Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490990 | XP_024633609.1 | 76.923 | 156 | 11 | 1 | 213 | 343 | 371 | 526 | 1.75e-60 | 221 |
| Msa0490990 | XP_024633609.1 | 78.723 | 47 | 10 | 0 | 344 | 390 | 645 | 691 | 1.61e-11 | 79.3 |
| Msa0490990 | XP_024633609.1 | 83.838 | 198 | 20 | 2 | 33 | 218 | 1 | 198 | 6.34e-103 | 333 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490990 | sp|Q9SZL8|FRS5_ARATH | 33.155 | 187 | 107 | 5 | 46 | 215 | 42 | 227 | 2.90e-15 | 82.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490990 | A0A396ILK3 | 76.923 | 156 | 11 | 1 | 213 | 343 | 371 | 526 | 8.36e-61 | 221 |
| Msa0490990 | A0A396ILK3 | 78.723 | 47 | 10 | 0 | 344 | 390 | 645 | 691 | 7.69e-12 | 79.3 |
| Msa0490990 | A0A396ILK3 | 83.838 | 198 | 20 | 2 | 33 | 218 | 1 | 198 | 3.03e-103 | 333 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0490990 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0440530 | Msa0490990 | 0.826685 | 2.368320e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490990 | MtrunA17_Chr3g0082121 | 83.838 | 198 | 20 | 2 | 33 | 218 | 1 | 198 | 5.83e-107 | 333 |
| Msa0490990 | MtrunA17_Chr3g0082121 | 76.923 | 156 | 11 | 1 | 213 | 343 | 371 | 526 | 1.61e-64 | 221 |
| Msa0490990 | MtrunA17_Chr3g0082121 | 78.723 | 47 | 10 | 0 | 344 | 390 | 645 | 691 | 1.48e-15 | 79.3 |
| Msa0490990 | MtrunA17_Chr5g0401121 | 60.140 | 143 | 41 | 3 | 37 | 167 | 22 | 160 | 4.56e-47 | 160 |
| Msa0490990 | MtrunA17_Chr1g0164591 | 75.641 | 78 | 10 | 1 | 150 | 218 | 1 | 78 | 2.55e-30 | 120 |
| Msa0490990 | MtrunA17_Chr1g0164591 | 94.545 | 55 | 3 | 0 | 213 | 267 | 251 | 305 | 1.56e-28 | 115 |
| Msa0490990 | MtrunA17_Chr1g0149131 | 68.182 | 66 | 21 | 0 | 202 | 267 | 47 | 112 | 1.21e-23 | 95.9 |
| Msa0490990 | MtrunA17_Chr6g0458391 | 39.855 | 138 | 68 | 3 | 58 | 184 | 212 | 345 | 5.85e-21 | 96.3 |
| Msa0490990 | MtrunA17_Chr6g0458391 | 32.919 | 161 | 81 | 3 | 213 | 347 | 543 | 702 | 2.60e-16 | 82.0 |
| Msa0490990 | MtrunA17_Chr6g0458391 | 32.468 | 154 | 90 | 4 | 46 | 188 | 64 | 214 | 1.83e-12 | 69.7 |
| Msa0490990 | MtrunA17_Chr7g0258861 | 39.007 | 141 | 73 | 5 | 71 | 199 | 6 | 145 | 1.27e-18 | 86.7 |
| Msa0490990 | MtrunA17_Chr5g0448761 | 35.260 | 173 | 95 | 4 | 59 | 216 | 46 | 216 | 1.51e-16 | 82.8 |
| Msa0490990 | MtrunA17_Chr2g0324011 | 35.948 | 153 | 82 | 5 | 71 | 210 | 6 | 155 | 1.90e-16 | 82.0 |
| Msa0490990 | MtrunA17_Chr2g0324011 | 29.932 | 147 | 78 | 2 | 213 | 334 | 345 | 491 | 4.40e-13 | 71.6 |
| Msa0490990 | MtrunA17_Chr1g0203721 | 40.517 | 116 | 54 | 3 | 63 | 163 | 47 | 162 | 8.40e-16 | 80.5 |
| Msa0490990 | MtrunA17_Chr1g0203721 | 31.613 | 155 | 80 | 2 | 213 | 342 | 401 | 554 | 2.18e-14 | 75.9 |
| Msa0490990 | MtrunA17_Chr4g0033611 | 37.500 | 104 | 53 | 3 | 75 | 167 | 76 | 178 | 1.37e-12 | 67.8 |
| Msa0490990 | MtrunA17_Chr2g0329421 | 36.538 | 104 | 54 | 3 | 75 | 167 | 27 | 129 | 1.69e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490990 | AT4G38180.1 | 33.155 | 187 | 107 | 5 | 46 | 215 | 42 | 227 | 2.95e-16 | 82.0 |
| Msa0490990 | AT3G59470.3 | 35.556 | 135 | 67 | 5 | 75 | 192 | 70 | 201 | 1.51e-12 | 67.8 |
| Msa0490990 | AT3G59470.1 | 35.556 | 135 | 67 | 5 | 75 | 192 | 70 | 201 | 1.51e-12 | 67.8 |
| Msa0490990 | AT3G59470.2 | 35.556 | 135 | 67 | 5 | 75 | 192 | 82 | 213 | 1.68e-12 | 68.2 |
Find 101 sgRNAs with CRISPR-Local
Find 346 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGCATATGAGTAGCGTTTC+AGG | 0.186096 | 3_4:+12935064 | Msa0490990:CDS |
| CCAGCCATCACTAGAATTTC+TGG | 0.193410 | 3_4:-12940077 | None:intergenic |
| TGTTCCAGAAGACCATTTAT+TGG | 0.218593 | 3_4:-12940015 | None:intergenic |
| TTCTCTACACCTTCAACTAT+TGG | 0.269471 | 3_4:-12935921 | None:intergenic |
| GCATCCAATAAATGGTCTTC+TGG | 0.278325 | 3_4:+12940011 | Msa0490990:CDS |
| TTTGGTATTCGTCGAGAATA+TGG | 0.287007 | 3_4:+12936083 | Msa0490990:CDS |
| GGTGTGAATATTGTGCAAAA+TGG | 0.335090 | 3_4:+12935960 | Msa0490990:CDS |
| AATATGTATAGTAGGAGAAT+TGG | 0.336807 | 3_4:+12936059 | Msa0490990:intron |
| ATAATGTTTCTGAAGATTCA+TGG | 0.342573 | 3_4:+12937068 | Msa0490990:CDS |
| TGGAGTTTGCATCCAATAAA+TGG | 0.347044 | 3_4:+12940003 | Msa0490990:CDS |
| GTTGTAGCGGCGGATGAATC+TGG | 0.356588 | 3_4:+12936383 | Msa0490990:CDS |
| ATTTCACTTGATCGAAAGAT+TGG | 0.360362 | 3_4:+12936248 | Msa0490990:CDS |
| GTGTGAATATTGTGCAAAAT+GGG | 0.363310 | 3_4:+12935961 | Msa0490990:CDS |
| GAGAAATCGGTGAACAATAT+TGG | 0.369680 | 3_4:+12935939 | Msa0490990:CDS |
| ACGTGCATCACATCCCGTTC+TGG | 0.380300 | 3_4:-12936219 | None:intergenic |
| GTGTGGTCCTTTCGTTTAGT+AGG | 0.382378 | 3_4:-12940122 | None:intergenic |
| ATATGCGGCGGTTGGGTGTT+CGG | 0.392096 | 3_4:-12935049 | None:intergenic |
| TCTGGATGTTGGTGGGGAGC+AGG | 0.410929 | 3_4:+12937930 | Msa0490990:CDS |
| TGCCTAAATTGAAAATGAAA+AGG | 0.417192 | 3_4:+12937317 | Msa0490990:CDS |
| GGAATTTCAAGAAGAATATG+AGG | 0.425849 | 3_4:+12937390 | Msa0490990:CDS |
| ATATGTATAGTAGGAGAATT+GGG | 0.426944 | 3_4:+12936060 | Msa0490990:intron |
| TTCTAGTGATGGCTGGTGAT+AGG | 0.434272 | 3_4:+12940084 | Msa0490990:CDS |
| AGTTGAAGGTGTAGAGAAAT+CGG | 0.437429 | 3_4:+12935926 | Msa0490990:CDS |
| CTCATGTCTTGACTCATAAT+CGG | 0.441200 | 3_4:-12937293 | None:intergenic |
| CTGGATGTTGGTGGGGAGCA+GGG | 0.451018 | 3_4:+12937931 | Msa0490990:CDS |
| GAAGAATATGAGGAATATCT+AGG | 0.460765 | 3_4:+12937400 | Msa0490990:CDS |
| TAAAATAATTGATGATATGT+TGG | 0.463062 | 3_4:+12937819 | Msa0490990:CDS |
| CGCTACTCATATGCGGCGGT+TGG | 0.463210 | 3_4:-12935057 | None:intergenic |
| GACCACACTCGAGGAGTTTG+TGG | 0.466177 | 3_4:+12940137 | Msa0490990:CDS |
| TGCGTAAAGAATTTGAAAGA+AGG | 0.475897 | 3_4:+12937427 | Msa0490990:CDS |
| TTCCATGGACAACCCTTTCA+AGG | 0.482368 | 3_4:-12937249 | None:intergenic |
| TTTCAAGTTGAAGAAAGAAA+AGG | 0.484747 | 3_4:-12934978 | None:intergenic |
| ATTCATTGTTCCGTATTCCA+TGG | 0.490621 | 3_4:-12937264 | None:intergenic |
| ATCTTCTTGATCTCATCAGC+TGG | 0.491734 | 3_4:+12940400 | Msa0490990:CDS |
| GCTACTCATATGCGGCGGTT+GGG | 0.495690 | 3_4:-12935056 | None:intergenic |
| CGAGATCACTTGACAAAAGA+GGG | 0.498904 | 3_4:+12936185 | Msa0490990:CDS |
| TTTCTCTTTCCAGGTTAGAG+TGG | 0.501299 | 3_4:+12939983 | Msa0490990:intron |
| AAAGGGTTGTCCATGGAATA+CGG | 0.503140 | 3_4:+12937254 | Msa0490990:CDS |
| GCCTAAATTGAAAATGAAAA+GGG | 0.504520 | 3_4:+12937318 | Msa0490990:CDS |
| AAGATTCACGTGCTTTAAAG+AGG | 0.507154 | 3_4:+12936142 | Msa0490990:CDS |
| TGTTGATTATACACCACACT+TGG | 0.511127 | 3_4:+12935995 | Msa0490990:CDS |
| GCGTAAAGAATTTGAAAGAA+GGG | 0.512208 | 3_4:+12937428 | Msa0490990:CDS |
| AACGGGATGTGATGCACGTA+TGG | 0.520689 | 3_4:+12936223 | Msa0490990:CDS |
| GTTCGAAAACATTTCACTGC+AGG | 0.524411 | 3_4:+12937136 | Msa0490990:CDS |
| TATAGTAGGAGAATTGGGTT+TGG | 0.526869 | 3_4:+12936065 | Msa0490990:intron |
| TGTCATGTATCCATACCAAT+TGG | 0.531415 | 3_4:+12937877 | Msa0490990:CDS |
| GGTTGGGTGTTCGGAAGGAA+CGG | 0.532559 | 3_4:-12935040 | None:intergenic |
| ACGAGATCACTTGACAAAAG+AGG | 0.533209 | 3_4:+12936184 | Msa0490990:CDS |
| TCAAACTTCATTTCCAAGTG+TGG | 0.535116 | 3_4:-12936008 | None:intergenic |
| GAAGTTTGAATCCGAGGCAG+CGG | 0.541901 | 3_4:+12936022 | Msa0490990:CDS |
| TCAACAATTCCAATAGTTGA+AGG | 0.542316 | 3_4:+12935912 | Msa0490990:CDS |
| TTTCCGGCTTGTACAAGCAT+AGG | 0.546185 | 3_4:-12937343 | None:intergenic |
| AAATTCATATGCCGCTGCCT+CGG | 0.550925 | 3_4:-12936033 | None:intergenic |
| ATGCATTGATCTACATGAAG+AGG | 0.551822 | 3_4:+12937003 | Msa0490990:CDS |
| CTCAACTACATCTCAGACAC+AGG | 0.553533 | 3_4:-12940427 | None:intergenic |
| ATTGTGCAAAATGGGGAAGC+GGG | 0.558951 | 3_4:+12935969 | Msa0490990:CDS |
| CCAGAAATTCTAGTGATGGC+TGG | 0.564186 | 3_4:+12940077 | Msa0490990:CDS |
| CACCTTGAAAGGGTTGTCCA+TGG | 0.564856 | 3_4:+12937247 | Msa0490990:CDS |
| GCGGCGGTTGGGTGTTCGGA+AGG | 0.565899 | 3_4:-12935045 | None:intergenic |
| TTCTTCTTGAAATTCCTCAA+AGG | 0.565966 | 3_4:-12937383 | None:intergenic |
| GCTCCTATGCTTGTACAAGC+CGG | 0.569380 | 3_4:+12937340 | Msa0490990:CDS |
| GGGAGAGTAGAAACCAGAAC+GGG | 0.572783 | 3_4:+12936206 | Msa0490990:CDS |
| TGACAACAATGTCAACACTC+TGG | 0.582033 | 3_4:+12937912 | Msa0490990:CDS |
| TGACTCAGATATTTGTCGAT+GGG | 0.583735 | 3_4:-12936348 | None:intergenic |
| TCTGCCAGAAATTCTAGTGA+TGG | 0.584289 | 3_4:+12940073 | Msa0490990:CDS |
| CACTCGAGGAGTTTGTGGAC+AGG | 0.588850 | 3_4:+12940142 | Msa0490990:CDS |
| GGAAATGAAGTTTGAATCCG+AGG | 0.590661 | 3_4:+12936016 | Msa0490990:CDS |
| GATGGCTGGTGATAGGAATG+AGG | 0.594383 | 3_4:+12940091 | Msa0490990:CDS |
| ATGGCTGGTGATAGGAATGA+GGG | 0.596440 | 3_4:+12940092 | Msa0490990:CDS |
| GTGACTCAGATATTTGTCGA+TGG | 0.600504 | 3_4:-12936349 | None:intergenic |
| GTCCACAAACTCCTCGAGTG+TGG | 0.601993 | 3_4:-12940139 | None:intergenic |
| CGAGGAGTATGAAAATGCCC+TGG | 0.603338 | 3_4:-12936323 | None:intergenic |
| AGATTCACGTGCTTTAAAGA+GGG | 0.609935 | 3_4:+12936143 | Msa0490990:CDS |
| TGGCAGAATTGCTGAAGTGT+GGG | 0.610074 | 3_4:-12940057 | None:intergenic |
| TCAACACTCTGGATGTTGGT+GGG | 0.611788 | 3_4:+12937923 | Msa0490990:CDS |
| GGGGAGAGTAGAAACCAGAA+CGG | 0.611921 | 3_4:+12936205 | Msa0490990:CDS |
| CTGGCAGAATTGCTGAAGTG+TGG | 0.615832 | 3_4:-12940058 | None:intergenic |
| TATTGTGCAAAATGGGGAAG+CGG | 0.624506 | 3_4:+12935968 | Msa0490990:CDS |
| CAACACTCTGGATGTTGGTG+GGG | 0.627596 | 3_4:+12937924 | Msa0490990:CDS |
| GTCAACACTCTGGATGTTGG+TGG | 0.637024 | 3_4:+12937922 | Msa0490990:CDS |
| ATGTGTACAAGCAAGATGGT+GGG | 0.637123 | 3_4:+12936432 | Msa0490990:CDS |
| TGTATCCATACCAATTGGCA+CGG | 0.642140 | 3_4:+12937882 | Msa0490990:CDS |
| GATATTTGTCGATGGGAGCG+AGG | 0.642651 | 3_4:-12936341 | None:intergenic |
| AATGTCAACACTCTGGATGT+TGG | 0.652365 | 3_4:+12937919 | Msa0490990:CDS |
| TATGTGTACAAGCAAGATGG+TGG | 0.654711 | 3_4:+12936431 | Msa0490990:CDS |
| TGGGTGTTCGGAAGGAACGG+CGG | 0.660545 | 3_4:-12935037 | None:intergenic |
| GAGTATGTGTACAAGCAAGA+TGG | 0.660702 | 3_4:+12936428 | Msa0490990:CDS |
| GATGGTGGGATAGATGCTGT+TGG | 0.661335 | 3_4:+12936446 | Msa0490990:CDS |
| ATTGATCTACATGAAGAGGA+AGG | 0.663372 | 3_4:+12937007 | Msa0490990:CDS |
| ACGATTATCTCAAGTTGTAG+CGG | 0.663702 | 3_4:+12936370 | Msa0490990:CDS |
| AGTTTCGCCTACTAAACGAA+AGG | 0.665735 | 3_4:+12940115 | Msa0490990:CDS |
| TGCTTTAAAGAGGGTAAACG+AGG | 0.666478 | 3_4:+12936152 | Msa0490990:CDS |
| AAACGAAAGGACCACACTCG+AGG | 0.667654 | 3_4:+12940128 | Msa0490990:CDS |
| AACGGCGGCACTGCACGATG+TGG | 0.669788 | 3_4:-12935022 | None:intergenic |
| ATTATCTCAAGTTGTAGCGG+CGG | 0.671783 | 3_4:+12936373 | Msa0490990:CDS |
| AATACGGAACAATGAATCAG+AGG | 0.679671 | 3_4:+12937270 | Msa0490990:CDS |
| CCTGAAACGCTACTCATATG+CGG | 0.688874 | 3_4:-12935064 | None:intergenic |
| TGTGAATATTGTGCAAAATG+GGG | 0.700357 | 3_4:+12935962 | Msa0490990:CDS |
| GAGATCACTTGACAAAAGAG+GGG | 0.708310 | 3_4:+12936186 | Msa0490990:CDS |
| GGAGTATGAAAATGCCCTGG+CGG | 0.712650 | 3_4:-12936320 | None:intergenic |
| GAAACGCTACTCATATGCGG+CGG | 0.723529 | 3_4:-12935061 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAAAATAAAAATAGATAA+AGG | - | chr3_4:12935778-12935797 | None:intergenic | 10.0% |
| !!! | AATTTTATAATATGTATAGT+AGG | + | chr3_4:12936051-12936070 | Msa0490990:intron | 10.0% |
| !! | TACAAATTATGATAATAATA+AGG | + | chr3_4:12937462-12937481 | Msa0490990:intron | 10.0% |
| !!! | TATTATTTAAAATGCTTAAA+AGG | + | chr3_4:12938835-12938854 | Msa0490990:intron | 10.0% |
| !!! | ATTATTTAAAATGCTTAAAA+GGG | + | chr3_4:12938836-12938855 | Msa0490990:intron | 10.0% |
| !! | AAATTTCTATGAATATTACT+AGG | + | chr3_4:12935123-12935142 | Msa0490990:intron | 15.0% |
| !! | AATTTCTATGAATATTACTA+GGG | + | chr3_4:12935124-12935143 | Msa0490990:intron | 15.0% |
| !!! | TAAAATAATTGATGATATGT+TGG | + | chr3_4:12937819-12937838 | Msa0490990:CDS | 15.0% |
| !! | GAAAATTTACAATGAATTTA+AGG | + | chr3_4:12938536-12938555 | Msa0490990:intron | 15.0% |
| !!! | GCATTTTAAATAATAAAGAT+GGG | - | chr3_4:12938830-12938849 | None:intergenic | 15.0% |
| !!! | AGCATTTTAAATAATAAAGA+TGG | - | chr3_4:12938831-12938850 | None:intergenic | 15.0% |
| !! | GTACAATAAAATAAATAAAG+CGG | - | chr3_4:12939146-12939165 | None:intergenic | 15.0% |
| !! | TAATTAAACTATATGAACTT+TGG | + | chr3_4:12939326-12939345 | Msa0490990:intron | 15.0% |
| !! | TATATGAAATAAAAATGTCT+AGG | + | chr3_4:12939452-12939471 | Msa0490990:intron | 15.0% |
| !! | AAAAACGCGAATTTATAAAA+CGG | - | chr3_4:12935409-12935428 | None:intergenic | 20.0% |
| !! | AAACTAGGGTTTATTTAAAA+GGG | + | chr3_4:12935458-12935477 | Msa0490990:intron | 20.0% |
| !! | AGAAAAAGGTAGAAATATTA+GGG | + | chr3_4:12935603-12935622 | Msa0490990:intron | 20.0% |
| !! | TTTATTACTAAGAGATACAA+CGG | - | chr3_4:12935657-12935676 | None:intergenic | 20.0% |
| !!! | TTTTTTTAAGGAAACATGAA+TGG | + | chr3_4:12935888-12935907 | Msa0490990:intron | 20.0% |
| !!! | TTTTTTAAGGAAACATGAAT+GGG | + | chr3_4:12935889-12935908 | Msa0490990:intron | 20.0% |
| !!! | AGCAAATAACAAATGTATTT+TGG | + | chr3_4:12936591-12936610 | Msa0490990:intron | 20.0% |
| !!! | GCAAATAACAAATGTATTTT+GGG | + | chr3_4:12936592-12936611 | Msa0490990:intron | 20.0% |
| !!! | TTTTTCAATTGAAGGAAAAA+TGG | + | chr3_4:12937101-12937120 | Msa0490990:CDS | 20.0% |
| !!! | TTTTCAATTGAAGGAAAAAT+GGG | + | chr3_4:12937102-12937121 | Msa0490990:CDS | 20.0% |
| !! | ATTATGATAATAATAAGGAG+CGG | + | chr3_4:12937467-12937486 | Msa0490990:intron | 20.0% |
| !! | AAGAAAAAACTTTAATTGCA+TGG | - | chr3_4:12939199-12939218 | None:intergenic | 20.0% |
| !! | AAAAAATACGTGCATAAAAA+AGG | + | chr3_4:12939498-12939517 | Msa0490990:intron | 20.0% |
| !! | AAAAATACGTGCATAAAAAA+GGG | + | chr3_4:12939499-12939518 | Msa0490990:intron | 20.0% |
| !!! | ATTTTATTGAATAATAGAGG+AGG | - | chr3_4:12940362-12940381 | None:intergenic | 20.0% |
| !!! | GGAATTTTATTGAATAATAG+AGG | - | chr3_4:12940365-12940384 | None:intergenic | 20.0% |
| !!! | TTTCAAGTTGAAGAAAGAAA+AGG | - | chr3_4:12934981-12935000 | None:intergenic | 25.0% |
| ! | CAAACTAGGGTTTATTTAAA+AGG | + | chr3_4:12935457-12935476 | Msa0490990:intron | 25.0% |
| ! | AACTAGGGTTTATTTAAAAG+GGG | + | chr3_4:12935459-12935478 | Msa0490990:intron | 25.0% |
| !! | ATCTAAGAATTGAGTACTTT+TGG | + | chr3_4:12935499-12935518 | Msa0490990:intron | 25.0% |
| !! | TCTAAGAATTGAGTACTTTT+GGG | + | chr3_4:12935500-12935519 | Msa0490990:intron | 25.0% |
| !!! | AGTACTTTTGGGATATATTA+TGG | + | chr3_4:12935511-12935530 | Msa0490990:intron | 25.0% |
| !!! | GTACTTTTGGGATATATTAT+GGG | + | chr3_4:12935512-12935531 | Msa0490990:intron | 25.0% |
| !!! | TACTTTTGGGATATATTATG+GGG | + | chr3_4:12935513-12935532 | Msa0490990:intron | 25.0% |
| ! | GAGAAAAAGGTAGAAATATT+AGG | + | chr3_4:12935602-12935621 | Msa0490990:intron | 25.0% |
| ! | TCTCTTAGTAATAAACTCAT+TGG | + | chr3_4:12935662-12935681 | Msa0490990:intron | 25.0% |
| ! | TTTGTTTGATCACTTTAGTT+TGG | + | chr3_4:12935800-12935819 | Msa0490990:intron | 25.0% |
| ! | AATATGTATAGTAGGAGAAT+TGG | + | chr3_4:12936059-12936078 | Msa0490990:intron | 25.0% |
| ! | ATATGTATAGTAGGAGAATT+GGG | + | chr3_4:12936060-12936079 | Msa0490990:intron | 25.0% |
| ! | GGAAATAAAAGCAAAAAAGA+TGG | + | chr3_4:12936104-12936123 | Msa0490990:CDS | 25.0% |
| !! | ATTCTTTTATGACTTCCAAA+TGG | + | chr3_4:12936559-12936578 | Msa0490990:intron | 25.0% |
| ! | ATAAACGATTATGGATACTT+CGG | + | chr3_4:12936629-12936648 | Msa0490990:intron | 25.0% |
| ! | CAAATAACCATTGAAAAGAA+GGG | - | chr3_4:12936784-12936803 | None:intergenic | 25.0% |
| ! | TCAAATAACCATTGAAAAGA+AGG | - | chr3_4:12936785-12936804 | None:intergenic | 25.0% |
| !! | ATAATGTTTCTGAAGATTCA+TGG | + | chr3_4:12937068-12937087 | Msa0490990:CDS | 25.0% |
| ! | CCTTCAATTGAAAAATCATA+CGG | - | chr3_4:12937096-12937115 | None:intergenic | 25.0% |
| ! | TGCCTAAATTGAAAATGAAA+AGG | + | chr3_4:12937317-12937336 | Msa0490990:CDS | 25.0% |
| ! | GCCTAAATTGAAAATGAAAA+GGG | + | chr3_4:12937318-12937337 | Msa0490990:CDS | 25.0% |
| ! | ATATAAAAGCTCATTTCATG+AGG | + | chr3_4:12937695-12937714 | Msa0490990:intron | 25.0% |
| ! | TTGATCAATTTAACCATTTG+AGG | - | chr3_4:12937739-12937758 | None:intergenic | 25.0% |
| ! | ATTAGACTCTTCAAAAACTT+TGG | - | chr3_4:12937800-12937819 | None:intergenic | 25.0% |
| ! | GCTCAAATAATGCTAAAAAA+CGG | + | chr3_4:12937972-12937991 | Msa0490990:intron | 25.0% |
| ! | CTCAAATAATGCTAAAAAAC+GGG | + | chr3_4:12937973-12937992 | Msa0490990:intron | 25.0% |
| ! | TCAAATAATGCTAAAAAACG+GGG | + | chr3_4:12937974-12937993 | Msa0490990:intron | 25.0% |
| !!! | TGAAAAGACTTTTGAAGATT+GGG | - | chr3_4:12938311-12938330 | None:intergenic | 25.0% |
| !!! | ATGAAAAGACTTTTGAAGAT+TGG | - | chr3_4:12938312-12938331 | None:intergenic | 25.0% |
| ! | ATGGATAAAGTTTGAAGAAA+GGG | - | chr3_4:12938393-12938412 | None:intergenic | 25.0% |
| ! | TATGGATAAAGTTTGAAGAA+AGG | - | chr3_4:12938394-12938413 | None:intergenic | 25.0% |
| !!! | CTCAATTTTCATTTGAAGTT+TGG | - | chr3_4:12939301-12939320 | None:intergenic | 25.0% |
| !!! | TTTTAGTTCATACACTAACT+TGG | + | chr3_4:12939367-12939386 | Msa0490990:intron | 25.0% |
| !!! | TTCATAGACTCCTTTTTTTT+GGG | - | chr3_4:12940168-12940187 | None:intergenic | 25.0% |
| !!! | TTTCATAGACTCCTTTTTTT+TGG | - | chr3_4:12940169-12940188 | None:intergenic | 25.0% |
| ! | AAAAAAAAGGAGTCTATGAA+AGG | + | chr3_4:12940168-12940187 | Msa0490990:CDS | 25.0% |
| !!! | ACTTTGGTTCAGAATTATTT+TGG | + | chr3_4:12940250-12940269 | Msa0490990:intron | 25.0% |
| !!! | ATTATTTTGGAGTTCTGTTA+TGG | + | chr3_4:12940263-12940282 | Msa0490990:intron | 25.0% |
| ATTACTAGGGTAAACAATCA+TGG | + | chr3_4:12935137-12935156 | Msa0490990:intron | 30.0% | |
| ! | TTCTCAGAATAGCGATTTTA+AGG | - | chr3_4:12935371-12935390 | None:intergenic | 30.0% |
| ACTAGGGTTTATTTAAAAGG+GGG | + | chr3_4:12935460-12935479 | Msa0490990:intron | 30.0% | |
| TTATTTAAAAGGGGGATCTT+AGG | + | chr3_4:12935468-12935487 | Msa0490990:intron | 30.0% | |
| TATTTAAAAGGGGGATCTTA+GGG | + | chr3_4:12935469-12935488 | Msa0490990:intron | 30.0% | |
| CAGGAAGATATTTGAGAAAA+AGG | + | chr3_4:12935589-12935608 | Msa0490990:intron | 30.0% | |
| AGTAATAAACTCATTGGTAG+TGG | + | chr3_4:12935668-12935687 | Msa0490990:intron | 30.0% | |
| TCAACAATTCCAATAGTTGA+AGG | + | chr3_4:12935912-12935931 | Msa0490990:CDS | 30.0% | |
| GTGTGAATATTGTGCAAAAT+GGG | + | chr3_4:12935961-12935980 | Msa0490990:CDS | 30.0% | |
| TGTGAATATTGTGCAAAATG+GGG | + | chr3_4:12935962-12935981 | Msa0490990:CDS | 30.0% | |
| ATTTCACTTGATCGAAAGAT+TGG | + | chr3_4:12936248-12936267 | Msa0490990:CDS | 30.0% | |
| !! | TTGGTTTTCTTCGAACTAAA+AGG | + | chr3_4:12936465-12936484 | Msa0490990:intron | 30.0% |
| CATTGTTGATGCATTTCAAA+CGG | + | chr3_4:12936519-12936538 | Msa0490990:intron | 30.0% | |
| TGGAAGTCATAAAAGAATGA+AGG | - | chr3_4:12936557-12936576 | None:intergenic | 30.0% | |
| GCACAAATGATAAACGATTA+TGG | + | chr3_4:12936620-12936639 | Msa0490990:intron | 30.0% | |
| TACGACATACATGACAAATA+AGG | + | chr3_4:12936670-12936689 | Msa0490990:intron | 30.0% | |
| ACTAAATAATCACAAGCAGA+TGG | + | chr3_4:12936721-12936740 | Msa0490990:intron | 30.0% | |
| ! | AAACAATCCCTTCTTTTCAA+TGG | + | chr3_4:12936774-12936793 | Msa0490990:intron | 30.0% |
| ! | TGAAACTTTTCTCAAAGCAA+TGG | + | chr3_4:12936802-12936821 | Msa0490990:intron | 30.0% |
| ! | GAAACTTTTCTCAAAGCAAT+GGG | + | chr3_4:12936803-12936822 | Msa0490990:intron | 30.0% |
| TTGAACTCTCTTGATATAGA+TGG | - | chr3_4:12936961-12936980 | None:intergenic | 30.0% | |
| !! | CCGTATGATTTTTCAATTGA+AGG | + | chr3_4:12937093-12937112 | Msa0490990:CDS | 30.0% |
| ! | AATTTTTCACACACCTTGAA+AGG | + | chr3_4:12937236-12937255 | Msa0490990:CDS | 30.0% |
| ! | ATTTTTCACACACCTTGAAA+GGG | + | chr3_4:12937237-12937256 | Msa0490990:CDS | 30.0% |
| ! | GCCCTTTTCATTTTCAATTT+AGG | - | chr3_4:12937322-12937341 | None:intergenic | 30.0% |
| !!! | TTTTGGAGTGTAAATGTTTC+CGG | - | chr3_4:12937362-12937381 | None:intergenic | 30.0% |
| ! | TGAAATTCCTCAAAGGTTTT+TGG | - | chr3_4:12937379-12937398 | None:intergenic | 30.0% |
| TTCTTCTTGAAATTCCTCAA+AGG | - | chr3_4:12937386-12937405 | None:intergenic | 30.0% | |
| GGAATTTCAAGAAGAATATG+AGG | + | chr3_4:12937390-12937409 | Msa0490990:CDS | 30.0% | |
| GAAGAATATGAGGAATATCT+AGG | + | chr3_4:12937400-12937419 | Msa0490990:CDS | 30.0% | |
| TGCGTAAAGAATTTGAAAGA+AGG | + | chr3_4:12937427-12937446 | Msa0490990:CDS | 30.0% | |
| GCGTAAAGAATTTGAAAGAA+GGG | + | chr3_4:12937428-12937447 | Msa0490990:CDS | 30.0% | |
| ATTGGGAAGTAATCAAGATT+TGG | + | chr3_4:12937651-12937670 | Msa0490990:intron | 30.0% | |
| GAAGTAATCAAGATTTGGAA+GGG | + | chr3_4:12937656-12937675 | Msa0490990:intron | 30.0% | |
| ! | GCTTTTATATCCAGTTCAAT+AGG | - | chr3_4:12937685-12937704 | None:intergenic | 30.0% |
| ! | TATGTTGGCTAAAAAGTTTG+TGG | + | chr3_4:12937834-12937853 | Msa0490990:CDS | 30.0% |
| ! | ATGTTGGCTAAAAAGTTTGT+GGG | + | chr3_4:12937835-12937854 | Msa0490990:CDS | 30.0% |
| GATTCTCACAAGAAAGAAAA+AGG | - | chr3_4:12938186-12938205 | None:intergenic | 30.0% | |
| ! | TTCAAAAGTCTTTTCATCTC+AGG | + | chr3_4:12938315-12938334 | Msa0490990:intron | 30.0% |
| CATACACACTCAATTGATAA+AGG | - | chr3_4:12938487-12938506 | None:intergenic | 30.0% | |
| CTTTATCAATTGAGTGTGTA+TGG | + | chr3_4:12938485-12938504 | Msa0490990:intron | 30.0% | |
| AGTAGACAAACTCTCAAAAT+AGG | - | chr3_4:12938575-12938594 | None:intergenic | 30.0% | |
| ATGAATTCCCTGATGAAAAT+TGG | + | chr3_4:12938763-12938782 | Msa0490990:intron | 30.0% | |
| CTGTTATCAGTAATTATGCA+TGG | - | chr3_4:12939043-12939062 | None:intergenic | 30.0% | |
| ! | TTTTCTTTTTGCCATTGCAT+TGG | + | chr3_4:12939111-12939130 | Msa0490990:intron | 30.0% |
| AAAACTTTAATTGCATGGCA+TGG | - | chr3_4:12939194-12939213 | None:intergenic | 30.0% | |
| !! | TTATTTCTACCACGTATAAC+TGG | + | chr3_4:12939218-12939237 | Msa0490990:intron | 30.0% |
| AAAGAGAAACTGACACAAAT+TGG | - | chr3_4:12939972-12939991 | None:intergenic | 30.0% | |
| GAAGATTGAGAAAGACTAAA+TGG | - | chr3_4:12940386-12940405 | None:intergenic | 30.0% | |
| ATTGACGAACAACACATTTG+AGG | + | chr3_4:12935230-12935249 | Msa0490990:intron | 35.0% | |
| !! | GTCGCTTTAGTTAGTCATTT+TGG | - | chr3_4:12935257-12935276 | None:intergenic | 35.0% |
| TCTTCAATTTCGACACATTC+AGG | + | chr3_4:12935289-12935308 | Msa0490990:intron | 35.0% | |
| CTTCAATTTCGACACATTCA+GGG | + | chr3_4:12935290-12935309 | Msa0490990:intron | 35.0% | |
| ATTTAAAAGGGGGATCTTAG+GGG | + | chr3_4:12935470-12935489 | Msa0490990:intron | 35.0% | |
| TTGGGATATATTATGGGGTT+CGG | + | chr3_4:12935518-12935537 | Msa0490990:intron | 35.0% | |
| CGGAAACAATCTAAACACTT+TGG | + | chr3_4:12935538-12935557 | Msa0490990:intron | 35.0% | |
| !! | TAAACTCATTGGTAGTGGTT+TGG | + | chr3_4:12935673-12935692 | Msa0490990:intron | 35.0% |
| TTGCTAATCGAATTCATAGC+AGG | + | chr3_4:12935826-12935845 | Msa0490990:intron | 35.0% | |
| TTCTCTACACCTTCAACTAT+TGG | - | chr3_4:12935924-12935943 | None:intergenic | 35.0% | |
| ! | AGTTGAAGGTGTAGAGAAAT+CGG | + | chr3_4:12935926-12935945 | Msa0490990:CDS | 35.0% |
| GAGAAATCGGTGAACAATAT+TGG | + | chr3_4:12935939-12935958 | Msa0490990:CDS | 35.0% | |
| GGTGTGAATATTGTGCAAAA+TGG | + | chr3_4:12935960-12935979 | Msa0490990:CDS | 35.0% | |
| ! | TGTTGATTATACACCACACT+TGG | + | chr3_4:12935995-12936014 | Msa0490990:CDS | 35.0% |
| TCAAACTTCATTTCCAAGTG+TGG | - | chr3_4:12936011-12936030 | None:intergenic | 35.0% | |
| TATAGTAGGAGAATTGGGTT+TGG | + | chr3_4:12936065-12936084 | Msa0490990:intron | 35.0% | |
| TTTGGTATTCGTCGAGAATA+TGG | + | chr3_4:12936083-12936102 | Msa0490990:CDS | 35.0% | |
| !! | AAGATTCACGTGCTTTAAAG+AGG | + | chr3_4:12936142-12936161 | Msa0490990:CDS | 35.0% |
| !! | AGATTCACGTGCTTTAAAGA+GGG | + | chr3_4:12936143-12936162 | Msa0490990:CDS | 35.0% |
| TCGAAAGATTGGTAAGTACA+AGG | + | chr3_4:12936259-12936278 | Msa0490990:intron | 35.0% | |
| TGACTCAGATATTTGTCGAT+GGG | - | chr3_4:12936351-12936370 | None:intergenic | 35.0% | |
| ! | ACGATTATCTCAAGTTGTAG+CGG | + | chr3_4:12936370-12936389 | Msa0490990:CDS | 35.0% |
| TTCTTCGAACTAAAAGGATG+CGG | + | chr3_4:12936471-12936490 | Msa0490990:intron | 35.0% | |
| TCACTAATGTATGGTGAAGT+GGG | + | chr3_4:12936494-12936513 | Msa0490990:intron | 35.0% | |
| TTTGCTCTTCAACATCCATT+TGG | - | chr3_4:12936577-12936596 | None:intergenic | 35.0% | |
| TGTCATGTATGTCGTATCAA+AGG | - | chr3_4:12936666-12936685 | None:intergenic | 35.0% | |
| ! | TGATCAGTTAGAAGGGTTTT+AGG | - | chr3_4:12936839-12936858 | None:intergenic | 35.0% |
| TGCATGTTGATCAGTTAGAA+GGG | - | chr3_4:12936846-12936865 | None:intergenic | 35.0% | |
| TTGCATGTTGATCAGTTAGA+AGG | - | chr3_4:12936847-12936866 | None:intergenic | 35.0% | |
| TCAACATGCAACAATTGCTA+AGG | + | chr3_4:12936856-12936875 | Msa0490990:intron | 35.0% | |
| !! | GGCTATTTCTTTAGTTATGC+CGG | + | chr3_4:12936877-12936896 | Msa0490990:intron | 35.0% |
| CACAATCCATGAAATGTTTC+CGG | - | chr3_4:12936899-12936918 | None:intergenic | 35.0% | |
| ! | ATGCATTGATCTACATGAAG+AGG | + | chr3_4:12937003-12937022 | Msa0490990:CDS | 35.0% |
| ATTGATCTACATGAAGAGGA+AGG | + | chr3_4:12937007-12937026 | Msa0490990:CDS | 35.0% | |
| AATTGAAGGAAAAATGGGCA+TGG | + | chr3_4:12937107-12937126 | Msa0490990:CDS | 35.0% | |
| ATTGAAGGAAAAATGGGCAT+GGG | + | chr3_4:12937108-12937127 | Msa0490990:CDS | 35.0% | |
| ATTCATTGTTCCGTATTCCA+TGG | - | chr3_4:12937267-12937286 | None:intergenic | 35.0% | |
| AATACGGAACAATGAATCAG+AGG | + | chr3_4:12937270-12937289 | Msa0490990:CDS | 35.0% | |
| CTCATGTCTTGACTCATAAT+CGG | - | chr3_4:12937296-12937315 | None:intergenic | 35.0% | |
| TTACACTCCAAAAACCTTTG+AGG | + | chr3_4:12937369-12937388 | Msa0490990:CDS | 35.0% | |
| TGATAATAATAAGGAGCGGA+CGG | + | chr3_4:12937471-12937490 | Msa0490990:intron | 35.0% | |
| ! | TGTCGTAAATTTGAGACACA+TGG | + | chr3_4:12937532-12937551 | Msa0490990:intron | 35.0% |
| AACACTATATACTGAAGCGA+TGG | + | chr3_4:12937614-12937633 | Msa0490990:intron | 35.0% | |
| GGAAGTAATCAAGATTTGGA+AGG | + | chr3_4:12937655-12937674 | Msa0490990:intron | 35.0% | |
| ! | TGTTGGCTAAAAAGTTTGTG+GGG | + | chr3_4:12937836-12937855 | Msa0490990:CDS | 35.0% |
| TGTCATGTATCCATACCAAT+TGG | + | chr3_4:12937877-12937896 | Msa0490990:CDS | 35.0% | |
| ATAATGCTAAAAAACGGGGT+TGG | + | chr3_4:12937978-12937997 | Msa0490990:intron | 35.0% | |
| AGGAGAGATTGTAATGTTGA+GGG | - | chr3_4:12938166-12938185 | None:intergenic | 35.0% | |
| AAGGAGAGATTGTAATGTTG+AGG | - | chr3_4:12938167-12938186 | None:intergenic | 35.0% | |
| CAATATGGTAAGGATTCATG+AGG | - | chr3_4:12938220-12938239 | None:intergenic | 35.0% | |
| AAGTGAAGTGCAATATGGTA+AGG | - | chr3_4:12938230-12938249 | None:intergenic | 35.0% | |
| TTCTCAAGTGAAGTGCAATA+TGG | - | chr3_4:12938235-12938254 | None:intergenic | 35.0% | |
| AAGATTGGGACAAGCATATA+TGG | - | chr3_4:12938412-12938431 | None:intergenic | 35.0% | |
| TATATGCTTGTCCCAATCTT+CGG | + | chr3_4:12938412-12938431 | Msa0490990:intron | 35.0% | |
| ! | TGACTCTCCAATTTTCATCA+GGG | - | chr3_4:12938773-12938792 | None:intergenic | 35.0% |
| ! | ATGACTCTCCAATTTTCATC+AGG | - | chr3_4:12938774-12938793 | None:intergenic | 35.0% |
| TGTATCAATACGAGAGAAGT+CGG | - | chr3_4:12938802-12938821 | None:intergenic | 35.0% | |
| ! | CATTTGAAGTTTGGTTCACT+TGG | - | chr3_4:12939292-12939311 | None:intergenic | 35.0% |
| !!! | TAGGATCTGTCAGTTTTGTT+TGG | + | chr3_4:12939471-12939490 | Msa0490990:intron | 35.0% |
| !!! | AGGATCTGTCAGTTTTGTTT+GGG | + | chr3_4:12939472-12939491 | Msa0490990:intron | 35.0% |
| ! | TGTGATAGTGAGAAGATAGA+CGG | + | chr3_4:12939743-12939762 | Msa0490990:intron | 35.0% |
| GAAACAATGAAACCGTGTTT+CGG | + | chr3_4:12939790-12939809 | Msa0490990:intron | 35.0% | |
| ATCGAGGTAAAGATTGTTGT+GGG | + | chr3_4:12939821-12939840 | Msa0490990:intron | 35.0% | |
| TGGAGTTTGCATCCAATAAA+TGG | + | chr3_4:12940003-12940022 | Msa0490990:CDS | 35.0% | |
| TGTTCCAGAAGACCATTTAT+TGG | - | chr3_4:12940018-12940037 | None:intergenic | 35.0% | |
| !! | ATGGAAAGAGAGTATTCTCT+TGG | + | chr3_4:12940282-12940301 | Msa0490990:intron | 35.0% |
| !! | TGGAAAGAGAGTATTCTCTT+GGG | + | chr3_4:12940283-12940302 | Msa0490990:intron | 35.0% |
| ! | ATCGCTATTCTGAGAAGTTG+CGG | + | chr3_4:12935375-12935394 | Msa0490990:intron | 40.0% |
| !! | CGTTTTTCAGCACAGTTTGT+AGG | + | chr3_4:12935422-12935441 | Msa0490990:intron | 40.0% |
| TCGTTGAGTCTCTTGATTAC+AGG | + | chr3_4:12935570-12935589 | Msa0490990:intron | 40.0% | |
| CAACAATGACCTACGTCTAA+GGG | - | chr3_4:12935711-12935730 | None:intergenic | 40.0% | |
| CTTAGACGTAGGTCATTGTT+GGG | + | chr3_4:12935710-12935729 | Msa0490990:intron | 40.0% | |
| TATTGTGCAAAATGGGGAAG+CGG | + | chr3_4:12935968-12935987 | Msa0490990:CDS | 40.0% | |
| GGAAATGAAGTTTGAATCCG+AGG | + | chr3_4:12936016-12936035 | Msa0490990:CDS | 40.0% | |
| !! | TGCTTTAAAGAGGGTAAACG+AGG | + | chr3_4:12936152-12936171 | Msa0490990:CDS | 40.0% |
| ACGAGATCACTTGACAAAAG+AGG | + | chr3_4:12936184-12936203 | Msa0490990:CDS | 40.0% | |
| CGAGATCACTTGACAAAAGA+GGG | + | chr3_4:12936185-12936204 | Msa0490990:CDS | 40.0% | |
| GAGATCACTTGACAAAAGAG+GGG | + | chr3_4:12936186-12936205 | Msa0490990:CDS | 40.0% | |
| ! | AATCATTTTCTTGAACCGCC+AGG | + | chr3_4:12936305-12936324 | Msa0490990:CDS | 40.0% |
| ! | ATCATTTTCTTGAACCGCCA+GGG | + | chr3_4:12936306-12936325 | Msa0490990:CDS | 40.0% |
| GTGACTCAGATATTTGTCGA+TGG | - | chr3_4:12936352-12936371 | None:intergenic | 40.0% | |
| ! | ATTATCTCAAGTTGTAGCGG+CGG | + | chr3_4:12936373-12936392 | Msa0490990:CDS | 40.0% |
| GAGTATGTGTACAAGCAAGA+TGG | + | chr3_4:12936428-12936447 | Msa0490990:CDS | 40.0% | |
| TATGTGTACAAGCAAGATGG+TGG | + | chr3_4:12936431-12936450 | Msa0490990:CDS | 40.0% | |
| ATGTGTACAAGCAAGATGGT+GGG | + | chr3_4:12936432-12936451 | Msa0490990:CDS | 40.0% | |
| GTCACTAATGTATGGTGAAG+TGG | + | chr3_4:12936493-12936512 | Msa0490990:intron | 40.0% | |
| AAATAAGGATTATCGCCCGT+TGG | + | chr3_4:12936685-12936704 | Msa0490990:intron | 40.0% | |
| AATAAGGATTATCGCCCGTT+GGG | + | chr3_4:12936686-12936705 | Msa0490990:intron | 40.0% | |
| AGTCCAACAAATACTCCCAA+CGG | - | chr3_4:12936704-12936723 | None:intergenic | 40.0% | |
| !! | CACAAGCAGATGGTTGTTTT+TGG | + | chr3_4:12936731-12936750 | Msa0490990:intron | 40.0% |
| ! | ACTTTTCTCAAAGCAATGGG+TGG | + | chr3_4:12936806-12936825 | Msa0490990:intron | 40.0% |
| GTTATGCCGGAAACATTTCA+TGG | + | chr3_4:12936890-12936909 | Msa0490990:intron | 40.0% | |
| ! | CATTTCATGGATTGTGCACT+TGG | + | chr3_4:12936903-12936922 | Msa0490990:intron | 40.0% |
| !! | AAGGTGTGTTTTTGAACGCA+TGG | + | chr3_4:12937026-12937045 | Msa0490990:CDS | 40.0% |
| GTTCGAAAACATTTCACTGC+AGG | + | chr3_4:12937136-12937155 | Msa0490990:CDS | 40.0% | |
| AAAGGGTTGTCCATGGAATA+CGG | + | chr3_4:12937254-12937273 | Msa0490990:CDS | 40.0% | |
| GGGGAATCTTATGGATCAAA+AGG | + | chr3_4:12937498-12937517 | Msa0490990:intron | 40.0% | |
| CGCTTCAGTATATAGTGTTG+AGG | - | chr3_4:12937613-12937632 | None:intergenic | 40.0% | |
| ATGGACAAGAGATGCTAGAT+TGG | + | chr3_4:12937633-12937652 | Msa0490990:intron | 40.0% | |
| TGGACAAGAGATGCTAGATT+GGG | + | chr3_4:12937634-12937653 | Msa0490990:intron | 40.0% | |
| CAACGAGTTATGTCCTCAAA+TGG | + | chr3_4:12937723-12937742 | Msa0490990:intron | 40.0% | |
| GTTGGCTAAAAAGTTTGTGG+GGG | + | chr3_4:12937837-12937856 | Msa0490990:CDS | 40.0% | |
| TGTATCCATACCAATTGGCA+CGG | + | chr3_4:12937882-12937901 | Msa0490990:CDS | 40.0% | |
| ! | TTTTTCCGTGCCAATTGGTA+TGG | - | chr3_4:12937890-12937909 | None:intergenic | 40.0% |
| !!! | TCACTTTTTTCCGTGCCAAT+TGG | - | chr3_4:12937895-12937914 | None:intergenic | 40.0% |
| TGACAACAATGTCAACACTC+TGG | + | chr3_4:12937912-12937931 | Msa0490990:CDS | 40.0% | |
| AATGTCAACACTCTGGATGT+TGG | + | chr3_4:12937919-12937938 | Msa0490990:CDS | 40.0% | |
| TTGAGGGGAGAACATTTCTT+GGG | - | chr3_4:12938150-12938169 | None:intergenic | 40.0% | |
| GGAGAGATTGTAATGTTGAG+GGG | - | chr3_4:12938165-12938184 | None:intergenic | 40.0% | |
| GTGATTCATTGACATCCTCT+CGG | + | chr3_4:12938275-12938294 | Msa0490990:intron | 40.0% | |
| AGTGGAAATGACCGAAGATT+GGG | - | chr3_4:12938426-12938445 | None:intergenic | 40.0% | |
| AAGTGGAAATGACCGAAGAT+TGG | - | chr3_4:12938427-12938446 | None:intergenic | 40.0% | |
| TGAGCATTCAGTCTATGAAG+TGG | - | chr3_4:12938444-12938463 | None:intergenic | 40.0% | |
| TGTCTACTTCAGCTATCACT+AGG | + | chr3_4:12938587-12938606 | Msa0490990:intron | 40.0% | |
| TACTTCAGCTATCACTAGGT+GGG | + | chr3_4:12938591-12938610 | Msa0490990:intron | 40.0% | |
| TTGAGATTTCAGATTGTCGC+CGG | + | chr3_4:12938893-12938912 | Msa0490990:intron | 40.0% | |
| CTTGAATCCTTACCAGAAGA+AGG | + | chr3_4:12938916-12938935 | Msa0490990:intron | 40.0% | |
| CTTCTTCTTCCAGTTATACG+TGG | - | chr3_4:12939230-12939249 | None:intergenic | 40.0% | |
| GAAACCAACAAGAACTCTCA+TGG | - | chr3_4:12939614-12939633 | None:intergenic | 40.0% | |
| CATCGAGGTAAAGATTGTTG+TGG | + | chr3_4:12939820-12939839 | Msa0490990:intron | 40.0% | |
| TTGTGTCAGTTTCTCTTTCC+AGG | + | chr3_4:12939974-12939993 | Msa0490990:intron | 40.0% | |
| TTTCTCTTTCCAGGTTAGAG+TGG | + | chr3_4:12939983-12940002 | Msa0490990:intron | 40.0% | |
| GCATCCAATAAATGGTCTTC+TGG | + | chr3_4:12940011-12940030 | Msa0490990:CDS | 40.0% | |
| TCTGCCAGAAATTCTAGTGA+TGG | + | chr3_4:12940073-12940092 | Msa0490990:CDS | 40.0% | |
| AGTTTCGCCTACTAAACGAA+AGG | + | chr3_4:12940115-12940134 | Msa0490990:CDS | 40.0% | |
| !! | AAGTTTCTAGAATGCTGAGC+TGG | + | chr3_4:12940221-12940240 | Msa0490990:intron | 40.0% |
| ! | ATACTACTAGCCTAACCAAG+TGG | - | chr3_4:12940311-12940330 | None:intergenic | 40.0% |
| ATCTTCTTGATCTCATCAGC+TGG | + | chr3_4:12940400-12940419 | Msa0490990:CDS | 40.0% | |
| CCTGAAACGCTACTCATATG+CGG | - | chr3_4:12935067-12935086 | None:intergenic | 45.0% | |
| TTCAGCACAGTTTGTAGGAG+AGG | + | chr3_4:12935427-12935446 | Msa0490990:intron | 45.0% | |
| CCAACAATGACCTACGTCTA+AGG | - | chr3_4:12935712-12935731 | None:intergenic | 45.0% | |
| CCTTAGACGTAGGTCATTGT+TGG | + | chr3_4:12935709-12935728 | Msa0490990:intron | 45.0% | |
| !! | AGGTCATTGTTGGGTTGAAG+TGG | + | chr3_4:12935719-12935738 | Msa0490990:intron | 45.0% |
| ATTGTGCAAAATGGGGAAGC+GGG | + | chr3_4:12935969-12935988 | Msa0490990:CDS | 45.0% | |
| AAATTCATATGCCGCTGCCT+CGG | - | chr3_4:12936036-12936055 | None:intergenic | 45.0% | |
| AGGATGCGGTCACTAATGTA+TGG | + | chr3_4:12936485-12936504 | Msa0490990:intron | 45.0% | |
| GTCCAACAAATACTCCCAAC+GGG | - | chr3_4:12936703-12936722 | None:intergenic | 45.0% | |
| TTCCATGGACAACCCTTTCA+AGG | - | chr3_4:12937252-12937271 | None:intergenic | 45.0% | |
| ! | TTTCCGGCTTGTACAAGCAT+AGG | - | chr3_4:12937346-12937365 | None:intergenic | 45.0% |
| TAATAAGGAGCGGACGGTAA+TGG | + | chr3_4:12937477-12937496 | Msa0490990:intron | 45.0% | |
| AATAAGGAGCGGACGGTAAT+GGG | + | chr3_4:12937478-12937497 | Msa0490990:intron | 45.0% | |
| !! | GACGGTAATGGGGAATCTTA+TGG | + | chr3_4:12937489-12937508 | Msa0490990:intron | 45.0% |
| TCAACACTCTGGATGTTGGT+GGG | + | chr3_4:12937923-12937942 | Msa0490990:CDS | 45.0% | |
| GTAAATGACACTGCAACGAC+TGG | - | chr3_4:12938011-12938030 | None:intergenic | 45.0% | |
| !! | CGTTGCAGTGTCATTTACTC+AGG | + | chr3_4:12938013-12938032 | Msa0490990:intron | 45.0% |
| AAAGACCATCACATCCTGAG+TGG | + | chr3_4:12938072-12938091 | Msa0490990:intron | 45.0% | |
| AGTCTAATCACCATCCACTC+AGG | - | chr3_4:12938089-12938108 | None:intergenic | 45.0% | |
| GTTGAGGGGAGAACATTTCT+TGG | - | chr3_4:12938151-12938170 | None:intergenic | 45.0% | |
| AGGCTAGACAGACTCTGAAT+TGG | - | chr3_4:12938467-12938486 | None:intergenic | 45.0% | |
| ! | TGAGCAAAAGCCTGCAGTTT+TGG | - | chr3_4:12938515-12938534 | None:intergenic | 45.0% |
| CTACTTCAGCTATCACTAGG+TGG | + | chr3_4:12938590-12938609 | Msa0490990:intron | 45.0% | |
| ACTTCAGCTATCACTAGGTG+GGG | + | chr3_4:12938592-12938611 | Msa0490990:intron | 45.0% | |
| ! | GAGTTGCGAATTTGAGGTGA+TGG | + | chr3_4:12938736-12938755 | Msa0490990:intron | 45.0% |
| ! | GGCGACAATCTGAAATCTCA+AGG | - | chr3_4:12938894-12938913 | None:intergenic | 45.0% |
| CTTCTGGTAAGGATTCAAGC+CGG | - | chr3_4:12938915-12938934 | None:intergenic | 45.0% | |
| GATAGTCACTGCTGAAAGAG+AGG | - | chr3_4:12938950-12938969 | None:intergenic | 45.0% | |
| ATGCAAACTCCACTCTAACC+TGG | - | chr3_4:12939995-12940014 | None:intergenic | 45.0% | |
| TGGCAGAATTGCTGAAGTGT+GGG | - | chr3_4:12940060-12940079 | None:intergenic | 45.0% | |
| CCAGCCATCACTAGAATTTC+TGG | - | chr3_4:12940080-12940099 | None:intergenic | 45.0% | |
| CCAGAAATTCTAGTGATGGC+TGG | + | chr3_4:12940077-12940096 | Msa0490990:CDS | 45.0% | |
| TTCTAGTGATGGCTGGTGAT+AGG | + | chr3_4:12940084-12940103 | Msa0490990:CDS | 45.0% | |
| ATGGCTGGTGATAGGAATGA+GGG | + | chr3_4:12940092-12940111 | Msa0490990:CDS | 45.0% | |
| GTGTGGTCCTTTCGTTTAGT+AGG | - | chr3_4:12940125-12940144 | None:intergenic | 45.0% | |
| TGTGGACAGGCCCAAAAAAA+AGG | + | chr3_4:12940155-12940174 | Msa0490990:CDS | 45.0% | |
| !!! | TTAACTTTATTATTTTTTTA+AGG | + | chr3_4:12935876-12935895 | Msa0490990:intron | 5.0% |
| GAAACGCTACTCATATGCGG+CGG | - | chr3_4:12935064-12935083 | None:intergenic | 50.0% | |
| CCGCATATGAGTAGCGTTTC+AGG | + | chr3_4:12935064-12935083 | Msa0490990:CDS | 50.0% | |
| ! | CAGTTTGTAGGAGAGGTGTG+AGG | + | chr3_4:12935434-12935453 | Msa0490990:intron | 50.0% |
| ! | GAGAGGTGTGAGGCAAACTA+GGG | + | chr3_4:12935444-12935463 | Msa0490990:intron | 50.0% |
| GAAGTTTGAATCCGAGGCAG+CGG | + | chr3_4:12936022-12936041 | Msa0490990:CDS | 50.0% | |
| GGGGAGAGTAGAAACCAGAA+CGG | + | chr3_4:12936205-12936224 | Msa0490990:CDS | 50.0% | |
| GGGAGAGTAGAAACCAGAAC+GGG | + | chr3_4:12936206-12936225 | Msa0490990:CDS | 50.0% | |
| AACGGGATGTGATGCACGTA+TGG | + | chr3_4:12936223-12936242 | Msa0490990:CDS | 50.0% | |
| GGAGTATGAAAATGCCCTGG+CGG | - | chr3_4:12936323-12936342 | None:intergenic | 50.0% | |
| ! | CGAGGAGTATGAAAATGCCC+TGG | - | chr3_4:12936326-12936345 | None:intergenic | 50.0% |
| GATATTTGTCGATGGGAGCG+AGG | - | chr3_4:12936344-12936363 | None:intergenic | 50.0% | |
| !! | GATGGTGGGATAGATGCTGT+TGG | + | chr3_4:12936446-12936465 | Msa0490990:CDS | 50.0% |
| CACCTTGAAAGGGTTGTCCA+TGG | + | chr3_4:12937247-12937266 | Msa0490990:CDS | 50.0% | |
| GCTCCTATGCTTGTACAAGC+CGG | + | chr3_4:12937340-12937359 | Msa0490990:CDS | 50.0% | |
| ATAAGGAGCGGACGGTAATG+GGG | + | chr3_4:12937479-12937498 | Msa0490990:intron | 50.0% | |
| GGAAGGGCAACCTATTGAAC+TGG | + | chr3_4:12937672-12937691 | Msa0490990:intron | 50.0% | |
| GTCAACACTCTGGATGTTGG+TGG | + | chr3_4:12937922-12937941 | Msa0490990:CDS | 50.0% | |
| CAACACTCTGGATGTTGGTG+GGG | + | chr3_4:12937924-12937943 | Msa0490990:CDS | 50.0% | |
| ! | CAGGTCACAGCATCGAAAAG+AGG | + | chr3_4:12938032-12938051 | Msa0490990:intron | 50.0% |
| ACCATCACATCCTGAGTGGA+TGG | + | chr3_4:12938076-12938095 | Msa0490990:intron | 50.0% | |
| ACCATCCACTCAGGATGTGA+TGG | - | chr3_4:12938080-12938099 | None:intergenic | 50.0% | |
| GGGGAGAACATTTCTTGGGT+AGG | - | chr3_4:12938146-12938165 | None:intergenic | 50.0% | |
| GTATGGACGACCAAAACTGC+AGG | + | chr3_4:12938502-12938521 | Msa0490990:intron | 50.0% | |
| AGGCAGTCCTTCTTCTGGTA+AGG | - | chr3_4:12938926-12938945 | None:intergenic | 50.0% | |
| GTCACTGCTGAAAGAGAGGA+AGG | - | chr3_4:12938946-12938965 | None:intergenic | 50.0% | |
| ACAAGCAAGCTGTCAGAGCA+AGG | + | chr3_4:12938986-12939005 | Msa0490990:intron | 50.0% | |
| GGCAATGCTCACCAATGCAA+TGG | - | chr3_4:12939125-12939144 | None:intergenic | 50.0% | |
| CATGGCATGGTATTCAGCAG+GGG | - | chr3_4:12939181-12939200 | None:intergenic | 50.0% | |
| GCATGGCATGGTATTCAGCA+GGG | - | chr3_4:12939182-12939201 | None:intergenic | 50.0% | |
| TGCATGGCATGGTATTCAGC+AGG | - | chr3_4:12939183-12939202 | None:intergenic | 50.0% | |
| GCGTCCATGAGAGTTCTTGT+TGG | + | chr3_4:12939607-12939626 | Msa0490990:intron | 50.0% | |
| ! | GAGAAGATAGACGGCTAGCT+AGG | + | chr3_4:12939752-12939771 | Msa0490990:intron | 50.0% |
| CGATGATGTGAGCCGAAACA+CGG | - | chr3_4:12939805-12939824 | None:intergenic | 50.0% | |
| TGTTTCGGCTCACATCATCG+AGG | + | chr3_4:12939805-12939824 | Msa0490990:intron | 50.0% | |
| CTGGCAGAATTGCTGAAGTG+TGG | - | chr3_4:12940061-12940080 | None:intergenic | 50.0% | |
| GATGGCTGGTGATAGGAATG+AGG | + | chr3_4:12940091-12940110 | Msa0490990:CDS | 50.0% | |
| AAACGAAAGGACCACACTCG+AGG | + | chr3_4:12940128-12940147 | Msa0490990:CDS | 50.0% | |
| GTATTCTCTTGGGAGCCACT+TGG | + | chr3_4:12940293-12940312 | Msa0490990:intron | 50.0% | |
| GGTTGGGTGTTCGGAAGGAA+CGG | - | chr3_4:12935043-12935062 | None:intergenic | 55.0% | |
| ATATGCGGCGGTTGGGTGTT+CGG | - | chr3_4:12935052-12935071 | None:intergenic | 55.0% | |
| GCTACTCATATGCGGCGGTT+GGG | - | chr3_4:12935059-12935078 | None:intergenic | 55.0% | |
| ! | GGAGAGGTGTGAGGCAAACT+AGG | + | chr3_4:12935443-12935462 | Msa0490990:intron | 55.0% |
| GACCTCTCTCCCTTAGACGT+AGG | + | chr3_4:12935699-12935718 | Msa0490990:intron | 55.0% | |
| GACCTACGTCTAAGGGAGAG+AGG | - | chr3_4:12935704-12935723 | None:intergenic | 55.0% | |
| ACGTGCATCACATCCCGTTC+TGG | - | chr3_4:12936222-12936241 | None:intergenic | 55.0% | |
| GTTGTAGCGGCGGATGAATC+TGG | + | chr3_4:12936383-12936402 | Msa0490990:CDS | 55.0% | |
| !! | CGCCCGTTGGGAGTATTTGT+TGG | + | chr3_4:12936698-12936717 | Msa0490990:intron | 55.0% |
| TTGGGAGAGAACTAGCCGAG+AGG | - | chr3_4:12938293-12938312 | None:intergenic | 55.0% | |
| GAGGAAGGCAGTCCTTCTTC+TGG | - | chr3_4:12938931-12938950 | None:intergenic | 55.0% | |
| AGCAAGCTGTCAGAGCAAGG+AGG | + | chr3_4:12938989-12939008 | Msa0490990:intron | 55.0% | |
| GCAAGCTGTCAGAGCAAGGA+GGG | + | chr3_4:12938990-12939009 | Msa0490990:intron | 55.0% | |
| GACCACACTCGAGGAGTTTG+TGG | + | chr3_4:12940137-12940156 | Msa0490990:CDS | 55.0% | |
| GTCCACAAACTCCTCGAGTG+TGG | - | chr3_4:12940142-12940161 | None:intergenic | 55.0% | |
| CACTCGAGGAGTTTGTGGAC+AGG | + | chr3_4:12940142-12940161 | Msa0490990:CDS | 55.0% | |
| CTCTTGGGAGCCACTTGGTT+AGG | + | chr3_4:12940298-12940317 | Msa0490990:intron | 55.0% | |
| TGGGTGTTCGGAAGGAACGG+CGG | - | chr3_4:12935040-12935059 | None:intergenic | 60.0% | |
| CGCTACTCATATGCGGCGGT+TGG | - | chr3_4:12935060-12935079 | None:intergenic | 60.0% | |
| ! | TCTGGATGTTGGTGGGGAGC+AGG | + | chr3_4:12937930-12937949 | Msa0490990:CDS | 60.0% |
| ! | CTGGATGTTGGTGGGGAGCA+GGG | + | chr3_4:12937931-12937950 | Msa0490990:CDS | 60.0% |
| CAGAGCAAGGAGGGACAGAG+TGG | + | chr3_4:12938999-12939018 | Msa0490990:intron | 60.0% | |
| GCTGAGCTGGCAGCGAACTT+TGG | + | chr3_4:12940234-12940253 | Msa0490990:intron | 60.0% | |
| AACGGCGGCACTGCACGATG+TGG | - | chr3_4:12935025-12935044 | None:intergenic | 65.0% | |
| GCGGCGGTTGGGTGTTCGGA+AGG | - | chr3_4:12935048-12935067 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 12934974 | 12940441 | 12934974 | ID=Msa0490990;Name=Msa0490990 |
| chr3_4 | mRNA | 12934974 | 12940441 | 12934974 | ID=Msa0490990-mRNA-1;Parent=Msa0490990;Name=Msa0490990-mRNA-1;_AED=0.25;_eAED=0.27;_QI=0|0.11|0|0.9|0.11|0.1|10|0|476 |
| chr3_4 | exon | 12934974 | 12935085 | 12934974 | ID=Msa0490990-mRNA-1:exon:3974;Parent=Msa0490990-mRNA-1 |
| chr3_4 | exon | 12935898 | 12936063 | 12935898 | ID=Msa0490990-mRNA-1:exon:3975;Parent=Msa0490990-mRNA-1 |
| chr3_4 | exon | 12936073 | 12936269 | 12936073 | ID=Msa0490990-mRNA-1:exon:3976;Parent=Msa0490990-mRNA-1 |
| chr3_4 | exon | 12936297 | 12936467 | 12936297 | ID=Msa0490990-mRNA-1:exon:3977;Parent=Msa0490990-mRNA-1 |
| chr3_4 | exon | 12937002 | 12937157 | 12937002 | ID=Msa0490990-mRNA-1:exon:3978;Parent=Msa0490990-mRNA-1 |
| chr3_4 | exon | 12937233 | 12937459 | 12937233 | ID=Msa0490990-mRNA-1:exon:3979;Parent=Msa0490990-mRNA-1 |
| chr3_4 | exon | 12937814 | 12937952 | 12937814 | ID=Msa0490990-mRNA-1:exon:3980;Parent=Msa0490990-mRNA-1 |
| chr3_4 | exon | 12939902 | 12939909 | 12939902 | ID=Msa0490990-mRNA-1:exon:3981;Parent=Msa0490990-mRNA-1 |
| chr3_4 | exon | 12939996 | 12940196 | 12939996 | ID=Msa0490990-mRNA-1:exon:3982;Parent=Msa0490990-mRNA-1 |
| chr3_4 | exon | 12940391 | 12940441 | 12940391 | ID=Msa0490990-mRNA-1:exon:3983;Parent=Msa0490990-mRNA-1 |
| chr3_4 | CDS | 12934974 | 12935085 | 12934974 | ID=Msa0490990-mRNA-1:cds;Parent=Msa0490990-mRNA-1 |
| chr3_4 | CDS | 12935898 | 12936063 | 12935898 | ID=Msa0490990-mRNA-1:cds;Parent=Msa0490990-mRNA-1 |
| chr3_4 | CDS | 12936073 | 12936269 | 12936073 | ID=Msa0490990-mRNA-1:cds;Parent=Msa0490990-mRNA-1 |
| chr3_4 | CDS | 12936297 | 12936467 | 12936297 | ID=Msa0490990-mRNA-1:cds;Parent=Msa0490990-mRNA-1 |
| chr3_4 | CDS | 12937002 | 12937157 | 12937002 | ID=Msa0490990-mRNA-1:cds;Parent=Msa0490990-mRNA-1 |
| chr3_4 | CDS | 12937233 | 12937459 | 12937233 | ID=Msa0490990-mRNA-1:cds;Parent=Msa0490990-mRNA-1 |
| chr3_4 | CDS | 12937814 | 12937952 | 12937814 | ID=Msa0490990-mRNA-1:cds;Parent=Msa0490990-mRNA-1 |
| chr3_4 | CDS | 12939902 | 12939909 | 12939902 | ID=Msa0490990-mRNA-1:cds;Parent=Msa0490990-mRNA-1 |
| chr3_4 | CDS | 12939996 | 12940196 | 12939996 | ID=Msa0490990-mRNA-1:cds;Parent=Msa0490990-mRNA-1 |
| chr3_4 | CDS | 12940391 | 12940441 | 12940391 | ID=Msa0490990-mRNA-1:cds;Parent=Msa0490990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
