AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0478900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0478900 MtrunA17_Chr3g0141761 97.736 530 12 0 1 530 1 530 0.0 1072
Msa0478900 MtrunA17_Chr4g0035171 68.849 504 146 4 34 530 29 528 0.0 723
Msa0478900 MtrunA17_Chr4g0074531 69.074 443 137 0 88 530 79 521 0.0 677
Msa0478900 MtrunA17_Chr7g0271011 64.389 483 164 1 56 530 54 536 0.0 669
Msa0478900 MtrunA17_Chr5g0447341 55.508 472 191 9 64 530 58 515 0.0 518
Msa0478900 MtrunA17_Chr3g0120471 55.411 462 182 7 85 530 58 511 1.43e-177 509
Msa0478900 MtrunA17_Chr0c30g0494071 49.370 476 130 7 88 530 18 415 4.89e-149 433
Msa0478900 MtrunA17_Chr3g0144741 63.497 326 111 4 29 350 17 338 9.07e-139 405
Msa0478900 MtrunA17_Chr3g0144731 75.159 157 39 0 374 530 5 161 1.05e-87 267
Msa0478900 MtrunA17_Chr4g0077071 42.500 80 45 1 363 441 2 81 8.15e-18 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0478900 AT1G27680.1 79.449 472 95 1 59 530 49 518 0.0 797
Msa0478900 AT4G39210.2 66.000 500 162 5 34 530 27 521 0.0 697
Msa0478900 AT4G39210.1 66.000 500 162 5 34 530 27 521 0.0 697
Msa0478900 AT2G21590.2 63.774 530 185 3 1 530 1 523 0.0 693
Msa0478900 AT2G21590.3 63.774 530 185 3 1 530 1 523 0.0 693
Msa0478900 AT2G21590.5 63.774 530 185 3 1 530 1 523 0.0 693
Msa0478900 AT2G21590.4 63.774 530 185 3 1 530 1 523 0.0 693
Msa0478900 AT2G21590.7 63.774 530 185 3 1 530 1 523 0.0 693
Msa0478900 AT2G21590.1 63.774 530 185 3 1 530 1 523 0.0 693
Msa0478900 AT2G21590.6 63.774 530 185 3 1 530 1 523 0.0 693
Msa0478900 AT5G19220.1 63.405 511 178 5 21 530 20 522 0.0 676
Msa0478900 AT5G48300.1 56.471 425 178 4 108 530 101 520 1.81e-179 515
Msa0478900 AT1G05610.1 40.498 442 239 9 95 530 53 476 1.31e-111 340
Msa0478900 AT1G05610.2 40.000 445 243 9 95 530 53 482 4.68e-110 336

Find 218 sgRNAs with CRISPR-Local

Find 472 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATCATCTTCAGAGTTTA+TGG 0.124215 3_3:-83703578 Msa0478900:three_prime_UTR
CTGCTGTTGGTGGCTTATTT+TGG 0.140213 3_3:+83706074 Msa0478910:CDS
AAGTGTAGCTTCAATCATTT+TGG 0.152446 3_3:-83710136 Msa0478900:CDS
TTGTCTCGCGCCTACAATTT+TGG 0.170350 3_3:-83709452 Msa0478900:CDS
GTCCTTCTTTGATGCAAATT+TGG 0.176590 3_3:-83707991 Msa0478900:CDS
GGATCATAGAATTGAAATTT+TGG 0.196615 3_3:+83707546 None:intergenic
CTACAATGAGGAAATGTTTC+AGG 0.203008 3_3:+83703275 Msa0478910:CDS
ACCTAAGAACACACTGTTTC+TGG 0.215084 3_3:+83710430 None:intergenic
TTTGGAAATGTCTCCACTTT+TGG 0.215779 3_3:-83709434 Msa0478900:CDS
TTATAACCATTGGCATAATA+AGG 0.219049 3_3:-83703099 Msa0478900:three_prime_UTR
TGTAGTCGAGCATCAGATTA+TGG 0.220724 3_3:-83708533 Msa0478900:intron
CTAGCTGAAGCCAGAAAATA+TGG 0.240698 3_3:+83703466 Msa0478910:CDS
TGCTGAATCCATATTTGATT+TGG 0.249136 3_3:+83710526 None:intergenic
GCTGGTTTGGAGGGTTTCTA+TGG 0.256257 3_3:+83705254 Msa0478910:CDS
ATGCTGTGAGGCAATTTATA+TGG 0.264007 3_3:-83709202 Msa0478900:CDS
GTGAACAACTATGAGGATTT+TGG 0.276697 3_3:+83703511 Msa0478910:CDS
CCACTTCTATTTGCAGAGTT+TGG 0.278435 3_3:+83705947 Msa0478910:CDS
AACTTCATATGAAAAGTTAA+TGG 0.278773 3_3:-83702826 Msa0478900:three_prime_UTR
GAGCATATATTGATACTTTC+TGG 0.283928 3_3:-83708880 Msa0478900:CDS
AGAGTCTGGTGTGGAGCTTC+AGG 0.286874 3_3:-83707276 Msa0478900:intron
GACATGATCGTACCTGATTT+TGG 0.288851 3_3:+83706958 None:intergenic
TAAACTCTCCAAATCAAATA+TGG 0.295746 3_3:-83710534 Msa0478900:exon
CAAAATCGATGGTGGGGATT+TGG 0.302605 3_3:-83705337 Msa0478900:three_prime_UTR
TCTTTACCGAATGAACTATA+TGG 0.310550 3_3:-83708851 Msa0478900:CDS
CATGTTGATACCACAGTTCT+TGG 0.312068 3_3:-83708322 Msa0478900:CDS
TTTATTGAATTGAAGAGAAA+TGG 0.322439 3_3:+83710553 None:intergenic
AATCTGCAAGTTAACTATAT+TGG 0.323780 3_3:+83706423 None:intergenic
TCTCCGTGTTTATTTATAGA+TGG 0.324046 3_3:-83702893 Msa0478900:three_prime_UTR
TGCTTTCAAATCTGATCCCT+TGG 0.326561 3_3:+83708460 None:intergenic
ATGAAGCACTTCAAATTATC+TGG 0.326683 3_3:-83706481 Msa0478900:exon
ACACCCATGGACGCAATATA+TGG 0.332102 3_3:+83708271 None:intergenic
GCACTTGGTTGAAGCTGGTT+TGG 0.337561 3_3:+83705241 Msa0478910:CDS
GAACACAACGTTCTCACTTC+AGG 0.338733 3_3:-83710326 Msa0478900:CDS
AACCAAGTGCTTTCCATCAA+TGG 0.339862 3_3:-83705228 Msa0478900:three_prime_UTR
TTAAACATACAGGTTCTGTT+AGG 0.354145 3_3:+83707967 None:intergenic
CTGAAACATTTCCTCATTGT+AGG 0.355723 3_3:-83703274 Msa0478900:three_prime_UTR
TGCATCAAAGAAGGACTCTA+TGG 0.358379 3_3:+83707998 None:intergenic
CCAATGGTTATAATGCATAT+TGG 0.359739 3_3:+83703109 Msa0478910:CDS
TTTCAAGAGGCTTCAAATCA+TGG 0.362074 3_3:+83703183 Msa0478910:CDS
ACTTCATATGAAAAGTTAAT+GGG 0.363149 3_3:-83702825 Msa0478900:three_prime_UTR
AGTGTTCAACATTCTATTGT+TGG 0.363187 3_3:-83707314 Msa0478900:CDS
TCGGTTCCAACATGGAAGTT+AGG 0.367099 3_3:-83705299 Msa0478900:three_prime_UTR
CAAAGACGACCCTACAATAA+TGG 0.367751 3_3:+83704880 Msa0478910:CDS
AGGCACGCAAGAAAGATATT+TGG 0.371065 3_3:-83705880 Msa0478900:three_prime_UTR
AAATATCTTTCTTGCGTGCC+TGG 0.382769 3_3:+83705882 Msa0478910:CDS
CTGTTGATGCAATTGCTCAT+AGG 0.388962 3_3:+83709533 None:intergenic
TTCAGATCACTCAGGAAATT+CGG 0.389534 3_3:+83704934 Msa0478910:CDS
ATTGACAAGAACGCAAGAAT+TGG 0.391143 3_3:-83706747 Msa0478900:CDS
ATGAAAAGTTAATGGGTTGC+CGG 0.393278 3_3:-83702818 Msa0478900:three_prime_UTR
GTAGTCGAGCATCAGATTAT+GGG 0.403067 3_3:-83708532 Msa0478900:intron
AATGACTACTGGGAAGATAT+TGG 0.405131 3_3:-83708023 Msa0478900:CDS
GCTTTCAAATCTGATCCCTT+GGG 0.406704 3_3:+83708461 None:intergenic
CTTGGTTGAAGCTGGTTTGG+AGG 0.408486 3_3:+83705244 Msa0478910:CDS
GAAGTGAAGAAAGGTGTCTT+TGG 0.409767 3_3:+83707525 None:intergenic
TAGTAGGTGGTAGGAATCTC+GGG 0.410488 3_3:+83707502 None:intergenic
TTCTCACGGTTGCTTCTTGA+GGG 0.412083 3_3:-83707342 Msa0478900:CDS
TTGTAGTATCCCTTCACAAC+AGG 0.414726 3_3:-83703610 Msa0478900:three_prime_UTR
CTGGAGAAGCTGGGAAGAAA+TGG 0.416925 3_3:-83709241 Msa0478900:CDS
TTGGTTGTTTGCAATGAAAT+CGG 0.418810 3_3:-83705318 Msa0478900:three_prime_UTR
ACTCAAACATCTGGAGAAGC+TGG 0.427143 3_3:-83709251 Msa0478900:CDS
TCTTACTTGAAATCCATTGA+TGG 0.429551 3_3:+83705215 Msa0478910:CDS
CTGGAACTATTAAAATTGAA+TGG 0.432987 3_3:-83708223 Msa0478900:CDS
CAAAATCCATATAGTTCATT+CGG 0.437135 3_3:+83708845 None:intergenic
TCACTCAGGAAATTCGGTTC+AGG 0.438277 3_3:+83704940 Msa0478910:CDS
ACCAGAAACAGTGTGTTCTT+AGG 0.439170 3_3:-83710431 Msa0478900:CDS
GGAGACATTTCCAAAATTGT+AGG 0.440007 3_3:+83709442 None:intergenic
GAATGATTTGGGTGATTGAA+TGG 0.440793 3_3:+83710367 None:intergenic
GGTTCTACATGCAATGACTT+TGG 0.444922 3_3:-83708202 Msa0478900:CDS
AAACCCCTTCAATACTCTCC+TGG 0.452132 3_3:+83703249 Msa0478910:CDS
TGTTGTGCTTAAACTTCCCT+TGG 0.453711 3_3:+83710400 None:intergenic
TGTTGCATTCTTCAGTATAA+CGG 0.453737 3_3:+83706524 None:intergenic
TGCTGTGAGGCAATTTATAT+GGG 0.454350 3_3:-83709201 Msa0478900:CDS
TATAACCATTGGCATAATAA+GGG 0.455451 3_3:-83703098 Msa0478900:three_prime_UTR
TTGGCTGCAACTCAAACATC+TGG 0.456746 3_3:-83709260 Msa0478900:CDS
TCACAGCATCAGCTGTTCCT+TGG 0.457682 3_3:+83709216 None:intergenic
TTTCTCACGGTTGCTTCTTG+AGG 0.458744 3_3:-83707343 Msa0478900:CDS
TTGGAGAAAATACCAAAATC+AGG 0.459198 3_3:-83706970 Msa0478900:intron
GAGTGCAGCTTATGCTGAAC+GGG 0.459434 3_3:+83703073 Msa0478910:CDS
GCAACTTCTTGCTGAAGGAA+TGG 0.461521 3_3:+83706096 Msa0478910:CDS
ATGAGCAGGCTATCTAATTC+AGG 0.462073 3_3:+83705848 Msa0478910:intron
TTGAGACTCTTGAGCAATCA+AGG 0.464834 3_3:-83706173 Msa0478900:three_prime_UTR
TGTTGATGCAATTGCTCATA+GGG 0.465603 3_3:+83709534 None:intergenic
TGTGCTTAAACTTCCCTTGG+TGG 0.466628 3_3:+83710403 None:intergenic
GACTTAACATAGCAAGAACT+TGG 0.466979 3_3:+83703205 Msa0478910:CDS
CACAAAACCCTCCCCAAAAG+TGG 0.468902 3_3:+83709421 None:intergenic
AACACAACGTTCTCACTTCA+GGG 0.469054 3_3:-83710325 Msa0478900:CDS
AGTCTGTAACACCCTCCAAT+TGG 0.472087 3_3:+83709566 None:intergenic
ATTTCCTCATTGTAGGATCC+AGG 0.475042 3_3:-83703267 Msa0478900:three_prime_UTR
TAAACATACAGGTTCTGTTA+GGG 0.476837 3_3:+83707968 None:intergenic
AAGTTAATGGGTTGCCGGCT+TGG 0.480661 3_3:-83702813 None:intergenic
ATGTTGATACCACAGTTCTT+GGG 0.481756 3_3:-83708321 Msa0478900:CDS
TTGGTTGAAGCTGGTTTGGA+GGG 0.482304 3_3:+83705245 Msa0478910:CDS
AGCTCCCAAGCCATTATTGT+AGG 0.482591 3_3:-83704890 Msa0478900:three_prime_UTR
CCCTCTTTGTAGAGTTATTG+CGG 0.485613 3_3:-83705994 Msa0478900:three_prime_UTR
TTAGTAGGTGGTAGGAATCT+CGG 0.485975 3_3:+83707501 None:intergenic
GTTTCGAACTGAGACCCTAC+TGG 0.486692 3_3:-83708242 Msa0478900:CDS
GGCCAAATTTGCATCAAAGA+AGG 0.488270 3_3:+83707989 None:intergenic
TTTCTACTTTAGTAGGTGGT+AGG 0.488998 3_3:+83707493 None:intergenic
CAAAGTGCGAGATAGAGAAA+TGG 0.490194 3_3:+83710644 None:intergenic
TTGATGAAAATTGACGAAAC+AGG 0.491996 3_3:-83708509 Msa0478900:CDS
AACAATATGTGGAGTGGGCA+AGG 0.492441 3_3:+83703542 Msa0478910:CDS
CGTGTCTTCCCATGGATGAC+AGG 0.492624 3_3:-83708676 Msa0478900:intron
CACAGTTTCGTGTCTTCCCA+TGG 0.494221 3_3:-83708684 Msa0478900:CDS
GATGAGTTTGTGAAAACAAG+AGG 0.495135 3_3:+83703051 Msa0478910:CDS
CGACCCTACAATAATGGCTT+GGG 0.495521 3_3:+83704886 Msa0478910:CDS
CCAATATGCATTATAACCAT+TGG 0.498863 3_3:-83703109 Msa0478900:three_prime_UTR
GAAGGATGTTCTGTGCATCT+TGG 0.500691 3_3:-83705919 Msa0478900:three_prime_UTR
CTTCACTAATCCTGTTGTGA+AGG 0.500716 3_3:+83703600 Msa0478910:CDS
CTGGTTTGGAGGGTTTCTAT+GGG 0.501531 3_3:+83705255 Msa0478910:CDS
GAGACTTTGTTCCTTTGAGA+TGG 0.501914 3_3:-83703153 Msa0478900:three_prime_UTR
GGAAAGGTGCCCGTTGGTGT+TGG 0.502348 3_3:-83706989 Msa0478900:CDS
GTCTGAAATTGCATCTCTGC+TGG 0.504662 3_3:-83707017 Msa0478900:CDS
TATTCATCAGCAAGTGGTGG+CGG 0.505162 3_3:+83706049 Msa0478910:CDS
ATACGATCACGTTTAGAGTC+TGG 0.512075 3_3:-83707290 Msa0478900:CDS
TTGGATATGCTCATTGAGCC+AGG 0.512473 3_3:-83705900 Msa0478900:three_prime_UTR
GCAATCAAGGTAGCTGTTGA+GGG 0.512833 3_3:-83706160 Msa0478900:three_prime_UTR
TTGAATTGAAGAGAAATGGA+AGG 0.512838 3_3:+83710557 None:intergenic
AGAACTTGGGCTTTCAGTGA+TGG 0.514025 3_3:+83703219 Msa0478910:CDS
ACAGAGTTGGATTAGTGAGA+TGG 0.514691 3_3:+83705190 Msa0478910:intron
GGAAAGCACTTGGTTGAAGC+TGG 0.514965 3_3:+83705236 Msa0478910:CDS
ACATCCATATATTGCGTCCA+TGG 0.515257 3_3:-83708275 Msa0478900:CDS
AGTGGTGGCGGGACTGCTGT+TGG 0.516917 3_3:+83706061 Msa0478910:CDS
AGGATCCAGGAGAGTATTGA+AGG 0.518122 3_3:-83703254 Msa0478900:three_prime_UTR
ATCTCTGCTGGCAGAAGGAA+AGG 0.518299 3_3:-83707005 Msa0478900:CDS
TTCACTAATCCTGTTGTGAA+GGG 0.520015 3_3:+83703601 Msa0478910:CDS
GGTGGCGGGACTGCTGTTGG+TGG 0.520882 3_3:+83706064 Msa0478910:CDS
AGCAATCAAGGTAGCTGTTG+AGG 0.523453 3_3:-83706161 Msa0478900:three_prime_UTR
TTGTGCCCACTGACAGCAGA+TGG 0.525142 3_3:+83708166 None:intergenic
GAGTTTGGTGAACAACTATG+AGG 0.527132 3_3:+83703504 Msa0478910:CDS
AATTTAGGATACCATGATGA+TGG 0.528488 3_3:-83707062 Msa0478900:intron
CAATGAAATCGGTTCCAACA+TGG 0.533691 3_3:-83705307 Msa0478900:three_prime_UTR
CTAAGCAAAATCAGTACTGA+AGG 0.534013 3_3:-83710467 Msa0478900:CDS
ACGACCCTACAATAATGGCT+TGG 0.535002 3_3:+83704885 Msa0478910:CDS
TTTATGTCTAAACTCTATAG+AGG 0.536282 3_3:+83706454 None:intergenic
ATAGATATACCTGTCATCCA+TGG 0.538901 3_3:+83708667 None:intergenic
TTCTTAAATTAGATAACTTG+AGG 0.539923 3_3:+83706382 None:intergenic
GTGGAGTGGGCAAGGAGTCA+AGG 0.541971 3_3:+83703550 Msa0478910:CDS
TGTCAGTGGGCACAATGTCC+AGG 0.542148 3_3:-83708158 Msa0478900:intron
CCAAACTCTGCAAATAGAAG+TGG 0.547342 3_3:-83705947 Msa0478900:three_prime_UTR
AGCCAGAAAATATGGGATCA+AGG 0.547736 3_3:+83703474 Msa0478910:CDS
ATTCATCAGCAAGTGGTGGC+GGG 0.550383 3_3:+83706050 Msa0478910:CDS
TGGAGTGGGCAAGGAGTCAA+GGG 0.553443 3_3:+83703551 Msa0478910:CDS
GTGGATGCAATTATTTCTCA+CGG 0.557035 3_3:-83707356 Msa0478900:CDS
TGAAGAAGCTGACAAAACTA+AGG 0.557319 3_3:-83706574 Msa0478900:CDS
CATCCATATATTGCGTCCAT+GGG 0.557589 3_3:-83708274 Msa0478900:CDS
TGGTGGGAAGAAACAATATG+TGG 0.558053 3_3:+83703531 Msa0478910:CDS
GAATTTCCTGAGTGATCTGA+AGG 0.558987 3_3:-83704932 Msa0478900:three_prime_UTR
AAGAATGCAACAATTCAAGA+TGG 0.559075 3_3:-83706513 Msa0478900:CDS
GGTAGCTGTTGAGGGGCTCT+CGG 0.559441 3_3:-83706152 Msa0478900:three_prime_UTR
CTCAAACATCTGGAGAAGCT+GGG 0.560522 3_3:-83709250 Msa0478900:CDS
GTATCACCTCGTAATTGTCT+CGG 0.560826 3_3:-83706126 Msa0478900:three_prime_UTR
AAAATCAGTACTGAAGGAGT+TGG 0.564723 3_3:-83710461 Msa0478900:CDS
AGTGTAGCAAAATCGATGGT+GGG 0.567085 3_3:-83705344 Msa0478900:three_prime_UTR
ATTGCATCTCTGCTGGCAGA+AGG 0.570677 3_3:-83707010 Msa0478900:CDS
ATCATCCCATCTGCTGTCAG+TGG 0.575158 3_3:-83708172 Msa0478900:CDS
GGGAGCCCTTATTATGCCAA+TGG 0.577595 3_3:+83703093 Msa0478910:CDS
ATTTCAACCACCAACCAAGC+CGG 0.578790 3_3:+83702799 None:intergenic
TTTGCTTAGATTGGTACTGA+AGG 0.582189 3_3:+83710481 None:intergenic
GAAGCTGACAAAACTAAGGA+AGG 0.583247 3_3:-83706570 Msa0478900:CDS
ATTTGGGTGATTGAATGGTA+AGG 0.586852 3_3:+83710372 None:intergenic
AATTGAAGAGAAATGGAAGG+AGG 0.589535 3_3:+83710560 None:intergenic
CTTTGTAAGCAACTCCACTC+AGG 0.590451 3_3:-83704862 Msa0478900:three_prime_UTR
GGAGTGCAGCTTATGCTGAA+CGG 0.590593 3_3:+83703072 Msa0478910:CDS
TCTAATCCTAACTTCCATGT+TGG 0.592105 3_3:+83705293 Msa0478910:CDS
ACTTGGGCTTTCAGTGATGG+TGG 0.593676 3_3:+83703222 Msa0478910:CDS
TTGCTTCTGATCCATCTCAA+AGG 0.594082 3_3:+83703142 Msa0478910:CDS
ATCCATTGATGGAAAGCACT+TGG 0.594235 3_3:+83705226 Msa0478910:CDS
GGGATCAGATTTGAAAGCAA+TGG 0.595427 3_3:-83708456 Msa0478900:intron
TAGCTGAAGCCAGAAAATAT+GGG 0.597075 3_3:+83703467 Msa0478910:CDS
GCTCCCAAGCCATTATTGTA+GGG 0.597541 3_3:-83704889 Msa0478900:three_prime_UTR
TTGATTACAGACATTTCAAG+AGG 0.597544 3_3:-83710193 Msa0478900:intron
GAAGAAACAATATGTGGAGT+GGG 0.601797 3_3:+83703537 Msa0478910:CDS
TAGATATACCTGTCATCCAT+GGG 0.604556 3_3:+83708668 None:intergenic
GCTGGGAAGAAATGGTTCCA+AGG 0.605702 3_3:-83709233 Msa0478900:CDS
GTAATCAGCACCCATCATCA+TGG 0.606381 3_3:+83707051 None:intergenic
TAGTGTAGCAAAATCGATGG+TGG 0.609838 3_3:-83705345 Msa0478900:three_prime_UTR
GGAAGAAACAATATGTGGAG+TGG 0.613160 3_3:+83703536 Msa0478910:CDS
ACAGTTTGCAGAAAAGCCCA+AGG 0.614014 3_3:-83708477 Msa0478900:CDS
CCGCAATAACTCTACAAAGA+GGG 0.614262 3_3:+83705994 Msa0478910:CDS
TCATCCCATCTGCTGTCAGT+GGG 0.615015 3_3:-83708171 Msa0478900:CDS
AATCTCGGGGAAGTGAAGAA+AGG 0.617323 3_3:+83707516 None:intergenic
GCAGAAGGAAAGGTGCCCGT+TGG 0.620430 3_3:-83706995 Msa0478900:CDS
GGATCCAGGAGAGTATTGAA+GGG 0.629960 3_3:-83703253 Msa0478900:three_prime_UTR
GCCGCAATAACTCTACAAAG+AGG 0.631578 3_3:+83705993 Msa0478910:CDS
GCAATATATTCATCAGCAAG+TGG 0.632112 3_3:+83706043 Msa0478910:CDS
GTGTAGTGTAGCAAAATCGA+TGG 0.632361 3_3:-83705348 Msa0478900:three_prime_UTR
CAAATAGAAGTGGCTTGTGA+AGG 0.632831 3_3:-83705937 Msa0478900:three_prime_UTR
TGTAGGCGCGAGACAAGTGA+CGG 0.633994 3_3:+83709459 None:intergenic
TCGAAACACGTAAACACCCA+TGG 0.634100 3_3:+83708258 None:intergenic
AAGATACATGTGATTTCACA+CGG 0.636947 3_3:+83706321 None:intergenic
TGCTACACTACACTCCTACC+CGG 0.641569 3_3:+83705358 Msa0478910:CDS
ATTTAGGATACCATGATGAT+GGG 0.646454 3_3:-83707061 Msa0478900:intron
TGATTACAGACATTTCAAGA+GGG 0.649339 3_3:-83710192 Msa0478900:intron
AGATGCCCTTCAGATCACTC+AGG 0.649849 3_3:+83704926 Msa0478910:CDS
GTGTAGCAAAATCGATGGTG+GGG 0.652565 3_3:-83705343 Msa0478900:three_prime_UTR
CAATCAAGGTAGCTGTTGAG+GGG 0.652896 3_3:-83706159 Msa0478900:three_prime_UTR
TTTCTGCAAACTGTATAATG+CGG 0.653342 3_3:+83708486 None:intergenic
GATCCAGGAGAGTATTGAAG+GGG 0.656104 3_3:-83703252 Msa0478900:three_prime_UTR
CTCTCCTGGATCCTACAATG+AGG 0.656930 3_3:+83703263 Msa0478910:CDS
TTCTTAGGTGAAACCACCAA+GGG 0.659061 3_3:-83710416 Msa0478900:CDS
ATCACGTTTAGAGTCTGGTG+TGG 0.660802 3_3:-83707285 Msa0478900:CDS
TCACTCATAGAAATTTGTAG+AGG 0.663631 3_3:-83710741 Msa0478900:five_prime_UTR
CAATGATTATCAAGACTCCA+CGG 0.666639 3_3:-83710300 Msa0478900:intron
ACTTAACATAGCAAGAACTT+GGG 0.667601 3_3:+83703206 Msa0478910:CDS
ACAAGACGCAACAGCCTGAG+TGG 0.667946 3_3:+83704848 Msa0478910:CDS
CAGTTTGCAGAAAAGCCCAA+GGG 0.674269 3_3:-83708476 Msa0478900:CDS
TTGAGATAACCCAAGAACTG+TGG 0.676641 3_3:+83708312 None:intergenic
ATATATTCATCAGCAAGTGG+TGG 0.678714 3_3:+83706046 Msa0478910:CDS
AATTTCCTGAGTGATCTGAA+GGG 0.681164 3_3:-83704931 Msa0478900:three_prime_UTR
TGTGCCCACTGACAGCAGAT+GGG 0.681391 3_3:+83708167 None:intergenic
AGTAGGTGGTAGGAATCTCG+GGG 0.683903 3_3:+83707503 None:intergenic
GTTCTTAGGTGAAACCACCA+AGG 0.689028 3_3:-83710417 Msa0478900:CDS
CTCTTTCCGAGACAATTACG+AGG 0.691562 3_3:+83706120 Msa0478910:CDS
ATGAGCAATTGCATCAACAG+TGG 0.694726 3_3:-83709530 Msa0478900:CDS
AAGGAACAGCTGATGCTGTG+AGG 0.699362 3_3:-83709214 Msa0478900:CDS
TTCAAACCATTGATCCGGGT+AGG 0.701214 3_3:-83705372 Msa0478900:intron
ATACCATCTATAAATAAACA+CGG 0.722712 3_3:+83702890 None:intergenic
TAGCAAAAGAGCCAAACCTG+CGG 0.729852 3_3:-83710079 Msa0478900:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAAAAAAAAAAAAAAA+AGG + chr3_3:83707911-83707930 None:intergenic 0.0%
!! TACTTTAATATATATTGAAA+TGG + chr3_3:83707793-83707812 None:intergenic 10.0%
!!! AAATAAAATTCATAATTTGT+TGG + chr3_3:83707995-83708014 None:intergenic 10.0%
!! TAAATTTAAAGAAAAAGTAA+TGG - chr3_3:83709847-83709866 Msa0478900:intron 10.0%
!! TATTTCAATTTAAAAACAGA+TGG - chr3_3:83705769-83705788 Msa0478900:intron 15.0%
!! TTATTGTAAGAATGATAAAT+TGG - chr3_3:83706162-83706181 Msa0478900:three_prime_UTR 15.0%
!! CAATTAGCTAAAAAAAATTA+CGG + chr3_3:83706418-83706437 None:intergenic 15.0%
!! AAATTATCAGAAATAAGAAA+AGG + chr3_3:83706755-83706774 None:intergenic 15.0%
!!! ACTGATGATAAATTTTTATT+TGG + chr3_3:83707267-83707286 None:intergenic 15.0%
!! ATATGTTAAAATAATATACG+AGG - chr3_3:83707943-83707962 Msa0478900:intron 15.0%
!! TATGTTAAAATAATATACGA+GGG - chr3_3:83707944-83707963 Msa0478900:intron 15.0%
!!! TTTTTATTTTTTTACAGAGT+TGG + chr3_3:83708379-83708398 None:intergenic 15.0%
!! AACTCTGTAAAAAAATAAAA+AGG - chr3_3:83708378-83708397 Msa0478900:intron 15.0%
!! ACTCTGTAAAAAAATAAAAA+GGG - chr3_3:83708379-83708398 Msa0478900:intron 15.0%
!! ATATATATTTATTGTCTTGT+TGG + chr3_3:83708509-83708528 None:intergenic 15.0%
!!! TTTTTTTTTTAAACTATCCA+AGG - chr3_3:83708807-83708826 Msa0478900:intron 15.0%
!!! TTTTTTTTTAAACTATCCAA+GGG - chr3_3:83708808-83708827 Msa0478900:intron 15.0%
!! AAATTTATCATTTATTAGTG+AGG - chr3_3:83709090-83709109 Msa0478900:intron 15.0%
!! ATTAGTAAAAACAATTTCAA+TGG - chr3_3:83709162-83709181 Msa0478900:intron 15.0%
!! TATTCTTTAAATGAAAGAAT+CGG - chr3_3:83709280-83709299 Msa0478900:intron 15.0%
!! AGCATTGTATATATTAATAA+TGG - chr3_3:83709880-83709899 Msa0478900:intron 15.0%
!! TATATATTAATAATGGCAAT+AGG - chr3_3:83709887-83709906 Msa0478900:intron 15.0%
!! TTGGATATTAAAAATAAAAG+GGG + chr3_3:83710125-83710144 None:intergenic 15.0%
!! GTTGGATATTAAAAATAAAA+GGG + chr3_3:83710126-83710145 None:intergenic 15.0%
!! TGTTGGATATTAAAAATAAA+AGG + chr3_3:83710127-83710146 None:intergenic 15.0%
!! TAAATTTATGATTGAGAAAA+TGG - chr3_3:83710221-83710240 Msa0478900:intron 15.0%
!!! TATTTATAGATGGTATTTTT+AGG - chr3_3:83710670-83710689 Msa0478900:five_prime_UTR 15.0%
!! TTTATTGAATTGAAGAGAAA+TGG + chr3_3:83703003-83703022 Msa0478910:CDS 20.0%
!!! TTTTTAGGAATGAATGATTT+GGG + chr3_3:83703200-83703219 Msa0478910:CDS 20.0%
!!! ATTTTTAGGAATGAATGATT+TGG + chr3_3:83703201-83703220 Msa0478910:CDS 20.0%
!! AAATCATTCATTCCTAAAAA+TGG - chr3_3:83703200-83703219 Msa0478900:three_prime_UTR 20.0%
!! AATTCTAATATCATCAAAAG+AGG - chr3_3:83703281-83703300 Msa0478900:three_prime_UTR 20.0%
!! ATTCTAATATCATCAAAAGA+GGG - chr3_3:83703282-83703301 Msa0478900:three_prime_UTR 20.0%
!!! TAGGTGAAATTTTATTTTGT+AGG - chr3_3:83703615-83703634 Msa0478900:three_prime_UTR 20.0%
!!! TACATAGTTTGTTACTATTT+TGG - chr3_3:83703948-83703967 Msa0478900:intron 20.0%
!! AAAACAAGAATAAATGTGAT+TGG - chr3_3:83704454-83704473 Msa0478900:intron 20.0%
!! TAATCTATGATTACAACTAA+TGG - chr3_3:83704756-83704775 Msa0478900:intron 20.0%
!!! TATTCGTTTTCTAAAACTAA+TGG - chr3_3:83704792-83704811 Msa0478900:intron 20.0%
!!! GGTATACATTTTTTACTTTT+CGG - chr3_3:83706298-83706317 Msa0478900:three_prime_UTR 20.0%
!! TTCTTAAATTAGATAACTTG+AGG + chr3_3:83707174-83707193 None:intergenic 20.0%
!!! TTTTTACAAAACAGAATGAT+GGG + chr3_3:83708129-83708148 None:intergenic 20.0%
!!! TTTTTTACAAAACAGAATGA+TGG + chr3_3:83708130-83708149 None:intergenic 20.0%
!! ACAGATATAATAGCAAATAT+TGG + chr3_3:83708776-83708795 None:intergenic 20.0%
!!! TTTTTTTTAAACTATCCAAG+GGG - chr3_3:83708809-83708828 Msa0478900:intron 20.0%
!! ATGAACCACAAAAAAAAATA+TGG + chr3_3:83709126-83709145 None:intergenic 20.0%
!! AAAATTGCACTTTATTACTA+TGG + chr3_3:83709318-83709337 None:intergenic 20.0%
!! TTGACAAAACAATTAACATT+AGG - chr3_3:83709440-83709459 Msa0478900:CDS 20.0%
!! TGACAAAACAATTAACATTA+GGG - chr3_3:83709441-83709460 Msa0478900:CDS 20.0%
!! AGAAAAAAAGGTTAAACTTA+AGG + chr3_3:83709576-83709595 None:intergenic 20.0%
!!! TCATGTAAGTTTTATTTTTC+TGG - chr3_3:83709610-83709629 Msa0478900:intron 20.0%
!! ATACTACAAAAATCACATTA+AGG + chr3_3:83709932-83709951 None:intergenic 20.0%
!! ATATTAAAAATAAAAGGGGT+TGG + chr3_3:83710121-83710140 None:intergenic 20.0%
!! ATACCATCTATAAATAAACA+CGG + chr3_3:83710666-83710685 None:intergenic 20.0%
!! AACTTCATATGAAAAGTTAA+TGG - chr3_3:83710727-83710746 Msa0478900:five_prime_UTR 20.0%
!! ACTTCATATGAAAAGTTAAT+GGG - chr3_3:83710728-83710747 Msa0478900:five_prime_UTR 20.0%
! TAAACTCTCCAAATCAAATA+TGG - chr3_3:83703019-83703038 Msa0478900:three_prime_UTR 25.0%
! TTCTAATATCATCAAAAGAG+GGG - chr3_3:83703283-83703302 Msa0478900:three_prime_UTR 25.0%
!!! AAAAGTAATATTTTTACCGC+AGG + chr3_3:83703493-83703512 Msa0478910:CDS 25.0%
! TGTTTAATGTTTAGTAGTAG+TGG - chr3_3:83703546-83703565 Msa0478900:three_prime_UTR 25.0%
!!! TTTATTTTGTAGGTTCCAAT+TGG - chr3_3:83703625-83703644 Msa0478900:intron 25.0%
! ACTATCAGCTTAATTAAGAA+TGG - chr3_3:83703658-83703677 Msa0478900:intron 25.0%
! AAGAATGGCTTATTATGTAT+AGG - chr3_3:83703673-83703692 Msa0478900:intron 25.0%
! AGAAATGTAGCAAGAATAAA+AGG - chr3_3:83704218-83704237 Msa0478900:intron 25.0%
!! ATTGATAATTGCATACACAT+AGG - chr3_3:83704268-83704287 Msa0478900:intron 25.0%
! CAAAATCCATATAGTTCATT+CGG + chr3_3:83704711-83704730 Msa0478910:intron 25.0%
!!! GTTTTAGAAAACGAATAACA+GGG + chr3_3:83704789-83704808 Msa0478910:intron 25.0%
!!! AGTTTTAGAAAACGAATAAC+AGG + chr3_3:83704790-83704809 Msa0478910:intron 25.0%
! TCATTCTATCTTTACATTGA+AGG - chr3_3:83704936-83704955 Msa0478900:three_prime_UTR 25.0%
! AAATGGATGTAAGAAATATC+AGG + chr3_3:83705143-83705162 Msa0478910:intron 25.0%
! AGCAATTATTCAGGAAAAAA+TGG + chr3_3:83705160-83705179 Msa0478910:intron 25.0%
! AAACTTACTAGCAATTATTC+AGG + chr3_3:83705169-83705188 Msa0478910:intron 25.0%
! ATTGCTAGTAAGTTTAATCT+AGG - chr3_3:83705174-83705193 Msa0478900:intron 25.0%
!!! CAATTTTAATAGTTCCAGTA+GGG + chr3_3:83705328-83705347 Msa0478910:CDS 25.0%
!!! TCAATTTTAATAGTTCCAGT+AGG + chr3_3:83705329-83705348 Msa0478910:CDS 25.0%
! CTGGAACTATTAAAATTGAA+TGG - chr3_3:83705330-83705349 Msa0478900:three_prime_UTR 25.0%
! CTTCAAAAATAATAGCAGTA+AGG + chr3_3:83705434-83705453 Msa0478910:intron 25.0%
!! ATTTTTGTTCAATGACTACT+GGG - chr3_3:83705520-83705539 Msa0478900:intron 25.0%
!! ATTTAGGTTCATATTTCTCA+AGG - chr3_3:83705630-83705649 Msa0478900:intron 25.0%
!!! TAAATTTTGAAAGTTTCTCC+AGG + chr3_3:83705835-83705854 Msa0478910:intron 25.0%
! GTACTAACACTATACAATTA+AGG + chr3_3:83705862-83705881 Msa0478910:CDS 25.0%
! ATGACAATCAGTAAAAACAT+GGG + chr3_3:83705884-83705903 Msa0478910:CDS 25.0%
! AATGACAATCAGTAAAAACA+TGG + chr3_3:83705885-83705904 Msa0478910:CDS 25.0%
!! AGAGTAAGTTTTTCTTCAAA+AGG - chr3_3:83705937-83705956 Msa0478900:three_prime_UTR 25.0%
!! GGATCATAGAATTGAAATTT+TGG + chr3_3:83706010-83706029 Msa0478910:CDS 25.0%
!! TTGCATTTTTCTACTTTAGT+AGG + chr3_3:83706070-83706089 Msa0478910:CDS 25.0%
! TACTAAAGTAGAAAAATGCA+AGG - chr3_3:83706069-83706088 Msa0478900:three_prime_UTR 25.0%
!! AAATTGGTTTCAATAGATTG+TGG - chr3_3:83706178-83706197 Msa0478900:three_prime_UTR 25.0%
!!! ACTTTTCTCTTTGTTGTATT+TGG - chr3_3:83706329-83706348 Msa0478900:three_prime_UTR 25.0%
!!! CTTTTCTCTTTGTTGTATTT+GGG - chr3_3:83706330-83706349 Msa0478900:three_prime_UTR 25.0%
!! ATTCCTTTTCATCTTCTATT+TGG - chr3_3:83706443-83706462 Msa0478900:three_prime_UTR 25.0%
! ATACCAAATAGAAGATGAAA+AGG + chr3_3:83706449-83706468 None:intergenic 25.0%
! TATCAGAAATAAGAAAAGGA+GGG + chr3_3:83706751-83706770 None:intergenic 25.0%
! TTATCAGAAATAAGAAAAGG+AGG + chr3_3:83706752-83706771 None:intergenic 25.0%
!!! TCATTCTTGATCGTTTTTTA+AGG - chr3_3:83706774-83706793 Msa0478900:intron 25.0%
! TAGAAAATGAAATAGACTGT+TGG + chr3_3:83706918-83706937 None:intergenic 25.0%
! TTTATGTCTAAACTCTATAG+AGG + chr3_3:83707102-83707121 None:intergenic 25.0%
! AATCTGCAAGTTAACTATAT+TGG + chr3_3:83707133-83707152 None:intergenic 25.0%
! TTGGTCAAATAAAAATGAGA+AGG + chr3_3:83708490-83708509 None:intergenic 25.0%
! AATTTCTGACGCAAATATTA+TGG + chr3_3:83709075-83709094 None:intergenic 25.0%
!!! TCCTTCCATATTTTTTTTTG+TGG - chr3_3:83709118-83709137 Msa0478900:intron 25.0%
! ACCACAAAAAAAAATATGGA+AGG + chr3_3:83709122-83709141 None:intergenic 25.0%
! CAGTAAAACAATATCAATTG+TGG + chr3_3:83709257-83709276 None:intergenic 25.0%
!!! CAATTTTTTGTCAACTTAGT+TGG - chr3_3:83709331-83709350 Msa0478900:intron 25.0%
! GACAAAACAATTAACATTAG+GGG - chr3_3:83709442-83709461 Msa0478900:CDS 25.0%
! AATGCAAGAGCTATATATTT+AGG - chr3_3:83709515-83709534 Msa0478900:CDS 25.0%
! AAAAGGTTAAACTTAAGGAT+TGG + chr3_3:83709571-83709590 None:intergenic 25.0%
! AACGTGAAAAGAAGAAAAAA+AGG + chr3_3:83709588-83709607 None:intergenic 25.0%
!!! TTTTTTTCTTCTTTTCACGT+TGG - chr3_3:83709587-83709606 Msa0478900:intron 25.0%
! TTGTGAACAAATGTAAGTAA+AGG + chr3_3:83709704-83709723 None:intergenic 25.0%
! TATTAATTTCTCTGTCTTGT+TGG + chr3_3:83710144-83710163 None:intergenic 25.0%
! TATGATTGAGAAAATGGAAA+TGG - chr3_3:83710227-83710246 Msa0478900:intron 25.0%
! TTATAACCATTGGCATAATA+AGG - chr3_3:83710454-83710473 Msa0478900:CDS 25.0%
! TATAACCATTGGCATAATAA+GGG - chr3_3:83710455-83710474 Msa0478900:CDS 25.0%
!! CTTCATTTTCTTCAACATAA+GGG + chr3_3:83710636-83710655 None:intergenic 25.0%
!! TCTTCATTTTCTTCAACATA+AGG + chr3_3:83710637-83710656 None:intergenic 25.0%
TTGAATTGAAGAGAAATGGA+AGG + chr3_3:83702999-83703018 Msa0478910:CDS 30.0%
TGCTGAATCCATATTTGATT+TGG + chr3_3:83703030-83703049 Msa0478910:CDS 30.0%
!!! AGTACTGATTTTGCTTAGAT+TGG + chr3_3:83703084-83703103 Msa0478910:CDS 30.0%
TTGATTACAGACATTTCAAG+AGG - chr3_3:83703360-83703379 Msa0478900:intron 30.0%
TGATTACAGACATTTCAAGA+GGG - chr3_3:83703361-83703380 Msa0478900:intron 30.0%
!! TGATTGAAGCTACACTTTTT+GGG + chr3_3:83703414-83703433 Msa0478910:intron 30.0%
! ATGATTGAAGCTACACTTTT+TGG + chr3_3:83703415-83703434 Msa0478910:intron 30.0%
! AAGTGTAGCTTCAATCATTT+TGG - chr3_3:83703417-83703436 Msa0478900:intron 30.0%
! AGTGTAGCTTCAATCATTTT+GGG - chr3_3:83703418-83703437 Msa0478900:intron 30.0%
! TTTTGCTAGTAAGAGGAAAA+AGG + chr3_3:83703462-83703481 Msa0478910:CDS 30.0%
!! TAATATTTTTACCGCAGGTT+TGG + chr3_3:83703488-83703507 Msa0478910:CDS 30.0%
!! TGCATAGTTTGTTGCTATTT+AGG - chr3_3:83703596-83703615 Msa0478900:three_prime_UTR 30.0%
ATAGTACAATCAGTTCCAAT+TGG + chr3_3:83703643-83703662 Msa0478910:intron 30.0%
TGCATGGATAAACTTATTTG+AGG + chr3_3:83703858-83703877 Msa0478910:intron 30.0%
TCAAATAAGTTTATCCATGC+AGG - chr3_3:83703857-83703876 Msa0478900:intron 30.0%
CAAATAAGTTTATCCATGCA+GGG - chr3_3:83703858-83703877 Msa0478900:intron 30.0%
TCTCTGAATTGTTACAATGT+TGG - chr3_3:83703892-83703911 Msa0478900:intron 30.0%
!!! CTATTTTGGTGAAATTTTGC+AGG - chr3_3:83703962-83703981 Msa0478900:intron 30.0%
AATTGCATACACATAGGTAT+TGG - chr3_3:83704274-83704293 Msa0478900:intron 30.0%
! GCAATTTATATGGGTTTTTG+AGG - chr3_3:83704361-83704380 Msa0478900:intron 30.0%
! AATGTTGCATATTTGCTGAA+AGG - chr3_3:83704395-83704414 Msa0478900:intron 30.0%
GAGCATATATTGATACTTTC+TGG - chr3_3:83704673-83704692 Msa0478900:intron 30.0%
TCTTTACCGAATGAACTATA+TGG - chr3_3:83704702-83704721 Msa0478900:intron 30.0%
! AACTAATGGTGATATTGACT+TGG - chr3_3:83704806-83704825 Msa0478900:intron 30.0%
!! ACTAATGGTGATATTGACTT+GGG - chr3_3:83704807-83704826 Msa0478900:intron 30.0%
TTGATGAAAATTGACGAAAC+AGG - chr3_3:83705044-83705063 Msa0478900:intron 30.0%
TTTCTGCAAACTGTATAATG+CGG + chr3_3:83705070-83705089 Msa0478910:intron 30.0%
TTATTAGAGATGCATTAGCT+AGG + chr3_3:83705205-83705224 Msa0478910:CDS 30.0%
TTGAAGTTCCAATTCTCTTT+AGG - chr3_3:83705448-83705467 Msa0478900:intron 30.0%
! CATTTTTGTTCAATGACTAC+TGG - chr3_3:83705519-83705538 Msa0478900:intron 30.0%
TAAACATACAGGTTCTGTTA+GGG + chr3_3:83705588-83705607 Msa0478910:intron 30.0%
TTAAACATACAGGTTCTGTT+AGG + chr3_3:83705589-83705608 Msa0478910:intron 30.0%
ACAGGATAGTTTAAACATAC+AGG + chr3_3:83705599-83705618 Msa0478910:intron 30.0%
CCTAAATACAAGTAAGTTAC+AGG + chr3_3:83705617-83705636 Msa0478910:intron 30.0%
CCTGTAACTTACTTGTATTT+AGG - chr3_3:83705614-83705633 Msa0478900:intron 30.0%
! AGGAAAAGTATGCAAATTTC+TGG - chr3_3:83705806-83705825 Msa0478900:intron 30.0%
! CATTTTTCTACTTTAGTAGG+TGG + chr3_3:83706067-83706086 Msa0478910:CDS 30.0%
AGTGTTCAACATTCTATTGT+TGG - chr3_3:83706239-83706258 Msa0478900:three_prime_UTR 30.0%
TTTGGTATATGCCTTCTTAA+TGG - chr3_3:83706461-83706480 Msa0478900:three_prime_UTR 30.0%
AATTGCAGAATCCATTAAGA+AGG + chr3_3:83706475-83706494 None:intergenic 30.0%
!! CTTAATGGATTCTGCAATTT+AGG - chr3_3:83706476-83706495 Msa0478900:three_prime_UTR 30.0%
! AATTTAGGATACCATGATGA+TGG - chr3_3:83706491-83706510 Msa0478900:exon 30.0%
! ATTTAGGATACCATGATGAT+GGG - chr3_3:83706492-83706511 Msa0478900:exon 30.0%
TTGGAGAAAATACCAAAATC+AGG - chr3_3:83706583-83706602 Msa0478900:intron 30.0%
! TAATCTAGAGTCCAGATATA+GGG + chr3_3:83706651-83706670 None:intergenic 30.0%
TCTAATCATCTTTACCTTTC+AGG - chr3_3:83706952-83706971 Msa0478900:intron 30.0%
CTAATCATCTTTACCTTTCA+GGG - chr3_3:83706953-83706972 Msa0478900:intron 30.0%
! CTAAGGAAGGATTTTACATT+AGG - chr3_3:83706996-83707015 Msa0478900:CDS 30.0%
TGTTGCATTCTTCAGTATAA+CGG + chr3_3:83707032-83707051 None:intergenic 30.0%
AAGAATGCAACAATTCAAGA+TGG - chr3_3:83707040-83707059 Msa0478900:CDS 30.0%
! ATGAAGCACTTCAAATTATC+TGG - chr3_3:83707072-83707091 Msa0478900:intron 30.0%
AAGATACATGTGATTTCACA+CGG + chr3_3:83707235-83707254 None:intergenic 30.0%
GGCATTTCATCTAAAAACTT+GGG + chr3_3:83707588-83707607 None:intergenic 30.0%
TGGCATTTCATCTAAAAACT+TGG + chr3_3:83707589-83707608 None:intergenic 30.0%
TTTGGTTAATGAAATGAGAG+CGG + chr3_3:83707759-83707778 None:intergenic 30.0%
GAAGAAAAACACAGTTAGAT+GGG + chr3_3:83708073-83708092 None:intergenic 30.0%
AGAAGAAAAACACAGTTAGA+TGG + chr3_3:83708074-83708093 None:intergenic 30.0%
TGGGATTTAATTCAGCTAAA+TGG + chr3_3:83708110-83708129 None:intergenic 30.0%
AAGAATTCAAACCATTGATC+CGG - chr3_3:83708176-83708195 Msa0478900:CDS 30.0%
TTGGTTGTTTGCAATGAAAT+CGG - chr3_3:83708235-83708254 Msa0478900:CDS 30.0%
TCTTACTTGAAATCCATTGA+TGG + chr3_3:83708341-83708360 None:intergenic 30.0%
!!! ACATTTAGTTTTTTTCCCCT+TGG + chr3_3:83708827-83708846 None:intergenic 30.0%
! ATGGTTGGTCAAATATTTCA+TGG + chr3_3:83709032-83709051 None:intergenic 30.0%
ATGAAATATTTGACCAACCA+TGG - chr3_3:83709031-83709050 Msa0478900:intron 30.0%
TATGAATTATGATCTCTCCA+TGG + chr3_3:83709051-83709070 None:intergenic 30.0%
TTTCAAAGACATATGAACAC+TGG + chr3_3:83709420-83709439 None:intergenic 30.0%
!! AAATGAAAGACTTGTTGAGA+GGG - chr3_3:83709779-83709798 Msa0478900:intron 30.0%
GAAATCATCTTCAGAGTTTA+TGG - chr3_3:83709975-83709994 Msa0478900:intron 30.0%
ACTTAACATAGCAAGAACTT+GGG + chr3_3:83710350-83710369 None:intergenic 30.0%
CCAATGGTTATAATGCATAT+TGG + chr3_3:83710447-83710466 None:intergenic 30.0%
CCAATATGCATTATAACCAT+TGG - chr3_3:83710444-83710463 Msa0478900:CDS 30.0%
TCTCCGTGTTTATTTATAGA+TGG - chr3_3:83710660-83710679 Msa0478900:five_prime_UTR 30.0%
AATTGAAGAGAAATGGAAGG+AGG + chr3_3:83702996-83703015 Msa0478910:CDS 35.0%
! TTTGCTTAGATTGGTACTGA+AGG + chr3_3:83703075-83703094 Msa0478910:CDS 35.0%
! CTAAGCAAAATCAGTACTGA+AGG - chr3_3:83703086-83703105 Msa0478900:three_prime_UTR 35.0%
! AAAATCAGTACTGAAGGAGT+TGG - chr3_3:83703092-83703111 Msa0478900:three_prime_UTR 35.0%
ATTTGGGTGATTGAATGGTA+AGG + chr3_3:83703184-83703203 Msa0478910:CDS 35.0%
! GAATGATTTGGGTGATTGAA+TGG + chr3_3:83703189-83703208 Msa0478910:CDS 35.0%
!! TTGTGTTCAGCTCCATTTTT+AGG + chr3_3:83703215-83703234 Msa0478910:CDS 35.0%
CAATGATTATCAAGACTCCA+CGG - chr3_3:83703253-83703272 Msa0478900:three_prime_UTR 35.0%
! GATATTAGAATTGAGTACCG+TGG + chr3_3:83703273-83703292 Msa0478910:CDS 35.0%
!!! GCTTTTGGAGTCTCAAAATA+GGG + chr3_3:83703388-83703407 Msa0478910:intron 35.0%
!!! TGCTTTTGGAGTCTCAAAAT+AGG + chr3_3:83703389-83703408 Msa0478910:intron 35.0%
GTAGTGGTTGCAATTGAATT+AGG - chr3_3:83703562-83703581 Msa0478900:three_prime_UTR 35.0%
AGCACTTGTGAACATTGTTT+AGG + chr3_3:83703820-83703839 Msa0478910:intron 35.0%
! GAAATTTTGCAGGTTCCAAT+TGG - chr3_3:83703972-83703991 Msa0478900:intron 35.0%
TGTTGATGCAATTGCTCATA+GGG + chr3_3:83704022-83704041 Msa0478910:intron 35.0%
GGAGACATTTCCAAAATTGT+AGG + chr3_3:83704114-83704133 Msa0478910:intron 35.0%
! TTTGGAAATGTCTCCACTTT+TGG - chr3_3:83704119-83704138 Msa0478900:intron 35.0%
!! TTGGAAATGTCTCCACTTTT+GGG - chr3_3:83704120-83704139 Msa0478900:intron 35.0%
GTAGCAAGAATAAAAGGTGA+TGG - chr3_3:83704224-83704243 Msa0478900:intron 35.0%
ATGCTGTGAGGCAATTTATA+TGG - chr3_3:83704351-83704370 Msa0478900:intron 35.0%
TGCTGTGAGGCAATTTATAT+GGG - chr3_3:83704352-83704371 Msa0478900:intron 35.0%
GTGATTTCTGCTTTGCTTAT+CGG - chr3_3:83704502-83704521 Msa0478900:intron 35.0%
TTGAGAATAGCTAATGTGTC+AGG - chr3_3:83704617-83704636 Msa0478900:intron 35.0%
! GAACTATATGGATTTTGTGC+AGG - chr3_3:83704714-83704733 Msa0478900:intron 35.0%
!! CTAATGGTGATATTGACTTG+GGG - chr3_3:83704808-83704827 Msa0478900:intron 35.0%
TAGATATACCTGTCATCCAT+GGG + chr3_3:83704888-83704907 Msa0478910:CDS 35.0%
ATAGATATACCTGTCATCCA+TGG + chr3_3:83704889-83704908 Msa0478910:CDS 35.0%
! AAGATAGAATGAAAGCATGC+AGG + chr3_3:83704928-83704947 Msa0478910:CDS 35.0%
ATGTTGATACCACAGTTCTT+GGG - chr3_3:83705232-83705251 Msa0478900:three_prime_UTR 35.0%
! TAAGGATATTCCTTTTCACC+TGG + chr3_3:83705416-83705435 Msa0478910:intron 35.0%
CCAGTAAACCTAAAGAGAAT+TGG + chr3_3:83705459-83705478 Msa0478910:intron 35.0%
! CCAATTCTCTTTAGGTTTAC+TGG - chr3_3:83705456-83705475 Msa0478900:intron 35.0%
!! CTGTTTCTATTTGCATTCTC+AGG - chr3_3:83705496-83705515 Msa0478900:intron 35.0%
AATGACTACTGGGAAGATAT+TGG - chr3_3:83705530-83705549 Msa0478900:intron 35.0%
GTCCTTCTTTGATGCAAATT+TGG - chr3_3:83705562-83705581 Msa0478900:intron 35.0%
CCATGCAAAACAGTTTGAAT+TGG + chr3_3:83705685-83705704 Msa0478910:intron 35.0%
! CCAATTCAAACTGTTTTGCA+TGG - chr3_3:83705682-83705701 Msa0478900:intron 35.0%
AGATGGAAATATTCAGCATG+AGG - chr3_3:83705786-83705805 Msa0478900:intron 35.0%
TTTCTACTTTAGTAGGTGGT+AGG + chr3_3:83706063-83706082 Msa0478910:CDS 35.0%
CAAATTCCCTTGTAAAAGCT+GGG + chr3_3:83706102-83706121 Msa0478910:CDS 35.0%
ACAAATTCCCTTGTAAAAGC+TGG + chr3_3:83706103-83706122 Msa0478910:CDS 35.0%
! GTGGATGCAATTATTTCTCA+CGG - chr3_3:83706197-83706216 Msa0478900:three_prime_UTR 35.0%
TACTGACCGATGACTAAAAA+CGG - chr3_3:83706390-83706409 Msa0478900:three_prime_UTR 35.0%
CATACAGAATTCCCTATATC+TGG - chr3_3:83706637-83706656 Msa0478900:intron 35.0%
! CTAATCTAGAGTCCAGATAT+AGG + chr3_3:83706652-83706671 None:intergenic 35.0%
GTCATGTCATCAACATTAGA+TGG - chr3_3:83706718-83706737 Msa0478900:intron 35.0%
ATTGACAAGAACGCAAGAAT+TGG - chr3_3:83706806-83706825 Msa0478900:intron 35.0%
AAAAACTGAAACTGCAGCTA+AGG - chr3_3:83706885-83706904 Msa0478900:intron 35.0%
TGAAGAAGCTGACAAAACTA+AGG - chr3_3:83706979-83706998 Msa0478900:CDS 35.0%
! GGAAGGATTTTACATTAGGT+CGG - chr3_3:83707000-83707019 Msa0478900:CDS 35.0%
! GAAGGATTTTACATTAGGTC+GGG - chr3_3:83707001-83707020 Msa0478900:CDS 35.0%
GACTCAAAAACATTGACAAG+TGG + chr3_3:83707329-83707348 None:intergenic 35.0%
!!! CTTGTCAATGTTTTTGAGTC+TGG - chr3_3:83707329-83707348 Msa0478900:CDS 35.0%
ATATATTCATCAGCAAGTGG+TGG + chr3_3:83707510-83707529 None:intergenic 35.0%
GCAATATATTCATCAGCAAG+TGG + chr3_3:83707513-83707532 None:intergenic 35.0%
GAAATGGAACAACTGTGATT+TGG + chr3_3:83707777-83707796 None:intergenic 35.0%
AAAACACAGTTAGATGGGTA+GGG + chr3_3:83708068-83708087 None:intergenic 35.0%
AAAAACACAGTTAGATGGGT+AGG + chr3_3:83708069-83708088 None:intergenic 35.0%
AGAATTCAAACCATTGATCC+GGG - chr3_3:83708177-83708196 Msa0478900:CDS 35.0%
TCTAATCCTAACTTCCATGT+TGG + chr3_3:83708263-83708282 None:intergenic 35.0%
ATCTGGCTACATTGTAACAT+AGG - chr3_3:83708447-83708466 Msa0478900:intron 35.0%
TCTGGCTACATTGTAACATA+GGG - chr3_3:83708448-83708467 Msa0478900:intron 35.0%
TTCAGATCACTCAGGAAATT+CGG + chr3_3:83708622-83708641 None:intergenic 35.0%
AATTTCCTGAGTGATCTGAA+GGG - chr3_3:83708622-83708641 Msa0478900:intron 35.0%
CATGACATTGACAACCTATT+AGG - chr3_3:83708889-83708908 Msa0478900:CDS 35.0%
ACATTGACAACCTATTAGGT+GGG - chr3_3:83708893-83708912 Msa0478900:CDS 35.0%
!!! ATTTTGGTTGGGAAATTTCG+TGG - chr3_3:83708924-83708943 Msa0478900:intron 35.0%
AATTATGATCTCTCCATGGT+TGG + chr3_3:83709047-83709066 None:intergenic 35.0%
!! GTCAACTTAGTTGGTAGAAA+TGG - chr3_3:83709340-83709359 Msa0478900:intron 35.0%
ACACCACACACATTATCAAA+CGG - chr3_3:83709370-83709389 Msa0478900:intron 35.0%
! AAGACATATGAACACTGGTT+TGG + chr3_3:83709415-83709434 None:intergenic 35.0%
! TTTAGGAGTGAGTGTTTTGT+AGG - chr3_3:83709532-83709551 Msa0478900:CDS 35.0%
TACAGCATGAGCAAAACTTA+AGG + chr3_3:83709674-83709693 None:intergenic 35.0%
!! GAAATGAAAGACTTGTTGAG+AGG - chr3_3:83709778-83709797 Msa0478900:intron 35.0%
TTCACTAATCCTGTTGTGAA+GGG + chr3_3:83709955-83709974 None:intergenic 35.0%
GAAGAAACAATATGTGGAGT+GGG + chr3_3:83710019-83710038 None:intergenic 35.0%
!! ACAACTATGAGGATTTTGGT+GGG + chr3_3:83710041-83710060 None:intergenic 35.0%
! AACAACTATGAGGATTTTGG+TGG + chr3_3:83710042-83710061 None:intergenic 35.0%
! GTGAACAACTATGAGGATTT+TGG + chr3_3:83710045-83710064 None:intergenic 35.0%
!!! GATCAAGGTGATTTTGAGTT+TGG + chr3_3:83710067-83710086 None:intergenic 35.0%
TAGCTGAAGCCAGAAAATAT+GGG + chr3_3:83710089-83710108 None:intergenic 35.0%
CTACAATGAGGAAATGTTTC+AGG + chr3_3:83710281-83710300 None:intergenic 35.0%
CTGAAACATTTCCTCATTGT+AGG - chr3_3:83710279-83710298 Msa0478900:intron 35.0%
GACTTAACATAGCAAGAACT+TGG + chr3_3:83710351-83710370 None:intergenic 35.0%
TTTCAAGAGGCTTCAAATCA+TGG + chr3_3:83710373-83710392 None:intergenic 35.0%
!! AGTCTCATCAACTTTTCAAG+AGG + chr3_3:83710386-83710405 None:intergenic 35.0%
GATGAGTTTGTGAAAACAAG+AGG + chr3_3:83710505-83710524 None:intergenic 35.0%
!! ATGAAAAGTTAATGGGTTGC+CGG - chr3_3:83710735-83710754 Msa0478900:five_prime_UTR 35.0%
CAAAGTGCGAGATAGAGAAA+TGG + chr3_3:83702912-83702931 None:intergenic 40.0%
ACCAGAAACAGTGTGTTCTT+AGG - chr3_3:83703122-83703141 Msa0478900:three_prime_UTR 40.0%
ACCTAAGAACACACTGTTTC+TGG + chr3_3:83703126-83703145 Msa0478910:CDS 40.0%
TTCTTAGGTGAAACCACCAA+GGG - chr3_3:83703137-83703156 Msa0478900:three_prime_UTR 40.0%
TGTTGTGCTTAAACTTCCCT+TGG + chr3_3:83703156-83703175 Msa0478910:CDS 40.0%
AACACAACGTTCTCACTTCA+GGG - chr3_3:83703228-83703247 Msa0478900:three_prime_UTR 40.0%
!!! ACACTTTTTGGGTCTGCTTT+TGG + chr3_3:83703403-83703422 Msa0478910:intron 40.0%
! GTAGCTTCAATCATTTTGGG+TGG - chr3_3:83703421-83703440 Msa0478900:intron 40.0%
!! TTGGCTCTTTTGCTAGTAAG+AGG + chr3_3:83703469-83703488 Msa0478910:CDS 40.0%
! ATTTTGCAGGTTCCAATTGG+AGG - chr3_3:83703975-83703994 Msa0478900:intron 40.0%
! TTTTGCAGGTTCCAATTGGA+GGG - chr3_3:83703976-83703995 Msa0478900:intron 40.0%
CTGTTGATGCAATTGCTCAT+AGG + chr3_3:83704023-83704042 Msa0478910:intron 40.0%
ATGAGCAATTGCATCAACAG+TGG - chr3_3:83704023-83704042 Msa0478900:intron 40.0%
!! TGGAAATGTCTCCACTTTTG+GGG - chr3_3:83704121-83704140 Msa0478900:intron 40.0%
! CATCCCACTTTATTTGCTAG+AGG - chr3_3:83704959-83704978 Msa0478900:intron 40.0%
CTGCCTCTAGCAAATAAAGT+GGG + chr3_3:83704965-83704984 Msa0478910:intron 40.0%
TCTGCCTCTAGCAAATAAAG+TGG + chr3_3:83704966-83704985 Msa0478910:intron 40.0%
TGTAGTCGAGCATCAGATTA+TGG - chr3_3:83705020-83705039 Msa0478900:intron 40.0%
GTAGTCGAGCATCAGATTAT+GGG - chr3_3:83705021-83705040 Msa0478900:intron 40.0%
GCTTTCAAATCTGATCCCTT+GGG + chr3_3:83705095-83705114 Msa0478910:intron 40.0%
TGCTTTCAAATCTGATCCCT+TGG + chr3_3:83705096-83705115 Msa0478910:intron 40.0%
GGGATCAGATTTGAAAGCAA+TGG - chr3_3:83705097-83705116 Msa0478900:intron 40.0%
CATGTTGATACCACAGTTCT+TGG - chr3_3:83705231-83705250 Msa0478900:three_prime_UTR 40.0%
TTGAGATAACCCAAGAACTG+TGG + chr3_3:83705244-83705263 Msa0478910:CDS 40.0%
ACATCCATATATTGCGTCCA+TGG - chr3_3:83705278-83705297 Msa0478900:three_prime_UTR 40.0%
CATCCATATATTGCGTCCAT+GGG - chr3_3:83705279-83705298 Msa0478900:three_prime_UTR 40.0%
GGTTCTACATGCAATGACTT+TGG - chr3_3:83705351-83705370 Msa0478900:three_prime_UTR 40.0%
TGCATCAAAGAAGGACTCTA+TGG + chr3_3:83705558-83705577 Msa0478910:intron 40.0%
GGCCAAATTTGCATCAAAGA+AGG + chr3_3:83705567-83705586 Msa0478910:intron 40.0%
GTCATGCTCTGTGACTATAA+TGG - chr3_3:83705652-83705671 Msa0478900:intron 40.0%
TTCAACTACAAGCAAGTCGT+AGG - chr3_3:83705712-83705731 Msa0478900:intron 40.0%
! TATGCAAATTTCTGGAGACC+TGG - chr3_3:83705814-83705833 Msa0478900:intron 40.0%
! TTACTTGTGCCATTACTTGC+AGG - chr3_3:83705982-83706001 Msa0478900:three_prime_UTR 40.0%
!!! ATTTTGGAGCCTGCAAGTAA+TGG + chr3_3:83705994-83706013 Msa0478910:CDS 40.0%
!! GAAGTGAAGAAAGGTGTCTT+TGG + chr3_3:83706031-83706050 Msa0478910:CDS 40.0%
TTAGTAGGTGGTAGGAATCT+CGG + chr3_3:83706055-83706074 Msa0478910:CDS 40.0%
! TATTGCACCCAGCTTTTACA+AGG - chr3_3:83706092-83706111 Msa0478900:three_prime_UTR 40.0%
! ATTGCACCCAGCTTTTACAA+GGG - chr3_3:83706093-83706112 Msa0478900:three_prime_UTR 40.0%
GCTGAATATGAGTGCTTCAT+TGG - chr3_3:83706123-83706142 Msa0478900:three_prime_UTR 40.0%
! ATACGATCACGTTTAGAGTC+TGG - chr3_3:83706263-83706282 Msa0478900:three_prime_UTR 40.0%
! AGTAGAAGAGCACAAACTAC+GGG + chr3_3:83706374-83706393 None:intergenic 40.0%
! CAGTAGAAGAGCACAAACTA+CGG + chr3_3:83706375-83706394 None:intergenic 40.0%
! GTATTTTCTCCAACACCAAC+GGG + chr3_3:83706576-83706595 None:intergenic 40.0%
! GGTATTTTCTCCAACACCAA+CGG + chr3_3:83706577-83706596 None:intergenic 40.0%
! GACATGATCGTACCTGATTT+TGG + chr3_3:83706598-83706617 None:intergenic 40.0%
TGATGACATGACATGCACAT+TGG + chr3_3:83706710-83706729 None:intergenic 40.0%
GAAGCTGACAAAACTAAGGA+AGG - chr3_3:83706983-83707002 Msa0478900:CDS 40.0%
TTGAGACTCTTGAGCAATCA+AGG - chr3_3:83707380-83707399 Msa0478900:intron 40.0%
GTATCACCTCGTAATTGTCT+CGG - chr3_3:83707427-83707446 Msa0478900:intron 40.0%
! TTTTGGCAACTTCTTGCTGA+AGG + chr3_3:83707465-83707484 None:intergenic 40.0%
CCGCAATAACTCTACAAAGA+GGG + chr3_3:83707562-83707581 None:intergenic 40.0%
CCCTCTTTGTAGAGTTATTG+CGG - chr3_3:83707559-83707578 Msa0478900:intron 40.0%
CCACTTCTATTTGCAGAGTT+TGG + chr3_3:83707609-83707628 None:intergenic 40.0%
CCAAACTCTGCAAATAGAAG+TGG - chr3_3:83707606-83707625 Msa0478900:intron 40.0%
! CAAATAGAAGTGGCTTGTGA+AGG - chr3_3:83707616-83707635 Msa0478900:intron 40.0%
AAATATCTTTCTTGCGTGCC+TGG + chr3_3:83707674-83707693 None:intergenic 40.0%
AGGCACGCAAGAAAGATATT+TGG - chr3_3:83707673-83707692 Msa0478900:intron 40.0%
ATGAGCAGGCTATCTAATTC+AGG + chr3_3:83707708-83707727 None:intergenic 40.0%
TGAATTAGATAGCCTGCTCA+TGG - chr3_3:83707707-83707726 Msa0478900:intron 40.0%
GAATTAGATAGCCTGCTCAT+GGG - chr3_3:83707708-83707727 Msa0478900:intron 40.0%
! AATGAGAGCGGATTCTGATT+TGG + chr3_3:83707747-83707766 None:intergenic 40.0%
GTGTAGTGTAGCAAAATCGA+TGG - chr3_3:83708205-83708224 Msa0478900:CDS 40.0%
TAGTGTAGCAAAATCGATGG+TGG - chr3_3:83708208-83708227 Msa0478900:CDS 40.0%
AGTGTAGCAAAATCGATGGT+GGG - chr3_3:83708209-83708228 Msa0478900:CDS 40.0%
! CAATGAAATCGGTTCCAACA+TGG - chr3_3:83708246-83708265 Msa0478900:CDS 40.0%
AACCAAGTGCTTTCCATCAA+TGG - chr3_3:83708325-83708344 Msa0478900:CDS 40.0%
!! ATCCATTGATGGAAAGCACT+TGG + chr3_3:83708330-83708349 None:intergenic 40.0%
!! ACAGAGTTGGATTAGTGAGA+TGG + chr3_3:83708366-83708385 None:intergenic 40.0%
CTTCACTACCATCTCTTATC+TGG - chr3_3:83708430-83708449 Msa0478900:intron 40.0%
CAATGTAGCCAGATAAGAGA+TGG + chr3_3:83708441-83708460 None:intergenic 40.0%
CTGGCTACATTGTAACATAG+GGG - chr3_3:83708449-83708468 Msa0478900:intron 40.0%
GAATTTCCTGAGTGATCTGA+AGG - chr3_3:83708621-83708640 Msa0478900:intron 40.0%
CAAAGACGACCCTACAATAA+TGG + chr3_3:83708676-83708695 None:intergenic 40.0%
GACATTGACAACCTATTAGG+TGG - chr3_3:83708892-83708911 Msa0478900:CDS 40.0%
CATTGACAACCTATTAGGTG+GGG - chr3_3:83708894-83708913 Msa0478900:CDS 40.0%
ACCACATGTAAGTAGTTGTG+AGG - chr3_3:83709005-83709024 Msa0478900:intron 40.0%
ACCTCACAACTACTTACATG+TGG + chr3_3:83709009-83709028 None:intergenic 40.0%
!! ATGCCGTTTGATAATGTGTG+TGG + chr3_3:83709376-83709395 None:intergenic 40.0%
!! ACTGGTTTGGAGTTCAAACT+CGG + chr3_3:83709402-83709421 None:intergenic 40.0%
TTGTAGTATCCCTTCACAAC+AGG - chr3_3:83709943-83709962 Msa0478900:intron 40.0%
CTTCACTAATCCTGTTGTGA+AGG + chr3_3:83709956-83709975 None:intergenic 40.0%
GGAAGAAACAATATGTGGAG+TGG + chr3_3:83710020-83710039 None:intergenic 40.0%
TGGTGGGAAGAAACAATATG+TGG + chr3_3:83710025-83710044 None:intergenic 40.0%
! GAGTTTGGTGAACAACTATG+AGG + chr3_3:83710052-83710071 None:intergenic 40.0%
! CACCTTGATCCCATATTTTC+TGG - chr3_3:83710077-83710096 Msa0478900:intron 40.0%
AGCCAGAAAATATGGGATCA+AGG + chr3_3:83710082-83710101 None:intergenic 40.0%
CTAGCTGAAGCCAGAAAATA+TGG + chr3_3:83710090-83710109 None:intergenic 40.0%
ATTTCCTCATTGTAGGATCC+AGG - chr3_3:83710286-83710305 Msa0478900:intron 40.0%
! GAGACTTTGTTCCTTTGAGA+TGG - chr3_3:83710400-83710419 Msa0478900:CDS 40.0%
TTGCTTCTGATCCATCTCAA+AGG + chr3_3:83710414-83710433 None:intergenic 40.0%
GTTCTTAGGTGAAACCACCA+AGG - chr3_3:83703136-83703155 Msa0478900:three_prime_UTR 45.0%
TGTGCTTAAACTTCCCTTGG+TGG + chr3_3:83703153-83703172 Msa0478910:CDS 45.0%
GAACACAACGTTCTCACTTC+AGG - chr3_3:83703227-83703246 Msa0478900:three_prime_UTR 45.0%
!! GCTTCAATCATTTTGGGTGG+TGG - chr3_3:83703424-83703443 Msa0478900:intron 45.0%
TAGCAAAAGAGCCAAACCTG+CGG - chr3_3:83703474-83703493 Msa0478900:three_prime_UTR 45.0%
GAAAAAGACATGACCCTGCA+TGG + chr3_3:83703874-83703893 Msa0478910:intron 45.0%
AGTCTGTAACACCCTCCAAT+TGG + chr3_3:83703990-83704009 Msa0478910:intron 45.0%
! TTGTCTCGCGCCTACAATTT+TGG - chr3_3:83704101-83704120 Msa0478900:intron 45.0%
!! AAATGTCTCCACTTTTGGGG+AGG - chr3_3:83704124-83704143 Msa0478900:intron 45.0%
!! AATGTCTCCACTTTTGGGGA+GGG - chr3_3:83704125-83704144 Msa0478900:intron 45.0%
TTGGCTGCAACTCAAACATC+TGG - chr3_3:83704293-83704312 Msa0478900:intron 45.0%
ACTCAAACATCTGGAGAAGC+TGG - chr3_3:83704302-83704321 Msa0478900:intron 45.0%
CTCAAACATCTGGAGAAGCT+GGG - chr3_3:83704303-83704322 Msa0478900:intron 45.0%
ATGTGTCAGGATTGTCTCAC+AGG - chr3_3:83704630-83704649 Msa0478900:intron 45.0%
ACAGTTTGCAGAAAAGCCCA+AGG - chr3_3:83705076-83705095 Msa0478900:intron 45.0%
CAGTTTGCAGAAAAGCCCAA+GGG - chr3_3:83705077-83705096 Msa0478900:intron 45.0%
ACACCCATGGACGCAATATA+TGG + chr3_3:83705285-83705304 Msa0478910:CDS 45.0%
TCGAAACACGTAAACACCCA+TGG + chr3_3:83705298-83705317 Msa0478910:CDS 45.0%
AATCTCGGGGAAGTGAAGAA+AGG + chr3_3:83706040-83706059 Msa0478910:CDS 45.0%
TAGTAGGTGGTAGGAATCTC+GGG + chr3_3:83706054-83706073 Msa0478910:CDS 45.0%
TTTCTCACGGTTGCTTCTTG+AGG - chr3_3:83706210-83706229 Msa0478900:three_prime_UTR 45.0%
TTCTCACGGTTGCTTCTTGA+GGG - chr3_3:83706211-83706230 Msa0478900:three_prime_UTR 45.0%
! ATCACGTTTAGAGTCTGGTG+TGG - chr3_3:83706268-83706287 Msa0478900:three_prime_UTR 45.0%
!!! ACGGTGCCGTTTTTAGTCAT+CGG + chr3_3:83706399-83706418 None:intergenic 45.0%
GTAATCAGCACCCATCATCA+TGG + chr3_3:83706505-83706524 None:intergenic 45.0%
! GTCTGAAATTGCATCTCTGC+TGG - chr3_3:83706536-83706555 Msa0478900:CDS 45.0%
! TTGGAAAGCATAGCTCGTCA+TGG + chr3_3:83706691-83706710 None:intergenic 45.0%
AGCTTCTTCAACACCCTGAA+AGG + chr3_3:83706969-83706988 None:intergenic 45.0%
AGCAATCAAGGTAGCTGTTG+AGG - chr3_3:83707392-83707411 Msa0478900:intron 45.0%
GCAATCAAGGTAGCTGTTGA+GGG - chr3_3:83707393-83707412 Msa0478900:intron 45.0%
CAATCAAGGTAGCTGTTGAG+GGG - chr3_3:83707394-83707413 Msa0478900:intron 45.0%
CTCTTTCCGAGACAATTACG+AGG + chr3_3:83707436-83707455 None:intergenic 45.0%
GCAACTTCTTGCTGAAGGAA+TGG + chr3_3:83707460-83707479 None:intergenic 45.0%
!!! CTGCTGTTGGTGGCTTATTT+TGG + chr3_3:83707482-83707501 None:intergenic 45.0%
TATTCATCAGCAAGTGGTGG+CGG + chr3_3:83707507-83707526 None:intergenic 45.0%
GCCGCAATAACTCTACAAAG+AGG + chr3_3:83707563-83707582 None:intergenic 45.0%
GAAGGATGTTCTGTGCATCT+TGG - chr3_3:83707634-83707653 Msa0478900:intron 45.0%
TTGGATATGCTCATTGAGCC+AGG - chr3_3:83707653-83707672 Msa0478900:intron 45.0%
! TTGTTTGACTTCCCATGAGC+AGG + chr3_3:83707722-83707741 None:intergenic 45.0%
TTCAAACCATTGATCCGGGT+AGG - chr3_3:83708181-83708200 Msa0478900:CDS 45.0%
GTGTAGCAAAATCGATGGTG+GGG - chr3_3:83708210-83708229 Msa0478900:CDS 45.0%
!! CAAAATCGATGGTGGGGATT+TGG - chr3_3:83708216-83708235 Msa0478900:CDS 45.0%
TCGGTTCCAACATGGAAGTT+AGG - chr3_3:83708254-83708273 Msa0478900:CDS 45.0%
!! CTGGTTTGGAGGGTTTCTAT+GGG + chr3_3:83708301-83708320 None:intergenic 45.0%
!! TTGGTTGAAGCTGGTTTGGA+GGG + chr3_3:83708311-83708330 None:intergenic 45.0%
TCACTCAGGAAATTCGGTTC+AGG + chr3_3:83708616-83708635 None:intergenic 45.0%
AGCTCCCAAGCCATTATTGT+AGG - chr3_3:83708663-83708682 Msa0478900:intron 45.0%
GCTCCCAAGCCATTATTGTA+GGG - chr3_3:83708664-83708683 Msa0478900:intron 45.0%
CGACCCTACAATAATGGCTT+GGG + chr3_3:83708670-83708689 None:intergenic 45.0%
ACGACCCTACAATAATGGCT+TGG + chr3_3:83708671-83708690 None:intergenic 45.0%
CTTTGTAAGCAACTCCACTC+AGG - chr3_3:83708691-83708710 Msa0478900:CDS 45.0%
ATCTGTGTTCCCCACCTAAT+AGG + chr3_3:83708906-83708925 None:intergenic 45.0%
! TAGGTGGGGAACACAGATTT+TGG - chr3_3:83708908-83708927 Msa0478900:intron 45.0%
!! TGGGGAACACAGATTTTGGT+TGG - chr3_3:83708912-83708931 Msa0478900:intron 45.0%
!!! GGGGAACACAGATTTTGGTT+GGG - chr3_3:83708913-83708932 Msa0478900:intron 45.0%
AGCAAAACTTAAGGCTCGTG+AGG + chr3_3:83709665-83709684 None:intergenic 45.0%
AACAATATGTGGAGTGGGCA+AGG + chr3_3:83710014-83710033 None:intergenic 45.0%
!! AGGATCCAGGAGAGTATTGA+AGG - chr3_3:83710299-83710318 Msa0478900:intron 45.0%
!! GGATCCAGGAGAGTATTGAA+GGG - chr3_3:83710300-83710319 Msa0478900:intron 45.0%
!! GATCCAGGAGAGTATTGAAG+GGG - chr3_3:83710301-83710320 Msa0478900:CDS 45.0%
AAACCCCTTCAATACTCTCC+TGG + chr3_3:83710307-83710326 None:intergenic 45.0%
AGAACTTGGGCTTTCAGTGA+TGG + chr3_3:83710337-83710356 None:intergenic 45.0%
!! ATCATTTTGGGTGGTGGTGC+TGG - chr3_3:83703430-83703449 Msa0478900:intron 50.0%
CACAAAACCCTCCCCAAAAG+TGG + chr3_3:83704135-83704154 Msa0478910:intron 50.0%
!! CACTTTTGGGGAGGGTTTTG+TGG - chr3_3:83704133-83704152 Msa0478900:intron 50.0%
!! TTTTGGGGAGGGTTTTGTGG+AGG - chr3_3:83704136-83704155 Msa0478900:intron 50.0%
CTGGAGAAGCTGGGAAGAAA+TGG - chr3_3:83704312-83704331 Msa0478900:intron 50.0%
GCTGGGAAGAAATGGTTCCA+AGG - chr3_3:83704320-83704339 Msa0478900:intron 50.0%
TCACAGCATCAGCTGTTCCT+TGG + chr3_3:83704340-83704359 Msa0478910:intron 50.0%
AAGGAACAGCTGATGCTGTG+AGG - chr3_3:83704339-83704358 Msa0478900:intron 50.0%
CACAGTTTCGTGTCTTCCCA+TGG - chr3_3:83704869-83704888 Msa0478900:three_prime_UTR 50.0%
GTTTCGAACTGAGACCCTAC+TGG - chr3_3:83705311-83705330 Msa0478900:three_prime_UTR 50.0%
ATCATCCCATCTGCTGTCAG+TGG - chr3_3:83705381-83705400 Msa0478900:intron 50.0%
TCATCCCATCTGCTGTCAGT+GGG - chr3_3:83705382-83705401 Msa0478900:intron 50.0%
GGCACAATGTCCAGGTGAAA+AGG - chr3_3:83705403-83705422 Msa0478900:intron 50.0%
AGTAGGTGGTAGGAATCTCG+GGG + chr3_3:83706053-83706072 Msa0478910:CDS 50.0%
ATTGCATCTCTGCTGGCAGA+AGG - chr3_3:83706543-83706562 Msa0478900:CDS 50.0%
ATCTCTGCTGGCAGAAGGAA+AGG - chr3_3:83706548-83706567 Msa0478900:CDS 50.0%
ATTCATCAGCAAGTGGTGGC+GGG + chr3_3:83707506-83707525 None:intergenic 50.0%
TACACTCCTACCCGGATCAA+TGG + chr3_3:83708190-83708209 None:intergenic 50.0%
TGCTACACTACACTCCTACC+CGG + chr3_3:83708198-83708217 None:intergenic 50.0%
!! GCTGGTTTGGAGGGTTTCTA+TGG + chr3_3:83708302-83708321 None:intergenic 50.0%
!! CTTGGTTGAAGCTGGTTTGG+AGG + chr3_3:83708312-83708331 None:intergenic 50.0%
GCACTTGGTTGAAGCTGGTT+TGG + chr3_3:83708315-83708334 None:intergenic 50.0%
!! GGAAAGCACTTGGTTGAAGC+TGG + chr3_3:83708320-83708339 None:intergenic 50.0%
AGATGCCCTTCAGATCACTC+AGG + chr3_3:83708630-83708649 None:intergenic 50.0%
CATCACCATCACGCTCTTGA+AGG - chr3_3:83708950-83708969 Msa0478900:intron 50.0%
CTCTCCTGGATCCTACAATG+AGG + chr3_3:83710293-83710312 None:intergenic 50.0%
ACTTGGGCTTTCAGTGATGG+TGG + chr3_3:83710334-83710353 None:intergenic 50.0%
GGGAGCCCTTATTATGCCAA+TGG + chr3_3:83710463-83710482 None:intergenic 50.0%
GAGTGCAGCTTATGCTGAAC+GGG + chr3_3:83710483-83710502 None:intergenic 50.0%
GGAGTGCAGCTTATGCTGAA+CGG + chr3_3:83710484-83710503 None:intergenic 50.0%
TGTAGGCGCGAGACAAGTGA+CGG + chr3_3:83704097-83704116 Msa0478910:intron 55.0%
CGTGTCTTCCCATGGATGAC+AGG - chr3_3:83704877-83704896 Msa0478900:three_prime_UTR 55.0%
TGTGCCCACTGACAGCAGAT+GGG + chr3_3:83705389-83705408 Msa0478910:intron 55.0%
TTGTGCCCACTGACAGCAGA+TGG + chr3_3:83705390-83705409 Msa0478910:intron 55.0%
TGTCAGTGGGCACAATGTCC+AGG - chr3_3:83705395-83705414 Msa0478900:intron 55.0%
AGAGTCTGGTGTGGAGCTTC+AGG - chr3_3:83706277-83706296 Msa0478900:three_prime_UTR 55.0%
ACAAGACGCAACAGCCTGAG+TGG + chr3_3:83708708-83708727 None:intergenic 55.0%
! GTTCGCCTTCAAGAGCGTGA+TGG + chr3_3:83708958-83708977 None:intergenic 55.0%
TGGAGTGGGCAAGGAGTCAA+GGG + chr3_3:83710005-83710024 None:intergenic 55.0%
!! GCAGAAGGAAAGGTGCCCGT+TGG - chr3_3:83706558-83706577 Msa0478900:CDS 60.0%
!! GGAAAGGTGCCCGTTGGTGT+TGG - chr3_3:83706564-83706583 Msa0478900:CDS 60.0%
GGTAGCTGTTGAGGGGCTCT+CGG - chr3_3:83707401-83707420 Msa0478900:intron 60.0%
GTGGAGTGGGCAAGGAGTCA+AGG + chr3_3:83710006-83710025 None:intergenic 60.0%
!! AGTGGTGGCGGGACTGCTGT+TGG + chr3_3:83707495-83707514 None:intergenic 65.0%
!! GGTGGCGGGACTGCTGTTGG+TGG + chr3_3:83707492-83707511 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 83702814 83710761 83702814 ID=Msa0478900;Name=Msa0478900
chr3_3 mRNA 83702814 83710761 83702814 ID=Msa0478900-mRNA-1;Parent=Msa0478900;Name=Msa0478900-mRNA-1;_AED=0.12;_eAED=0.12;_QI=224|1|1|1|0.76|0.72|18|1635|530
chr3_3 exon 83702814 83703303 83702814 ID=Msa0478900-mRNA-1:exon:23647;Parent=Msa0478900-mRNA-1
chr3_3 exon 83703460 83703639 83703460 ID=Msa0478900-mRNA-1:exon:23646;Parent=Msa0478900-mRNA-1
chr3_3 exon 83704833 83704959 83704833 ID=Msa0478900-mRNA-1:exon:23645;Parent=Msa0478900-mRNA-1
chr3_3 exon 83705192 83705382 83705192 ID=Msa0478900-mRNA-1:exon:23644;Parent=Msa0478900-mRNA-1
chr3_3 exon 83705853 83706601 83705853 ID=Msa0478900-mRNA-1:exon:23643;Parent=Msa0478900-mRNA-1
chr3_3 exon 83706719 83706779 83706719 ID=Msa0478900-mRNA-1:exon:23642;Parent=Msa0478900-mRNA-1
chr3_3 exon 83706971 83707077 83706971 ID=Msa0478900-mRNA-1:exon:23641;Parent=Msa0478900-mRNA-1
chr3_3 exon 83707277 83707381 83707277 ID=Msa0478900-mRNA-1:exon:23640;Parent=Msa0478900-mRNA-1
chr3_3 exon 83707485 83707571 83707485 ID=Msa0478900-mRNA-1:exon:23639;Parent=Msa0478900-mRNA-1
chr3_3 exon 83707977 83708057 83707977 ID=Msa0478900-mRNA-1:exon:23638;Parent=Msa0478900-mRNA-1
chr3_3 exon 83708159 83708344 83708159 ID=Msa0478900-mRNA-1:exon:23637;Parent=Msa0478900-mRNA-1
chr3_3 exon 83708457 83708550 83708457 ID=Msa0478900-mRNA-1:exon:23636;Parent=Msa0478900-mRNA-1
chr3_3 exon 83708677 83708732 83708677 ID=Msa0478900-mRNA-1:exon:23635;Parent=Msa0478900-mRNA-1
chr3_3 exon 83708840 83708923 83708840 ID=Msa0478900-mRNA-1:exon:23634;Parent=Msa0478900-mRNA-1
chr3_3 exon 83709193 83709285 83709193 ID=Msa0478900-mRNA-1:exon:23633;Parent=Msa0478900-mRNA-1
chr3_3 exon 83709418 83709591 83709418 ID=Msa0478900-mRNA-1:exon:23632;Parent=Msa0478900-mRNA-1
chr3_3 exon 83710080 83710205 83710080 ID=Msa0478900-mRNA-1:exon:23631;Parent=Msa0478900-mRNA-1
chr3_3 exon 83710301 83710761 83710301 ID=Msa0478900-mRNA-1:exon:23630;Parent=Msa0478900-mRNA-1
chr3_3 five_prime_UTR 83710538 83710761 83710538 ID=Msa0478900-mRNA-1:five_prime_utr;Parent=Msa0478900-mRNA-1
chr3_3 CDS 83710301 83710537 83710301 ID=Msa0478900-mRNA-1:cds;Parent=Msa0478900-mRNA-1
chr3_3 CDS 83710080 83710205 83710080 ID=Msa0478900-mRNA-1:cds;Parent=Msa0478900-mRNA-1
chr3_3 CDS 83709418 83709591 83709418 ID=Msa0478900-mRNA-1:cds;Parent=Msa0478900-mRNA-1
chr3_3 CDS 83709193 83709285 83709193 ID=Msa0478900-mRNA-1:cds;Parent=Msa0478900-mRNA-1
chr3_3 CDS 83708840 83708923 83708840 ID=Msa0478900-mRNA-1:cds;Parent=Msa0478900-mRNA-1
chr3_3 CDS 83708677 83708732 83708677 ID=Msa0478900-mRNA-1:cds;Parent=Msa0478900-mRNA-1
chr3_3 CDS 83708457 83708550 83708457 ID=Msa0478900-mRNA-1:cds;Parent=Msa0478900-mRNA-1
chr3_3 CDS 83708159 83708344 83708159 ID=Msa0478900-mRNA-1:cds;Parent=Msa0478900-mRNA-1
chr3_3 CDS 83707977 83708057 83707977 ID=Msa0478900-mRNA-1:cds;Parent=Msa0478900-mRNA-1
chr3_3 CDS 83707485 83707571 83707485 ID=Msa0478900-mRNA-1:cds;Parent=Msa0478900-mRNA-1
chr3_3 CDS 83707277 83707381 83707277 ID=Msa0478900-mRNA-1:cds;Parent=Msa0478900-mRNA-1
chr3_3 CDS 83706971 83707077 83706971 ID=Msa0478900-mRNA-1:cds;Parent=Msa0478900-mRNA-1
chr3_3 CDS 83706719 83706779 83706719 ID=Msa0478900-mRNA-1:cds;Parent=Msa0478900-mRNA-1
chr3_3 CDS 83706500 83706601 83706500 ID=Msa0478900-mRNA-1:cds;Parent=Msa0478900-mRNA-1
chr3_3 three_prime_UTR 83705853 83706499 83705853 ID=Msa0478900-mRNA-1:three_prime_utr;Parent=Msa0478900-mRNA-1
chr3_3 three_prime_UTR 83705192 83705382 83705192 ID=Msa0478900-mRNA-1:three_prime_utr;Parent=Msa0478900-mRNA-1
chr3_3 three_prime_UTR 83704833 83704959 83704833 ID=Msa0478900-mRNA-1:three_prime_utr;Parent=Msa0478900-mRNA-1
chr3_3 three_prime_UTR 83703460 83703639 83703460 ID=Msa0478900-mRNA-1:three_prime_utr;Parent=Msa0478900-mRNA-1
chr3_3 three_prime_UTR 83702814 83703303 83702814 ID=Msa0478900-mRNA-1:three_prime_utr;Parent=Msa0478900-mRNA-1
Gene Sequence

>Msa0478900

ATGGATTCAGCAATATCTTCAACTTATGCATCATCCTTCAGTACCAATCTAAGCAAAATCAGTACTGAAGGAGTTGGAAGAAGAACCAGAAACAGTGTGTTCTTAGGTGAAACCACCAAGGGAAGTTTAAGCACAACAAGATTCCTTACCATTCAATCACCCAAATCATTCATTCCTAAAAATGGAGCTGAACACAACGTTCTCACTTCAGGGATCAATGATTATCAAGACTCCACGACATTTCAAGAGGGACCCTATTTTGAGACTCCAAAAGCAGACCCAAAAAGTGTAGCTTCAATCATTTTGGGTGGTGGTGCTGGAACTCGCCTTTTTCCTCTTACTAGCAAAAGAGCCAAACCTGCGGTTCCAATTGGAGGGTGTTACAGACTCATAGATATCCCTATGAGCAATTGCATCAACAGTGGCATTAGAAAAATATTCATTTTAACACAGTACAATTCTTTCTCTCTCAACCGTCACTTGTCTCGCGCCTACAATTTTGGAAATGTCTCCACTTTTGGGGAGGGTTTTGTGGAGGTATTGGCTGCAACTCAAACATCTGGAGAAGCTGGGAAGAAATGGTTCCAAGGAACAGCTGATGCTGTGAGGCAATTTATATGGGTTTTTGAGGATGCTAAGAACAAGAATGTTGAGCATATATTGATACTTTCTGGTGATCATCTTTACCGAATGAACTATATGGATTTTGTGCAGAAACATATCGACACAAATGCTGATATCACAGTTTCGTGTCTTCCCATGGATGACAGTCGAGCATCAGATTATGGGTTGATGAAAATTGACGAAACAGGCCGCATTATACAGTTTGCAGAAAAGCCCAAGGGATCAGATTTGAAAGCAATGCATGTTGATACCACAGTTCTTGGGTTATCTCAAGAAGAAGCAAAGAAACATCCATATATTGCGTCCATGGGTGTTTACGTGTTTCGAACTGAGACCCTACTGGAACTATTAAAATTGAATGGTTCTACATGCAATGACTTTGGATCTGAAATCATCCCATCTGCTGTCAGTGGGCACAATGTCCAGGCATTTTTGTTCAATGACTACTGGGAAGATATTGGAACCATAGAGTCCTTCTTTGATGCAAATTTGGCCCTAACAGAACCTGCTCCAAAATTTCAATTCTATGATCCAAAGACACCTTTCTTCACTTCCCCGAGATTCCTACCACCTACTAAAGTAGAAAAATGCAAGATTGTGGATGCAATTATTTCTCACGGTTGCTTCTTGAGGGAGTGTAGTGTTCAACATTCTATTGTTGGAATACGATCACGTTTAGAGTCTGGTGTGGAGCTTCAGGATACCATGATGATGGGTGCTGATTACTATCAAACTGAGTCTGAAATTGCATCTCTGCTGGCAGAAGGAAAGGTGCCCGTTGGTGTTGGAGAAAATACCAAAATCAGGAATTGTATAATTGACAAGAACGCAAGAATTGGAAGAAATGCAATCATTACAAATGCAGATGGTGTTGAAGAAGCTGACAAAACTAAGGAAGGATTTTACATTAGGTCGGGCATCACCGTTATACTGAAGAATGCAACAATTCAAGATGGAACAGTTATATGA
Protein sequence

>Msa0478900

MDSAISSTYASSFSTNLSKISTEGVGRRTRNSVFLGETTKGSLSTTRFLTIQSPKSFIPKNGAEHNVLTSGINDYQDSTTFQEGPYFETPKADPKSVASIILGGGAGTRLFPLTSKRAKPAVPIGGCYRLIDIPMSNCINSGIRKIFILTQYNSFSLNRHLSRAYNFGNVSTFGEGFVEVLAATQTSGEAGKKWFQGTADAVRQFIWVFEDAKNKNVEHILILSGDHLYRMNYMDFVQKHIDTNADITVSCLPMDDSRASDYGLMKIDETGRIIQFAEKPKGSDLKAMHVDTTVLGLSQEEAKKHPYIASMGVYVFRTETLLELLKLNGSTCNDFGSEIIPSAVSGHNVQAFLFNDYWEDIGTIESFFDANLALTEPAPKFQFYDPKTPFFTSPRFLPPTKVEKCKIVDAIISHGCFLRECSVQHSIVGIRSRLESGVELQDTMMMGADYYQTESEIASLLAEGKVPVGVGENTKIRNCIIDKNARIGRNAIITNADGVEEADKTKEGFYIRSGITVILKNATIQDGTVI*