Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478720 | XP_013462118.1 | 97.967 | 492 | 10 | 0 | 1 | 492 | 1 | 492 | 0.0 | 989 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478720 | sp|Q8RY60|Y1733_ARATH | 66.465 | 495 | 144 | 5 | 1 | 479 | 1 | 489 | 0.0 | 645 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478720 | A0A072V458 | 97.967 | 492 | 10 | 0 | 1 | 492 | 1 | 492 | 0.0 | 989 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0476880 | Msa0478720 | 0.803643 | 3.160777e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478720 | MtrunA17_Chr3g0141551 | 97.967 | 492 | 10 | 0 | 1 | 492 | 1 | 492 | 0.0 | 989 |
| Msa0478720 | MtrunA17_Chr4g0049251 | 56.674 | 427 | 179 | 3 | 1 | 427 | 1 | 421 | 9.97e-167 | 477 |
| Msa0478720 | MtrunA17_Chr2g0280251 | 56.440 | 427 | 184 | 1 | 1 | 427 | 1 | 425 | 7.61e-161 | 462 |
| Msa0478720 | MtrunA17_Chr4g0065751 | 50.575 | 435 | 188 | 9 | 9 | 436 | 31 | 445 | 1.80e-141 | 416 |
| Msa0478720 | MtrunA17_Chr6g0469911 | 44.050 | 479 | 241 | 6 | 7 | 480 | 29 | 485 | 3.16e-139 | 410 |
| Msa0478720 | MtrunA17_Chr6g0467811 | 48.724 | 431 | 182 | 6 | 9 | 434 | 27 | 423 | 1.24e-134 | 397 |
| Msa0478720 | MtrunA17_Chr7g0259621 | 46.882 | 433 | 203 | 10 | 9 | 431 | 31 | 446 | 4.79e-117 | 352 |
| Msa0478720 | MtrunA17_Chr6g0469771 | 56.115 | 278 | 122 | 0 | 4 | 281 | 5 | 282 | 4.91e-112 | 332 |
| Msa0478720 | MtrunA17_Chr7g0217521 | 48.905 | 274 | 138 | 2 | 9 | 281 | 31 | 303 | 1.51e-83 | 260 |
| Msa0478720 | MtrunA17_Chr7g0217531 | 34.118 | 170 | 64 | 6 | 279 | 433 | 4 | 140 | 2.18e-17 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478720 | AT1G47330.1 | 66.465 | 495 | 144 | 5 | 1 | 479 | 1 | 489 | 0.0 | 645 |
| Msa0478720 | AT1G47330.2 | 63.855 | 415 | 126 | 7 | 82 | 479 | 1 | 408 | 1.30e-178 | 509 |
| Msa0478720 | AT2G14520.2 | 55.809 | 439 | 156 | 4 | 1 | 427 | 1 | 413 | 2.01e-163 | 469 |
| Msa0478720 | AT2G14520.4 | 56.845 | 431 | 170 | 4 | 1 | 427 | 1 | 419 | 9.79e-163 | 468 |
| Msa0478720 | AT2G14520.1 | 56.845 | 431 | 170 | 4 | 1 | 427 | 1 | 419 | 9.79e-163 | 468 |
| Msa0478720 | AT4G33700.1 | 56.206 | 427 | 180 | 3 | 1 | 427 | 1 | 420 | 3.97e-159 | 458 |
| Msa0478720 | AT5G52790.1 | 49.324 | 444 | 179 | 3 | 2 | 441 | 3 | 404 | 1.51e-146 | 429 |
| Msa0478720 | AT5G52790.4 | 49.769 | 432 | 179 | 4 | 2 | 433 | 3 | 396 | 4.47e-144 | 419 |
| Msa0478720 | AT5G52790.3 | 49.279 | 416 | 173 | 4 | 2 | 417 | 3 | 380 | 3.50e-135 | 396 |
| Msa0478720 | AT5G52790.2 | 49.279 | 416 | 173 | 4 | 2 | 417 | 3 | 380 | 3.50e-135 | 396 |
| Msa0478720 | AT5G52790.5 | 48.694 | 421 | 170 | 3 | 2 | 418 | 3 | 381 | 1.74e-134 | 397 |
| Msa0478720 | AT4G14230.1 | 48.148 | 432 | 198 | 6 | 9 | 436 | 30 | 439 | 1.14e-131 | 391 |
| Msa0478720 | AT4G14240.1 | 48.843 | 432 | 193 | 7 | 9 | 436 | 31 | 438 | 3.13e-129 | 385 |
| Msa0478720 | AT4G33700.2 | 65.125 | 281 | 98 | 0 | 1 | 281 | 1 | 281 | 1.33e-128 | 375 |
| Msa0478720 | AT1G03270.1 | 48.506 | 435 | 188 | 10 | 9 | 431 | 29 | 439 | 4.88e-128 | 382 |
| Msa0478720 | AT4G14240.2 | 48.148 | 432 | 187 | 8 | 9 | 436 | 31 | 429 | 1.21e-123 | 370 |
| Msa0478720 | AT4G33700.3 | 53.198 | 344 | 154 | 3 | 84 | 427 | 1 | 337 | 2.06e-117 | 349 |
| Msa0478720 | AT2G14520.3 | 52.874 | 348 | 148 | 4 | 84 | 427 | 1 | 336 | 2.87e-116 | 346 |
| Msa0478720 | AT4G14240.3 | 46.927 | 358 | 163 | 6 | 82 | 436 | 1 | 334 | 3.53e-100 | 306 |
Find 130 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTCCAAAGATGAGAATT+AGG | 0.181579 | 3_3:+83597865 | None:intergenic |
| CTTAACAACTGGGAATATTT+TGG | 0.190462 | 3_3:+83598100 | None:intergenic |
| CCATTGTCATTATTGAATTC+AGG | 0.202132 | 3_3:+83596773 | None:intergenic |
| GCTCCGGGCATTGCTATTAA+TGG | 0.221210 | 3_3:-83598394 | Msa0478720:five_prime_UTR |
| AGAAGAATGGTTAGGAAATA+AGG | 0.236557 | 3_3:+83598319 | None:intergenic |
| GTTACCCTAATTCTCATCTT+TGG | 0.237922 | 3_3:-83597870 | Msa0478720:CDS |
| GTTCGCTCTCCTGCATAAAC+TGG | 0.247690 | 3_3:+83596736 | None:intergenic |
| GTTGCAAAAGTTTCCCTATA+TGG | 0.254420 | 3_3:-83594458 | Msa0478720:three_prime_UTR |
| AGCACACCTTACCTTGCTTA+TGG | 0.258974 | 3_3:+83597620 | None:intergenic |
| ACTCTTGGACTCATGTCTTT+AGG | 0.262493 | 3_3:-83598182 | Msa0478720:CDS |
| GAACACTATGCTTGCTAGTT+TGG | 0.271870 | 3_3:-83594413 | Msa0478720:three_prime_UTR |
| GGTATGCTTCGCTGGTCTTA+TGG | 0.276337 | 3_3:-83598213 | Msa0478720:CDS |
| AAGGGAAAATGCCTTTGATA+TGG | 0.302600 | 3_3:+83596912 | None:intergenic |
| AGGAGAGCGAACAAACATTA+TGG | 0.326640 | 3_3:-83596725 | Msa0478720:CDS |
| TTATGCTGCTGTCTTGATTT+CGG | 0.334551 | 3_3:-83597892 | Msa0478720:CDS |
| AGTTAACATGAATGCTTCTA+AGG | 0.340623 | 3_3:-83594699 | Msa0478720:CDS |
| CTTATGGCTGGTCTCACTCT+TGG | 0.347100 | 3_3:-83598197 | Msa0478720:CDS |
| TATTAACATAATGCCATATA+GGG | 0.347809 | 3_3:+83594445 | None:intergenic |
| AGATGCTGATTCTTAACAAC+TGG | 0.362278 | 3_3:+83598089 | None:intergenic |
| CCTTCTAATTTAGCAGTTCA+AGG | 0.367178 | 3_3:-83594647 | Msa0478720:CDS |
| ATATTAACATAATGCCATAT+AGG | 0.370278 | 3_3:+83594444 | None:intergenic |
| AAACATTATGGGACTTGTTC+TGG | 0.370883 | 3_3:-83596713 | Msa0478720:intron |
| AATACACAACAATTCTCTTC+AGG | 0.393381 | 3_3:+83594178 | None:intergenic |
| GCACACCTTACCTTGCTTAT+GGG | 0.393731 | 3_3:+83597621 | None:intergenic |
| TAAGAGATGGCTGCAGAGAT+AGG | 0.399958 | 3_3:-83598284 | Msa0478720:exon |
| AAAAGTGCTCCCTTGGATAA+AGG | 0.403057 | 3_3:-83595621 | Msa0478720:intron |
| CTTGAAGTTCTCATCAAATC+TGG | 0.405250 | 3_3:-83598149 | Msa0478720:CDS |
| CATTGTCATTATTGAATTCA+GGG | 0.415244 | 3_3:+83596774 | None:intergenic |
| CTCTCCAAAGATGAGAATTA+GGG | 0.416189 | 3_3:+83597866 | None:intergenic |
| TCTCTTTATGGTTGATTCAA+AGG | 0.420745 | 3_3:-83595947 | Msa0478720:CDS |
| CTCCGGGCATTGCTATTAAT+GGG | 0.422767 | 3_3:-83598393 | Msa0478720:five_prime_UTR |
| CAGGTGCTTGATCGGATGTT+GGG | 0.423011 | 3_3:-83597234 | Msa0478720:CDS |
| CCACCCAACGAAGTGGTTGT+TGG | 0.425913 | 3_3:-83595267 | Msa0478720:CDS |
| GAAAAGCTGCTCTGTTAAAG+AGG | 0.428710 | 3_3:-83597206 | Msa0478720:CDS |
| ACTTTCCGATATTTGATCAA+TGG | 0.429420 | 3_3:+83594568 | None:intergenic |
| TACCACCATTGATCAAATAT+CGG | 0.434482 | 3_3:-83594573 | Msa0478720:CDS |
| TGTAATCGAAGAGCTTCTTC+AGG | 0.437035 | 3_3:-83595226 | Msa0478720:intron |
| CTTGCTTATGGGATAAGCTA+TGG | 0.437062 | 3_3:+83597632 | None:intergenic |
| CTTGTTTAGTGAGCGTGTAT+TGG | 0.437371 | 3_3:-83594093 | Msa0478720:three_prime_UTR |
| TTAGAGTTGCATCCAAATCA+AGG | 0.438762 | 3_3:+83596893 | None:intergenic |
| CTGTACATATTGATAATCAT+AGG | 0.453758 | 3_3:-83598239 | Msa0478720:CDS |
| TCTACCGTTACTTCTGCAAC+GGG | 0.453830 | 3_3:-83594602 | Msa0478720:CDS |
| AAATGATTATGTTTATGCTC+CGG | 0.454649 | 3_3:-83598410 | Msa0478720:five_prime_UTR |
| GGTTGTTGGTGTTATTTCAA+TGG | 0.455509 | 3_3:-83595253 | Msa0478720:CDS |
| CCTTGAACTGCTAAATTAGA+AGG | 0.461877 | 3_3:+83594647 | None:intergenic |
| AATGATTATGTTTATGCTCC+GGG | 0.462274 | 3_3:-83598409 | Msa0478720:five_prime_UTR |
| TGCTTCGCTGGTCTTATGGC+TGG | 0.465349 | 3_3:-83598209 | Msa0478720:CDS |
| ATAGGATTGGTATGCTTCGC+TGG | 0.465631 | 3_3:-83598221 | Msa0478720:CDS |
| TTCAAGGGCACCGGCTATGA+TGG | 0.468114 | 3_3:+83596969 | None:intergenic |
| GATCGGAAATTCATTAGCTA+TGG | 0.472791 | 3_3:-83598048 | Msa0478720:CDS |
| GGAGAGCGAACAAACATTAT+GGG | 0.473611 | 3_3:-83596724 | Msa0478720:CDS |
| GTGAGAGGAGAAGAATGGTT+AGG | 0.475435 | 3_3:+83598311 | None:intergenic |
| CACTTCGTTGGGTGGAAACA+CGG | 0.476023 | 3_3:+83595275 | None:intergenic |
| TCAGGTGCTTGATCGGATGT+TGG | 0.476103 | 3_3:-83597235 | Msa0478720:intron |
| TTCTACCGTTACTTCTGCAA+CGG | 0.477137 | 3_3:-83594603 | Msa0478720:CDS |
| ACACCAACAACCACTTCGTT+GGG | 0.477670 | 3_3:+83595264 | None:intergenic |
| AAAGAATAACAGAGTAACAT+AGG | 0.480736 | 3_3:-83594513 | Msa0478720:three_prime_UTR |
| TTGTACACGATACGGATTGA+TGG | 0.481123 | 3_3:-83597706 | Msa0478720:CDS |
| CAGATTTGATGAGAACTTCA+AGG | 0.482557 | 3_3:+83598150 | None:intergenic |
| AGGGAAAATGCCTTTGATAT+GGG | 0.486803 | 3_3:+83596913 | None:intergenic |
| GATGCTGTGGAACTAAATTC+TGG | 0.488539 | 3_3:-83598262 | Msa0478720:CDS |
| TAAATCTCTACCTTTATCCA+AGG | 0.493315 | 3_3:+83595611 | None:intergenic |
| ACGGTAGAAATCGAATTAGT+TGG | 0.498913 | 3_3:+83594617 | None:intergenic |
| TTCAGTCAATTCAAGGGCAC+CGG | 0.499613 | 3_3:+83596960 | None:intergenic |
| AACACCAACAACCACTTCGT+TGG | 0.500800 | 3_3:+83595263 | None:intergenic |
| TTAATGGGTATATGATATGT+GGG | 0.500963 | 3_3:-83598378 | Msa0478720:five_prime_UTR |
| GGCTGCAACAGATTTGCATC+AGG | 0.502522 | 3_3:+83594668 | None:intergenic |
| TTGGGTGGAAACACGGGCAA+GGG | 0.503791 | 3_3:+83595282 | None:intergenic |
| CATATTGATAATCATAGGAT+TGG | 0.504612 | 3_3:-83598234 | Msa0478720:CDS |
| CTGAATTCAATAATGACAAT+GGG | 0.509825 | 3_3:-83596772 | Msa0478720:CDS |
| TTTAGTGAGCGTGTATTGGA+TGG | 0.509894 | 3_3:-83594089 | Msa0478720:three_prime_UTR |
| TGAGGAACAACTAGAGTTCA+AGG | 0.516832 | 3_3:-83595664 | Msa0478720:CDS |
| AGTAGAGTCCCAGTTTATGC+AGG | 0.520155 | 3_3:-83596745 | Msa0478720:CDS |
| TTCGCTCTCCTGCATAAACT+GGG | 0.527846 | 3_3:+83596737 | None:intergenic |
| CATGAATGCTTCTAAGGAGA+AGG | 0.530301 | 3_3:-83594693 | Msa0478720:CDS |
| TACATATGTAGGTACAGTGT+TGG | 0.530341 | 3_3:-83595439 | Msa0478720:intron |
| CAAGGACAGCTGTAGGAACA+AGG | 0.530759 | 3_3:-83595646 | Msa0478720:CDS |
| TGCCTTTGATATGGGAGTCA+TGG | 0.532757 | 3_3:+83596921 | None:intergenic |
| GTTGGGTGGAAACACGGGCA+AGG | 0.534220 | 3_3:+83595281 | None:intergenic |
| GAAATCAAGACAGCAGCATA+AGG | 0.534769 | 3_3:+83597894 | None:intergenic |
| AGGGAGCATTATCAAGGTCC+AGG | 0.534989 | 3_3:+83595301 | None:intergenic |
| TGTTGGTGTTATTTCAATGG+AGG | 0.536577 | 3_3:-83595250 | Msa0478720:CDS |
| CGGAAATTCATTAGCTATGG+AGG | 0.537674 | 3_3:-83598045 | Msa0478720:intron |
| CAAGCTGTTTGTACACGATA+CGG | 0.539871 | 3_3:-83597714 | Msa0478720:CDS |
| ATTAATGGGTATATGATATG+TGG | 0.543105 | 3_3:-83598379 | Msa0478720:five_prime_UTR |
| TGTTTATTTATCTTTAGTCA+CGG | 0.544430 | 3_3:-83594128 | Msa0478720:three_prime_UTR |
| TTGCTTATGGGATAAGCTAT+GGG | 0.544758 | 3_3:+83597633 | None:intergenic |
| CTTGATCGGATGTTGGGTAA+AGG | 0.545868 | 3_3:-83597228 | Msa0478720:CDS |
| ACTTCGTTGGGTGGAAACAC+GGG | 0.546891 | 3_3:+83595276 | None:intergenic |
| CCTGAATTCAATAATGACAA+TGG | 0.546972 | 3_3:-83596773 | Msa0478720:CDS |
| CGGGCAAGGGAGCATTATCA+AGG | 0.558047 | 3_3:+83595295 | None:intergenic |
| GTTTCTGTTGAAGAACAAAA+CGG | 0.562975 | 3_3:-83594491 | Msa0478720:three_prime_UTR |
| CCTAATTCTCATCTTTGGAG+AGG | 0.564389 | 3_3:-83597865 | Msa0478720:intron |
| AAATCTCTACCTTTATCCAA+GGG | 0.565221 | 3_3:+83595612 | None:intergenic |
| TAGAGTTGCATCCAAATCAA+GGG | 0.567063 | 3_3:+83596894 | None:intergenic |
| TTAGTGAGCGTGTATTGGAT+GGG | 0.567225 | 3_3:-83594088 | Msa0478720:three_prime_UTR |
| AGGTTGTTCATATTGCATCC+TGG | 0.569511 | 3_3:-83595319 | Msa0478720:CDS |
| TTAAAAGCAGGCGTTGCTGG+TGG | 0.574837 | 3_3:+83595354 | None:intergenic |
| CGTGTTTCCACCCAACGAAG+TGG | 0.574989 | 3_3:-83595274 | Msa0478720:CDS |
| GATATTTGATCAATGGTGGT+AGG | 0.578278 | 3_3:+83594575 | None:intergenic |
| TACCCATTAATAGCAATGCC+CGG | 0.580498 | 3_3:+83598391 | None:intergenic |
| CCAACAACCACTTCGTTGGG+TGG | 0.582637 | 3_3:+83595267 | None:intergenic |
| TGCCATGACTCCCATATCAA+AGG | 0.585212 | 3_3:-83596923 | Msa0478720:CDS |
| ACACGATACGGATTGATGGT+TGG | 0.586203 | 3_3:-83597702 | Msa0478720:CDS |
| TCTGCGTAGGCTGGGAAAGG+AGG | 0.586913 | 3_3:-83597015 | Msa0478720:intron |
| TATCGGAAAGTGAGTCACTC+AGG | 0.588739 | 3_3:-83594556 | Msa0478720:CDS |
| TTCCGATATTTGATCAATGG+TGG | 0.589597 | 3_3:+83594571 | None:intergenic |
| TATACTGAATGAATTTCAGA+AGG | 0.592402 | 3_3:-83595757 | Msa0478720:CDS |
| GATGAGACAACCATCATAGC+CGG | 0.601218 | 3_3:-83596979 | Msa0478720:CDS |
| TAGAGTTCAAGGACAGCTGT+AGG | 0.603806 | 3_3:-83595653 | Msa0478720:CDS |
| TCCTCTCACAGAGTAAGAGA+TGG | 0.611443 | 3_3:-83598297 | Msa0478720:exon |
| AAAAGCTGCTCTGTTAAAGA+GGG | 0.612879 | 3_3:-83597205 | Msa0478720:CDS |
| TGATATGTGGGGAAGAAAAG+CGG | 0.619385 | 3_3:-83598366 | Msa0478720:five_prime_UTR |
| TCACACGATACTGTGACTGC+TGG | 0.619416 | 3_3:-83595414 | Msa0478720:CDS |
| GCCATCTCTTACTCTGTGAG+AGG | 0.619484 | 3_3:+83598296 | None:intergenic |
| AAAAGAAGAACACGAACAAG+CGG | 0.620527 | 3_3:+83597666 | None:intergenic |
| GATGCTGATTCTTAACAACT+GGG | 0.626895 | 3_3:+83598090 | None:intergenic |
| TGAACCCGTTGCAGAAGTAA+CGG | 0.627253 | 3_3:+83594598 | None:intergenic |
| ACTCTGTGAGAGGAGAAGAA+TGG | 0.639067 | 3_3:+83598306 | None:intergenic |
| TATCGTGTACAAACAGCTTG+AGG | 0.643312 | 3_3:+83597717 | None:intergenic |
| CATAGCTTATCCCATAAGCA+AGG | 0.643663 | 3_3:-83597631 | Msa0478720:intron |
| ATCAAGACAGCAGCATAAGG+TGG | 0.647982 | 3_3:+83597897 | None:intergenic |
| ACTGCTGGTAGTAAGATTGA+CGG | 0.652137 | 3_3:-83595399 | Msa0478720:CDS |
| GCGGCATGGATGCGATGATG+AGG | 0.659853 | 3_3:+83598122 | None:intergenic |
| AAGGACAGCTGTAGGAACAA+GGG | 0.671823 | 3_3:-83595645 | Msa0478720:CDS |
| GCTGCAGAGATAGGATGCTG+TGG | 0.674517 | 3_3:-83598275 | Msa0478720:CDS |
| ATACTGAATGAATTTCAGAA+GGG | 0.676158 | 3_3:-83595756 | Msa0478720:CDS |
| TAATGGGTATATGATATGTG+GGG | 0.676952 | 3_3:-83598377 | Msa0478720:five_prime_UTR |
| TCATTCAGTATATCATACAG+AGG | 0.709636 | 3_3:+83595768 | None:intergenic |
| GCTGGTAGTAAGATTGACGG+CGG | 0.746959 | 3_3:-83595396 | Msa0478720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATGATAAAAGATAAAATA+AGG | - | chr3_3:83595009-83595028 | Msa0478720:intron | 15.0% |
| !!! | TAATGGACATTATTATTAAT+CGG | + | chr3_3:83595838-83595857 | None:intergenic | 15.0% |
| !!! | AAATTATGGTTTTGATATTT+TGG | - | chr3_3:83596334-83596353 | Msa0478720:intron | 15.0% |
| !!! | AATTATGGTTTTGATATTTT+GGG | - | chr3_3:83596335-83596354 | Msa0478720:intron | 15.0% |
| !! | AGAAATATCCAAAAAAATTA+AGG | - | chr3_3:83596789-83596808 | Msa0478720:intron | 15.0% |
| !! | TTATACAAACAAGACTATAA+TGG | + | chr3_3:83594925-83594944 | None:intergenic | 20.0% |
| !! | TTATGATAGAAGACTAATAA+TGG | + | chr3_3:83595855-83595874 | None:intergenic | 20.0% |
| !! | TGAGATAATTTATAACAAGA+GGG | + | chr3_3:83595975-83595994 | None:intergenic | 20.0% |
| !! | ATGAGATAATTTATAACAAG+AGG | + | chr3_3:83595976-83595995 | None:intergenic | 20.0% |
| !! | ACATTATTCACTATATATCA+CGG | + | chr3_3:83596091-83596110 | None:intergenic | 20.0% |
| !! | ACCAATTCATTGTAATTTAA+TGG | - | chr3_3:83596476-83596495 | Msa0478720:intron | 20.0% |
| !!! | AAGTTGTTGATATGATTTTA+TGG | - | chr3_3:83596634-83596653 | Msa0478720:intron | 20.0% |
| !!! | TTACTCTGTTATTCTTTTAA+TGG | + | chr3_3:83597961-83597980 | None:intergenic | 20.0% |
| !! | TATTAACATAATGCCATATA+GGG | + | chr3_3:83598035-83598054 | None:intergenic | 20.0% |
| !! | ATATTAACATAATGCCATAT+AGG | + | chr3_3:83598036-83598055 | None:intergenic | 20.0% |
| !!! | TGTGTTTTAGTTTCATAAAA+AGG | + | chr3_3:83598146-83598165 | None:intergenic | 20.0% |
| !! | TGTTTATTTATCTTTAGTCA+CGG | - | chr3_3:83598349-83598368 | Msa0478720:five_prime_UTR | 20.0% |
| !! | ATTAATGGGTATATGATATG+TGG | - | chr3_3:83594098-83594117 | Msa0478720:three_prime_UTR | 25.0% |
| !! | TTAATGGGTATATGATATGT+GGG | - | chr3_3:83594099-83594118 | Msa0478720:three_prime_UTR | 25.0% |
| !! | CTGTACATATTGATAATCAT+AGG | - | chr3_3:83594238-83594257 | Msa0478720:three_prime_UTR | 25.0% |
| !! | CATATTGATAATCATAGGAT+TGG | - | chr3_3:83594243-83594262 | Msa0478720:three_prime_UTR | 25.0% |
| ! | ACAATAGCATCAAGAAAAAT+AGG | + | chr3_3:83594559-83594578 | None:intergenic | 25.0% |
| !!! | CTATACTTTCTTGTTTTGTA+AGG | - | chr3_3:83594692-83594711 | Msa0478720:CDS | 25.0% |
| !! | AATAAGTTGAAAACAGCTTA+TGG | - | chr3_3:83595073-83595092 | Msa0478720:intron | 25.0% |
| ! | ATCATACTATAGTAATATGC+AGG | + | chr3_3:83595193-83595212 | None:intergenic | 25.0% |
| !! | ATGAAGATTGTGATATTTTC+AGG | - | chr3_3:83595224-83595243 | Msa0478720:intron | 25.0% |
| !!! | TTAATTTTGTTTTTCTGCGT+AGG | - | chr3_3:83595449-83595468 | Msa0478720:intron | 25.0% |
| ! | CATTGTCATTATTGAATTCA+GGG | + | chr3_3:83595706-83595725 | None:intergenic | 25.0% |
| ! | CTGAATTCAATAATGACAAT+GGG | - | chr3_3:83595705-83595724 | Msa0478720:CDS | 25.0% |
| ! | TATAGTGAATAATGTTTGTG+AGG | - | chr3_3:83596096-83596115 | Msa0478720:intron | 25.0% |
| ! | CATAAACAATAATGATAGTC+AGG | + | chr3_3:83596291-83596310 | None:intergenic | 25.0% |
| ! | GCCATTAAATTACAATGAAT+TGG | + | chr3_3:83596480-83596499 | None:intergenic | 25.0% |
| !! | TTTTTCACTTATATACATCC+AGG | - | chr3_3:83596500-83596519 | Msa0478720:intron | 25.0% |
| ! | ATATGAAAAAGAATTTACCG+AGG | + | chr3_3:83596594-83596613 | None:intergenic | 25.0% |
| ! | CATATGCATGAAATGAAAAT+TGG | - | chr3_3:83596609-83596628 | Msa0478720:intron | 25.0% |
| ! | TATACTGAATGAATTTCAGA+AGG | - | chr3_3:83596720-83596739 | Msa0478720:CDS | 25.0% |
| ! | ATACTGAATGAATTTCAGAA+GGG | - | chr3_3:83596721-83596740 | Msa0478720:CDS | 25.0% |
| ! | ATCCAAAAAAATTAAGGATG+AGG | - | chr3_3:83596795-83596814 | Msa0478720:intron | 25.0% |
| !!! | TTCCTCATCCTTAATTTTTT+TGG | + | chr3_3:83596800-83596819 | None:intergenic | 25.0% |
| !!! | TGTTTTTGAAATATCATCTG+TGG | - | chr3_3:83596922-83596941 | Msa0478720:CDS | 25.0% |
| !! | TTTTCTCTGTATCCTTAATA+GGG | - | chr3_3:83596945-83596964 | Msa0478720:CDS | 25.0% |
| !!! | TTTTGATGATTATCTCTTTG+AGG | - | chr3_3:83597005-83597024 | Msa0478720:CDS | 25.0% |
| !!! | GGTTTTAAACTTACTTGTTA+TGG | + | chr3_3:83597582-83597601 | None:intergenic | 25.0% |
| ! | AAAGTGATCTAATTAAACTG+GGG | + | chr3_3:83597630-83597649 | None:intergenic | 25.0% |
| ! | CAAAGTGATCTAATTAAACT+GGG | + | chr3_3:83597631-83597650 | None:intergenic | 25.0% |
| ! | ACAAAGTGATCTAATTAAAC+TGG | + | chr3_3:83597632-83597651 | None:intergenic | 25.0% |
| !! | AATTAGATCACTTTGTTGTA+TGG | - | chr3_3:83597636-83597655 | Msa0478720:CDS | 25.0% |
| ! | AAAGAATAACAGAGTAACAT+AGG | - | chr3_3:83597964-83597983 | Msa0478720:intron | 25.0% |
| !! | TAAATAAACAATTTTCTCGC+TGG | + | chr3_3:83598339-83598358 | None:intergenic | 25.0% |
| ! | TAATGGGTATATGATATGTG+GGG | - | chr3_3:83594100-83594119 | Msa0478720:three_prime_UTR | 30.0% |
| AGAAGAATGGTTAGGAAATA+AGG | + | chr3_3:83594161-83594180 | None:intergenic | 30.0% | |
| ! | CTTAACAACTGGGAATATTT+TGG | + | chr3_3:83594380-83594399 | None:intergenic | 30.0% |
| ! | TTGCTTTGTACTCTTTTGAT+CGG | - | chr3_3:83594412-83594431 | Msa0478720:three_prime_UTR | 30.0% |
| ! | CAAAACAAGAAAGTATAGCT+CGG | + | chr3_3:83594690-83594709 | None:intergenic | 30.0% |
| AAAAATGAATTCAGCGAACA+AGG | + | chr3_3:83594728-83594747 | None:intergenic | 30.0% | |
| !!! | GTTGTTTTGATAAGCTATCT+TGG | - | chr3_3:83595036-83595055 | Msa0478720:intron | 30.0% |
| ! | CACAATCTTCATATTTTCAC+AGG | + | chr3_3:83595216-83595235 | None:intergenic | 30.0% |
| ! | AAGACTTTTGTGGATTTTCA+TGG | - | chr3_3:83595303-83595322 | Msa0478720:CDS | 30.0% |
| ! | TTTGAAATGCATAGTTCAAG+AGG | - | chr3_3:83595343-83595362 | Msa0478720:CDS | 30.0% |
| AAACAAAAGAACTTGATCAC+AGG | + | chr3_3:83595392-83595411 | None:intergenic | 30.0% | |
| !! | GTGATCAAGTTCTTTTGTTT+CGG | - | chr3_3:83595392-83595411 | Msa0478720:CDS | 30.0% |
| ! | AGTCTTTTCAGTCAATTCAA+GGG | + | chr3_3:83595526-83595545 | None:intergenic | 30.0% |
| TATCGTCGTTTATTGTTAAC+AGG | - | chr3_3:83595652-83595671 | Msa0478720:CDS | 30.0% | |
| CCATTGTCATTATTGAATTC+AGG | + | chr3_3:83595707-83595726 | None:intergenic | 30.0% | |
| CCTGAATTCAATAATGACAA+TGG | - | chr3_3:83595704-83595723 | Msa0478720:CDS | 30.0% | |
| !! | TTGAGATTTTGAGTAGATGA+TGG | - | chr3_3:83595802-83595821 | Msa0478720:intron | 30.0% |
| CACTATTCTTGTAATCATGT+TGG | - | chr3_3:83595900-83595919 | Msa0478720:intron | 30.0% | |
| !!! | ATGGTTTTGATATTTTGGGA+AGG | - | chr3_3:83596339-83596358 | Msa0478720:intron | 30.0% |
| !!! | TGGTTTTGATATTTTGGGAA+GGG | - | chr3_3:83596340-83596359 | Msa0478720:intron | 30.0% |
| !! | AAGAAAATGGATTTTCTGCA+TGG | - | chr3_3:83596406-83596425 | Msa0478720:intron | 30.0% |
| ! | CCATAAAGAGATTTTTAACC+TGG | + | chr3_3:83596521-83596540 | None:intergenic | 30.0% |
| CCAGGTTAAAAATCTCTTTA+TGG | - | chr3_3:83596518-83596537 | Msa0478720:intron | 30.0% | |
| ! | TCTCTTTATGGTTGATTCAA+AGG | - | chr3_3:83596530-83596549 | Msa0478720:intron | 30.0% |
| !! | CTGATGATCATTTTTCTTAG+AGG | + | chr3_3:83596564-83596583 | None:intergenic | 30.0% |
| TGATCATCAGAAAAATTCCT+CGG | - | chr3_3:83596574-83596593 | Msa0478720:intron | 30.0% | |
| ATGAGGAAATCATGATTACT+GGG | + | chr3_3:83596663-83596682 | None:intergenic | 30.0% | |
| TCATTCAGTATATCATACAG+AGG | + | chr3_3:83596712-83596731 | None:intergenic | 30.0% | |
| AAATCTCTACCTTTATCCAA+GGG | + | chr3_3:83596868-83596887 | None:intergenic | 30.0% | |
| TAAATCTCTACCTTTATCCA+AGG | + | chr3_3:83596869-83596888 | None:intergenic | 30.0% | |
| AAAAACATAATGTCAACACG+AGG | + | chr3_3:83596909-83596928 | None:intergenic | 30.0% | |
| ! | GTTTTCTCTGTATCCTTAAT+AGG | - | chr3_3:83596944-83596963 | Msa0478720:CDS | 30.0% |
| ACTTTCATAAGACCCTATTA+AGG | + | chr3_3:83596960-83596979 | None:intergenic | 30.0% | |
| ACATACATGCATAACTATAG+TGG | + | chr3_3:83597291-83597310 | None:intergenic | 30.0% | |
| ACAATTGCAGCAATAACAAA+TGG | + | chr3_3:83597422-83597441 | None:intergenic | 30.0% | |
| ATCAAATTTGTGTGCATTTC+AGG | - | chr3_3:83597519-83597538 | Msa0478720:intron | 30.0% | |
| AAGTGATCTAATTAAACTGG+GGG | + | chr3_3:83597629-83597648 | None:intergenic | 30.0% | |
| GTATTCAGTTTAGTGTAGTT+TGG | - | chr3_3:83597679-83597698 | Msa0478720:CDS | 30.0% | |
| AGTTAACATGAATGCTTCTA+AGG | - | chr3_3:83597778-83597797 | Msa0478720:intron | 30.0% | |
| TACCACCATTGATCAAATAT+CGG | - | chr3_3:83597904-83597923 | Msa0478720:CDS | 30.0% | |
| ACTTTCCGATATTTGATCAA+TGG | + | chr3_3:83597912-83597931 | None:intergenic | 30.0% | |
| GTTTCTGTTGAAGAACAAAA+CGG | - | chr3_3:83597986-83598005 | Msa0478720:intron | 30.0% | |
| AATACACAACAATTCTCTTC+AGG | + | chr3_3:83598302-83598321 | None:intergenic | 30.0% | |
| CAGATTTGATGAGAACTTCA+AGG | + | chr3_3:83594330-83594349 | None:intergenic | 35.0% | |
| CTTGAAGTTCTCATCAAATC+TGG | - | chr3_3:83594328-83594347 | Msa0478720:three_prime_UTR | 35.0% | |
| !! | AACAACTGGGAATATTTTGG+CGG | + | chr3_3:83594377-83594396 | None:intergenic | 35.0% |
| !! | GATGCTGATTCTTAACAACT+GGG | + | chr3_3:83594390-83594409 | None:intergenic | 35.0% |
| !! | AGATGCTGATTCTTAACAAC+TGG | + | chr3_3:83594391-83594410 | None:intergenic | 35.0% |
| GATCGGAAATTCATTAGCTA+TGG | - | chr3_3:83594429-83594448 | Msa0478720:three_prime_UTR | 35.0% | |
| TTATGCTGCTGTCTTGATTT+CGG | - | chr3_3:83594585-83594604 | Msa0478720:CDS | 35.0% | |
| GTTACCCTAATTCTCATCTT+TGG | - | chr3_3:83594607-83594626 | Msa0478720:CDS | 35.0% | |
| CTCTCCAAAGATGAGAATTA+GGG | + | chr3_3:83594614-83594633 | None:intergenic | 35.0% | |
| AAAAGAAGAACACGAACAAG+CGG | + | chr3_3:83594814-83594833 | None:intergenic | 35.0% | |
| TTGCTTATGGGATAAGCTAT+GGG | + | chr3_3:83594847-83594866 | None:intergenic | 35.0% | |
| !!! | GATATTTTCAGGTGCTTGAT+CGG | - | chr3_3:83595235-83595254 | Msa0478720:CDS | 35.0% |
| AAAAGCTGCTCTGTTAAAGA+GGG | - | chr3_3:83595272-83595291 | Msa0478720:CDS | 35.0% | |
| ATGCATAGTTCAAGAGGAAT+TGG | - | chr3_3:83595349-83595368 | Msa0478720:CDS | 35.0% | |
| ! | CAGTCTTTTCAGTCAATTCA+AGG | + | chr3_3:83595527-83595546 | None:intergenic | 35.0% |
| AGGGAAAATGCCTTTGATAT+GGG | + | chr3_3:83595567-83595586 | None:intergenic | 35.0% | |
| AAGGGAAAATGCCTTTGATA+TGG | + | chr3_3:83595568-83595587 | None:intergenic | 35.0% | |
| !!! | AAAGGCATTTTCCCTTGATT+TGG | - | chr3_3:83595572-83595591 | Msa0478720:intron | 35.0% |
| TAGAGTTGCATCCAAATCAA+GGG | + | chr3_3:83595586-83595605 | None:intergenic | 35.0% | |
| TTAGAGTTGCATCCAAATCA+AGG | + | chr3_3:83595587-83595606 | None:intergenic | 35.0% | |
| TGGATGCAACTCTAAATTTG+TGG | - | chr3_3:83595592-83595611 | Msa0478720:intron | 35.0% | |
| GGATGCAACTCTAAATTTGT+GGG | - | chr3_3:83595593-83595612 | Msa0478720:intron | 35.0% | |
| AAACGACGATAGAAACATAG+TGG | + | chr3_3:83595643-83595662 | None:intergenic | 35.0% | |
| !! | ATTCTTTGTTTCTGCACTGA+AGG | - | chr3_3:83595676-83595695 | Msa0478720:CDS | 35.0% |
| !! | TTCTTTGTTTCTGCACTGAA+GGG | - | chr3_3:83595677-83595696 | Msa0478720:CDS | 35.0% |
| ! | AAACATTATGGGACTTGTTC+TGG | - | chr3_3:83595764-83595783 | Msa0478720:CDS | 35.0% |
| TGTTTGTGAGGTTTAATGCT+AGG | - | chr3_3:83596108-83596127 | Msa0478720:intron | 35.0% | |
| !! | GATCCTTGCAAAAAAGTACT+AGG | - | chr3_3:83596208-83596227 | Msa0478720:intron | 35.0% |
| ! | AATCCCATAAACCTTTTCCT+CGG | + | chr3_3:83596239-83596258 | None:intergenic | 35.0% |
| TATGGGATTCATGTTAAGCT+CGG | - | chr3_3:83596250-83596269 | Msa0478720:intron | 35.0% | |
| ! | AATTTTCTATTGCACCACAC+AGG | + | chr3_3:83596370-83596389 | None:intergenic | 35.0% |
| GAAAATTTGTATCGAGTGAC+TGG | - | chr3_3:83596383-83596402 | Msa0478720:intron | 35.0% | |
| TGCATGGTACATCATAAGAA+TGG | - | chr3_3:83596422-83596441 | Msa0478720:intron | 35.0% | |
| GATGAGGAAATCATGATTAC+TGG | + | chr3_3:83596664-83596683 | None:intergenic | 35.0% | |
| ! | TAGGGTCTTATGAAAGTTTG+TGG | - | chr3_3:83596963-83596982 | Msa0478720:CDS | 35.0% |
| AAGTTTGTGGTTGATCTACT+CGG | - | chr3_3:83596976-83596995 | Msa0478720:CDS | 35.0% | |
| TACATATGTAGGTACAGTGT+TGG | - | chr3_3:83597038-83597057 | Msa0478720:intron | 35.0% | |
| !! | GGTTGTTGGTGTTATTTCAA+TGG | - | chr3_3:83597224-83597243 | Msa0478720:CDS | 35.0% |
| !! | TGTTGGTGTTATTTCAATGG+AGG | - | chr3_3:83597227-83597246 | Msa0478720:CDS | 35.0% |
| CGAATTAGCATATAAGACAC+TGG | + | chr3_3:83597497-83597516 | None:intergenic | 35.0% | |
| AAATTTGTGTGCATTTCAGG+AGG | - | chr3_3:83597522-83597541 | Msa0478720:intron | 35.0% | |
| TCACAAGACAATTTAGAGAG+TGG | + | chr3_3:83597603-83597622 | None:intergenic | 35.0% | |
| CCTTGAACTGCTAAATTAGA+AGG | + | chr3_3:83597833-83597852 | None:intergenic | 35.0% | |
| CCTTCTAATTTAGCAGTTCA+AGG | - | chr3_3:83597830-83597849 | Msa0478720:intron | 35.0% | |
| ACGGTAGAAATCGAATTAGT+TGG | + | chr3_3:83597863-83597882 | None:intergenic | 35.0% | |
| GATATTTGATCAATGGTGGT+AGG | + | chr3_3:83597905-83597924 | None:intergenic | 35.0% | |
| TTCCGATATTTGATCAATGG+TGG | + | chr3_3:83597909-83597928 | None:intergenic | 35.0% | |
| GTTGCAAAAGTTTCCCTATA+TGG | - | chr3_3:83598019-83598038 | Msa0478720:intron | 35.0% | |
| TACCCATTAATAGCAATGCC+CGG | + | chr3_3:83594089-83594108 | None:intergenic | 40.0% | |
| TGATATGTGGGGAAGAAAAG+CGG | - | chr3_3:83594111-83594130 | Msa0478720:three_prime_UTR | 40.0% | |
| GATGCTGTGGAACTAAATTC+TGG | - | chr3_3:83594215-83594234 | Msa0478720:three_prime_UTR | 40.0% | |
| ACTCTTGGACTCATGTCTTT+AGG | - | chr3_3:83594295-83594314 | Msa0478720:three_prime_UTR | 40.0% | |
| CGGAAATTCATTAGCTATGG+AGG | - | chr3_3:83594432-83594451 | Msa0478720:three_prime_UTR | 40.0% | |
| GAAATCAAGACAGCAGCATA+AGG | + | chr3_3:83594586-83594605 | None:intergenic | 40.0% | |
| CCTCTCCAAAGATGAGAATT+AGG | + | chr3_3:83594615-83594634 | None:intergenic | 40.0% | |
| ! | CCTAATTCTCATCTTTGGAG+AGG | - | chr3_3:83594612-83594631 | Msa0478720:CDS | 40.0% |
| TATCGTGTACAAACAGCTTG+AGG | + | chr3_3:83594763-83594782 | None:intergenic | 40.0% | |
| CAAGCTGTTTGTACACGATA+CGG | - | chr3_3:83594763-83594782 | Msa0478720:intron | 40.0% | |
| ! | TTGTACACGATACGGATTGA+TGG | - | chr3_3:83594771-83594790 | Msa0478720:intron | 40.0% |
| CTTGCTTATGGGATAAGCTA+TGG | + | chr3_3:83594848-83594867 | None:intergenic | 40.0% | |
| CATAGCTTATCCCATAAGCA+AGG | - | chr3_3:83594846-83594865 | Msa0478720:intron | 40.0% | |
| CTTATCCCATAAGCAAGGTA+AGG | - | chr3_3:83594851-83594870 | Msa0478720:intron | 40.0% | |
| CACACAGACACACACATAAT+TGG | + | chr3_3:83594884-83594903 | None:intergenic | 40.0% | |
| ATTATGTGTGTGTCTGTGTG+TGG | - | chr3_3:83594884-83594903 | Msa0478720:intron | 40.0% | |
| GAAAAGCTGCTCTGTTAAAG+AGG | - | chr3_3:83595271-83595290 | Msa0478720:CDS | 40.0% | |
| ! | TGTGGATTTTCATGGCAATG+AGG | - | chr3_3:83595311-83595330 | Msa0478720:CDS | 40.0% |
| !!! | TTTTGTTTTTCTGCGTAGGC+TGG | - | chr3_3:83595453-83595472 | Msa0478720:intron | 40.0% |
| !! | TTTGTTTTTCTGCGTAGGCT+GGG | - | chr3_3:83595454-83595473 | Msa0478720:intron | 40.0% |
| AGGAGAGCGAACAAACATTA+TGG | - | chr3_3:83595752-83595771 | Msa0478720:CDS | 40.0% | |
| GGAGAGCGAACAAACATTAT+GGG | - | chr3_3:83595753-83595772 | Msa0478720:CDS | 40.0% | |
| GTGAGGTTTAATGCTAGGAT+TGG | - | chr3_3:83596113-83596132 | Msa0478720:intron | 40.0% | |
| !!! | AGGCCTAGTACTTTTTTGCA+AGG | + | chr3_3:83596214-83596233 | None:intergenic | 40.0% |
| !! | TTGCAAAAAAGTACTAGGCC+TGG | - | chr3_3:83596213-83596232 | Msa0478720:intron | 40.0% |
| AATTTCGAAGTCGCAGTACA+AGG | + | chr3_3:83596319-83596338 | None:intergenic | 40.0% | |
| GTACTGCGACTTCGAAATTA+TGG | - | chr3_3:83596320-83596339 | Msa0478720:intron | 40.0% | |
| ATCGAGTGACTGGAAGAAAA+TGG | - | chr3_3:83596393-83596412 | Msa0478720:intron | 40.0% | |
| TGAAACACTGCAGAATGATG+AGG | + | chr3_3:83596680-83596699 | None:intergenic | 40.0% | |
| TGAGGAACAACTAGAGTTCA+AGG | - | chr3_3:83596813-83596832 | Msa0478720:intron | 40.0% | |
| !! | AAAAGTGCTCCCTTGGATAA+AGG | - | chr3_3:83596856-83596875 | Msa0478720:intron | 40.0% |
| !! | TATCTCTTTGAGGTGACTGT+TGG | - | chr3_3:83597015-83597034 | Msa0478720:intron | 40.0% |
| GTGACTGTTGGTACATATGT+AGG | - | chr3_3:83597027-83597046 | Msa0478720:intron | 40.0% | |
| ACTGCTGGTAGTAAGATTGA+CGG | - | chr3_3:83597078-83597097 | Msa0478720:intron | 40.0% | |
| !!! | GGTGGACTTTTTTTCACTTG+TGG | + | chr3_3:83597108-83597127 | None:intergenic | 40.0% |
| !! | TTTTTAAAAGCAGGCGTTGC+TGG | + | chr3_3:83597129-83597148 | None:intergenic | 40.0% |
| !! | CAACGCCTGCTTTTAAAAAG+CGG | - | chr3_3:83597130-83597149 | Msa0478720:intron | 40.0% |
| !!! | CTATGCCGCTTTTTAAAAGC+AGG | + | chr3_3:83597138-83597157 | None:intergenic | 40.0% |
| !! | GCTTTTAAAAAGCGGCATAG+AGG | - | chr3_3:83597138-83597157 | Msa0478720:intron | 40.0% |
| AGGTTGTTCATATTGCATCC+TGG | - | chr3_3:83597158-83597177 | Msa0478720:intron | 40.0% | |
| TGTAATCGAAGAGCTTCTTC+AGG | - | chr3_3:83597251-83597270 | Msa0478720:intron | 40.0% | |
| AGCACATATGACAGGAACAT+TGG | + | chr3_3:83597456-83597475 | None:intergenic | 40.0% | |
| GAAACAACAGCACATATGAC+AGG | + | chr3_3:83597464-83597483 | None:intergenic | 40.0% | |
| GATCAAGTCATGACTAATGC+AGG | - | chr3_3:83597750-83597769 | Msa0478720:intron | 40.0% | |
| ! | CATGAATGCTTCTAAGGAGA+AGG | - | chr3_3:83597784-83597803 | Msa0478720:intron | 40.0% |
| TTCTACCGTTACTTCTGCAA+CGG | - | chr3_3:83597874-83597893 | Msa0478720:CDS | 40.0% | |
| ! | GAACACTATGCTTGCTAGTT+TGG | - | chr3_3:83598064-83598083 | Msa0478720:CDS | 40.0% |
| CTTGTTTAGTGAGCGTGTAT+TGG | - | chr3_3:83598384-83598403 | Msa0478720:five_prime_UTR | 40.0% | |
| TTTAGTGAGCGTGTATTGGA+TGG | - | chr3_3:83598388-83598407 | Msa0478720:five_prime_UTR | 40.0% | |
| TTAGTGAGCGTGTATTGGAT+GGG | - | chr3_3:83598389-83598408 | Msa0478720:five_prime_UTR | 40.0% | |
| ! | CTCCGGGCATTGCTATTAAT+GGG | - | chr3_3:83594084-83594103 | Msa0478720:three_prime_UTR | 45.0% |
| GTGAGAGGAGAAGAATGGTT+AGG | + | chr3_3:83594169-83594188 | None:intergenic | 45.0% | |
| ACTCTGTGAGAGGAGAAGAA+TGG | + | chr3_3:83594174-83594193 | None:intergenic | 45.0% | |
| TCCTCTCACAGAGTAAGAGA+TGG | - | chr3_3:83594180-83594199 | Msa0478720:three_prime_UTR | 45.0% | |
| TAAGAGATGGCTGCAGAGAT+AGG | - | chr3_3:83594193-83594212 | Msa0478720:three_prime_UTR | 45.0% | |
| ! | ATAGGATTGGTATGCTTCGC+TGG | - | chr3_3:83594256-83594275 | Msa0478720:three_prime_UTR | 45.0% |
| ATCAAGACAGCAGCATAAGG+TGG | + | chr3_3:83594583-83594602 | None:intergenic | 45.0% | |
| ! | ACACGATACGGATTGATGGT+TGG | - | chr3_3:83594775-83594794 | Msa0478720:intron | 45.0% |
| GCACACCTTACCTTGCTTAT+GGG | + | chr3_3:83594859-83594878 | None:intergenic | 45.0% | |
| AGCACACCTTACCTTGCTTA+TGG | + | chr3_3:83594860-83594879 | None:intergenic | 45.0% | |
| GCTATCTTGGACAGCTTATG+TGG | - | chr3_3:83595049-83595068 | Msa0478720:intron | 45.0% | |
| CTTGATCGGATGTTGGGTAA+AGG | - | chr3_3:83595249-83595268 | Msa0478720:CDS | 45.0% | |
| CTTTGTGCTCTCACTTAGCA+TGG | - | chr3_3:83595420-83595439 | Msa0478720:CDS | 45.0% | |
| GATGAGACAACCATCATAGC+CGG | - | chr3_3:83595498-83595517 | Msa0478720:intron | 45.0% | |
| ! | TTCAGTCAATTCAAGGGCAC+CGG | + | chr3_3:83595520-83595539 | None:intergenic | 45.0% |
| TGCCATGACTCCCATATCAA+AGG | - | chr3_3:83595554-83595573 | Msa0478720:intron | 45.0% | |
| TGCCTTTGATATGGGAGTCA+TGG | + | chr3_3:83595559-83595578 | None:intergenic | 45.0% | |
| AGTAGAGTCCCAGTTTATGC+AGG | - | chr3_3:83595732-83595751 | Msa0478720:CDS | 45.0% | |
| TTCGCTCTCCTGCATAAACT+GGG | + | chr3_3:83595743-83595762 | None:intergenic | 45.0% | |
| TGGCCGAGGAAAAGGTTTAT+GGG | - | chr3_3:83596233-83596252 | Msa0478720:intron | 45.0% | |
| TAGAGTTCAAGGACAGCTGT+AGG | - | chr3_3:83596824-83596843 | Msa0478720:intron | 45.0% | |
| AAGGACAGCTGTAGGAACAA+GGG | - | chr3_3:83596832-83596851 | Msa0478720:intron | 45.0% | |
| ACACCAACAACCACTTCGTT+GGG | + | chr3_3:83597216-83597235 | None:intergenic | 45.0% | |
| AACACCAACAACCACTTCGT+TGG | + | chr3_3:83597217-83597236 | None:intergenic | 45.0% | |
| TCTACCGTTACTTCTGCAAC+GGG | - | chr3_3:83597875-83597894 | Msa0478720:CDS | 45.0% | |
| TGAACCCGTTGCAGAAGTAA+CGG | + | chr3_3:83597882-83597901 | None:intergenic | 45.0% | |
| TATCGGAAAGTGAGTCACTC+AGG | - | chr3_3:83597921-83597940 | Msa0478720:CDS | 45.0% | |
| !!! | TTATTTATTTATGTAATTTT+AGG | - | chr3_3:83594653-83594672 | Msa0478720:CDS | 5.0% |
| ! | GCTCCGGGCATTGCTATTAA+TGG | - | chr3_3:83594083-83594102 | Msa0478720:three_prime_UTR | 50.0% |
| GCCATCTCTTACTCTGTGAG+AGG | + | chr3_3:83594184-83594203 | None:intergenic | 50.0% | |
| !! | GGTATGCTTCGCTGGTCTTA+TGG | - | chr3_3:83594264-83594283 | Msa0478720:three_prime_UTR | 50.0% |
| !! | CTTATGGCTGGTCTCACTCT+TGG | - | chr3_3:83594280-83594299 | Msa0478720:three_prime_UTR | 50.0% |
| !!! | CTGGGAATATTTTGGCGGCA+TGG | + | chr3_3:83594372-83594391 | None:intergenic | 50.0% |
| TCAGGTGCTTGATCGGATGT+TGG | - | chr3_3:83595242-83595261 | Msa0478720:CDS | 50.0% | |
| CAGGTGCTTGATCGGATGTT+GGG | - | chr3_3:83595243-83595262 | Msa0478720:CDS | 50.0% | |
| ! | GGCAGAGCTCAAGACTTTTG+TGG | - | chr3_3:83595293-83595312 | Msa0478720:CDS | 50.0% |
| ! | TTTTCTGCGTAGGCTGGGAA+AGG | - | chr3_3:83595459-83595478 | Msa0478720:intron | 50.0% |
| GTTCGCTCTCCTGCATAAAC+TGG | + | chr3_3:83595744-83595763 | None:intergenic | 50.0% | |
| ! | CATAAACCTTTTCCTCGGCC+AGG | + | chr3_3:83596234-83596253 | None:intergenic | 50.0% |
| CTGGCCGAGGAAAAGGTTTA+TGG | - | chr3_3:83596232-83596251 | Msa0478720:intron | 50.0% | |
| TTGGGAAGGGTTTACCTGTG+TGG | - | chr3_3:83596353-83596372 | Msa0478720:intron | 50.0% | |
| CAAGGACAGCTGTAGGAACA+AGG | - | chr3_3:83596831-83596850 | Msa0478720:intron | 50.0% | |
| !! | CAAGGGAAAAAGTGCTCCCT+TGG | - | chr3_3:83596849-83596868 | Msa0478720:intron | 50.0% |
| TCACACGATACTGTGACTGC+TGG | - | chr3_3:83597063-83597082 | Msa0478720:intron | 50.0% | |
| GCTGGTAGTAAGATTGACGG+CGG | - | chr3_3:83597081-83597100 | Msa0478720:intron | 50.0% | |
| ! | TTAAAAGCAGGCGTTGCTGG+TGG | + | chr3_3:83597126-83597145 | None:intergenic | 50.0% |
| !! | AGGGAGCATTATCAAGGTCC+AGG | + | chr3_3:83597179-83597198 | None:intergenic | 50.0% |
| ACTTCGTTGGGTGGAAACAC+GGG | + | chr3_3:83597204-83597223 | None:intergenic | 50.0% | |
| CACTTCGTTGGGTGGAAACA+CGG | + | chr3_3:83597205-83597224 | None:intergenic | 50.0% | |
| GGCGACGAAGTTTCTCATCT+TGG | - | chr3_3:83597657-83597676 | Msa0478720:CDS | 50.0% | |
| GGCTGCAACAGATTTGCATC+AGG | + | chr3_3:83597812-83597831 | None:intergenic | 50.0% | |
| GCTGCAGAGATAGGATGCTG+TGG | - | chr3_3:83594202-83594221 | Msa0478720:three_prime_UTR | 55.0% | |
| !! | TGCTTCGCTGGTCTTATGGC+TGG | - | chr3_3:83594268-83594287 | Msa0478720:three_prime_UTR | 55.0% |
| !! | TTCAAGGGCACCGGCTATGA+TGG | + | chr3_3:83595511-83595530 | None:intergenic | 55.0% |
| !! | AAAAGTACTAGGCCTGGCCG+AGG | - | chr3_3:83596219-83596238 | Msa0478720:intron | 55.0% |
| !! | CGGGCAAGGGAGCATTATCA+AGG | + | chr3_3:83597185-83597204 | None:intergenic | 55.0% |
| TTGGGTGGAAACACGGGCAA+GGG | + | chr3_3:83597198-83597217 | None:intergenic | 55.0% | |
| CGTGTTTCCACCCAACGAAG+TGG | - | chr3_3:83597203-83597222 | Msa0478720:CDS | 55.0% | |
| CCAACAACCACTTCGTTGGG+TGG | + | chr3_3:83597213-83597232 | None:intergenic | 55.0% | |
| CCACCCAACGAAGTGGTTGT+TGG | - | chr3_3:83597210-83597229 | Msa0478720:CDS | 55.0% | |
| GCGGCATGGATGCGATGATG+AGG | + | chr3_3:83594358-83594377 | None:intergenic | 60.0% | |
| TCTGCGTAGGCTGGGAAAGG+AGG | - | chr3_3:83595462-83595481 | Msa0478720:intron | 60.0% | |
| ACTAGGCCTGGCCGAGGAAA+AGG | - | chr3_3:83596225-83596244 | Msa0478720:intron | 60.0% | |
| GTTGGGTGGAAACACGGGCA+AGG | + | chr3_3:83597199-83597218 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 83594070 | 83598429 | 83594070 | ID=Msa0478720;Name=Msa0478720 |
| chr3_3 | mRNA | 83594070 | 83598429 | 83594070 | ID=Msa0478720-mRNA-1;Parent=Msa0478720;Name=Msa0478720-mRNA-1;_AED=0.13;_eAED=0.13;_QI=129|1|1|1|1|1|11|477|492 |
| chr3_3 | exon | 83594070 | 83594727 | 83594070 | ID=Msa0478720-mRNA-1:exon:23595;Parent=Msa0478720-mRNA-1 |
| chr3_3 | exon | 83594912 | 83594958 | 83594912 | ID=Msa0478720-mRNA-1:exon:23594;Parent=Msa0478720-mRNA-1 |
| chr3_3 | exon | 83595227 | 83595450 | 83595227 | ID=Msa0478720-mRNA-1:exon:23593;Parent=Msa0478720-mRNA-1 |
| chr3_3 | exon | 83595622 | 83595806 | 83595622 | ID=Msa0478720-mRNA-1:exon:23592;Parent=Msa0478720-mRNA-1 |
| chr3_3 | exon | 83595904 | 83595977 | 83595904 | ID=Msa0478720-mRNA-1:exon:23591;Parent=Msa0478720-mRNA-1 |
| chr3_3 | exon | 83596714 | 83596801 | 83596714 | ID=Msa0478720-mRNA-1:exon:23590;Parent=Msa0478720-mRNA-1 |
| chr3_3 | exon | 83596889 | 83597028 | 83596889 | ID=Msa0478720-mRNA-1:exon:23589;Parent=Msa0478720-mRNA-1 |
| chr3_3 | exon | 83597167 | 83597253 | 83597167 | ID=Msa0478720-mRNA-1:exon:23588;Parent=Msa0478720-mRNA-1 |
| chr3_3 | exon | 83597632 | 83597745 | 83597632 | ID=Msa0478720-mRNA-1:exon:23587;Parent=Msa0478720-mRNA-1 |
| chr3_3 | exon | 83597866 | 83597949 | 83597866 | ID=Msa0478720-mRNA-1:exon:23586;Parent=Msa0478720-mRNA-1 |
| chr3_3 | exon | 83598046 | 83598429 | 83598046 | ID=Msa0478720-mRNA-1:exon:23585;Parent=Msa0478720-mRNA-1 |
| chr3_3 | five_prime_UTR | 83598301 | 83598429 | 83598301 | ID=Msa0478720-mRNA-1:five_prime_utr;Parent=Msa0478720-mRNA-1 |
| chr3_3 | CDS | 83598046 | 83598300 | 83598046 | ID=Msa0478720-mRNA-1:cds;Parent=Msa0478720-mRNA-1 |
| chr3_3 | CDS | 83597866 | 83597949 | 83597866 | ID=Msa0478720-mRNA-1:cds;Parent=Msa0478720-mRNA-1 |
| chr3_3 | CDS | 83597632 | 83597745 | 83597632 | ID=Msa0478720-mRNA-1:cds;Parent=Msa0478720-mRNA-1 |
| chr3_3 | CDS | 83597167 | 83597253 | 83597167 | ID=Msa0478720-mRNA-1:cds;Parent=Msa0478720-mRNA-1 |
| chr3_3 | CDS | 83596889 | 83597028 | 83596889 | ID=Msa0478720-mRNA-1:cds;Parent=Msa0478720-mRNA-1 |
| chr3_3 | CDS | 83596714 | 83596801 | 83596714 | ID=Msa0478720-mRNA-1:cds;Parent=Msa0478720-mRNA-1 |
| chr3_3 | CDS | 83595904 | 83595977 | 83595904 | ID=Msa0478720-mRNA-1:cds;Parent=Msa0478720-mRNA-1 |
| chr3_3 | CDS | 83595622 | 83595806 | 83595622 | ID=Msa0478720-mRNA-1:cds;Parent=Msa0478720-mRNA-1 |
| chr3_3 | CDS | 83595227 | 83595450 | 83595227 | ID=Msa0478720-mRNA-1:cds;Parent=Msa0478720-mRNA-1 |
| chr3_3 | CDS | 83594912 | 83594958 | 83594912 | ID=Msa0478720-mRNA-1:cds;Parent=Msa0478720-mRNA-1 |
| chr3_3 | CDS | 83594547 | 83594727 | 83594547 | ID=Msa0478720-mRNA-1:cds;Parent=Msa0478720-mRNA-1 |
| chr3_3 | three_prime_UTR | 83594070 | 83594546 | 83594070 | ID=Msa0478720-mRNA-1:three_prime_utr;Parent=Msa0478720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
