AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0479370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0479370 MtrunA17_Chr8g0375171 85.124 121 16 1 1 119 129 249 3.02e-68 221
Msa0479370 MtrunA17_Chr3g0136911 81.818 121 20 1 1 119 131 251 8.01e-64 209
Msa0479370 MtrunA17_Chr3g0142471 87.500 96 10 1 1 94 6 101 2.06e-56 171
Msa0479370 MtrunA17_Chr1g0154941 29.204 113 59 2 3 109 88 185 6.54e-14 64.7
Msa0479370 MtrunA17_Chr1g0155911 28.947 114 65 2 1 108 113 216 5.90e-13 63.9
Msa0479370 MtrunA17_Chr8g0345421 30.973 113 55 3 3 108 89 185 1.24e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0479370 AT3G23780.1 56.349 126 47 3 1 119 116 240 1.58e-38 137
Msa0479370 AT3G23780.2 56.349 126 47 3 1 119 116 240 1.58e-38 137
Msa0479370 AT3G18090.2 52.893 121 49 3 6 119 3 122 6.27e-35 127
Msa0479370 AT3G18090.1 52.893 121 49 3 6 119 3 122 6.92e-35 127
Msa0479370 AT3G18090.3 52.893 121 49 3 6 119 3 122 7.05e-35 127
Msa0479370 AT4G21710.1 28.947 114 65 2 1 108 110 213 1.16e-12 63.5

Find 256 sgRNAs with CRISPR-Local

Find 409 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGAAGACATTGTTAATTT+TGG 0.067293 3_3:+84342108 Msa0479370:three_prime_UTR
AAAGCATCGACTCTTAAATT+TGG 0.140721 3_3:-84341802 None:intergenic
TGGGGTGTTCAGTATTTATT+TGG 0.178850 3_3:+84341655 Msa0479370:three_prime_UTR
AAAAGGATGGAAAGGATTTC+TGG 0.188486 3_3:+84339648 Msa0479370:three_prime_UTR
GTATGTCTTTCCGAACATTA+AGG 0.230507 3_3:+84339320 Msa0479370:three_prime_UTR
AAATAGGATGGTTGTTAAAT+TGG 0.238146 3_3:+84339001 Msa0479370:three_prime_UTR
GGTCCGCTCGCTCATATTTA+TGG 0.239408 3_3:+84342950 Msa0479370:three_prime_UTR
CCTTTCCTAAACCAGCTTCT+AGG 0.240137 3_3:-84342504 None:intergenic
CCGAAATCTGAATTCTATAA+TGG 0.244010 3_3:+84341922 Msa0479370:three_prime_UTR
CATGGTGAAGGTTCTCTTAC+TGG 0.253238 3_3:+84339374 Msa0479370:three_prime_UTR
TGTCTGGTCAGCGGGTGAAC+TGG 0.258911 3_3:-84343038 None:intergenic
TTGGAGACCATTTGTAATAA+TGG 0.265166 3_3:-84339589 None:intergenic
AATCTTATGTTCTGATTTGA+TGG 0.287097 3_3:+84343512 Msa0479370:three_prime_UTR
AGTAATCTGCTCAAGATTAA+AGG 0.287112 3_3:+84341550 Msa0479370:three_prime_UTR
ATCATGTTCTTCAACGAGTA+TGG 0.290389 3_3:+84337727 Msa0479370:five_prime_UTR
CAGTGTTCCTGAACTTTACT+TGG 0.298016 3_3:-84343013 None:intergenic
CAAAGCTGAAATTGAAAATA+AGG 0.303815 3_3:+84342062 Msa0479370:three_prime_UTR
GATGATACTACCACTGTTCT+TGG 0.307863 3_3:+84340672 Msa0479370:three_prime_UTR
TATAATCAATTCATCACTTC+TGG 0.311232 3_3:+84337775 Msa0479370:five_prime_UTR
AAAGACAGAGTCTTCCTAAA+TGG 0.314403 3_3:+84340699 Msa0479370:three_prime_UTR
TTGATATGTTGTTCTTATCT+AGG 0.314979 3_3:+84341719 Msa0479370:three_prime_UTR
AGAAGTGATGAATTGATTAT+AGG 0.315125 3_3:-84337773 None:intergenic
TGTTATGCTACGGTTAAGTT+TGG 0.315379 3_3:+84337883 Msa0479370:five_prime_UTR
GAGAAGAGAGAAATAACTAT+TGG 0.321428 3_3:+84338362 Msa0479370:CDS
TAGCCTGTGAAGAATGCTTC+TGG 0.321494 3_3:-84341759 None:intergenic
GTCTCTGAGGATAAAATAAT+TGG 0.326017 3_3:-84341831 None:intergenic
CAATCACACCACTATGCAAT+AGG 0.329803 3_3:-84341603 None:intergenic
AAATATTTCTGAAGAGGCTT+TGG 0.330464 3_3:+84338928 Msa0479370:CDS
CAGGTTAGAAGTCCAGTTCT+TGG 0.334740 3_3:+84342330 Msa0479370:intron
CAAAACTGATGTTCAAGTTC+AGG 0.334875 3_3:+84337980 Msa0479370:CDS
AGTGACAGATGAAGAGAAAT+AGG 0.335763 3_3:+84338985 Msa0479370:exon
CGATTTGGAGGTATCAAGTT+TGG 0.336084 3_3:+84343080 Msa0479370:three_prime_UTR
CAAAATGCTTTCAATTCCTT+CGG 0.340906 3_3:+84337802 Msa0479370:five_prime_UTR
CCAAAATTAACAATGTCTTC+AGG 0.345264 3_3:-84342108 None:intergenic
CCATTATAGAATTCAGATTT+CGG 0.348443 3_3:-84341922 None:intergenic
AAGCATCGACTCTTAAATTT+GGG 0.349756 3_3:-84341801 None:intergenic
CTGTGGACTAGTAAAGAATT+TGG 0.354479 3_3:+84340569 Msa0479370:three_prime_UTR
CAACTCCTAGAAGCTGGTTT+AGG 0.355435 3_3:+84342499 Msa0479370:three_prime_UTR
AAGCATTCTTCACAGGCTAT+TGG 0.358628 3_3:+84341763 Msa0479370:three_prime_UTR
ATTGTTGATCTCATCGATTA+TGG 0.358647 3_3:+84339135 Msa0479370:three_prime_UTR
GTTCTCTTACTGGCTTATAC+TGG 0.359333 3_3:+84339384 Msa0479370:three_prime_UTR
AAGTATAGATTCAGTTATAT+TGG 0.360968 3_3:-84340613 None:intergenic
GAAGCACCGCTGAGACAAAA+TGG 0.361307 3_3:-84343598 None:intergenic
TGAACATGTACTTATGAGTT+TGG 0.362538 3_3:+84343429 Msa0479370:three_prime_UTR
CTTGGATAACCTGGATTACT+AGG 0.363360 3_3:+84341883 Msa0479370:three_prime_UTR
CTCCAACCCAGTCTCCATTT+AGG 0.365455 3_3:-84340713 None:intergenic
ACATGTTCAAAAGTCTAGTC+TGG 0.367771 3_3:-84343415 None:intergenic
CACAAAACAAGGTATTGTTC+CGG 0.370718 3_3:+84342425 Msa0479370:three_prime_UTR
ATCATGAAATTGAGATGTAT+TGG 0.374958 3_3:+84343661 Msa0479370:three_prime_UTR
GTCCGCTCGCTCATATTTAT+GGG 0.378626 3_3:+84342951 Msa0479370:three_prime_UTR
TATGTCTTTCCGAACATTAA+GGG 0.378939 3_3:+84339321 Msa0479370:three_prime_UTR
GTTGCAGGCATCCTTCTCAC+TGG 0.379210 3_3:+84340508 Msa0479370:intron
TTCCTATGTTGTTTGATTGT+GGG 0.380201 3_3:+84340634 Msa0479370:three_prime_UTR
TTCAGATTCCGCACCGTTTG+TGG 0.380780 3_3:+84340740 Msa0479370:three_prime_UTR
CTCCAGTAGAGAACACTCTT+TGG 0.384260 3_3:-84339608 None:intergenic
AGACCTGACTTGACCATAAC+AGG 0.387165 3_3:-84338392 None:intergenic
TTATCACTCCGAACTTTCTT+CGG 0.390704 3_3:-84338296 None:intergenic
GTCTGGTCAGCGGGTGAACT+GGG 0.393695 3_3:-84343037 None:intergenic
GTGATCTTGCGACCGGTATC+TGG 0.396475 3_3:+84343213 Msa0479370:three_prime_UTR
AATATTTCTGAAGAGGCTTT+GGG 0.397425 3_3:+84338929 Msa0479370:CDS
TCTGGCGTGGTTGCAACTCT+TGG 0.398378 3_3:+84339666 Msa0479370:three_prime_UTR
CTTCCTATGTTGTTTGATTG+TGG 0.400356 3_3:+84340633 Msa0479370:three_prime_UTR
GTTGCTGACAGGAAGCGATT+TGG 0.400503 3_3:+84343065 Msa0479370:three_prime_UTR
ACCCTTCTGTCCGTGCATAC+TGG 0.401250 3_3:-84342364 None:intergenic
CTGATGCACCATGAGCTATC+AGG 0.402002 3_3:-84343121 None:intergenic
GGGATGACTTTCAAAATAAG+AGG 0.403829 3_3:+84339427 Msa0479370:three_prime_UTR
CCTGTCAGCAACAGGCTGTC+TGG 0.404467 3_3:-84343054 None:intergenic
CGAAATCTGAATTCTATAAT+GGG 0.405897 3_3:+84341923 Msa0479370:three_prime_UTR
TTCAGTACACGGGAAAGGTT+GGG 0.406344 3_3:+84339742 Msa0479370:three_prime_UTR
TGGTTTGCAATGGATTAGTT+TGG 0.407051 3_3:-84339689 None:intergenic
GACAATAACTTAGCTCCATA+TGG 0.412577 3_3:-84343306 None:intergenic
AGAGGACTTCAAGACTGCTT+GGG 0.413762 3_3:+84341636 Msa0479370:three_prime_UTR
TGATTCACAGAATCAGCAAT+AGG 0.415727 3_3:-84343256 None:intergenic
CAGAGGACCAAGTAAAGTTC+AGG 0.419559 3_3:+84343006 Msa0479370:three_prime_UTR
GATTCTCCGTCCACTCTTAG+TGG 0.423772 3_3:+84341525 Msa0479370:three_prime_UTR
TTTAGGATTTCTGGAGTCTC+AGG 0.424267 3_3:+84342389 Msa0479370:three_prime_UTR
ATTGATTATAGGAATTGATT+TGG 0.427735 3_3:-84337762 None:intergenic
TGGTCAAGTCAGGTCTCTGC+TGG 0.429579 3_3:+84338399 Msa0479370:CDS
CTCCAAAGAGTGTTCTCTAC+TGG 0.432985 3_3:+84339606 Msa0479370:three_prime_UTR
AATCGCTTCCTGTCAGCAAC+AGG 0.434054 3_3:-84343062 None:intergenic
GCATCCTTCTCACTGGGGTA+AGG 0.434903 3_3:+84340515 Msa0479370:three_prime_UTR
AGAAGAGAGAAATAACTATT+GGG 0.437663 3_3:+84338363 Msa0479370:CDS
ACGAAATGTATCACATTTGT+CGG 0.440086 3_3:-84339208 None:intergenic
GTGAAGAATGCTTCTGGGAT+TGG 0.442112 3_3:-84341753 None:intergenic
TGCGGATTTATGACAATATC+CGG 0.444014 3_3:-84342444 None:intergenic
TGCTGTTGTTTCGTTAAGAC+AGG 0.445226 3_3:+84342217 Msa0479370:three_prime_UTR
TACATATTCCGAAGAAAGTT+CGG 0.448036 3_3:+84338288 Msa0479370:CDS
GATGCTTCCATTATTACAAA+TGG 0.448086 3_3:+84339582 Msa0479370:three_prime_UTR
CAACAGGCTGTCTGGTCAGC+GGG 0.448282 3_3:-84343046 None:intergenic
CAGTATTTATTTGGAAAAGA+GGG 0.455985 3_3:+84341664 Msa0479370:three_prime_UTR
CTGCCTGTTATGGTCAAGTC+AGG 0.458511 3_3:+84338389 Msa0479370:CDS
TATTGGGAGACTGCCTGTTA+TGG 0.459953 3_3:+84338379 Msa0479370:CDS
GGGTTTCAAATATTCCGTAT+TGG 0.461002 3_3:+84338949 Msa0479370:CDS
TCGGAAAGACATACAAGTTA+AGG 0.463583 3_3:-84339311 None:intergenic
GTGGAGAATTCCAGCATTGA+AGG 0.466466 3_3:+84339023 Msa0479370:three_prime_UTR
GTCTGTGATGGCTTCGACAG+AGG 0.466559 3_3:-84342575 None:intergenic
TCAGTATTTATTTGGAAAAG+AGG 0.468211 3_3:+84341663 Msa0479370:three_prime_UTR
AAGAGGACTTCAAGACTGCT+TGG 0.469345 3_3:+84341635 Msa0479370:three_prime_UTR
GGAAAGGGTATTGCTTGTGT+TGG 0.470948 3_3:+84342520 Msa0479370:three_prime_UTR
TGTTTCCTCTCTACCCCAGT+TGG 0.472232 3_3:+84340540 Msa0479370:three_prime_UTR
AACAATCTCTTTATCTGAAG+TGG 0.475073 3_3:-84339118 None:intergenic
GAGTCTTCCTAAATGGAGAC+TGG 0.475484 3_3:+84340706 Msa0479370:three_prime_UTR
GAGAACTTATCTCCAAGAAC+TGG 0.476721 3_3:-84342342 None:intergenic
TGGAGGCTACTTTCTGATCA+AGG 0.477024 3_3:+84338460 Msa0479370:CDS
CTAGAAGCTGGTTTAGGAAA+GGG 0.480354 3_3:+84342505 Msa0479370:three_prime_UTR
TGGAGCTAAGTTATTGTCTC+AGG 0.481907 3_3:+84343311 Msa0479370:three_prime_UTR
TAGGATGGTTGTTAAATTGG+TGG 0.482458 3_3:+84339004 Msa0479370:three_prime_UTR
TTGCAGGCATCCTTCTCACT+GGG 0.483891 3_3:+84340509 Msa0479370:intron
TGCAGTCGCTGGTAGAATGT+AGG 0.485356 3_3:-84342975 None:intergenic
AATAAGAGGCTTGAGTTGAC+TGG 0.485554 3_3:+84339441 Msa0479370:three_prime_UTR
CCATCACAGACCAGCTTCAC+AGG 0.491566 3_3:+84342587 Msa0479370:three_prime_UTR
GTTCTTCCCCTCATCATTCG+AGG 0.493164 3_3:-84342192 None:intergenic
TGTTCTTCTTAATTCAGCCA+TGG 0.493474 3_3:-84339709 None:intergenic
AAGAGCAAATATTTCTGAAG+AGG 0.499789 3_3:+84338922 Msa0479370:CDS
TTACTTTGACCTAGTAATCC+AGG 0.501373 3_3:-84341892 None:intergenic
GTTCAGTACACGGGAAAGGT+TGG 0.502117 3_3:+84339741 Msa0479370:three_prime_UTR
CATGTTCAAAAGTCTAGTCT+GGG 0.502421 3_3:-84343414 None:intergenic
AAGGCTAAAACACACTGAAA+GGG 0.502460 3_3:+84342145 Msa0479370:three_prime_UTR
GATGGCTTCGACAGAGGAAG+TGG 0.504155 3_3:-84342569 None:intergenic
GGCACGGTACCTGGCATACA+TGG 0.508318 3_3:+84339356 Msa0479370:three_prime_UTR
AGGTATCAAGTTTGGTGAGA+TGG 0.508789 3_3:+84343088 Msa0479370:three_prime_UTR
TGTTCAGATCTGAGCACATA+AGG 0.509041 3_3:+84342034 Msa0479370:three_prime_UTR
GCTCTGCAAAGAGACCTCTA+TGG 0.509833 3_3:+84339525 Msa0479370:three_prime_UTR
GATTCACAGAATCAGCAATA+GGG 0.510222 3_3:-84343255 None:intergenic
CTGACATGTGGTGCAGTCGC+TGG 0.510733 3_3:-84342986 None:intergenic
TGAAAGGGGACATGTTCAAA+AGG 0.515382 3_3:+84342160 Msa0479370:three_prime_UTR
CTCCAGTATGCACGGACAGA+AGG 0.516490 3_3:+84342362 Msa0479370:three_prime_UTR
GTAAAGAATTTGGCTGTCGC+AGG 0.518111 3_3:+84340579 Msa0479370:three_prime_UTR
ACATTTGTCGGCTTCACGAA+TGG 0.519230 3_3:-84339196 None:intergenic
AGCCTGTGAAGAATGCTTCT+GGG 0.520265 3_3:-84341758 None:intergenic
TTTCTTAGAGGAACGTGTCA+AGG 0.521437 3_3:+84339251 Msa0479370:three_prime_UTR
TCGACAGAGGAAGTGGAGAA+AGG 0.523269 3_3:-84342562 None:intergenic
GCAGTCGCTGGTAGAATGTA+GGG 0.524612 3_3:-84342974 None:intergenic
TCTGATTGTCTTGGATAACC+TGG 0.526075 3_3:+84341874 Msa0479370:three_prime_UTR
CGGAGTGATAAATTCAAGAC+AGG 0.527623 3_3:+84338308 Msa0479370:CDS
TTCTTGGAAGGGTCAAAACC+AGG 0.528007 3_3:-84337841 None:intergenic
TCTGATCAAGGGTGCTGAGA+AGG 0.528492 3_3:+84338472 Msa0479370:CDS
CACATGCTCGGAAGCGAATG+TGG 0.528935 3_3:+84339499 Msa0479370:three_prime_UTR
GTCTCAGGAGCTGTTCAGCA+TGG 0.529733 3_3:+84343326 Msa0479370:three_prime_UTR
ATCGATTATGGAGAGGGAGA+TGG 0.529999 3_3:+84339147 Msa0479370:three_prime_UTR
CCAGCTTCTAGGAGTTGACC+AGG 0.530000 3_3:-84342493 None:intergenic
TTTCCCTCACGACAAACTCC+TGG 0.530380 3_3:+84342475 Msa0479370:three_prime_UTR
ATATAATCAAGAAGATTCCT+TGG 0.530675 3_3:+84341981 Msa0479370:three_prime_UTR
TCTGAGGATAAAATAATTGG+TGG 0.531720 3_3:-84341828 None:intergenic
ATTAAATAAAGAACACTTGG+AGG 0.533930 3_3:-84343492 None:intergenic
CAAATGTGATACATTTCGTA+GGG 0.535115 3_3:+84339212 Msa0479370:three_prime_UTR
CGAGTATACAATGGGAGGAC+TGG 0.535544 3_3:+84342914 Msa0479370:three_prime_UTR
ACAACAACATCTGATTGTCT+TGG 0.535546 3_3:+84341865 Msa0479370:three_prime_UTR
GCATGTACAAATGCAAACTA+AGG 0.536411 3_3:+84343537 Msa0479370:three_prime_UTR
AATCACACCACTATGCAATA+GGG 0.536670 3_3:-84341602 None:intergenic
GAACCTTCACCATGTATGCC+AGG 0.538389 3_3:-84339365 None:intergenic
TAAATTCAAGACAGGAAAAG+AGG 0.540476 3_3:+84338316 Msa0479370:CDS
CCAGACAGCCTGTTGCTGAC+AGG 0.540994 3_3:+84343054 Msa0479370:three_prime_UTR
TTGTATGCAACTGTCCAATA+CGG 0.546380 3_3:-84338963 None:intergenic
AATTCAGCCATGGTTTGCAA+TGG 0.546388 3_3:-84339699 None:intergenic
CAAGGCTAAAACACACTGAA+AGG 0.546391 3_3:+84342144 Msa0479370:three_prime_UTR
CTCTGAAGACGAGCATGTCT+AGG 0.548315 3_3:-84337936 None:intergenic
GCTGACAGGAAGCGATTTGG+AGG 0.548407 3_3:+84343068 Msa0479370:three_prime_UTR
ACAGATGAAGAGAAATAGGA+TGG 0.549277 3_3:+84338989 Msa0479370:exon
CCTGTGAAGCTGGTCTGTGA+TGG 0.549914 3_3:-84342587 None:intergenic
GAAAAGAACGAGTATACAAT+GGG 0.550304 3_3:+84342906 Msa0479370:three_prime_UTR
AAGTGCACTTTGCACATGCT+CGG 0.551400 3_3:+84339487 Msa0479370:three_prime_UTR
TTCCTAAATGGAGACTGGGT+TGG 0.557268 3_3:+84340711 Msa0479370:three_prime_UTR
TTTCGTAGCTCTGCCACAAA+CGG 0.557609 3_3:-84340753 None:intergenic
GGAAAGCTTACAGTTACGCC+TGG 0.558089 3_3:+84337823 Msa0479370:five_prime_UTR
GTGGCTGTCAATGTGCATCT+TGG 0.559074 3_3:+84341958 Msa0479370:three_prime_UTR
CCTAGAAGCTGGTTTAGGAA+AGG 0.564187 3_3:+84342504 Msa0479370:three_prime_UTR
ACAATGGGAGGACTGGTGAC+AGG 0.565021 3_3:+84342921 Msa0479370:three_prime_UTR
GCACTCGTCAATAGATTCTG+AGG 0.566118 3_3:-84339289 None:intergenic
CCTGGTCAACTCCTAGAAGC+TGG 0.568361 3_3:+84342493 Msa0479370:three_prime_UTR
GCAACAGGCTGTCTGGTCAG+CGG 0.568700 3_3:-84343047 None:intergenic
AAGATTAAATAAAGAACACT+TGG 0.569091 3_3:-84343495 None:intergenic
TGATCAGAAAGTAGCCTCCA+TGG 0.573050 3_3:-84338457 None:intergenic
TGCTCGGAAGCGAATGTGGA+AGG 0.573065 3_3:+84339503 Msa0479370:three_prime_UTR
GATCTCATCGATTATGGAGA+GGG 0.573846 3_3:+84339141 Msa0479370:three_prime_UTR
TATGTTGTTTGATTGTGGGA+TGG 0.574532 3_3:+84340638 Msa0479370:three_prime_UTR
ATCCCAGAAGCATTCTTCAC+AGG 0.574611 3_3:+84341756 Msa0479370:three_prime_UTR
GGTTTGTTTGTTGAGCACTA+CGG 0.576125 3_3:+84343682 Msa0479370:three_prime_UTR
TCAGTACACGGGAAAGGTTG+GGG 0.576197 3_3:+84339743 Msa0479370:three_prime_UTR
TTCTTAGAGGAACGTGTCAA+GGG 0.577874 3_3:+84339252 Msa0479370:three_prime_UTR
GGAGGCTACTTTCTGATCAA+GGG 0.578986 3_3:+84338461 Msa0479370:CDS
TGAACATTACTGTTATGCTA+CGG 0.579819 3_3:+84337873 Msa0479370:five_prime_UTR
ACTCGCCACCACAATGTCAT+CGG 0.580272 3_3:-84343280 None:intergenic
TCTCAGGAGCTGTTCAGCAT+GGG 0.581208 3_3:+84343327 Msa0479370:three_prime_UTR
TTTCACCAACTGGGGTAGAG+AGG 0.581252 3_3:-84340545 None:intergenic
TTTGGAAAGACAGAGCATCA+AGG 0.581336 3_3:+84342126 Msa0479370:three_prime_UTR
GAAGAGGCGCTCATACAAGT+TGG 0.582334 3_3:-84343144 None:intergenic
GCATAAAATAGTATCCATAC+CGG 0.583912 3_3:-84339096 None:intergenic
AGGACTGGTGACAGGTGAGA+TGG 0.584227 3_3:+84342929 Msa0479370:three_prime_UTR
TGAAACATTACCTGTGAAGC+TGG 0.590142 3_3:-84342597 None:intergenic
AAATGAAGAGAAGTTGCTCA+CGG 0.590239 3_3:+84339052 Msa0479370:three_prime_UTR
AGACGAATCACTCGGTGAAG+AGG 0.591833 3_3:-84343160 None:intergenic
AACTAATCCATTGCAAACCA+TGG 0.593737 3_3:+84339692 Msa0479370:three_prime_UTR
GTGCTGTCCTCGAATGATGA+GGG 0.595657 3_3:+84342185 Msa0479370:three_prime_UTR
TACTAACCACTAAGAGTGGA+CGG 0.596131 3_3:-84341531 None:intergenic
ACAAATGTGATACATTTCGT+AGG 0.596270 3_3:+84339211 Msa0479370:three_prime_UTR
GTCTGGGGAAAGCATTAGAG+TGG 0.597271 3_3:-84343398 None:intergenic
GATGGAAAGGATTTCTGGCG+TGG 0.598035 3_3:+84339653 Msa0479370:three_prime_UTR
GAGGACTTCAAGACTGCTTG+GGG 0.598252 3_3:+84341637 Msa0479370:three_prime_UTR
GAGTGTTCTCTACTGGAGCA+TGG 0.598651 3_3:+84339613 Msa0479370:three_prime_UTR
AAACATCTCAATCTCCATAG+AGG 0.600669 3_3:-84339539 None:intergenic
TGACCAGGAGTTTGTCGTGA+GGG 0.601836 3_3:-84342478 None:intergenic
GAATAAAAGTGAACCTGATG+AGG 0.601964 3_3:-84340798 None:intergenic
TCCAGTATGCACGGACAGAA+GGG 0.602180 3_3:+84342363 Msa0479370:three_prime_UTR
TGTCTGTTGAGATTCCGGTA+TGG 0.606023 3_3:+84339082 Msa0479370:three_prime_UTR
AGGCTAAAACACACTGAAAG+GGG 0.606832 3_3:+84342146 Msa0479370:three_prime_UTR
CTGAGGATAAAATAATTGGT+GGG 0.607552 3_3:-84341827 None:intergenic
CAAGTAAAGTTCAGGAACAC+TGG 0.607699 3_3:+84343014 Msa0479370:three_prime_UTR
GGAAAAGAACGAGTATACAA+TGG 0.609358 3_3:+84342905 Msa0479370:three_prime_UTR
TGCAAATGTGATCTTGCGAC+CGG 0.612849 3_3:+84343206 Msa0479370:three_prime_UTR
ACAAGTTCAGTACACGGGAA+AGG 0.613183 3_3:+84339737 Msa0479370:three_prime_UTR
CGTGATTGCCTGATAGCTCA+TGG 0.615327 3_3:+84343113 Msa0479370:three_prime_UTR
GATGTTGTTGTCTGAAATAG+TGG 0.615602 3_3:-84341853 None:intergenic
GCATATTATCTGACGCAGGA+AGG 0.620184 3_3:+84341503 Msa0479370:three_prime_UTR
TTACTTGGTCCTCTGACATG+TGG 0.623409 3_3:-84342998 None:intergenic
CAAACCTTACCCCAGTGAGA+AGG 0.623788 3_3:-84340519 None:intergenic
GATAAGTTCTCCAGTATGCA+CGG 0.624516 3_3:+84342354 Msa0479370:three_prime_UTR
ATCCCACAATCAAACAACAT+AGG 0.628272 3_3:-84340636 None:intergenic
GTGGTGGCGAGTGTTCCATA+TGG 0.630246 3_3:+84343291 Msa0479370:three_prime_UTR
TAATGGGCAGAATGCAATTG+TGG 0.631335 3_3:+84341939 Msa0479370:three_prime_UTR
CGTAACTGTAAGCTTTCCGA+AGG 0.633056 3_3:-84337818 None:intergenic
CACTCGTCAATAGATTCTGA+GGG 0.638441 3_3:-84339288 None:intergenic
CAGAGCTACGAAATAGAAGA+CGG 0.643146 3_3:+84340763 Msa0479370:three_prime_UTR
TGATCTCATCGATTATGGAG+AGG 0.644956 3_3:+84339140 Msa0479370:three_prime_UTR
ATACTCGTTGAAGAACATGA+TGG 0.645937 3_3:-84337725 None:intergenic
AGTCTTCCTAAATGGAGACT+GGG 0.646042 3_3:+84340707 Msa0479370:three_prime_UTR
TGTGCTGTCCTCGAATGATG+AGG 0.647960 3_3:+84342184 Msa0479370:three_prime_UTR
GGGAAAGCATTAGAGTGGAG+AGG 0.651904 3_3:-84343393 None:intergenic
AGTGATTGTGAATTTGACCA+TGG 0.651979 3_3:+84338440 Msa0479370:CDS
GCGACTGCACCACATGTCAG+AGG 0.652993 3_3:+84342989 Msa0479370:three_prime_UTR
AGATTACTAACCACTAAGAG+TGG 0.653431 3_3:-84341535 None:intergenic
TGTGATTGCTGAAGAAGAAG+AGG 0.654598 3_3:+84341618 Msa0479370:three_prime_UTR
TGAATCAGCCGATGACATTG+TGG 0.662510 3_3:+84343272 Msa0479370:three_prime_UTR
ACCCCAGTTGGTGAAAACTG+TGG 0.664223 3_3:+84340552 Msa0479370:three_prime_UTR
AAGAACGAGTATACAATGGG+AGG 0.664562 3_3:+84342909 Msa0479370:three_prime_UTR
AACTGCGCTTCTTTGCAGCG+TGG 0.666059 3_3:+84342009 Msa0479370:three_prime_UTR
GGCCCATAAATATGAGCGAG+CGG 0.666642 3_3:-84342953 None:intergenic
AGGCAACAAGTTCAGTACAC+GGG 0.669887 3_3:+84339732 Msa0479370:three_prime_UTR
ATGCGCATATTATCTGACGC+AGG 0.670598 3_3:+84341499 Msa0479370:three_prime_UTR
GTACCTGGCATACATGGTGA+AGG 0.671158 3_3:+84339362 Msa0479370:three_prime_UTR
AAGGCAACAAGTTCAGTACA+CGG 0.674753 3_3:+84339731 Msa0479370:three_prime_UTR
TGCTGTCCTCGAATGATGAG+GGG 0.676097 3_3:+84342186 Msa0479370:three_prime_UTR
TCGTCAATAGATTCTGAGGG+CGG 0.676515 3_3:-84339285 None:intergenic
TTGACCAGGAGTTTGTCGTG+AGG 0.682700 3_3:-84342479 None:intergenic
TGTATCTGAGACGAATCACT+CGG 0.687710 3_3:-84343168 None:intergenic
TGCAGGCATCCTTCTCACTG+GGG 0.689696 3_3:+84340510 Msa0479370:intron
GTCTGAAATAGTGGTCTCTG+AGG 0.695322 3_3:-84341844 None:intergenic
AGAAGCGCAGTTCATCACCA+AGG 0.699703 3_3:-84341998 None:intergenic
ATCAGCCGATGACATTGTGG+TGG 0.700098 3_3:+84343275 Msa0479370:three_prime_UTR
TAGCTCTGCCACAAACGGTG+CGG 0.701175 3_3:-84340748 None:intergenic
ATGTTCAAAAGTCTAGTCTG+GGG 0.701919 3_3:-84343413 None:intergenic
AAATGTGATACATTTCGTAG+GGG 0.709049 3_3:+84339213 Msa0479370:three_prime_UTR
ATCTTGCGACCGGTATCTGG+TGG 0.711553 3_3:+84343216 Msa0479370:three_prime_UTR
GTGAGGGAAATGCATGCATG+CGG 0.735583 3_3:-84342462 None:intergenic
TGGCTGAATTAAGAAGAACA+AGG 0.738169 3_3:+84339712 Msa0479370:three_prime_UTR
GATTGTGAATTTGACCATGG+AGG 0.783133 3_3:+84338443 Msa0479370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAGTATTCATAATAAATTA+AGG + chr3_3:84338050-84338069 Msa0479370:intron 10.0%
!!! TACATATTTTATACATCTTA+TGG + chr3_3:84338549-84338568 Msa0479370:intron 15.0%
!!! TTACAAAATCCTATTTTTAT+AGG + chr3_3:84338733-84338752 Msa0479370:intron 15.0%
!!! TACAAAATCCTATTTTTATA+GGG + chr3_3:84338734-84338753 Msa0479370:intron 15.0%
!!! TTTTTAATCCCTATAAAAAT+AGG - chr3_3:84338745-84338764 None:intergenic 15.0%
!! ATGTCTAACATATAATTAAA+TGG + chr3_3:84341052-84341071 Msa0479370:intron 15.0%
!! GAAATACTAAATAAATATTG+TGG + chr3_3:84341355-84341374 Msa0479370:intron 15.0%
!!! TGTATTTTATGTTATTTTAG+AGG + chr3_3:84342658-84342677 Msa0479370:intron 15.0%
!! ATTGATTATAGGAATTGATT+TGG - chr3_3:84337765-84337784 None:intergenic 20.0%
!!! AAAGTTTTCATATTTCTATG+TGG + chr3_3:84338026-84338045 Msa0479370:intron 20.0%
!!! AAGTTTTCATATTTCTATGT+GGG + chr3_3:84338027-84338046 Msa0479370:intron 20.0%
!!! TATTGTGTATTTTTGAAATG+TGG + chr3_3:84338168-84338187 Msa0479370:intron 20.0%
!! AGTTTAACAAAATTTATGCA+GGG - chr3_3:84338613-84338632 None:intergenic 20.0%
!! AAGTTTAACAAAATTTATGC+AGG - chr3_3:84338614-84338633 None:intergenic 20.0%
!! ATTTGAGTAAAATTTATCCA+CGG + chr3_3:84338703-84338722 Msa0479370:intron 20.0%
!! TATATTGAGTCCAAAAAAAA+AGG - chr3_3:84339920-84339939 None:intergenic 20.0%
!!! TTTACATGTTTAAGTTGTTT+AGG - chr3_3:84339952-84339971 None:intergenic 20.0%
!!! TTAGTAAGTTCTGATTAAAA+TGG + chr3_3:84340197-84340216 Msa0479370:intron 20.0%
!!! AATGCTTTCATTCATTTTAA+TGG + chr3_3:84340476-84340495 Msa0479370:intron 20.0%
!! AAGTATAGATTCAGTTATAT+TGG - chr3_3:84340616-84340635 None:intergenic 20.0%
!! AAGTTTCAAAACTAAAATGT+TGG - chr3_3:84341263-84341282 None:intergenic 20.0%
!!! CAATTAATTTTTCACTTAGT+TGG + chr3_3:84341401-84341420 Msa0479370:intron 20.0%
!!! AAGCTTTTAATAATTTTTGC+AGG + chr3_3:84342311-84342330 Msa0479370:intron 20.0%
!!! ATTTTATGTTATTTTAGAGG+AGG + chr3_3:84342661-84342680 Msa0479370:intron 20.0%
!! AAGATTAAATAAAGAACACT+TGG - chr3_3:84343498-84343517 None:intergenic 20.0%
! AGAAGTGATGAATTGATTAT+AGG - chr3_3:84337776-84337795 None:intergenic 25.0%
! TATAATCAATTCATCACTTC+TGG + chr3_3:84337775-84337794 Msa0479370:five_prime_UTR 25.0%
!!! TTGAACATCAGTTTTGATTT+TGG - chr3_3:84337976-84337995 None:intergenic 25.0%
! AGAAGAGAGAAATAACTATT+GGG + chr3_3:84338363-84338382 Msa0479370:CDS 25.0%
! TTAGTTCCTAATGCAAAATA+GGG - chr3_3:84338641-84338660 None:intergenic 25.0%
!! TTTAGTTCCTAATGCAAAAT+AGG - chr3_3:84338642-84338661 None:intergenic 25.0%
! AACAAAAGCAATTTACAAAC+AGG - chr3_3:84338885-84338904 None:intergenic 25.0%
! AAATAGGATGGTTGTTAAAT+TGG + chr3_3:84339001-84339020 Msa0479370:three_prime_UTR 25.0%
!!! ATTTTTAATTCCTTCAATGC+TGG - chr3_3:84339036-84339055 None:intergenic 25.0%
!! CTTTTTAATCCCTTAATGTT+CGG - chr3_3:84339333-84339352 None:intergenic 25.0%
! CATTAAGGGATTAAAAAGAA+AGG + chr3_3:84339335-84339354 Msa0479370:three_prime_UTR 25.0%
!!! AACCAATGATCCTTTTTTTT+TGG + chr3_3:84339907-84339926 Msa0479370:intron 25.0%
!! TAAGTTCTGATTAAAATGGT+TGG + chr3_3:84340201-84340220 Msa0479370:intron 25.0%
!! AAGTTCTGATTAAAATGGTT+GGG + chr3_3:84340202-84340221 Msa0479370:intron 25.0%
!!! TTCATTTTAATGGAAGTTTG+TGG + chr3_3:84340486-84340505 Msa0479370:intron 25.0%
! TCAGTATTTATTTGGAAAAG+AGG + chr3_3:84341663-84341682 Msa0479370:three_prime_UTR 25.0%
! CAGTATTTATTTGGAAAAGA+GGG + chr3_3:84341664-84341683 Msa0479370:three_prime_UTR 25.0%
! TTGATATGTTGTTCTTATCT+AGG + chr3_3:84341719-84341738 Msa0479370:three_prime_UTR 25.0%
! CCATTATAGAATTCAGATTT+CGG - chr3_3:84341925-84341944 None:intergenic 25.0%
! CGAAATCTGAATTCTATAAT+GGG + chr3_3:84341923-84341942 Msa0479370:three_prime_UTR 25.0%
! ATATAATCAAGAAGATTCCT+TGG + chr3_3:84341981-84342000 Msa0479370:three_prime_UTR 25.0%
! CAAAGCTGAAATTGAAAATA+AGG + chr3_3:84342062-84342081 Msa0479370:three_prime_UTR 25.0%
! ATTGATCAAATACAACATAG+CGG - chr3_3:84342286-84342305 None:intergenic 25.0%
!! AATTTTCCTTTCACAAAACA+AGG + chr3_3:84342414-84342433 Msa0479370:three_prime_UTR 25.0%
! AGTAACCTAAACTGTATTTA+AGG - chr3_3:84342638-84342657 None:intergenic 25.0%
!! AAACTGAGCTTCTTTTTAAT+AGG + chr3_3:84343367-84343386 Msa0479370:three_prime_UTR 25.0%
! ATTAAATAAAGAACACTTGG+AGG - chr3_3:84343495-84343514 None:intergenic 25.0%
!! AATCTTATGTTCTGATTTGA+TGG + chr3_3:84343512-84343531 Msa0479370:three_prime_UTR 25.0%
! ATCATGAAATTGAGATGTAT+TGG + chr3_3:84343661-84343680 Msa0479370:three_prime_UTR 25.0%
CAAAATGCTTTCAATTCCTT+CGG + chr3_3:84337802-84337821 Msa0479370:five_prime_UTR 30.0%
! ATGTTCATTTTCTCCTTTCT+TGG - chr3_3:84337860-84337879 None:intergenic 30.0%
TGAACATTACTGTTATGCTA+CGG + chr3_3:84337873-84337892 Msa0479370:five_prime_UTR 30.0%
!!! ACTTTTTTACTTCTGCAACT+TGG - chr3_3:84338194-84338213 None:intergenic 30.0%
GAGATATAGATAAACACGTA+TGG + chr3_3:84338218-84338237 Msa0479370:intron 30.0%
TACATATTCCGAAGAAAGTT+CGG + chr3_3:84338288-84338307 Msa0479370:CDS 30.0%
TAAATTCAAGACAGGAAAAG+AGG + chr3_3:84338316-84338335 Msa0479370:CDS 30.0%
GAGAAGAGAGAAATAACTAT+TGG + chr3_3:84338362-84338381 Msa0479370:CDS 30.0%
AACAAAATTTATGCAGGGAA+CGG - chr3_3:84338608-84338627 None:intergenic 30.0%
! TTTAGTCCCTATTTTGCATT+AGG + chr3_3:84338632-84338651 Msa0479370:intron 30.0%
! GATTTTGTAAGTTTAATCCG+TGG - chr3_3:84338723-84338742 None:intergenic 30.0%
CACTGAATTAAAATGTAGAC+TGG - chr3_3:84338777-84338796 None:intergenic 30.0%
! AAGAGCAAATATTTCTGAAG+AGG + chr3_3:84338922-84338941 Msa0479370:CDS 30.0%
! AAATATTTCTGAAGAGGCTT+TGG + chr3_3:84338928-84338947 Msa0479370:CDS 30.0%
! AATATTTCTGAAGAGGCTTT+GGG + chr3_3:84338929-84338948 Msa0479370:CDS 30.0%
!!! TTTTTTGTCTGTTGAGATTC+CGG + chr3_3:84339077-84339096 Msa0479370:three_prime_UTR 30.0%
GCATAAAATAGTATCCATAC+CGG - chr3_3:84339099-84339118 None:intergenic 30.0%
AACAATCTCTTTATCTGAAG+TGG - chr3_3:84339121-84339140 None:intergenic 30.0%
! ATTGTTGATCTCATCGATTA+TGG + chr3_3:84339135-84339154 Msa0479370:three_prime_UTR 30.0%
ACGAAATGTATCACATTTGT+CGG - chr3_3:84339211-84339230 None:intergenic 30.0%
ACAAATGTGATACATTTCGT+AGG + chr3_3:84339211-84339230 Msa0479370:three_prime_UTR 30.0%
CAAATGTGATACATTTCGTA+GGG + chr3_3:84339212-84339231 Msa0479370:three_prime_UTR 30.0%
AAATGTGATACATTTCGTAG+GGG + chr3_3:84339213-84339232 Msa0479370:three_prime_UTR 30.0%
TATGTCTTTCCGAACATTAA+GGG + chr3_3:84339321-84339340 Msa0479370:three_prime_UTR 30.0%
GATGCTTCCATTATTACAAA+TGG + chr3_3:84339582-84339601 Msa0479370:three_prime_UTR 30.0%
TTGGAGACCATTTGTAATAA+TGG - chr3_3:84339592-84339611 None:intergenic 30.0%
!! ATCCTTTTAAAAGGATGGAA+AGG + chr3_3:84339640-84339659 Msa0479370:three_prime_UTR 30.0%
! ATCCTTTCCATCCTTTTAAA+AGG - chr3_3:84339645-84339664 None:intergenic 30.0%
AACTGTAGAAAGACTAAACT+AGG - chr3_3:84339800-84339819 None:intergenic 30.0%
! TAGTCTTTCTACAGTTTTTG+TGG + chr3_3:84339804-84339823 Msa0479370:intron 30.0%
! GGATCATTGGTTATAAGATT+TGG - chr3_3:84339899-84339918 None:intergenic 30.0%
GTCCAAAAAAAAAGGATCAT+TGG - chr3_3:84339912-84339931 None:intergenic 30.0%
TGATGATAGCAATATTCCAA+GGG - chr3_3:84339983-84340002 None:intergenic 30.0%
! TTGATGATAGCAATATTCCA+AGG - chr3_3:84339984-84340003 None:intergenic 30.0%
!!! AGTTTTAAAGACCATACAGA+CGG - chr3_3:84340031-84340050 None:intergenic 30.0%
!! TGTATGGTCTTTAAAACTCA+TGG + chr3_3:84340033-84340052 Msa0479370:intron 30.0%
ATAGTCACACCAAAAAAACT+CGG - chr3_3:84340104-84340123 None:intergenic 30.0%
!!! TTTTTTTGGTGTGACTATCT+TGG + chr3_3:84340106-84340125 Msa0479370:intron 30.0%
AGCTGATACTGAAAATGAAA+TGG - chr3_3:84340138-84340157 None:intergenic 30.0%
! TTCCTATGTTGTTTGATTGT+GGG + chr3_3:84340634-84340653 Msa0479370:three_prime_UTR 30.0%
AGAATCCCTATAGTAGAAAA+AGG + chr3_3:84340876-84340895 Msa0479370:intron 30.0%
! GACAACCTTTTTCTACTATA+GGG - chr3_3:84340884-84340903 None:intergenic 30.0%
! CGTTGTATGCTATTAATTTG+AGG + chr3_3:84340903-84340922 Msa0479370:intron 30.0%
!! TTGTTCTCTATTTCTACAGA+AGG - chr3_3:84341314-84341333 None:intergenic 30.0%
AGAAATAGAGAACAACTGAA+AGG + chr3_3:84341319-84341338 Msa0479370:intron 30.0%
GAAATAGAGAACAACTGAAA+GGG + chr3_3:84341320-84341339 Msa0479370:intron 30.0%
AATAGACATGGTTAACACTA+GGG - chr3_3:84341443-84341462 None:intergenic 30.0%
AAATAGACATGGTTAACACT+AGG - chr3_3:84341444-84341463 None:intergenic 30.0%
AGTGTTAACCATGTCTATTT+AGG + chr3_3:84341444-84341463 Msa0479370:intron 30.0%
AGTAATCTGCTCAAGATTAA+AGG + chr3_3:84341550-84341569 Msa0479370:three_prime_UTR 30.0%
! AGTCAGAGCATAAATCTTTT+TGG + chr3_3:84341578-84341597 Msa0479370:three_prime_UTR 30.0%
!! AAGCATCGACTCTTAAATTT+GGG - chr3_3:84341804-84341823 None:intergenic 30.0%
!! AAAGCATCGACTCTTAAATT+TGG - chr3_3:84341805-84341824 None:intergenic 30.0%
CTGAGGATAAAATAATTGGT+GGG - chr3_3:84341830-84341849 None:intergenic 30.0%
TCTGAGGATAAAATAATTGG+TGG - chr3_3:84341831-84341850 None:intergenic 30.0%
! GTCTCTGAGGATAAAATAAT+TGG - chr3_3:84341834-84341853 None:intergenic 30.0%
CCGAAATCTGAATTCTATAA+TGG + chr3_3:84341922-84341941 Msa0479370:three_prime_UTR 30.0%
CCAAAATTAACAATGTCTTC+AGG - chr3_3:84342111-84342130 None:intergenic 30.0%
! CCTGAAGACATTGTTAATTT+TGG + chr3_3:84342108-84342127 Msa0479370:three_prime_UTR 30.0%
!!! ACAATACCTTGTTTTGTGAA+AGG - chr3_3:84342423-84342442 None:intergenic 30.0%
GCTTACCTTAAATACAGTTT+AGG + chr3_3:84342630-84342649 Msa0479370:intron 30.0%
TACAACTAGGAAGACAATAT+TGG - chr3_3:84342743-84342762 None:intergenic 30.0%
CAAAAAAAGGATCTACAACT+AGG - chr3_3:84342756-84342775 None:intergenic 30.0%
!! TCCAGACTCACTTTAATTTT+AGG + chr3_3:84342783-84342802 Msa0479370:intron 30.0%
TCCTAAAATTAAAGTGAGTC+TGG - chr3_3:84342787-84342806 None:intergenic 30.0%
GCAACTTAAAAGTGAAACTT+TGG - chr3_3:84342818-84342837 None:intergenic 30.0%
GAAAAGAACGAGTATACAAT+GGG + chr3_3:84342906-84342925 Msa0479370:three_prime_UTR 30.0%
TGAACATGTACTTATGAGTT+TGG + chr3_3:84343429-84343448 Msa0479370:three_prime_UTR 30.0%
ATACTCGTTGAAGAACATGA+TGG - chr3_3:84337728-84337747 None:intergenic 35.0%
ATCATGTTCTTCAACGAGTA+TGG + chr3_3:84337727-84337746 Msa0479370:five_prime_UTR 35.0%
! CATTTTCTCCTTTCTTGGAA+GGG - chr3_3:84337855-84337874 None:intergenic 35.0%
! TCATTTTCTCCTTTCTTGGA+AGG - chr3_3:84337856-84337875 None:intergenic 35.0%
TGTTATGCTACGGTTAAGTT+TGG + chr3_3:84337883-84337902 Msa0479370:five_prime_UTR 35.0%
! CAAAACTGATGTTCAAGTTC+AGG + chr3_3:84337980-84337999 Msa0479370:CDS 35.0%
ACTGTGTGTGTGTTAATTTC+AGG + chr3_3:84338265-84338284 Msa0479370:intron 35.0%
TTATCACTCCGAACTTTCTT+CGG - chr3_3:84338299-84338318 None:intergenic 35.0%
AGTGATTGTGAATTTGACCA+TGG + chr3_3:84338440-84338459 Msa0479370:CDS 35.0%
GGGTTTCAAATATTCCGTAT+TGG + chr3_3:84338949-84338968 Msa0479370:CDS 35.0%
TTGTATGCAACTGTCCAATA+CGG - chr3_3:84338966-84338985 None:intergenic 35.0%
AGTGACAGATGAAGAGAAAT+AGG + chr3_3:84338985-84339004 Msa0479370:exon 35.0%
ACAGATGAAGAGAAATAGGA+TGG + chr3_3:84338989-84339008 Msa0479370:exon 35.0%
TAGGATGGTTGTTAAATTGG+TGG + chr3_3:84339004-84339023 Msa0479370:three_prime_UTR 35.0%
AAATGAAGAGAAGTTGCTCA+CGG + chr3_3:84339052-84339071 Msa0479370:three_prime_UTR 35.0%
! GAATGCTGTTCTTTTCTTAG+AGG + chr3_3:84339239-84339258 Msa0479370:three_prime_UTR 35.0%
TCGGAAAGACATACAAGTTA+AGG - chr3_3:84339314-84339333 None:intergenic 35.0%
GTATGTCTTTCCGAACATTA+AGG + chr3_3:84339320-84339339 Msa0479370:three_prime_UTR 35.0%
AGGGATTAAAAAGAAAGGCA+CGG + chr3_3:84339340-84339359 Msa0479370:three_prime_UTR 35.0%
TTATACTGGACGCCAAAAAA+CGG + chr3_3:84339398-84339417 Msa0479370:three_prime_UTR 35.0%
GGGATGACTTTCAAAATAAG+AGG + chr3_3:84339427-84339446 Msa0479370:three_prime_UTR 35.0%
AAACATCTCAATCTCCATAG+AGG - chr3_3:84339542-84339561 None:intergenic 35.0%
! CATGGACACATCCTTTTAAA+AGG + chr3_3:84339631-84339650 Msa0479370:three_prime_UTR 35.0%
!! GACACATCCTTTTAAAAGGA+TGG + chr3_3:84339635-84339654 Msa0479370:three_prime_UTR 35.0%
AAAAGGATGGAAAGGATTTC+TGG + chr3_3:84339648-84339667 Msa0479370:three_prime_UTR 35.0%
!! TGGTTTGCAATGGATTAGTT+TGG - chr3_3:84339692-84339711 None:intergenic 35.0%
AACTAATCCATTGCAAACCA+TGG + chr3_3:84339692-84339711 Msa0479370:three_prime_UTR 35.0%
TGTTCTTCTTAATTCAGCCA+TGG - chr3_3:84339712-84339731 None:intergenic 35.0%
TGGCTGAATTAAGAAGAACA+AGG + chr3_3:84339712-84339731 Msa0479370:three_prime_UTR 35.0%
! TCTTTCTACAGTTTTTGTGG+TGG + chr3_3:84339807-84339826 Msa0479370:intron 35.0%
! CTTTCTACAGTTTTTGTGGT+GGG + chr3_3:84339808-84339827 Msa0479370:intron 35.0%
GATGATAGCAATATTCCAAG+GGG - chr3_3:84339982-84340001 None:intergenic 35.0%
ATCTCTTCATTAGTCATGAC+TGG + chr3_3:84340249-84340268 Msa0479370:intron 35.0%
TTATAAGTCCCAACCTTTAC+AGG + chr3_3:84340285-84340304 Msa0479370:intron 35.0%
TATAAGTCCCAACCTTTACA+GGG + chr3_3:84340286-84340305 Msa0479370:intron 35.0%
AATCAATCCCTGTAAAGGTT+GGG - chr3_3:84340296-84340315 None:intergenic 35.0%
AAATCAATCCCTGTAAAGGT+TGG - chr3_3:84340297-84340316 None:intergenic 35.0%
AACCTTTACAGGGATTGATT+TGG + chr3_3:84340296-84340315 Msa0479370:intron 35.0%
AACCAAATCAATCCCTGTAA+AGG - chr3_3:84340301-84340320 None:intergenic 35.0%
TATACTTGTTCTCCAGTGAA+GGG + chr3_3:84340348-84340367 Msa0479370:intron 35.0%
!! CTGTGGACTAGTAAAGAATT+TGG + chr3_3:84340569-84340588 Msa0479370:three_prime_UTR 35.0%
! CTTCCTATGTTGTTTGATTG+TGG + chr3_3:84340633-84340652 Msa0479370:three_prime_UTR 35.0%
ATCCCACAATCAAACAACAT+AGG - chr3_3:84340639-84340658 None:intergenic 35.0%
! TATGTTGTTTGATTGTGGGA+TGG + chr3_3:84340638-84340657 Msa0479370:three_prime_UTR 35.0%
!!! GTCTTTTTTTCCAAGAACAG+TGG - chr3_3:84340685-84340704 None:intergenic 35.0%
AAAGACAGAGTCTTCCTAAA+TGG + chr3_3:84340699-84340718 Msa0479370:three_prime_UTR 35.0%
GAAAAATGAATTGCCTCATC+AGG + chr3_3:84340785-84340804 Msa0479370:three_prime_UTR 35.0%
GAATAAAAGTGAACCTGATG+AGG - chr3_3:84340801-84340820 None:intergenic 35.0%
! CGACAACCTTTTTCTACTAT+AGG - chr3_3:84340885-84340904 None:intergenic 35.0%
! TGTGAACCAATTTTTGATGG+AGG - chr3_3:84341124-84341143 None:intergenic 35.0%
! GTGTGTGAACCAATTTTTGA+TGG - chr3_3:84341127-84341146 None:intergenic 35.0%
ATAGACATGGTTAACACTAG+GGG - chr3_3:84341442-84341461 None:intergenic 35.0%
GTTAACCATGTCTATTTAGG+TGG + chr3_3:84341447-84341466 Msa0479370:intron 35.0%
GATTTCCACCTAAATAGACA+TGG - chr3_3:84341455-84341474 None:intergenic 35.0%
AGATTACTAACCACTAAGAG+TGG - chr3_3:84341538-84341557 None:intergenic 35.0%
AATCACACCACTATGCAATA+GGG - chr3_3:84341605-84341624 None:intergenic 35.0%
! TGGGGTGTTCAGTATTTATT+TGG + chr3_3:84341655-84341674 Msa0479370:three_prime_UTR 35.0%
! GATGTTGTTGTCTGAAATAG+TGG - chr3_3:84341856-84341875 None:intergenic 35.0%
ACAACAACATCTGATTGTCT+TGG + chr3_3:84341865-84341884 Msa0479370:three_prime_UTR 35.0%
TTACTTTGACCTAGTAATCC+AGG - chr3_3:84341895-84341914 None:intergenic 35.0%
AAGGCTAAAACACACTGAAA+GGG + chr3_3:84342145-84342164 Msa0479370:three_prime_UTR 35.0%
!! CACAAAACAAGGTATTGTTC+CGG + chr3_3:84342425-84342444 Msa0479370:three_prime_UTR 35.0%
TGCGGATTTATGACAATATC+CGG - chr3_3:84342447-84342466 None:intergenic 35.0%
! TCTGGAGCAAATGCAAAAAA+AGG - chr3_3:84342769-84342788 None:intergenic 35.0%
GGAAAAGAACGAGTATACAA+TGG + chr3_3:84342905-84342924 Msa0479370:three_prime_UTR 35.0%
GATTCACAGAATCAGCAATA+GGG - chr3_3:84343258-84343277 None:intergenic 35.0%
TGATTCACAGAATCAGCAAT+AGG - chr3_3:84343259-84343278 None:intergenic 35.0%
GACAATAACTTAGCTCCATA+TGG - chr3_3:84343309-84343328 None:intergenic 35.0%
ATGTTCAAAAGTCTAGTCTG+GGG - chr3_3:84343416-84343435 None:intergenic 35.0%
CATGTTCAAAAGTCTAGTCT+GGG - chr3_3:84343417-84343436 None:intergenic 35.0%
ACATGTTCAAAAGTCTAGTC+TGG - chr3_3:84343418-84343437 None:intergenic 35.0%
GCATGTACAAATGCAAACTA+AGG + chr3_3:84343537-84343556 Msa0479370:three_prime_UTR 35.0%
! CAATATCCATTTTGTCTCAG+CGG + chr3_3:84343592-84343611 Msa0479370:three_prime_UTR 35.0%
CGTATGGTGTCTTTGATGTT+CGG + chr3_3:84338234-84338253 Msa0479370:intron 40.0%
CGGAGTGATAAATTCAAGAC+AGG + chr3_3:84338308-84338327 Msa0479370:CDS 40.0%
GATTGTGAATTTGACCATGG+AGG + chr3_3:84338443-84338462 Msa0479370:CDS 40.0%
! TGATCTCATCGATTATGGAG+AGG + chr3_3:84339140-84339159 Msa0479370:three_prime_UTR 40.0%
! GATCTCATCGATTATGGAGA+GGG + chr3_3:84339141-84339160 Msa0479370:three_prime_UTR 40.0%
TTTCTTAGAGGAACGTGTCA+AGG + chr3_3:84339251-84339270 Msa0479370:three_prime_UTR 40.0%
TTCTTAGAGGAACGTGTCAA+GGG + chr3_3:84339252-84339271 Msa0479370:three_prime_UTR 40.0%
CACTCGTCAATAGATTCTGA+GGG - chr3_3:84339291-84339310 None:intergenic 40.0%
!! GTTCTCTTACTGGCTTATAC+TGG + chr3_3:84339384-84339403 Msa0479370:three_prime_UTR 40.0%
ACGCCAAAAAACGGATAACA+GGG + chr3_3:84339407-84339426 Msa0479370:three_prime_UTR 40.0%
!!! CATCCCTGTTATCCGTTTTT+TGG - chr3_3:84339413-84339432 None:intergenic 40.0%
!! AATAAGAGGCTTGAGTTGAC+TGG + chr3_3:84339441-84339460 Msa0479370:three_prime_UTR 40.0%
! AATTCAGCCATGGTTTGCAA+TGG - chr3_3:84339702-84339721 None:intergenic 40.0%
AAGGCAACAAGTTCAGTACA+CGG + chr3_3:84339731-84339750 Msa0479370:three_prime_UTR 40.0%
TAACGTTCATTCAGTCAGCT+AGG - chr3_3:84339861-84339880 None:intergenic 40.0%
!!! GACTAGATGCCGAGTTTTTT+TGG + chr3_3:84340092-84340111 Msa0479370:intron 40.0%
!! ACAGGGATTGATTTGGTTTC+TGG + chr3_3:84340303-84340322 Msa0479370:intron 40.0%
GTATACTTGTTCTCCAGTGA+AGG + chr3_3:84340347-84340366 Msa0479370:intron 40.0%
ACAAACATCAATCCCTTCAC+TGG - chr3_3:84340363-84340382 None:intergenic 40.0%
AGTGAAGGGATTGATGTTTG+TGG + chr3_3:84340362-84340381 Msa0479370:intron 40.0%
TAATGGAAGTTTGTGGTTGC+AGG + chr3_3:84340493-84340512 Msa0479370:intron 40.0%
GATGATACTACCACTGTTCT+TGG + chr3_3:84340672-84340691 Msa0479370:three_prime_UTR 40.0%
AGTCTTCCTAAATGGAGACT+GGG + chr3_3:84340707-84340726 Msa0479370:three_prime_UTR 40.0%
CAGAGCTACGAAATAGAAGA+CGG + chr3_3:84340763-84340782 Msa0479370:three_prime_UTR 40.0%
TACTATAGGGATTCTCTCCA+TGG - chr3_3:84340871-84340890 None:intergenic 40.0%
ACAGTCGTGTATTAAGCATC+TGG + chr3_3:84340988-84341007 Msa0479370:intron 40.0%
! ACCAATTTTTGATGGAGGAG+CGG - chr3_3:84341119-84341138 None:intergenic 40.0%
TACTAACCACTAAGAGTGGA+CGG - chr3_3:84341534-84341553 None:intergenic 40.0%
! TTTTGGTCCCTATTGCATAG+TGG + chr3_3:84341595-84341614 Msa0479370:three_prime_UTR 40.0%
CAATCACACCACTATGCAAT+AGG - chr3_3:84341606-84341625 None:intergenic 40.0%
TGTGATTGCTGAAGAAGAAG+AGG + chr3_3:84341618-84341637 Msa0479370:three_prime_UTR 40.0%
AAGCATTCTTCACAGGCTAT+TGG + chr3_3:84341763-84341782 Msa0479370:three_prime_UTR 40.0%
TCTGATTGTCTTGGATAACC+TGG + chr3_3:84341874-84341893 Msa0479370:three_prime_UTR 40.0%
CTTGGATAACCTGGATTACT+AGG + chr3_3:84341883-84341902 Msa0479370:three_prime_UTR 40.0%
! TAATGGGCAGAATGCAATTG+TGG + chr3_3:84341939-84341958 Msa0479370:three_prime_UTR 40.0%
TGTTCAGATCTGAGCACATA+AGG + chr3_3:84342034-84342053 Msa0479370:three_prime_UTR 40.0%
! TTTGGAAAGACAGAGCATCA+AGG + chr3_3:84342126-84342145 Msa0479370:three_prime_UTR 40.0%
CAAGGCTAAAACACACTGAA+AGG + chr3_3:84342144-84342163 Msa0479370:three_prime_UTR 40.0%
AGGCTAAAACACACTGAAAG+GGG + chr3_3:84342146-84342165 Msa0479370:three_prime_UTR 40.0%
TGAAAGGGGACATGTTCAAA+AGG + chr3_3:84342160-84342179 Msa0479370:three_prime_UTR 40.0%
!! TGCTGTTGTTTCGTTAAGAC+AGG + chr3_3:84342217-84342236 Msa0479370:three_prime_UTR 40.0%
GAGAACTTATCTCCAAGAAC+TGG - chr3_3:84342345-84342364 None:intergenic 40.0%
GATAAGTTCTCCAGTATGCA+CGG + chr3_3:84342354-84342373 Msa0479370:three_prime_UTR 40.0%
!!! GAAGGGTGTTTTAGGATTTC+TGG + chr3_3:84342380-84342399 Msa0479370:three_prime_UTR 40.0%
!! TTTAGGATTTCTGGAGTCTC+AGG + chr3_3:84342389-84342408 Msa0479370:three_prime_UTR 40.0%
! CTAGAAGCTGGTTTAGGAAA+GGG + chr3_3:84342505-84342524 Msa0479370:three_prime_UTR 40.0%
TGAAACATTACCTGTGAAGC+TGG - chr3_3:84342600-84342619 None:intergenic 40.0%
GTCATGTACGGAACATAAAC+CGG - chr3_3:84342864-84342883 None:intergenic 40.0%
AAATCCAGCTCTGTCATGTA+CGG - chr3_3:84342876-84342895 None:intergenic 40.0%
!! ACAGAGCTGGATTTTCAAGA+TGG + chr3_3:84342882-84342901 Msa0479370:intron 40.0%
!! CAGAGCTGGATTTTCAAGAT+GGG + chr3_3:84342883-84342902 Msa0479370:intron 40.0%
!! AGAGCTGGATTTTCAAGATG+GGG + chr3_3:84342884-84342903 Msa0479370:intron 40.0%
AAGAACGAGTATACAATGGG+AGG + chr3_3:84342909-84342928 Msa0479370:three_prime_UTR 40.0%
CAGTGTTCCTGAACTTTACT+TGG - chr3_3:84343016-84343035 None:intergenic 40.0%
CAAGTAAAGTTCAGGAACAC+TGG + chr3_3:84343014-84343033 Msa0479370:three_prime_UTR 40.0%
!! CGATTTGGAGGTATCAAGTT+TGG + chr3_3:84343080-84343099 Msa0479370:three_prime_UTR 40.0%
! AGGTATCAAGTTTGGTGAGA+TGG + chr3_3:84343088-84343107 Msa0479370:three_prime_UTR 40.0%
! TGTATCTGAGACGAATCACT+CGG - chr3_3:84343171-84343190 None:intergenic 40.0%
!! ATTTTTCGACCACCAGATAC+CGG - chr3_3:84343228-84343247 None:intergenic 40.0%
TGGAGCTAAGTTATTGTCTC+AGG + chr3_3:84343311-84343330 Msa0479370:three_prime_UTR 40.0%
! GGTTTGTTTGTTGAGCACTA+CGG + chr3_3:84343682-84343701 Msa0479370:three_prime_UTR 40.0%
CGTAACTGTAAGCTTTCCGA+AGG - chr3_3:84337821-84337840 None:intergenic 45.0%
TTCTTGGAAGGGTCAAAACC+AGG - chr3_3:84337844-84337863 None:intergenic 45.0%
!! GGTTTTGACCCTTCCAAGAA+AGG + chr3_3:84337844-84337863 Msa0479370:five_prime_UTR 45.0%
TATTGGGAGACTGCCTGTTA+TGG + chr3_3:84338379-84338398 Msa0479370:CDS 45.0%
! AGACCTGACTTGACCATAAC+AGG - chr3_3:84338395-84338414 None:intergenic 45.0%
TGATCAGAAAGTAGCCTCCA+TGG - chr3_3:84338460-84338479 None:intergenic 45.0%
! TGGAGGCTACTTTCTGATCA+AGG + chr3_3:84338460-84338479 Msa0479370:CDS 45.0%
! GGAGGCTACTTTCTGATCAA+GGG + chr3_3:84338461-84338480 Msa0479370:CDS 45.0%
GGAACGGCTGTGAATTGTAT+AGG - chr3_3:84338592-84338611 None:intergenic 45.0%
! GTGGAGAATTCCAGCATTGA+AGG + chr3_3:84339023-84339042 Msa0479370:three_prime_UTR 45.0%
TGTCTGTTGAGATTCCGGTA+TGG + chr3_3:84339082-84339101 Msa0479370:three_prime_UTR 45.0%
ATCGATTATGGAGAGGGAGA+TGG + chr3_3:84339147-84339166 Msa0479370:three_prime_UTR 45.0%
!! ACATTTGTCGGCTTCACGAA+TGG - chr3_3:84339199-84339218 None:intergenic 45.0%
! TCGTCAATAGATTCTGAGGG+CGG - chr3_3:84339288-84339307 None:intergenic 45.0%
GCACTCGTCAATAGATTCTG+AGG - chr3_3:84339292-84339311 None:intergenic 45.0%
! AAAAAGAAAGGCACGGTACC+TGG + chr3_3:84339347-84339366 Msa0479370:three_prime_UTR 45.0%
CATGGTGAAGGTTCTCTTAC+TGG + chr3_3:84339374-84339393 Msa0479370:three_prime_UTR 45.0%
GACGCCAAAAAACGGATAAC+AGG + chr3_3:84339406-84339425 Msa0479370:three_prime_UTR 45.0%
AAGTGCACTTTGCACATGCT+CGG + chr3_3:84339487-84339506 Msa0479370:three_prime_UTR 45.0%
!! CTCCAAAGAGTGTTCTCTAC+TGG + chr3_3:84339606-84339625 Msa0479370:three_prime_UTR 45.0%
CTCCAGTAGAGAACACTCTT+TGG - chr3_3:84339611-84339630 None:intergenic 45.0%
AGGCAACAAGTTCAGTACAC+GGG + chr3_3:84339732-84339751 Msa0479370:three_prime_UTR 45.0%
ACAAGTTCAGTACACGGGAA+AGG + chr3_3:84339737-84339756 Msa0479370:three_prime_UTR 45.0%
TTCAGTACACGGGAAAGGTT+GGG + chr3_3:84339742-84339761 Msa0479370:three_prime_UTR 45.0%
CATGTAAAGTGAAGTCCCCT+TGG + chr3_3:84339964-84339983 Msa0479370:intron 45.0%
!! ACGGTAGACTGGTTTAACTC+TGG - chr3_3:84340012-84340031 None:intergenic 45.0%
AAACCAGTCTACCGTCTGTA+TGG + chr3_3:84340017-84340036 Msa0479370:intron 45.0%
! TCTGTAAAGTGCCCTCATTG+AGG + chr3_3:84340158-84340177 Msa0479370:intron 45.0%
! CTGTAAAGTGCCCTCATTGA+GGG + chr3_3:84340159-84340178 Msa0479370:intron 45.0%
CAGATACATGCCCTCAATGA+GGG - chr3_3:84340172-84340191 None:intergenic 45.0%
TCAGATACATGCCCTCAATG+AGG - chr3_3:84340173-84340192 None:intergenic 45.0%
! TCCACAGTTTTCACCAACTG+GGG - chr3_3:84340556-84340575 None:intergenic 45.0%
! GTCCACAGTTTTCACCAACT+GGG - chr3_3:84340557-84340576 None:intergenic 45.0%
! AGTCCACAGTTTTCACCAAC+TGG - chr3_3:84340558-84340577 None:intergenic 45.0%
GTAAAGAATTTGGCTGTCGC+AGG + chr3_3:84340579-84340598 Msa0479370:three_prime_UTR 45.0%
GAGTCTTCCTAAATGGAGAC+TGG + chr3_3:84340706-84340725 Msa0479370:three_prime_UTR 45.0%
TTCCTAAATGGAGACTGGGT+TGG + chr3_3:84340711-84340730 Msa0479370:three_prime_UTR 45.0%
! TTTCGTAGCTCTGCCACAAA+CGG - chr3_3:84340756-84340775 None:intergenic 45.0%
CTTGCCTTTCATTTCAGCCA+TGG + chr3_3:84340851-84340870 Msa0479370:intron 45.0%
CTCTCCATGGCTGAAATGAA+AGG - chr3_3:84340858-84340877 None:intergenic 45.0%
GTATCATCTGCTCTGCAAGT+TGG - chr3_3:84340953-84340972 None:intergenic 45.0%
! CCAATTTTTGATGGAGGAGC+GGG - chr3_3:84341118-84341137 None:intergenic 45.0%
ATGCGCATATTATCTGACGC+AGG + chr3_3:84341499-84341518 Msa0479370:three_prime_UTR 45.0%
GCATATTATCTGACGCAGGA+AGG + chr3_3:84341503-84341522 Msa0479370:three_prime_UTR 45.0%
AAGAGGACTTCAAGACTGCT+TGG + chr3_3:84341635-84341654 Msa0479370:three_prime_UTR 45.0%
AGAGGACTTCAAGACTGCTT+GGG + chr3_3:84341636-84341655 Msa0479370:three_prime_UTR 45.0%
!! GTGAAGAATGCTTCTGGGAT+TGG - chr3_3:84341756-84341775 None:intergenic 45.0%
!! ATCCCAGAAGCATTCTTCAC+AGG + chr3_3:84341756-84341775 Msa0479370:three_prime_UTR 45.0%
AGCCTGTGAAGAATGCTTCT+GGG - chr3_3:84341761-84341780 None:intergenic 45.0%
TAGCCTGTGAAGAATGCTTC+TGG - chr3_3:84341762-84341781 None:intergenic 45.0%
! GTCTGAAATAGTGGTCTCTG+AGG - chr3_3:84341847-84341866 None:intergenic 45.0%
CAGGTTAGAAGTCCAGTTCT+TGG + chr3_3:84342330-84342349 Msa0479370:intron 45.0%
! CAACTCCTAGAAGCTGGTTT+AGG + chr3_3:84342499-84342518 Msa0479370:three_prime_UTR 45.0%
CCTTTCCTAAACCAGCTTCT+AGG - chr3_3:84342507-84342526 None:intergenic 45.0%
! CCTAGAAGCTGGTTTAGGAA+AGG + chr3_3:84342504-84342523 Msa0479370:three_prime_UTR 45.0%
!! GGAAAGGGTATTGCTTGTGT+TGG + chr3_3:84342520-84342539 Msa0479370:three_prime_UTR 45.0%
CTCAGTACAACGACAGAACA+TGG - chr3_3:84342840-84342859 None:intergenic 45.0%
TTCTGTCGTTGTACTGAGTC+CGG + chr3_3:84342842-84342861 Msa0479370:intron 45.0%
GTCCGCTCGCTCATATTTAT+GGG + chr3_3:84342951-84342970 Msa0479370:three_prime_UTR 45.0%
TTACTTGGTCCTCTGACATG+TGG - chr3_3:84343001-84343020 None:intergenic 45.0%
CAGAGGACCAAGTAAAGTTC+AGG + chr3_3:84343006-84343025 Msa0479370:three_prime_UTR 45.0%
TGCAAATGTGATCTTGCGAC+CGG + chr3_3:84343206-84343225 Msa0479370:three_prime_UTR 45.0%
TCTGGTGGTCGAAAAATACG+AGG + chr3_3:84343231-84343250 Msa0479370:three_prime_UTR 45.0%
TGAATCAGCCGATGACATTG+TGG + chr3_3:84343272-84343291 Msa0479370:three_prime_UTR 45.0%
GGAAAGCTTACAGTTACGCC+TGG + chr3_3:84337823-84337842 Msa0479370:five_prime_UTR 50.0%
! CTCTGAAGACGAGCATGTCT+AGG - chr3_3:84337939-84337958 None:intergenic 50.0%
CTGCCTGTTATGGTCAAGTC+AGG + chr3_3:84338389-84338408 Msa0479370:CDS 50.0%
!! TCTGATCAAGGGTGCTGAGA+AGG + chr3_3:84338472-84338491 Msa0479370:CDS 50.0%
GTACCTGGCATACATGGTGA+AGG + chr3_3:84339362-84339381 Msa0479370:three_prime_UTR 50.0%
GAACCTTCACCATGTATGCC+AGG - chr3_3:84339368-84339387 None:intergenic 50.0%
GCTCTGCAAAGAGACCTCTA+TGG + chr3_3:84339525-84339544 Msa0479370:three_prime_UTR 50.0%
GAGTGTTCTCTACTGGAGCA+TGG + chr3_3:84339613-84339632 Msa0479370:three_prime_UTR 50.0%
!! GATGGAAAGGATTTCTGGCG+TGG + chr3_3:84339653-84339672 Msa0479370:three_prime_UTR 50.0%
GTTCAGTACACGGGAAAGGT+TGG + chr3_3:84339741-84339760 Msa0479370:three_prime_UTR 50.0%
TCAGTACACGGGAAAGGTTG+GGG + chr3_3:84339743-84339762 Msa0479370:three_prime_UTR 50.0%
AGACCATACAGACGGTAGAC+TGG - chr3_3:84340023-84340042 None:intergenic 50.0%
ACTCGGCATCTAGTCTACAC+AGG - chr3_3:84340087-84340106 None:intergenic 50.0%
TTGCAGGCATCCTTCTCACT+GGG + chr3_3:84340509-84340528 Msa0479370:intron 50.0%
CAAACCTTACCCCAGTGAGA+AGG - chr3_3:84340522-84340541 None:intergenic 50.0%
TGTTTCCTCTCTACCCCAGT+TGG + chr3_3:84340540-84340559 Msa0479370:three_prime_UTR 50.0%
TTTCACCAACTGGGGTAGAG+AGG - chr3_3:84340548-84340567 None:intergenic 50.0%
!! ACCCCAGTTGGTGAAAACTG+TGG + chr3_3:84340552-84340571 Msa0479370:three_prime_UTR 50.0%
CTCCAACCCAGTCTCCATTT+AGG - chr3_3:84340716-84340735 None:intergenic 50.0%
TTCAGATTCCGCACCGTTTG+TGG + chr3_3:84340740-84340759 Msa0479370:three_prime_UTR 50.0%
CCCGCTCCTCCATCAAAAAT+TGG + chr3_3:84341115-84341134 Msa0479370:intron 50.0%
GATTCTCCGTCCACTCTTAG+TGG + chr3_3:84341525-84341544 Msa0479370:three_prime_UTR 50.0%
GAGGACTTCAAGACTGCTTG+GGG + chr3_3:84341637-84341656 Msa0479370:three_prime_UTR 50.0%
GTGGCTGTCAATGTGCATCT+TGG + chr3_3:84341958-84341977 Msa0479370:three_prime_UTR 50.0%
! AGAAGCGCAGTTCATCACCA+AGG - chr3_3:84342001-84342020 None:intergenic 50.0%
TGTGCTGTCCTCGAATGATG+AGG + chr3_3:84342184-84342203 Msa0479370:three_prime_UTR 50.0%
GTGCTGTCCTCGAATGATGA+GGG + chr3_3:84342185-84342204 Msa0479370:three_prime_UTR 50.0%
TGCTGTCCTCGAATGATGAG+GGG + chr3_3:84342186-84342205 Msa0479370:three_prime_UTR 50.0%
GTTCTTCCCCTCATCATTCG+AGG - chr3_3:84342195-84342214 None:intergenic 50.0%
TCCAGTATGCACGGACAGAA+GGG + chr3_3:84342363-84342382 Msa0479370:three_prime_UTR 50.0%
!!! CACGGACAGAAGGGTGTTTT+AGG + chr3_3:84342372-84342391 Msa0479370:three_prime_UTR 50.0%
GTGAGGGAAATGCATGCATG+CGG - chr3_3:84342465-84342484 None:intergenic 50.0%
TTTCCCTCACGACAAACTCC+TGG + chr3_3:84342475-84342494 Msa0479370:three_prime_UTR 50.0%
TGACCAGGAGTTTGTCGTGA+GGG - chr3_3:84342481-84342500 None:intergenic 50.0%
TTGACCAGGAGTTTGTCGTG+AGG - chr3_3:84342482-84342501 None:intergenic 50.0%
TCGACAGAGGAAGTGGAGAA+AGG - chr3_3:84342565-84342584 None:intergenic 50.0%
TGTTCCGTACATGACAGAGC+TGG + chr3_3:84342869-84342888 Msa0479370:intron 50.0%
CGAGTATACAATGGGAGGAC+TGG + chr3_3:84342914-84342933 Msa0479370:three_prime_UTR 50.0%
GGTCCGCTCGCTCATATTTA+TGG + chr3_3:84342950-84342969 Msa0479370:three_prime_UTR 50.0%
GGCCCATAAATATGAGCGAG+CGG - chr3_3:84342956-84342975 None:intergenic 50.0%
GCAGTCGCTGGTAGAATGTA+GGG - chr3_3:84342977-84342996 None:intergenic 50.0%
TGCAGTCGCTGGTAGAATGT+AGG - chr3_3:84342978-84342997 None:intergenic 50.0%
AATCGCTTCCTGTCAGCAAC+AGG - chr3_3:84343065-84343084 None:intergenic 50.0%
GTTGCTGACAGGAAGCGATT+TGG + chr3_3:84343065-84343084 Msa0479370:three_prime_UTR 50.0%
CGTGATTGCCTGATAGCTCA+TGG + chr3_3:84343113-84343132 Msa0479370:three_prime_UTR 50.0%
CTGATGCACCATGAGCTATC+AGG - chr3_3:84343124-84343143 None:intergenic 50.0%
!! GAAGAGGCGCTCATACAAGT+TGG - chr3_3:84343147-84343166 None:intergenic 50.0%
! AGACGAATCACTCGGTGAAG+AGG - chr3_3:84343163-84343182 None:intergenic 50.0%
ATCAGCCGATGACATTGTGG+TGG + chr3_3:84343275-84343294 Msa0479370:three_prime_UTR 50.0%
ACTCGCCACCACAATGTCAT+CGG - chr3_3:84343283-84343302 None:intergenic 50.0%
TCTCAGGAGCTGTTCAGCAT+GGG + chr3_3:84343327-84343346 Msa0479370:three_prime_UTR 50.0%
!! GGGAAAGCATTAGAGTGGAG+AGG - chr3_3:84343396-84343415 None:intergenic 50.0%
!! GTCTGGGGAAAGCATTAGAG+TGG - chr3_3:84343401-84343420 None:intergenic 50.0%
!! GAAGCACCGCTGAGACAAAA+TGG - chr3_3:84343601-84343620 None:intergenic 50.0%
TGGTCAAGTCAGGTCTCTGC+TGG + chr3_3:84338399-84338418 Msa0479370:CDS 55.0%
CACATGCTCGGAAGCGAATG+TGG + chr3_3:84339499-84339518 Msa0479370:three_prime_UTR 55.0%
TGCTCGGAAGCGAATGTGGA+AGG + chr3_3:84339503-84339522 Msa0479370:three_prime_UTR 55.0%
TCTGGCGTGGTTGCAACTCT+TGG + chr3_3:84339666-84339685 Msa0479370:three_prime_UTR 55.0%
CGGCATCTAGTCTACACAGG+TGG - chr3_3:84340084-84340103 None:intergenic 55.0%
GTTGCAGGCATCCTTCTCAC+TGG + chr3_3:84340508-84340527 Msa0479370:intron 55.0%
TGCAGGCATCCTTCTCACTG+GGG + chr3_3:84340510-84340529 Msa0479370:intron 55.0%
GCATCCTTCTCACTGGGGTA+AGG + chr3_3:84340515-84340534 Msa0479370:three_prime_UTR 55.0%
! TAGCTCTGCCACAAACGGTG+CGG - chr3_3:84340751-84340770 None:intergenic 55.0%
AACTGCGCTTCTTTGCAGCG+TGG + chr3_3:84342009-84342028 Msa0479370:three_prime_UTR 55.0%
CTCCAGTATGCACGGACAGA+AGG + chr3_3:84342362-84342381 Msa0479370:three_prime_UTR 55.0%
ACCCTTCTGTCCGTGCATAC+TGG - chr3_3:84342367-84342386 None:intergenic 55.0%
! CCAGCTTCTAGGAGTTGACC+AGG - chr3_3:84342496-84342515 None:intergenic 55.0%
CCTGGTCAACTCCTAGAAGC+TGG + chr3_3:84342493-84342512 Msa0479370:three_prime_UTR 55.0%
GATGGCTTCGACAGAGGAAG+TGG - chr3_3:84342572-84342591 None:intergenic 55.0%
GTCTGTGATGGCTTCGACAG+AGG - chr3_3:84342578-84342597 None:intergenic 55.0%
! CCTGTGAAGCTGGTCTGTGA+TGG - chr3_3:84342590-84342609 None:intergenic 55.0%
CCATCACAGACCAGCTTCAC+AGG + chr3_3:84342587-84342606 Msa0479370:three_prime_UTR 55.0%
! ACAATGGGAGGACTGGTGAC+AGG + chr3_3:84342921-84342940 Msa0479370:three_prime_UTR 55.0%
! AGGACTGGTGACAGGTGAGA+TGG + chr3_3:84342929-84342948 Msa0479370:three_prime_UTR 55.0%
! GCTGACAGGAAGCGATTTGG+AGG + chr3_3:84343068-84343087 Msa0479370:three_prime_UTR 55.0%
GTGATCTTGCGACCGGTATC+TGG + chr3_3:84343213-84343232 Msa0479370:three_prime_UTR 55.0%
ATCTTGCGACCGGTATCTGG+TGG + chr3_3:84343216-84343235 Msa0479370:three_prime_UTR 55.0%
! GTGGTGGCGAGTGTTCCATA+TGG + chr3_3:84343291-84343310 Msa0479370:three_prime_UTR 55.0%
GTCTCAGGAGCTGTTCAGCA+TGG + chr3_3:84343326-84343345 Msa0479370:three_prime_UTR 55.0%
GGCACGGTACCTGGCATACA+TGG + chr3_3:84339356-84339375 Msa0479370:three_prime_UTR 60.0%
TTGATGGAGGAGCGGGACAC+AGG - chr3_3:84341111-84341130 None:intergenic 60.0%
CTGACATGTGGTGCAGTCGC+TGG - chr3_3:84342989-84343008 None:intergenic 60.0%
GCGACTGCACCACATGTCAG+AGG + chr3_3:84342989-84343008 Msa0479370:three_prime_UTR 60.0%
GTCTGGTCAGCGGGTGAACT+GGG - chr3_3:84343040-84343059 None:intergenic 60.0%
TGTCTGGTCAGCGGGTGAAC+TGG - chr3_3:84343041-84343060 None:intergenic 60.0%
CAACAGGCTGTCTGGTCAGC+GGG - chr3_3:84343049-84343068 None:intergenic 60.0%
GCAACAGGCTGTCTGGTCAG+CGG - chr3_3:84343050-84343069 None:intergenic 60.0%
CCTGTCAGCAACAGGCTGTC+TGG - chr3_3:84343057-84343076 None:intergenic 60.0%
CCAGACAGCCTGTTGCTGAC+AGG + chr3_3:84343054-84343073 Msa0479370:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 84337699 84343706 84337699 ID=Msa0479370;Name=Msa0479370
chr3_3 mRNA 84337699 84343706 84337699 ID=Msa0479370-mRNA-1;Parent=Msa0479370;Name=Msa0479370-mRNA-1;_AED=0.03;_eAED=0.03;_QI=231|1|1|1|0.66|0.28|7|2951|119
chr3_3 exon 84337699 84338001 84337699 ID=Msa0479370-mRNA-1:exon:23903;Parent=Msa0479370-mRNA-1
chr3_3 exon 84338287 84338493 84338287 ID=Msa0479370-mRNA-1:exon:23904;Parent=Msa0479370-mRNA-1
chr3_3 exon 84338909 84339778 84338909 ID=Msa0479370-mRNA-1:exon:23905;Parent=Msa0479370-mRNA-1
chr3_3 exon 84340515 84340806 84340515 ID=Msa0479370-mRNA-1:exon:23906;Parent=Msa0479370-mRNA-1
chr3_3 exon 84341466 84342238 84341466 ID=Msa0479370-mRNA-1:exon:23907;Parent=Msa0479370-mRNA-1
chr3_3 exon 84342333 84342608 84342333 ID=Msa0479370-mRNA-1:exon:23908;Parent=Msa0479370-mRNA-1
chr3_3 exon 84342886 84343706 84342886 ID=Msa0479370-mRNA-1:exon:23909;Parent=Msa0479370-mRNA-1
chr3_3 five_prime_UTR 84337699 84337929 84337699 ID=Msa0479370-mRNA-1:five_prime_utr;Parent=Msa0479370-mRNA-1
chr3_3 CDS 84337930 84338001 84337930 ID=Msa0479370-mRNA-1:cds;Parent=Msa0479370-mRNA-1
chr3_3 CDS 84338287 84338493 84338287 ID=Msa0479370-mRNA-1:cds;Parent=Msa0479370-mRNA-1
chr3_3 CDS 84338909 84338989 84338909 ID=Msa0479370-mRNA-1:cds;Parent=Msa0479370-mRNA-1
chr3_3 three_prime_UTR 84338990 84339778 84338990 ID=Msa0479370-mRNA-1:three_prime_utr;Parent=Msa0479370-mRNA-1
chr3_3 three_prime_UTR 84340515 84340806 84340515 ID=Msa0479370-mRNA-1:three_prime_utr;Parent=Msa0479370-mRNA-1
chr3_3 three_prime_UTR 84341466 84342238 84341466 ID=Msa0479370-mRNA-1:three_prime_utr;Parent=Msa0479370-mRNA-1
chr3_3 three_prime_UTR 84342333 84342608 84342333 ID=Msa0479370-mRNA-1:three_prime_utr;Parent=Msa0479370-mRNA-1
chr3_3 three_prime_UTR 84342886 84343706 84342886 ID=Msa0479370-mRNA-1:three_prime_utr;Parent=Msa0479370-mRNA-1
Gene Sequence

>Msa0479370

ATGCTTCCTAGACATGCTCGTCTTCAGAGAATGACTTATGCTTCCAAAATCAAAACTGATGTTCAAGTTCAGGTACATATTCCGAAGAAAGTTCGGAGTGATAAATTCAAGACAGGAAAAGAGGAGTATAGAGAGATAATCATGAATGAGAAGAGAGAAATAACTATTGGGAGACTGCCTGTTATGGTCAAGTCAGGTCTCTGCTGGATGAGTGATGTTGAAAAAAGTGATTGTGAATTTGACCATGGAGGCTACTTTCTGATCAAGGGTGCTGAGAAGATTTTTATTGCACAAGAGCAAATATTTCTGAAGAGGCTTTGGGTTTCAAATATTCCGTATTGGACAGTTGCATACAAGTGA
Protein sequence

>Msa0479370

MLPRHARLQRMTYASKIKTDVQVQVHIPKKVRSDKFKTGKEEYREIIMNEKREITIGRLPVMVKSGLCWMSDVEKSDCEFDHGGYFLIKGAEKIFIAQEQIFLKRLWVSNIPYWTVAYK*