131-79272150 | Msa0475800:CDS | 40.0% |
| TGGAAAATGTGGCTTCTCAA+AGG | + | chr3_3:79272142-79272161 | Msa0475800:CDS | 40.0% | |
| GGAAAATGTGGCTTCTCAAA+GGG | + | chr3_3:79272143-79272162 | Msa0475800:CDS | 40.0% | |
| GCAATCTCCATTAACCTACA+AGG | + | chr3_3:79272905-79272924 | Msa0475800:intron | 40.0% | |
| !!! | GGTTTGTTTTGGCTGCTATT+TGG | - | chr3_3:79272932-79272951 | None:intergenic | 40.0% |
| ATACGCAAAGGCCATCAATA+TGG | + | chr3_3:79273274-79273293 | Msa0475800:intron | 40.0% | |
| CCGACTATGAAGTGAAGAAT+AGG | - | chr3_3:79273373-79273392 | None:intergenic | 40.0% | |
| ACTAGGTAGATCTTGTTGCT+TGG | - | chr3_3:79273454-79273473 | None:intergenic | 40.0% | |
| !!! | GGTAGCAGTTTTTTCCATCA+TGG | - | chr3_3:79273545-79273564 | None:intergenic | 40.0% |
| GTGGACAAGTGATGAAAAAG+TGG | + | chr3_3:79273663-79273682 | Msa0475800:CDS | 40.0% | |
| ! | TTTTGTGTTCGGATAGATGC+GGG | + | chr3_3:79273818-79273837 | Msa0475800:CDS | 40.0% |
| ATGCTATGAGCTCCAAGTAT+TGG | + | chr3_3:79273863-79273882 | Msa0475800:CDS | 40.0% | |
| TGCTATGAGCTCCAAGTATT+GGG | + | chr3_3:79273864-79273883 | Msa0475800:CDS | 40.0% | |
| AATACCTTTGCCCCAATACT+TGG | - | chr3_3:79273878-79273897 | None:intergenic | 40.0% | |
| CACTTGTTTGACAACAAGTG+TGG | - | chr3_3:79273902-79273921 | None:intergenic | 40.0% | |
| !! | CACACTTGTTGTCAAACAAG+TGG | + | chr3_3:79273900-79273919 | Msa0475800:CDS | 40.0% |
| !! | GTGGACTAGTGATGCAAAAG+TGG | + | chr3_3:79271825-79271844 | Msa0475800:CDS | 45.0% |
| ! | AAGTGGCCAAGTATTGCACT+TGG | + | chr3_3:79271842-79271861 | Msa0475800:CDS | 45.0% |
| ! | AGTGGCCAAGTATTGCACTT+GGG | + | chr3_3:79271843-79271862 | Msa0475800:CDS | 45.0% |
| AGGTTCCCAAGTGCAATACT+TGG | - | chr3_3:79271851-79271870 | None:intergenic | 45.0% | |
| ! | CAAGTTGAGCAGATTTGTCC+CGG | - | chr3_3:79272002-79272021 | None:intergenic | 45.0% |
| AATCCCTTTGCCCCAATACA+TGG | - | chr3_3:79272040-79272059 | None:intergenic | 45.0% | |
| AGGAGTTTCCATACTTGGAG+AGG | + | chr3_3:79272100-79272119 | Msa0475800:CDS | 45.0% | |
| !! | TTCTCAAAGGGTGTTGGAGA+AGG | + | chr3_3:79272155-79272174 | Msa0475800:CDS | 45.0% |
| !!! | TGGAGAAGGCTGGTTTTGAA+AGG | + | chr3_3:79272169-79272188 | Msa0475800:CDS | 45.0% |
| !!! | GGAGAAGGCTGGTTTTGAAA+GGG | + | chr3_3:79272170-79272189 | Msa0475800:CDS | 45.0% |
| !!! | AAGGCTGGTTTTGAAAGGGA+AGG | + | chr3_3:79272174-79272193 | Msa0475800:CDS | 45.0% |
| TGAAAAGAGGAGGTAAGGGA+AGG | - | chr3_3:79272563-79272582 | None:intergenic | 45.0% | |
| ! | CTCTGAAGATGTTGGCACAA+AGG | - | chr3_3:79272886-79272905 | None:intergenic | 45.0% |
| !! | GGAGATTGCTCTGAAGATGT+TGG | - | chr3_3:79272894-79272913 | None:intergenic | 45.0% |
| CACTTCATAGTCGGTCATAG+TGG | + | chr3_3:79273379-79273398 | Msa0475800:intron | 45.0% | |
| ! | AAGTGGCCAAGTATTGCACT+TGG | + | chr3_3:79271842-79271861 | Msa0475800:CDS | 45.0% |
| ! | AGTGGCCAAGTATTGCACTT+GGG | + | chr3_3:79271843-79271862 | Msa0475800:CDS | 45.0% |
| AGGTTCCCAAGTGCAATACT+TGG | - | chr3_3:79271851-79271870 | None:intergenic | 45.0% | |
| GGGAACAAATCTGCTGAACT+TGG | + | chr3_3:79273838-79273857 | Msa0475800:CDS | 45.0% | |
| ! | GCTATGAGCTCCAAGTATTG+GGG | + | chr3_3:79273865-79273884 | Msa0475800:CDS | 45.0% |
| AAGAGTTTCCATACCTGGAG+CGG | + | chr3_3:79273938-79273957 | Msa0475800:CDS | 45.0% | |
| !! | TTCTCAAAGGGTGTTGGAGA+AGG | + | chr3_3:79272155-79272174 | Msa0475800:CDS | 45.0% |
| !!! | TGGAGAAGGCTGGTTTTCAA+AGG | + | chr3_3:79274007-79274026 | Msa0475800:CDS | 45.0% |
| !!! | GGAGAAGGCTGGTTTTCAAA+GGG | + | chr3_3:79274008-79274027 | Msa0475800:CDS | 45.0% |
| !!! | AAGGCTGGTTTTCAAAGGGA+GGG | + | chr3_3:79274012-79274031 | Msa0475800:CDS | 45.0% |
| !! | GTGGACTAGTGATGCAAAAG+TGG | + | chr3_3:79271825-79271844 | Msa0475800:CDS | 45.0% |
| ! | AAGTGGCCAAGTATTGCACT+TGG | + | chr3_3:79271842-79271861 | Msa0475800:CDS | 45.0% |
| ! | AGTGGCCAAGTATTGCACTT+GGG | + | chr3_3:79271843-79271862 | Msa0475800:CDS | 45.0% |
| AGGTTCCCAAGTGCAATACT+TGG | - | chr3_3:79271851-79271870 | None:intergenic | 45.0% | |
| ! | CAAGTTGAGCAGATTTGTCC+CGG | - | chr3_3:79272002-79272021 | None:intergenic | 45.0% |
| AATCCCTTTGCCCCAATACA+TGG | - | chr3_3:79272040-79272059 | None:intergenic | 45.0% | |
| AGGAGTTTCCATACTTGGAG+AGG | + | chr3_3:79272100-79272119 | Msa0475800:CDS | 45.0% | |
| !! | TTCTCAAAGGGTGTTGGAGA+AGG | + | chr3_3:79272155-79272174 | Msa0475800:CDS | 45.0% |
| !!! | TGGAGAAGGCTGGTTTTGAA+AGG | + | chr3_3:79272169-79272188 | Msa0475800:CDS | 45.0% |
| !!! | GGAGAAGGCTGGTTTTGAAA+GGG | + | chr3_3:79272170-79272189 | Msa0475800:CDS | 45.0% |
| !!! | AAGGCTGGTTTTGAAAGGGA+AGG | + | chr3_3:79272174-79272193 | Msa0475800:CDS | 45.0% |
| TGAAAAGAGGAGGTAAGGGA+AGG | - | chr3_3:79272563-79272582 | None:intergenic | 45.0% | |
| ! | CTCTGAAGATGTTGGCACAA+AGG | - | chr3_3:79272886-79272905 | None:intergenic | 45.0% |
| !! | GGAGATTGCTCTGAAGATGT+TGG | - | chr3_3:79272894-79272913 | None:intergenic | 45.0% |
| CACTTCATAGTCGGTCATAG+TGG | + | chr3_3:79273379-79273398 | Msa0475800:intron | 45.0% | |
| ! | AAGTGGCCAAGTATTGCACT+TGG | + | chr3_3:79271842-79271861 | Msa0475800:CDS | 45.0% |
| ! | AGTGGCCAAGTATTGCACTT+GGG | + | chr3_3:79271843-79271862 | Msa0475800:CDS | 45.0% |
| AGGTTCCCAAGTGCAATACT+TGG | - | chr3_3:79271851-79271870 | None:intergenic | 45.0% | |
| GGGAACAAATCTGCTGAACT+TGG | + | chr3_3:79273838-79273857 | Msa0475800:CDS | 45.0% | |
| ! | GCTATGAGCTCCAAGTATTG+GGG | + | chr3_3:79273865-79273884 | Msa0475800:CDS | 45.0% |
| AAGAGTTTCCATACCTGGAG+CGG | + | chr3_3:79273938-79273957 | Msa0475800:CDS | 45.0% | |
| !! | TTCTCAAAGGGTGTTGGAGA+AGG | + | chr3_3:79272155-79272174 | Msa0475800:CDS | 45.0% |
| !!! | TGGAGAAGGCTGGTTTTCAA+AGG | + | chr3_3:79274007-79274026 | Msa0475800:CDS | 45.0% |
| !!! | GGAGAAGGCTGGTTTTCAAA+GGG | + | chr3_3:79274008-79274027 | Msa0475800:CDS | 45.0% |
| !!! | AAGGCTGGTTTTCAAAGGGA+GGG | + | chr3_3:79274012-79274031 | Msa0475800:CDS | 45.0% |
| TGCCTTCGCGATAGAGCAAT+TGG | + | chr3_3:79271943-79271962 | Msa0475800:intron | 50.0% | |
| GCCTTCGCGATAGAGCAATT+GGG | + | chr3_3:79271944-79271963 | Msa0475800:intron | 50.0% | |
| ACCCAATTGCTCTATCGCGA+AGG | - | chr3_3:79271948-79271967 | None:intergenic | 50.0% | |
| AATTGGGTGTACCGAGTTCC+AGG | + | chr3_3:79271960-79271979 | Msa0475800:intron | 50.0% | |
| TACCGAGTTCCAGGTGTGTT+CGG | + | chr3_3:79271969-79271988 | Msa0475800:intron | 50.0% | |
| ATCCGAACACACCTGGAACT+CGG | - | chr3_3:79271974-79271993 | None:intergenic | 50.0% | |
| AGGTGTGTTCGGATAGATGC+CGG | + | chr3_3:79271980-79271999 | Msa0475800:intron | 50.0% | |
| CGGGACAAATCTGCTCAACT+TGG | + | chr3_3:79272000-79272019 | Msa0475800:CDS | 50.0% | |
| AGCTCCATGTATTGGGGCAA+AGG | + | chr3_3:79272033-79272052 | Msa0475800:CDS | 50.0% | |
| GCTCCATGTATTGGGGCAAA+GGG | + | chr3_3:79272034-79272053 | Msa0475800:CDS | 50.0% | |
| TCCATACTTGGAGAGGCTTG+AGG | + | chr3_3:79272107-79272126 | Msa0475800:CDS | 50.0% | |
| ! | TGTGGCTTCTCAAAGGGTGT+TGG | + | chr3_3:79272149-79272168 | Msa0475800:CDS | 50.0% |
| ! | GGCTGCTATTTGGTCCTTGT+AGG | - | chr3_3:79272922-79272941 | None:intergenic | 50.0% |
| !! | AGCTCCAAGTATTGGGGCAA+AGG | + | chr3_3:79273871-79273890 | Msa0475800:CDS | 50.0% |
| ! | TGTGGCTTCTCAAAGGGTGT+TGG | + | chr3_3:79272149-79272168 | Msa0475800:CDS | 50.0% |
| !!! | GAAGGCTGGTTTTCAAAGGG+AGG | + | chr3_3:79274011-79274030 | Msa0475800:CDS | 50.0% |
| TGCCTTCGCGATAGAGCAAT+TGG | + | chr3_3:79271943-79271962 | Msa0475800:intron | 50.0% | |
| GCCTTCGCGATAGAGCAATT+GGG | + | chr3_3:79271944-79271963 | Msa0475800:intron | 50.0% | |
| ACCCAATTGCTCTATCGCGA+AGG | - | chr3_3:79271948-79271967 | None:intergenic | 50.0% | |
| AATTGGGTGTACCGAGTTCC+AGG | + | chr3_3:79271960-79271979 | Msa0475800:intron | 50.0% | |
| TACCGAGTTCCAGGTGTGTT+CGG | + | chr3_3:79271969-79271988 | Msa0475800:intron | 50.0% | |
| ATCCGAACACACCTGGAACT+CGG | - | chr3_3:79271974-79271993 | None:intergenic | 50.0% | |
| AGGTGTGTTCGGATAGATGC+CGG | + | chr3_3:79271980-79271999 | Msa0475800:intron | 50.0% | |
| CGGGACAAATCTGCTCAACT+TGG | + | chr3_3:79272000-79272019 | Msa0475800:CDS | 50.0% | |
| AGCTCCATGTATTGGGGCAA+AGG | + | chr3_3:79272033-79272052 | Msa0475800:CDS | 50.0% | |
| GCTCCATGTATTGGGGCAAA+GGG | + | chr3_3:79272034-79272053 | Msa0475800:CDS | 50.0% | |
| TCCATACTTGGAGAGGCTTG+AGG | + | chr3_3:79272107-79272126 | Msa0475800:CDS | 50.0% | |
| ! | TGTGGCTTCTCAAAGGGTGT+TGG | + | chr3_3:79272149-79272168 | Msa0475800:CDS | 50.0% |
| ! | GGCTGCTATTTGGTCCTTGT+AGG | - | chr3_3:79272922-79272941 | None:intergenic | 50.0% |
| !! | AGCTCCAAGTATTGGGGCAA+AGG | + | chr3_3:79273871-79273890 | Msa0475800:CDS | 50.0% |
| ! | TGTGGCTTCTCAAAGGGTGT+TGG | + | chr3_3:79272149-79272168 | Msa0475800:CDS | 50.0% |
| !!! | GAAGGCTGGTTTTCAAAGGG+AGG | + | chr3_3:79274011-79274030 | Msa0475800:CDS | 50.0% |
| GGCATCTATCCGAACACACC+TGG | - | chr3_3:79271981-79272000 | None:intergenic | 55.0% | |
| GGTGTGTTCGGATAGATGCC+GGG | + | chr3_3:79271981-79272000 | Msa0475800:intron | 55.0% | |
| GGGCAAAGGGATTGCCACTA+TGG | + | chr3_3:79272047-79272066 | Msa0475800:CDS | 55.0% | |
| GCCTCAAGCCTCTCCAAGTA+TGG | - | chr3_3:79272111-79272130 | None:intergenic | 55.0% | |
| !! | GCTTGAGGCTCGAGTTGATG+TGG | + | chr3_3:79272122-79272141 | Msa0475800:CDS | 55.0% |
| !! | CAAAGGGTGTTGGAGAAGGC+TGG | + | chr3_3:79272159-79272178 | Msa0475800:CDS | 55.0% |
| TGCCTTCGCGATCGAGCAAT+CGG | + | chr3_3:79273781-79273800 | Msa0475800:CDS | 55.0% | |
| !! | CAAAGGGTGTTGGAGAAGGC+TGG | + | chr3_3:79272159-79272178 | Msa0475800:CDS | 55.0% |
| GGCATCTATCCGAACACACC+TGG | - | chr3_3:79271981-79272000 | None:intergenic | 55.0% | |
| GGTGTGTTCGGATAGATGCC+GGG | + | chr3_3:79271981-79272000 | Msa0475800:intron | 55.0% | |
| GGGCAAAGGGATTGCCACTA+TGG | + | chr3_3:79272047-79272066 | Msa0475800:CDS | 55.0% | |
| GCCTCAAGCCTCTCCAAGTA+TGG | - | chr3_3:79272111-79272130 | None:intergenic | 55.0% | |
| !! | GCTTGAGGCTCGAGTTGATG+TGG | + | chr3_3:79272122-79272141 | Msa0475800:CDS | 55.0% |
| !! | CAAAGGGTGTTGGAGAAGGC+TGG | + | chr3_3:79272159-79272178 | Msa0475800:CDS | 55.0% |
| TGCCTTCGCGATCGAGCAAT+CGG | + | chr3_3:79273781-79273800 | Msa0475800:CDS | 55.0% | |
| !! | CAAAGGGTGTTGGAGAAGGC+TGG | + | chr3_3:79272159-79272178 | Msa0475800:CDS | 55.0% |
| GCCTTCGCGATCGAGCAATC+GGG | + | chr3_3:79273782-79273801 | Msa0475800:CDS | 60.0% | |
| ACCCGATTGCTCGATCGCGA+AGG | - | chr3_3:79273786-79273805 | None:intergenic | 60.0% | |
| GCTTCAAGCCGCTCCAGGTA+TGG | - | chr3_3:79273949-79273968 | None:intergenic | 60.0% | |
| CTTGAGCTTCAAGCCGCTCC+AGG | - | chr3_3:79273954-79273973 | None:intergenic | 60.0% | |
| GCCTTCGCGATCGAGCAATC+GGG | + | chr3_3:79273782-79273801 | Msa0475800:CDS | 60.0% | |
| ACCCGATTGCTCGATCGCGA+AGG | - | chr3_3:79273786-79273805 | None:intergenic | 60.0% | |
| GCTTCAAGCCGCTCCAGGTA+TGG | - | chr3_3:79273949-79273968 | None:intergenic | 60.0% | |
| CTTGAGCTTCAAGCCGCTCC+AGG | - | chr3_3:79273954-79273973 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 79271709 | 79274119 | 79271709 | ID=Msa0475800;Name=Msa0475800 |
| chr3_3 | mRNA | 79271709 | 79274119 | 79271709 | ID=Msa0475800-mRNA-1;Parent=Msa0475800;Name=Msa0475800-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|0|0|4|0|327 |
| chr3_3 | exon | 79271709 | 79271929 | 79271709 | ID=Msa0475800-mRNA-1:exon:21513;Parent=Msa0475800-mRNA-1 |
| chr3_3 | exon | 79271959 | 79271965 | 79271959 | ID=Msa0475800-mRNA-1:exon:21514;Parent=Msa0475800-mRNA-1 |
| chr3_3 | exon | 79271982 | 79272195 | 79271982 | ID=Msa0475800-mRNA-1:exon:21515;Parent=Msa0475800-mRNA-1 |
| chr3_3 | exon | 79273578 | 79274119 | 79273578 | ID=Msa0475800-mRNA-1:exon:21516;Parent=Msa0475800-mRNA-1 |
| chr3_3 | CDS | 79271709 | 79271929 | 79271709 | ID=Msa0475800-mRNA-1:cds;Parent=Msa0475800-mRNA-1 |
| chr3_3 | CDS | 79271959 | 79271965 | 79271959 | ID=Msa0475800-mRNA-1:cds;Parent=Msa0475800-mRNA-1 |
| chr3_3 | CDS | 79271982 | 79272195 | 79271982 | ID=Msa0475800-mRNA-1:cds;Parent=Msa0475800-mRNA-1 |
| chr3_3 | CDS | 79273578 | 79274119 | 79273578 | ID=Msa0475800-mRNA-1:cds;Parent=Msa0475800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
