Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503320 | XP_003600215.1 | 93.271 | 431 | 11 | 1 | 1 | 431 | 1 | 413 | 0.0 | 800 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503320 | sp|Q42545|FTSZ1_ARATH | 79.188 | 394 | 62 | 2 | 40 | 431 | 58 | 433 | 0.0 | 555 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503320 | G7J1F3 | 93.271 | 431 | 11 | 1 | 1 | 431 | 1 | 413 | 0.0 | 800 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0503320 | Msa1345030 | -0.820280 | 7.455177e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503320 | MtrunA17_Chr3g0100581 | 93.271 | 431 | 11 | 1 | 1 | 431 | 1 | 413 | 0.0 | 800 |
| Msa0503320 | MtrunA17_Chr5g0445051 | 80.186 | 429 | 65 | 3 | 5 | 431 | 9 | 419 | 0.0 | 595 |
| Msa0503320 | MtrunA17_Chr1g0178661 | 56.051 | 314 | 118 | 2 | 68 | 379 | 135 | 430 | 2.39e-107 | 325 |
| Msa0503320 | MtrunA17_Chr7g0266231 | 56.869 | 313 | 115 | 2 | 69 | 379 | 149 | 443 | 3.36e-107 | 325 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503320 | AT5G55280.1 | 79.188 | 394 | 62 | 2 | 40 | 431 | 58 | 433 | 0.0 | 555 |
| Msa0503320 | AT3G52750.3 | 55.932 | 354 | 130 | 4 | 33 | 379 | 88 | 422 | 1.18e-112 | 339 |
| Msa0503320 | AT3G52750.2 | 55.932 | 354 | 130 | 4 | 33 | 379 | 88 | 422 | 1.18e-112 | 339 |
| Msa0503320 | AT3G52750.1 | 55.932 | 354 | 130 | 4 | 33 | 379 | 88 | 422 | 1.18e-112 | 339 |
| Msa0503320 | AT2G36250.4 | 55.493 | 355 | 130 | 4 | 33 | 379 | 11 | 345 | 1.61e-111 | 333 |
| Msa0503320 | AT2G36250.2 | 55.493 | 355 | 130 | 4 | 33 | 379 | 92 | 426 | 1.50e-110 | 334 |
| Msa0503320 | AT2G36250.3 | 55.493 | 355 | 130 | 4 | 33 | 379 | 92 | 426 | 1.50e-110 | 334 |
| Msa0503320 | AT2G36250.1 | 55.493 | 355 | 130 | 4 | 33 | 379 | 92 | 426 | 1.50e-110 | 334 |
| Msa0503320 | AT3G52750.4 | 55.311 | 273 | 96 | 4 | 33 | 298 | 88 | 341 | 6.94e-79 | 248 |
Find 110 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCTGCAAATATTATATT+TGG | 0.072275 | 3_4:+46267546 | Msa0503320:CDS |
| TTGATGTTTGTTTGCTTTCT+TGG | 0.139379 | 3_4:-46267701 | None:intergenic |
| AGAGGAAGAGAGTAGTTTAT+TGG | 0.194747 | 3_4:-46264248 | None:intergenic |
| GCTACTTTGGCACCTTTAAT+TGG | 0.202470 | 3_4:+46267039 | Msa0503320:CDS |
| GGGAGAAGAATTGGGAATTT+AGG | 0.204858 | 3_4:-46264129 | None:intergenic |
| TACTGGTGGTAATCCACTTT+TGG | 0.220317 | 3_4:+46265804 | Msa0503320:CDS |
| ACAAACATCAACTCCGTTAA+AGG | 0.232132 | 3_4:+46267713 | Msa0503320:CDS |
| GAGGAAGAGAGTAGTTTATT+GGG | 0.247789 | 3_4:-46264247 | None:intergenic |
| AAATTCATTAAGCTTGATTT+AGG | 0.254623 | 3_4:+46267841 | Msa0503320:three_prime_UTR |
| CATGATTGGTTGCGGATTAC+AGG | 0.255120 | 3_4:+46264441 | Msa0503320:CDS |
| CTGAGAGTAGTGTGAGAAAT+TGG | 0.276378 | 3_4:-46264283 | None:intergenic |
| TGAATAGATGATCCAATTAA+AGG | 0.277831 | 3_4:-46267051 | None:intergenic |
| GATCTGTAAGTAGCATCTTT+TGG | 0.290387 | 3_4:-46267641 | None:intergenic |
| GGAGAAGAATTGGGAATTTA+GGG | 0.291685 | 3_4:-46264128 | None:intergenic |
| GTAGTTTATTGGGGTTATTA+AGG | 0.292571 | 3_4:-46264237 | None:intergenic |
| TTGGGAAATGGGAGAAGAAT+TGG | 0.298426 | 3_4:-46264138 | None:intergenic |
| CTTCTGCAAATATTATATTT+GGG | 0.298466 | 3_4:+46267547 | Msa0503320:CDS |
| CACAGTAGGAATAACATAAA+AGG | 0.334937 | 3_4:-46265355 | None:intergenic |
| ATTGGAATTGGAATTGGAAT+TGG | 0.338715 | 3_4:-46264157 | None:intergenic |
| ATGGGTGGAGGCACGGGGTC+TGG | 0.341711 | 3_4:+46265907 | Msa0503320:CDS |
| GATTCGAATGAACATGTAAC+TGG | 0.347305 | 3_4:-46264355 | None:intergenic |
| GCTTGATTTAGGTATCATTC+TGG | 0.348644 | 3_4:+46267852 | Msa0503320:three_prime_UTR |
| TTGGAATTGGAATTGGGAAA+TGG | 0.361162 | 3_4:-46264150 | None:intergenic |
| GCTGGTATGGGTGGAGGCAC+GGG | 0.371048 | 3_4:+46265901 | Msa0503320:CDS |
| ACATATCCCTTTAGCTTTGA+AGG | 0.373592 | 3_4:+46265991 | Msa0503320:CDS |
| GGGATAGTATATAATATTAC+TGG | 0.374649 | 3_4:+46267084 | Msa0503320:CDS |
| TTGGAATTGGAATTGGAATT+GGG | 0.380798 | 3_4:-46264156 | None:intergenic |
| TAGTTTATTGGGGTTATTAA+GGG | 0.382771 | 3_4:-46264236 | None:intergenic |
| AGGAAAAGACATAACTCTTC+AGG | 0.382999 | 3_4:+46267107 | Msa0503320:CDS |
| AGTGTTTGTAACTGCTGGTA+TGG | 0.388284 | 3_4:+46265888 | Msa0503320:CDS |
| GAGCTCCTGACTCGTGGATT+AGG | 0.391281 | 3_4:+46265321 | Msa0503320:CDS |
| TCATCTATTCAGTCAGCTAC+TGG | 0.395016 | 3_4:+46267063 | Msa0503320:CDS |
| TGGAATTGGAATTGGGAAAT+GGG | 0.397240 | 3_4:-46264149 | None:intergenic |
| TCAATAAGCTTTGCGGCCCT+TGG | 0.400977 | 3_4:-46267663 | None:intergenic |
| GTTGTTGGTGTTGGTGGTGG+TGG | 0.403791 | 3_4:+46264400 | Msa0503320:CDS |
| GATTTAGTGTTTGTAACTGC+TGG | 0.404828 | 3_4:+46265883 | Msa0503320:CDS |
| TGCTGGTATGGGTGGAGGCA+CGG | 0.410369 | 3_4:+46265900 | Msa0503320:CDS |
| ACTATTGCTAATGCTCTTCA+TGG | 0.413549 | 3_4:+46265856 | Msa0503320:CDS |
| TGGGAAATGGGAGAAGAATT+GGG | 0.419576 | 3_4:-46264137 | None:intergenic |
| TTATTCCTACTGTGCCCAAT+TGG | 0.419617 | 3_4:+46265364 | Msa0503320:CDS |
| TTTGATATCCTGGCCACGAC+TGG | 0.424606 | 3_4:-46265937 | None:intergenic |
| TTGCGTCCTTCAAAGCTAAA+GGG | 0.429034 | 3_4:-46265997 | None:intergenic |
| TTTGCGTCCTTCAAAGCTAA+AGG | 0.434956 | 3_4:-46265998 | None:intergenic |
| ATTAAAGTTGTTGGTGTTGG+TGG | 0.435290 | 3_4:+46264394 | Msa0503320:CDS |
| GAAAAGTTTGAGGCCTTTAA+CGG | 0.437127 | 3_4:-46267726 | None:intergenic |
| GACTCTGGAACTGCAATGCT+TGG | 0.437859 | 3_4:+46266967 | Msa0503320:CDS |
| GGAAGTGAATAGAGTTTCTC+AGG | 0.438800 | 3_4:+46267128 | Msa0503320:CDS |
| AAAGTTGTTGGTGTTGGTGG+TGG | 0.439587 | 3_4:+46264397 | Msa0503320:CDS |
| ATGTCAAGCAGACGATCATT+TGG | 0.443168 | 3_4:-46266577 | None:intergenic |
| TGTTTGCTTTCTTGGCCCAC+AGG | 0.447832 | 3_4:-46267693 | None:intergenic |
| AATGCTAAGATTAAAGTTGT+TGG | 0.448048 | 3_4:+46264385 | Msa0503320:CDS |
| TGGCTTTAAACGACGTCGCA+GGG | 0.453955 | 3_4:-46264335 | None:intergenic |
| AGCTGCAGAACAAGCTACTT+TGG | 0.460703 | 3_4:+46267026 | Msa0503320:CDS |
| AGGAAGAGAGTAGTTTATTG+GGG | 0.464462 | 3_4:-46264246 | None:intergenic |
| AGGACGCAAAAGATCCTTGC+AGG | 0.465101 | 3_4:+46266011 | Msa0503320:CDS |
| GTGCTGCTCCAGTCGTGGCC+AGG | 0.467776 | 3_4:+46265929 | Msa0503320:CDS |
| AATGCTGTTAACCGCATGAT+TGG | 0.472008 | 3_4:+46264427 | Msa0503320:CDS |
| TCCGACCTAATCCACGAGTC+AGG | 0.479972 | 3_4:-46265326 | None:intergenic |
| TCTGGTTTGTCCCTCGATTG+TGG | 0.484970 | 3_4:+46267870 | Msa0503320:three_prime_UTR |
| CCCATCTTTCTACAGATACC+TGG | 0.495617 | 3_4:+46266901 | Msa0503320:intron |
| GTGTTTGTAACTGCTGGTAT+GGG | 0.496706 | 3_4:+46265889 | Msa0503320:CDS |
| TGATGATCAAACGCCTCTTA+CGG | 0.497471 | 3_4:+46266603 | Msa0503320:CDS |
| AAGATTAAAGTTGTTGGTGT+TGG | 0.497473 | 3_4:+46264391 | Msa0503320:CDS |
| AGACTGAAAGCATCCGTAAG+AGG | 0.500808 | 3_4:-46266616 | None:intergenic |
| AAATTGGTTGATAGAGATGC+AGG | 0.504381 | 3_4:+46265781 | Msa0503320:intron |
| TTGGAAGGACTGTGAGAAGC+CGG | 0.515580 | 3_4:-46267622 | None:intergenic |
| AACTGTTGATGAAAAGTTTG+AGG | 0.519155 | 3_4:-46267736 | None:intergenic |
| TAATCTGTCAATAAGCTTTG+CGG | 0.521014 | 3_4:-46267670 | None:intergenic |
| TATAATATTTGCAGAAGGAT+CGG | 0.522160 | 3_4:-46267541 | None:intergenic |
| GTTCTGCAGCTTCTTCTGCA+CGG | 0.522203 | 3_4:-46267014 | None:intergenic |
| TTCTGCAAATATTATATTTG+GGG | 0.523497 | 3_4:+46267548 | Msa0503320:CDS |
| CTGGTATGGGTGGAGGCACG+GGG | 0.523953 | 3_4:+46265902 | Msa0503320:CDS |
| TTGTTGACGAGCGCTACAGC+GGG | 0.527049 | 3_4:+46267574 | Msa0503320:CDS |
| CTTGGAGTAGGTGTTTCCTC+TGG | 0.532475 | 3_4:+46266985 | Msa0503320:CDS |
| GTCTGGTGCTGCTCCAGTCG+TGG | 0.534394 | 3_4:+46265924 | Msa0503320:CDS |
| GTTAACCGCATGATTGGTTG+CGG | 0.538243 | 3_4:+46264433 | Msa0503320:CDS |
| CTGGCTTTAAACGACGTCGC+AGG | 0.540320 | 3_4:-46264336 | None:intergenic |
| GTAACTGCTGGTATGGGTGG+AGG | 0.550166 | 3_4:+46265895 | Msa0503320:CDS |
| AATTGGAGTGGGAATTGAAG+AGG | 0.550768 | 3_4:-46264266 | None:intergenic |
| GTAGTGTGAGAAATTGGAGT+GGG | 0.552478 | 3_4:-46264277 | None:intergenic |
| CGAAAAGCTGCAGCAGAATG+TGG | 0.555459 | 3_4:+46266537 | Msa0503320:CDS |
| CATGTGACTCTCATTGCCAC+CGG | 0.556072 | 3_4:+46267603 | Msa0503320:CDS |
| CATCTATTCAGTCAGCTACT+GGG | 0.556322 | 3_4:+46267064 | Msa0503320:CDS |
| GAAGCTGGTTACTTAACTGT+TGG | 0.556775 | 3_4:+46265961 | Msa0503320:CDS |
| GTTGATAGAGATGCAGGTAC+TGG | 0.565358 | 3_4:+46265787 | Msa0503320:intron |
| GGATAGGTAATTTGCCTGCA+AGG | 0.569817 | 3_4:-46266025 | None:intergenic |
| AACTTCCAATTGGGCACAGT+AGG | 0.570604 | 3_4:-46265369 | None:intergenic |
| GCCAGGATATCAAAAGAAGC+TGG | 0.571214 | 3_4:+46265946 | Msa0503320:CDS |
| AGATGCTACTTACAGATCCA+AGG | 0.572904 | 3_4:+46267646 | Msa0503320:CDS |
| GTTGTTGACGAGCGCTACAG+CGG | 0.575320 | 3_4:+46267573 | Msa0503320:CDS |
| TTTGTAACTGCTGGTATGGG+TGG | 0.578377 | 3_4:+46265892 | Msa0503320:CDS |
| ATTGGAGAGCTCCTGACTCG+TGG | 0.581021 | 3_4:+46265315 | Msa0503320:CDS |
| GATACCTGGTCTTGTAAATG+TGG | 0.581169 | 3_4:+46266915 | Msa0503320:intron |
| AAAGCGGTGATGAAAGACTC+TGG | 0.581555 | 3_4:+46266952 | Msa0503320:CDS |
| GGAACTGCAATGCTTGGAGT+AGG | 0.595218 | 3_4:+46266973 | Msa0503320:CDS |
| AAATCCACATTTACAAGACC+AGG | 0.597382 | 3_4:-46266919 | None:intergenic |
| GCTTATTGACAGATTACCTG+TGG | 0.601239 | 3_4:+46267677 | Msa0503320:CDS |
| CCAAATATAATATTTGCAGA+AGG | 0.605303 | 3_4:-46267546 | None:intergenic |
| TCCTGACTCGTGGATTAGGT+CGG | 0.626096 | 3_4:+46265325 | Msa0503320:CDS |
| AAAACATTCTCCACAATCGA+GGG | 0.629418 | 3_4:-46267880 | None:intergenic |
| GAGAAGAATTGGGAATTTAG+GGG | 0.633526 | 3_4:-46264127 | None:intergenic |
| GATAGAGATGCAGGTACTGG+TGG | 0.636281 | 3_4:+46265790 | Msa0503320:intron |
| GATGCTACTTACAGATCCAA+GGG | 0.642451 | 3_4:+46267647 | Msa0503320:CDS |
| GGCTTTAAACGACGTCGCAG+GGG | 0.643103 | 3_4:-46264334 | None:intergenic |
| ATAGTATATAATATTACTGG+AGG | 0.648111 | 3_4:+46267087 | Msa0503320:CDS |
| CTTATTGACAGATTACCTGT+GGG | 0.675733 | 3_4:+46267678 | Msa0503320:CDS |
| GAAGGACTGTGAGAAGCCGG+TGG | 0.689459 | 3_4:-46267619 | None:intergenic |
| AGTAGTGTGAGAAATTGGAG+TGG | 0.704462 | 3_4:-46264278 | None:intergenic |
| GTAATCCGCAACCAATCATG+CGG | 0.705907 | 3_4:-46264438 | None:intergenic |
| TGTTGACGAGCGCTACAGCG+GGG | 0.759544 | 3_4:+46267575 | Msa0503320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAGTGTATTTTATTAA+TGG | + | chr3_4:46264522-46264541 | Msa0503320:intron | 10.0% |
| !!! | TTTTAGTGTATTTTATTAAT+GGG | + | chr3_4:46264523-46264542 | Msa0503320:intron | 10.0% |
| !!! | TATTATTCTTTTTTTAATCA+GGG | + | chr3_4:46265222-46265241 | Msa0503320:intron | 10.0% |
| !! | ATATAACTATTTCATATAAA+GGG | - | chr3_4:46266049-46266068 | None:intergenic | 10.0% |
| !!! | TTGCATTTTAGTAATTAAAA+TGG | + | chr3_4:46264724-46264743 | Msa0503320:intron | 15.0% |
| !!! | GTATTATTCTTTTTTTAATC+AGG | + | chr3_4:46265221-46265240 | Msa0503320:intron | 15.0% |
| !! | CATATAACTATTTCATATAA+AGG | - | chr3_4:46266050-46266069 | None:intergenic | 15.0% |
| !! | CTTTATATGAAATAGTTATA+TGG | + | chr3_4:46266048-46266067 | Msa0503320:intron | 15.0% |
| !!! | TAGTGTTAATTAATAGTTTT+AGG | - | chr3_4:46266093-46266112 | None:intergenic | 15.0% |
| !! | TTTGAATAATGTTATCTTAT+TGG | + | chr3_4:46266863-46266882 | Msa0503320:intron | 15.0% |
| !! | TTGAATAATGTTATCTTATT+GGG | + | chr3_4:46266864-46266883 | Msa0503320:intron | 15.0% |
| !!! | ACATTTTTTGTTGTTAATTG+TGG | - | chr3_4:46264207-46264226 | None:intergenic | 20.0% |
| !! | TTTGAATGCAAATTATTTAG+TGG | + | chr3_4:46264593-46264612 | Msa0503320:intron | 20.0% |
| !!! | GGATATTTTTTATCATATCA+TGG | + | chr3_4:46264701-46264720 | Msa0503320:intron | 20.0% |
| !! | AGAGAAAAATGCATAAAAAT+AGG | - | chr3_4:46265078-46265097 | None:intergenic | 20.0% |
| !! | ACATATAAAAACTTCCAATT+GGG | - | chr3_4:46265381-46265400 | None:intergenic | 20.0% |
| !! | AACATATAAAAACTTCCAAT+TGG | - | chr3_4:46265382-46265401 | None:intergenic | 20.0% |
| !! | TTAAATTCAATAGCTGATAT+AGG | - | chr3_4:46265439-46265458 | None:intergenic | 20.0% |
| !!! | TAATAAAGTAAATGCCATTT+TGG | + | chr3_4:46265540-46265559 | Msa0503320:intron | 20.0% |
| !! | TTTCAACAAAAATGTGAATT+AGG | + | chr3_4:46265640-46265659 | Msa0503320:intron | 20.0% |
| !! | TATTTCAAACAATTCATTGT+TGG | + | chr3_4:46265706-46265725 | Msa0503320:intron | 20.0% |
| !! | AATAGGAAATGTCAATAAAT+AGG | - | chr3_4:46266706-46266725 | None:intergenic | 20.0% |
| !! | ATTTATTGACATTTCCTATT+TGG | + | chr3_4:46266706-46266725 | Msa0503320:intron | 20.0% |
| !!! | TTTAGTTTACACAACTAAAT+TGG | + | chr3_4:46266748-46266767 | Msa0503320:intron | 20.0% |
| !! | AATGAAATGTTCAATAATGA+TGG | - | chr3_4:46266829-46266848 | None:intergenic | 20.0% |
| !! | TGAATAATGTTATCTTATTG+GGG | + | chr3_4:46266865-46266884 | Msa0503320:intron | 20.0% |
| !! | ATAGTATATAATATTACTGG+AGG | + | chr3_4:46267087-46267106 | Msa0503320:CDS | 20.0% |
| !! | GCTTATTTGAACTTATTTAT+TGG | + | chr3_4:46267224-46267243 | Msa0503320:intron | 20.0% |
| !!! | ATGTATCAGTTTTCTAAAAT+CGG | + | chr3_4:46267490-46267509 | Msa0503320:intron | 20.0% |
| !! | CTAAAATCGGTAATATTTAT+AGG | + | chr3_4:46267503-46267522 | Msa0503320:intron | 20.0% |
| !! | CTTCTGCAAATATTATATTT+GGG | + | chr3_4:46267547-46267566 | Msa0503320:CDS | 20.0% |
| !! | TTCTGCAAATATTATATTTG+GGG | + | chr3_4:46267548-46267567 | Msa0503320:CDS | 20.0% |
| !! | ACGAAACTACTATAAAAAAA+GGG | - | chr3_4:46267814-46267833 | None:intergenic | 20.0% |
| !! | TACGAAACTACTATAAAAAA+AGG | - | chr3_4:46267815-46267834 | None:intergenic | 20.0% |
| !! | AAATTCATTAAGCTTGATTT+AGG | + | chr3_4:46267841-46267860 | Msa0503320:three_prime_UTR | 20.0% |
| ! | TAGTTTATTGGGGTTATTAA+GGG | - | chr3_4:46264239-46264258 | None:intergenic | 25.0% |
| ! | AATGCTAAGATTAAAGTTGT+TGG | + | chr3_4:46264385-46264404 | Msa0503320:CDS | 25.0% |
| ! | AAATGGTTATTGTTACGATT+TGG | + | chr3_4:46264741-46264760 | Msa0503320:intron | 25.0% |
| ! | TATCAGCTATTGAATTTAAG+TGG | + | chr3_4:46265440-46265459 | Msa0503320:intron | 25.0% |
| ! | TTGTCAATAAAACTCCAAAA+TGG | - | chr3_4:46265557-46265576 | None:intergenic | 25.0% |
| ! | ACAATTGTAATACGTACATA+AGG | - | chr3_4:46265613-46265632 | None:intergenic | 25.0% |
| ! | AACAAAAATGTGAATTAGGA+GGG | + | chr3_4:46265644-46265663 | Msa0503320:intron | 25.0% |
| ! | ACTATTTCATATAAAGGGAT+AGG | - | chr3_4:46266044-46266063 | None:intergenic | 25.0% |
| !!! | TTTAATTTGTTCTAGCATAC+TGG | - | chr3_4:46266118-46266137 | None:intergenic | 25.0% |
| ! | TAAGATTACTGAAATTGTGT+GGG | - | chr3_4:46266160-46266179 | None:intergenic | 25.0% |
| ! | TTAAGATTACTGAAATTGTG+TGG | - | chr3_4:46266161-46266180 | None:intergenic | 25.0% |
| ! | GTTCAAATATTGTGAAATAG+TGG | - | chr3_4:46266281-46266300 | None:intergenic | 25.0% |
| ! | TTGAACTAAATAGTGAATTG+CGG | + | chr3_4:46266295-46266314 | Msa0503320:intron | 25.0% |
| ! | AATTCAAATAGTATGATTCC+AGG | + | chr3_4:46266501-46266520 | Msa0503320:intron | 25.0% |
| ! | TGAATAGATGATCCAATTAA+AGG | - | chr3_4:46267054-46267073 | None:intergenic | 25.0% |
| ! | GGGATAGTATATAATATTAC+TGG | + | chr3_4:46267084-46267103 | Msa0503320:CDS | 25.0% |
| ! | ATATCAACATACATCATGTT+TGG | - | chr3_4:46267450-46267469 | None:intergenic | 25.0% |
| ! | TATAATATTTGCAGAAGGAT+CGG | - | chr3_4:46267544-46267563 | None:intergenic | 25.0% |
| ! | CCAAATATAATATTTGCAGA+AGG | - | chr3_4:46267549-46267568 | None:intergenic | 25.0% |
| ! | CCTTCTGCAAATATTATATT+TGG | + | chr3_4:46267546-46267565 | Msa0503320:CDS | 25.0% |
| !!! | AAACTCTTCTTTTAACTTCT+TGG | + | chr3_4:46267780-46267799 | Msa0503320:exon | 25.0% |
| ! | TCTTCAGAAAAATTAGCTAT+TGG | + | chr3_4:46267911-46267930 | Msa0503320:three_prime_UTR | 25.0% |
| TTGGAATTGGAATTGGAATT+GGG | - | chr3_4:46264159-46264178 | None:intergenic | 30.0% | |
| ATTGGAATTGGAATTGGAAT+TGG | - | chr3_4:46264160-46264179 | None:intergenic | 30.0% | |
| ATTGGAATTGGAATTGGAAT+TGG | - | chr3_4:46264160-46264179 | None:intergenic | 30.0% | |
| TGTTAATTGTGGTGTGTTAA+GGG | - | chr3_4:46264196-46264215 | None:intergenic | 30.0% | |
| TTGTTAATTGTGGTGTGTTA+AGG | - | chr3_4:46264197-46264216 | None:intergenic | 30.0% | |
| GTAGTTTATTGGGGTTATTA+AGG | - | chr3_4:46264240-46264259 | None:intergenic | 30.0% | |
| AAGATTAAAGTTGTTGGTGT+TGG | + | chr3_4:46264391-46264410 | Msa0503320:CDS | 30.0% | |
| ATTATTACTAGCAATCCTCT+TGG | + | chr3_4:46264665-46264684 | Msa0503320:intron | 30.0% | |
| !!! | AATCCTCTTGGTTTTGTATT+TGG | + | chr3_4:46264677-46264696 | Msa0503320:intron | 30.0% |
| !!! | ATCCTCTTGGTTTTGTATTT+GGG | + | chr3_4:46264678-46264697 | Msa0503320:intron | 30.0% |
| CATGGGTAGTTATTATTGTT+GGG | - | chr3_4:46265023-46265042 | None:intergenic | 30.0% | |
| ACATGGGTAGTTATTATTGT+TGG | - | chr3_4:46265024-46265043 | None:intergenic | 30.0% | |
| CAATAATAACTACCCATGTA+TGG | + | chr3_4:46265025-46265044 | Msa0503320:intron | 30.0% | |
| CTATATTCAGCATGAAAATG+TGG | - | chr3_4:46265150-46265169 | None:intergenic | 30.0% | |
| GCTGAGAATCCTATAAAAAT+TGG | + | chr3_4:46265297-46265316 | Msa0503320:CDS | 30.0% | |
| CACAGTAGGAATAACATAAA+AGG | - | chr3_4:46265358-46265377 | None:intergenic | 30.0% | |
| CACACACACAAATCATATAA+TGG | - | chr3_4:46265407-46265426 | None:intergenic | 30.0% | |
| ! | CATTATATGATTTGTGTGTG+TGG | + | chr3_4:46265405-46265424 | Msa0503320:intron | 30.0% |
| GGAATACAAAAACACATTCA+GGG | - | chr3_4:46265487-46265506 | None:intergenic | 30.0% | |
| !! | GTTTTATTGACAACTTGTGT+AGG | + | chr3_4:46265564-46265583 | Msa0503320:intron | 30.0% |
| CATAAGGATTCAGGAAATAT+GGG | - | chr3_4:46265597-46265616 | None:intergenic | 30.0% | |
| ACATAAGGATTCAGGAAATA+TGG | - | chr3_4:46265598-46265617 | None:intergenic | 30.0% | |
| TAATACGTACATAAGGATTC+AGG | - | chr3_4:46265606-46265625 | None:intergenic | 30.0% | |
| CAACAAAAATGTGAATTAGG+AGG | + | chr3_4:46265643-46265662 | Msa0503320:intron | 30.0% | |
| TTGTGGCATTTGATTCAAAT+TGG | + | chr3_4:46265765-46265784 | Msa0503320:intron | 30.0% | |
| CTCAAAGCAACATAATAACT+TGG | - | chr3_4:46266462-46266481 | None:intergenic | 30.0% | |
| !! | CAAGTTATTATGTTGCTTTG+AGG | + | chr3_4:46266460-46266479 | Msa0503320:intron | 30.0% |
| TCATAATACAGTGACCAAAT+AGG | - | chr3_4:46266723-46266742 | None:intergenic | 30.0% | |
| GAAATGTTCAATAATGATGG+AGG | - | chr3_4:46266826-46266845 | None:intergenic | 30.0% | |
| AGTAAGCTGAAAATACCTTA+CGG | - | chr3_4:46267305-46267324 | None:intergenic | 30.0% | |
| !!! | AAGCTGTTTTGGAGTAATTA+TGG | - | chr3_4:46267329-46267348 | None:intergenic | 30.0% |
| !! | GTTGTTTTCATAAGCTGTTT+TGG | - | chr3_4:46267340-46267359 | None:intergenic | 30.0% |
| TAATCTGTCAATAAGCTTTG+CGG | - | chr3_4:46267673-46267692 | None:intergenic | 30.0% | |
| TTGATGTTTGTTTGCTTTCT+TGG | - | chr3_4:46267704-46267723 | None:intergenic | 30.0% | |
| ! | AACTGTTGATGAAAAGTTTG+AGG | - | chr3_4:46267739-46267758 | None:intergenic | 30.0% |
| ! | TTAAAAGAAGAGTTTTCGTG+GGG | - | chr3_4:46267775-46267794 | None:intergenic | 30.0% |
| ! | GTTAAAAGAAGAGTTTTCGT+GGG | - | chr3_4:46267776-46267795 | None:intergenic | 30.0% |
| ! | AGTTAAAAGAAGAGTTTTCG+TGG | - | chr3_4:46267777-46267796 | None:intergenic | 30.0% |
| GAGAAGAATTGGGAATTTAG+GGG | - | chr3_4:46264130-46264149 | None:intergenic | 35.0% | |
| GGAGAAGAATTGGGAATTTA+GGG | - | chr3_4:46264131-46264150 | None:intergenic | 35.0% | |
| TGGAATTGGAATTGGGAAAT+GGG | - | chr3_4:46264152-46264171 | None:intergenic | 35.0% | |
| TTGGAATTGGAATTGGGAAA+TGG | - | chr3_4:46264153-46264172 | None:intergenic | 35.0% | |
| TGTGGAATTGGAATTGGAAT+TGG | - | chr3_4:46264172-46264191 | None:intergenic | 35.0% | |
| AGGAAGAGAGTAGTTTATTG+GGG | - | chr3_4:46264249-46264268 | None:intergenic | 35.0% | |
| GAGGAAGAGAGTAGTTTATT+GGG | - | chr3_4:46264250-46264269 | None:intergenic | 35.0% | |
| AGAGGAAGAGAGTAGTTTAT+TGG | - | chr3_4:46264251-46264270 | None:intergenic | 35.0% | |
| GATTCGAATGAACATGTAAC+TGG | - | chr3_4:46264358-46264377 | None:intergenic | 35.0% | |
| !! | ATTAAAGTTGTTGGTGTTGG+TGG | + | chr3_4:46264394-46264413 | Msa0503320:CDS | 35.0% |
| !!! | TCCTCTTGGTTTTGTATTTG+GGG | + | chr3_4:46264679-46264698 | Msa0503320:intron | 35.0% |
| ACATGGTTAGATCATCACAT+TGG | - | chr3_4:46264983-46265002 | None:intergenic | 35.0% | |
| AGACTTAACCAATCATGTTC+TGG | - | chr3_4:46265055-46265074 | None:intergenic | 35.0% | |
| ! | AGGAGCTCTCCAATTTTTAT+AGG | - | chr3_4:46265309-46265328 | None:intergenic | 35.0% |
| GGGAATACAAAAACACATTC+AGG | - | chr3_4:46265488-46265507 | None:intergenic | 35.0% | |
| TTTGTATTCCCTCAACGAAA+AGG | + | chr3_4:46265497-46265516 | Msa0503320:intron | 35.0% | |
| TTATTGACAACTTGTGTAGG+CGG | + | chr3_4:46265567-46265586 | Msa0503320:intron | 35.0% | |
| AAAATGTGAATTAGGAGGGT+TGG | + | chr3_4:46265648-46265667 | Msa0503320:intron | 35.0% | |
| !! | AAATTGGTTGATAGAGATGC+AGG | + | chr3_4:46265781-46265800 | Msa0503320:intron | 35.0% |
| ACTATTGCTAATGCTCTTCA+TGG | + | chr3_4:46265856-46265875 | Msa0503320:CDS | 35.0% | |
| GATTTAGTGTTTGTAACTGC+TGG | + | chr3_4:46265883-46265902 | Msa0503320:CDS | 35.0% | |
| !! | ACATATCCCTTTAGCTTTGA+AGG | + | chr3_4:46265991-46266010 | Msa0503320:CDS | 35.0% |
| TTACTGAAATTGTGTGGGAA+AGG | - | chr3_4:46266155-46266174 | None:intergenic | 35.0% | |
| TTATGCACTGTTGTCAATTG+TGG | + | chr3_4:46266193-46266212 | Msa0503320:intron | 35.0% | |
| TTGTGAAATAGTGGCTATAG+CGG | - | chr3_4:46266272-46266291 | None:intergenic | 35.0% | |
| ATACGATCTGTGTGGTTAAA+GGG | - | chr3_4:46266380-46266399 | None:intergenic | 35.0% | |
| ATTAAACCATACGATCTGTG+TGG | - | chr3_4:46266388-46266407 | None:intergenic | 35.0% | |
| !!! | GCTTTGAGGATATTTTTCAG+TGG | + | chr3_4:46266474-46266493 | Msa0503320:intron | 35.0% |
| GGTAGATTGCAAAGAGAAAT+AGG | + | chr3_4:46266769-46266788 | Msa0503320:intron | 35.0% | |
| AAAGACCTAGATCAGTAGAT+TGG | + | chr3_4:46266799-46266818 | Msa0503320:intron | 35.0% | |
| AAATCCACATTTACAAGACC+AGG | - | chr3_4:46266922-46266941 | None:intergenic | 35.0% | |
| ! | GGATTTTGCTGATGTAAAAG+CGG | + | chr3_4:46266936-46266955 | Msa0503320:CDS | 35.0% |
| AGGAAAAGACATAACTCTTC+AGG | + | chr3_4:46267107-46267126 | Msa0503320:CDS | 35.0% | |
| CAATTTATGACATGTCCGTA+AGG | + | chr3_4:46267287-46267306 | Msa0503320:intron | 35.0% | |
| TGTTGATATTGTGCATCTGT+TGG | + | chr3_4:46267461-46267480 | Msa0503320:intron | 35.0% | |
| ! | TGTAAGTAGCATCTTTTGGA+AGG | - | chr3_4:46267640-46267659 | None:intergenic | 35.0% |
| ! | GATCTGTAAGTAGCATCTTT+TGG | - | chr3_4:46267644-46267663 | None:intergenic | 35.0% |
| CTTATTGACAGATTACCTGT+GGG | + | chr3_4:46267678-46267697 | Msa0503320:CDS | 35.0% | |
| ACAAACATCAACTCCGTTAA+AGG | + | chr3_4:46267713-46267732 | Msa0503320:CDS | 35.0% | |
| ! | GAAAAGTTTGAGGCCTTTAA+CGG | - | chr3_4:46267729-46267748 | None:intergenic | 35.0% |
| GCTTGATTTAGGTATCATTC+TGG | + | chr3_4:46267852-46267871 | Msa0503320:three_prime_UTR | 35.0% | |
| AAAACATTCTCCACAATCGA+GGG | - | chr3_4:46267883-46267902 | None:intergenic | 35.0% | |
| AAAAACATTCTCCACAATCG+AGG | - | chr3_4:46267884-46267903 | None:intergenic | 35.0% | |
| GGGAGAAGAATTGGGAATTT+AGG | - | chr3_4:46264132-46264151 | None:intergenic | 40.0% | |
| TGGGAAATGGGAGAAGAATT+GGG | - | chr3_4:46264140-46264159 | None:intergenic | 40.0% | |
| TTGGGAAATGGGAGAAGAAT+TGG | - | chr3_4:46264141-46264160 | None:intergenic | 40.0% | |
| AAGGGTTGTGGAATTGGAAT+TGG | - | chr3_4:46264178-46264197 | None:intergenic | 40.0% | |
| TGTGTTAAGGGTTGTGGAAT+TGG | - | chr3_4:46264184-46264203 | None:intergenic | 40.0% | |
| AATTGGAGTGGGAATTGAAG+AGG | - | chr3_4:46264269-46264288 | None:intergenic | 40.0% | |
| GTAGTGTGAGAAATTGGAGT+GGG | - | chr3_4:46264280-46264299 | None:intergenic | 40.0% | |
| AGTAGTGTGAGAAATTGGAG+TGG | - | chr3_4:46264281-46264300 | None:intergenic | 40.0% | |
| CTGAGAGTAGTGTGAGAAAT+TGG | - | chr3_4:46264286-46264305 | None:intergenic | 40.0% | |
| AATGCTGTTAACCGCATGAT+TGG | + | chr3_4:46264427-46264446 | Msa0503320:CDS | 40.0% | |
| !!! | CCTCTTGGTTTTGTATTTGG+GGG | + | chr3_4:46264680-46264699 | Msa0503320:intron | 40.0% |
| TGTGAGTTAAAGTCGCACAT+TGG | + | chr3_4:46264845-46264864 | Msa0503320:intron | 40.0% | |
| AGTTAAAGTCGCACATTGGA+TGG | + | chr3_4:46264849-46264868 | Msa0503320:intron | 40.0% | |
| TTGAGCAACATATAGGTGAG+AGG | + | chr3_4:46264883-46264902 | Msa0503320:intron | 40.0% | |
| AAACCCAATGCCTTAAGGTT+TGG | + | chr3_4:46264912-46264931 | Msa0503320:intron | 40.0% | |
| AACCCAATGCCTTAAGGTTT+GGG | + | chr3_4:46264913-46264932 | Msa0503320:intron | 40.0% | |
| AGCAATCACACAAAGTGAGT+TGG | - | chr3_4:46264954-46264973 | None:intergenic | 40.0% | |
| TGTGATGATCTAACCATGTG+AGG | + | chr3_4:46264984-46265003 | Msa0503320:intron | 40.0% | |
| TTATTATTGTTGGGCCACGA+GGG | - | chr3_4:46265014-46265033 | None:intergenic | 40.0% | |
| ! | TGTTCTGGCTAACCATACAT+GGG | - | chr3_4:46265040-46265059 | None:intergenic | 40.0% |
| ! | ATGTTCTGGCTAACCATACA+TGG | - | chr3_4:46265041-46265060 | None:intergenic | 40.0% |
| ! | ATGGTTAGCCAGAACATGAT+TGG | + | chr3_4:46265044-46265063 | Msa0503320:intron | 40.0% |
| TTATTCCTACTGTGCCCAAT+TGG | + | chr3_4:46265364-46265383 | Msa0503320:CDS | 40.0% | |
| ! | TGTTTCCTCCTTTTCGTTGA+GGG | - | chr3_4:46265508-46265527 | None:intergenic | 40.0% |
| ! | TTGTTTCCTCCTTTTCGTTG+AGG | - | chr3_4:46265509-46265528 | None:intergenic | 40.0% |
| TATTGACAACTTGTGTAGGC+GGG | + | chr3_4:46265568-46265587 | Msa0503320:intron | 40.0% | |
| AGCTGCAGATGATTTGATTG+TGG | + | chr3_4:46265748-46265767 | Msa0503320:intron | 40.0% | |
| ! | TACTGGTGGTAATCCACTTT+TGG | + | chr3_4:46265804-46265823 | Msa0503320:CDS | 40.0% |
| !! | ACTGGTGGTAATCCACTTTT+GGG | + | chr3_4:46265805-46265824 | Msa0503320:CDS | 40.0% |
| AGTGTTTGTAACTGCTGGTA+TGG | + | chr3_4:46265888-46265907 | Msa0503320:CDS | 40.0% | |
| GTGTTTGTAACTGCTGGTAT+GGG | + | chr3_4:46265889-46265908 | Msa0503320:CDS | 40.0% | |
| ! | ACCAGCTTCTTTTGATATCC+TGG | - | chr3_4:46265950-46265969 | None:intergenic | 40.0% |
| GAAGCTGGTTACTTAACTGT+TGG | + | chr3_4:46265961-46265980 | Msa0503320:CDS | 40.0% | |
| TTGCGTCCTTCAAAGCTAAA+GGG | - | chr3_4:46266000-46266019 | None:intergenic | 40.0% | |
| TTTGCGTCCTTCAAAGCTAA+AGG | - | chr3_4:46266001-46266020 | None:intergenic | 40.0% | |
| AGAATAACGCTGTTGCATAG+AGG | - | chr3_4:46266344-46266363 | None:intergenic | 40.0% | |
| CATACGATCTGTGTGGTTAA+AGG | - | chr3_4:46266381-46266400 | None:intergenic | 40.0% | |
| CTTTAACCACACAGATCGTA+TGG | + | chr3_4:46266379-46266398 | Msa0503320:intron | 40.0% | |
| ATGTCAAGCAGACGATCATT+TGG | - | chr3_4:46266580-46266599 | None:intergenic | 40.0% | |
| TGATGATCAAACGCCTCTTA+CGG | + | chr3_4:46266603-46266622 | Msa0503320:CDS | 40.0% | |
| !! | GCTGATGATGTTTTACGACA+AGG | + | chr3_4:46266640-46266659 | Msa0503320:CDS | 40.0% |
| !! | TGTTTTACGACAAGGAGTAC+AGG | + | chr3_4:46266648-46266667 | Msa0503320:CDS | 40.0% |
| !! | GTTTTACGACAAGGAGTACA+GGG | + | chr3_4:46266649-46266668 | Msa0503320:CDS | 40.0% |
| CCAGGTATCTGTAGAAAGAT+GGG | - | chr3_4:46266904-46266923 | None:intergenic | 40.0% | |
| ACCAGGTATCTGTAGAAAGA+TGG | - | chr3_4:46266905-46266924 | None:intergenic | 40.0% | |
| !! | GATACCTGGTCTTGTAAATG+TGG | + | chr3_4:46266915-46266934 | Msa0503320:intron | 40.0% |
| ! | GCTACTTTGGCACCTTTAAT+TGG | + | chr3_4:46267039-46267058 | Msa0503320:CDS | 40.0% |
| TCATCTATTCAGTCAGCTAC+TGG | + | chr3_4:46267063-46267082 | Msa0503320:CDS | 40.0% | |
| CATCTATTCAGTCAGCTACT+GGG | + | chr3_4:46267064-46267083 | Msa0503320:CDS | 40.0% | |
| GGAAGTGAATAGAGTTTCTC+AGG | + | chr3_4:46267128-46267147 | Msa0503320:CDS | 40.0% | |
| GTCATTCCATTTGCACTAAC+AGG | + | chr3_4:46267188-46267207 | Msa0503320:intron | 40.0% | |
| ATCAGACCTGTTAGTGCAAA+TGG | - | chr3_4:46267197-46267216 | None:intergenic | 40.0% | |
| TTTGCACTAACAGGTCTGAT+TGG | + | chr3_4:46267197-46267216 | Msa0503320:intron | 40.0% | |
| ! | AGATGCTACTTACAGATCCA+AGG | + | chr3_4:46267646-46267665 | Msa0503320:CDS | 40.0% |
| ! | GATGCTACTTACAGATCCAA+GGG | + | chr3_4:46267647-46267666 | Msa0503320:CDS | 40.0% |
| GCTTATTGACAGATTACCTG+TGG | + | chr3_4:46267677-46267696 | Msa0503320:CDS | 40.0% | |
| TTGTGGTGTGTTAAGGGTTG+TGG | - | chr3_4:46264190-46264209 | None:intergenic | 45.0% | |
| !! | AAAGTTGTTGGTGTTGGTGG+TGG | + | chr3_4:46264397-46264416 | Msa0503320:CDS | 45.0% |
| ! | GTTAACCGCATGATTGGTTG+CGG | + | chr3_4:46264433-46264452 | Msa0503320:CDS | 45.0% |
| GTAATCCGCAACCAATCATG+CGG | - | chr3_4:46264441-46264460 | None:intergenic | 45.0% | |
| ! | CATGATTGGTTGCGGATTAC+AGG | + | chr3_4:46264441-46264460 | Msa0503320:CDS | 45.0% |
| CCCCCAAATACAAAACCAAG+AGG | - | chr3_4:46264683-46264702 | None:intergenic | 45.0% | |
| GTCGAGGTTGAGCAACATAT+AGG | + | chr3_4:46264876-46264895 | Msa0503320:intron | 45.0% | |
| !! | ACCTTAAGGCATTGGGTTTG+CGG | - | chr3_4:46264911-46264930 | None:intergenic | 45.0% |
| ACCCAATGCCTTAAGGTTTG+GGG | + | chr3_4:46264914-46264933 | Msa0503320:intron | 45.0% | |
| ! | ACCCCAAACCTTAAGGCATT+GGG | - | chr3_4:46264918-46264937 | None:intergenic | 45.0% |
| CATCTTCACCCCAAACCTTA+AGG | - | chr3_4:46264925-46264944 | None:intergenic | 45.0% | |
| ! | TAAGGTTTGGGGTGAAGATG+TGG | + | chr3_4:46264925-46264944 | Msa0503320:intron | 45.0% |
| GTTATTATTGTTGGGCCACG+AGG | - | chr3_4:46265015-46265034 | None:intergenic | 45.0% | |
| AACTTCCAATTGGGCACAGT+AGG | - | chr3_4:46265372-46265391 | None:intergenic | 45.0% | |
| GTATTCCCTCAACGAAAAGG+AGG | + | chr3_4:46265500-46265519 | Msa0503320:intron | 45.0% | |
| ATTGACAACTTGTGTAGGCG+GGG | + | chr3_4:46265569-46265588 | Msa0503320:intron | 45.0% | |
| ! | GTTGATAGAGATGCAGGTAC+TGG | + | chr3_4:46265787-46265806 | Msa0503320:intron | 45.0% |
| !! | CTGGTGGTAATCCACTTTTG+GGG | + | chr3_4:46265806-46265825 | Msa0503320:CDS | 45.0% |
| !! | TGGTGGTAATCCACTTTTGG+GGG | + | chr3_4:46265807-46265826 | Msa0503320:CDS | 45.0% |
| TTTGTAACTGCTGGTATGGG+TGG | + | chr3_4:46265892-46265911 | Msa0503320:CDS | 45.0% | |
| GCCAGGATATCAAAAGAAGC+TGG | + | chr3_4:46265946-46265965 | Msa0503320:CDS | 45.0% | |
| ! | GGATAGGTAATTTGCCTGCA+AGG | - | chr3_4:46266028-46266047 | None:intergenic | 45.0% |
| TGGTTAAAGGGTGGCTATAG+CGG | - | chr3_4:46266368-46266387 | None:intergenic | 45.0% | |
| ! | ATTCTGCTGCAGCTTTTCGA+TGG | - | chr3_4:46266536-46266555 | None:intergenic | 45.0% |
| !! | AGACTGAAAGCATCCGTAAG+AGG | - | chr3_4:46266619-46266638 | None:intergenic | 45.0% |
| GAGGACCAATCTACTGATCT+AGG | - | chr3_4:46266807-46266826 | None:intergenic | 45.0% | |
| CCCATCTTTCTACAGATACC+TGG | + | chr3_4:46266901-46266920 | Msa0503320:intron | 45.0% | |
| AAAGCGGTGATGAAAGACTC+TGG | + | chr3_4:46266952-46266971 | Msa0503320:CDS | 45.0% | |
| ! | TTCTGCACGGTTTTTACCAG+AGG | - | chr3_4:46267004-46267023 | None:intergenic | 45.0% |
| AGCTGCAGAACAAGCTACTT+TGG | + | chr3_4:46267026-46267045 | Msa0503320:CDS | 45.0% | |
| !! | TGGCTTTAAACGACGTCGCA+GGG | - | chr3_4:46264338-46264357 | None:intergenic | 50.0% |
| CACATTGGATGGAAGAGTCG+AGG | + | chr3_4:46264860-46264879 | Msa0503320:intron | 50.0% | |
| !! | CCTTAAGGCATTGGGTTTGC+GGG | - | chr3_4:46264910-46264929 | None:intergenic | 50.0% |
| CACCCCAAACCTTAAGGCAT+TGG | - | chr3_4:46264919-46264938 | None:intergenic | 50.0% | |
| !! | TCCTGACTCGTGGATTAGGT+CGG | + | chr3_4:46265325-46265344 | Msa0503320:CDS | 50.0% |
| !! | GATAGAGATGCAGGTACTGG+TGG | + | chr3_4:46265790-46265809 | Msa0503320:intron | 50.0% |
| TTTGATATCCTGGCCACGAC+TGG | - | chr3_4:46265940-46265959 | None:intergenic | 50.0% | |
| AGGACGCAAAAGATCCTTGC+AGG | + | chr3_4:46266011-46266030 | Msa0503320:CDS | 50.0% | |
| CGATCTGTGTGGTTAAAGGG+TGG | - | chr3_4:46266377-46266396 | None:intergenic | 50.0% | |
| !! | TTTCGATGGCTTCTAGAGCC+TGG | - | chr3_4:46266522-46266541 | None:intergenic | 50.0% |
| CGAAAAGCTGCAGCAGAATG+TGG | + | chr3_4:46266537-46266556 | Msa0503320:CDS | 50.0% | |
| !! | GACTCTGGAACTGCAATGCT+TGG | + | chr3_4:46266967-46266986 | Msa0503320:CDS | 50.0% |
| GGAACTGCAATGCTTGGAGT+AGG | + | chr3_4:46266973-46266992 | Msa0503320:CDS | 50.0% | |
| CTTGGAGTAGGTGTTTCCTC+TGG | + | chr3_4:46266985-46267004 | Msa0503320:CDS | 50.0% | |
| GTTCTGCAGCTTCTTCTGCA+CGG | - | chr3_4:46267017-46267036 | None:intergenic | 50.0% | |
| CATGTGACTCTCATTGCCAC+CGG | + | chr3_4:46267603-46267622 | Msa0503320:CDS | 50.0% | |
| TTGGAAGGACTGTGAGAAGC+CGG | - | chr3_4:46267625-46267644 | None:intergenic | 50.0% | |
| TCAATAAGCTTTGCGGCCCT+TGG | - | chr3_4:46267666-46267685 | None:intergenic | 50.0% | |
| TGTTTGCTTTCTTGGCCCAC+AGG | - | chr3_4:46267696-46267715 | None:intergenic | 50.0% | |
| ! | TCTGGTTTGTCCCTCGATTG+TGG | + | chr3_4:46267870-46267889 | Msa0503320:three_prime_UTR | 50.0% |
| ! | GACGTCGCAGGGGTTTTCTA+GGG | - | chr3_4:46264327-46264346 | None:intergenic | 55.0% |
| !! | GGCTTTAAACGACGTCGCAG+GGG | - | chr3_4:46264337-46264356 | None:intergenic | 55.0% |
| !! | CTGGCTTTAAACGACGTCGC+AGG | - | chr3_4:46264339-46264358 | None:intergenic | 55.0% |
| !! | GTTGTTGGTGTTGGTGGTGG+TGG | + | chr3_4:46264400-46264419 | Msa0503320:CDS | 55.0% |
| CCCGCAAACCCAATGCCTTA+AGG | + | chr3_4:46264907-46264926 | Msa0503320:intron | 55.0% | |
| ! | ATTGGAGAGCTCCTGACTCG+TGG | + | chr3_4:46265315-46265334 | Msa0503320:CDS | 55.0% |
| ! | GAGCTCCTGACTCGTGGATT+AGG | + | chr3_4:46265321-46265340 | Msa0503320:CDS | 55.0% |
| TCCGACCTAATCCACGAGTC+AGG | - | chr3_4:46265329-46265348 | None:intergenic | 55.0% | |
| ! | GCAGCTTGTTCCCCCAAAAG+TGG | - | chr3_4:46265820-46265839 | None:intergenic | 55.0% |
| TTTGGGGGAACAAGCTGCTG+AGG | + | chr3_4:46265822-46265841 | Msa0503320:CDS | 55.0% | |
| GTAACTGCTGGTATGGGTGG+AGG | + | chr3_4:46265895-46265914 | Msa0503320:CDS | 55.0% | |
| GTTGTTGACGAGCGCTACAG+CGG | + | chr3_4:46267573-46267592 | Msa0503320:CDS | 55.0% | |
| TTGTTGACGAGCGCTACAGC+GGG | + | chr3_4:46267574-46267593 | Msa0503320:CDS | 55.0% | |
| ! | CGACGTCGCAGGGGTTTTCT+AGG | - | chr3_4:46264328-46264347 | None:intergenic | 60.0% |
| TGCTGGTATGGGTGGAGGCA+CGG | + | chr3_4:46265900-46265919 | Msa0503320:CDS | 60.0% | |
| TGTTGACGAGCGCTACAGCG+GGG | + | chr3_4:46267575-46267594 | Msa0503320:CDS | 60.0% | |
| GAAGGACTGTGAGAAGCCGG+TGG | - | chr3_4:46267622-46267641 | None:intergenic | 60.0% | |
| CCACGAGGGAGAGCCTCACA+TGG | - | chr3_4:46265000-46265019 | None:intergenic | 65.0% | |
| CCATGTGAGGCTCTCCCTCG+TGG | + | chr3_4:46264997-46265016 | Msa0503320:intron | 65.0% | |
| ! | GCTGGTATGGGTGGAGGCAC+GGG | + | chr3_4:46265901-46265920 | Msa0503320:CDS | 65.0% |
| ! | CTGGTATGGGTGGAGGCACG+GGG | + | chr3_4:46265902-46265921 | Msa0503320:CDS | 65.0% |
| !! | GTCTGGTGCTGCTCCAGTCG+TGG | + | chr3_4:46265924-46265943 | Msa0503320:CDS | 65.0% |
| ! | ATGGGTGGAGGCACGGGGTC+TGG | + | chr3_4:46265907-46265926 | Msa0503320:CDS | 70.0% |
| ! | GTGCTGCTCCAGTCGTGGCC+AGG | + | chr3_4:46265929-46265948 | Msa0503320:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 46264069 | 46268047 | 46264069 | ID=Msa0503320;Name=Msa0503320 |
| chr3_4 | mRNA | 46264069 | 46268047 | 46264069 | ID=Msa0503320-mRNA-1;Parent=Msa0503320;Name=Msa0503320-mRNA-1;_AED=0.05;_eAED=0.05;_QI=119|0.83|0.71|1|0.83|0.71|7|253|431 |
| chr3_4 | exon | 46264069 | 46264165 | 46264069 | ID=Msa0503320-mRNA-1:exon:9885;Parent=Msa0503320-mRNA-1 |
| chr3_4 | exon | 46264201 | 46264462 | 46264201 | ID=Msa0503320-mRNA-1:exon:9886;Parent=Msa0503320-mRNA-1 |
| chr3_4 | exon | 46265243 | 46265388 | 46265243 | ID=Msa0503320-mRNA-1:exon:9887;Parent=Msa0503320-mRNA-1 |
| chr3_4 | exon | 46265795 | 46266032 | 46265795 | ID=Msa0503320-mRNA-1:exon:9888;Parent=Msa0503320-mRNA-1 |
| chr3_4 | exon | 46266523 | 46266690 | 46266523 | ID=Msa0503320-mRNA-1:exon:9889;Parent=Msa0503320-mRNA-1 |
| chr3_4 | exon | 46266916 | 46267149 | 46266916 | ID=Msa0503320-mRNA-1:exon:9890;Parent=Msa0503320-mRNA-1 |
| chr3_4 | exon | 46267525 | 46268047 | 46267525 | ID=Msa0503320-mRNA-1:exon:9891;Parent=Msa0503320-mRNA-1 |
| chr3_4 | five_prime_UTR | 46264069 | 46264165 | 46264069 | ID=Msa0503320-mRNA-1:five_prime_utr;Parent=Msa0503320-mRNA-1 |
| chr3_4 | five_prime_UTR | 46264201 | 46264222 | 46264201 | ID=Msa0503320-mRNA-1:five_prime_utr;Parent=Msa0503320-mRNA-1 |
| chr3_4 | CDS | 46264223 | 46264462 | 46264223 | ID=Msa0503320-mRNA-1:cds;Parent=Msa0503320-mRNA-1 |
| chr3_4 | CDS | 46265243 | 46265388 | 46265243 | ID=Msa0503320-mRNA-1:cds;Parent=Msa0503320-mRNA-1 |
| chr3_4 | CDS | 46265795 | 46266032 | 46265795 | ID=Msa0503320-mRNA-1:cds;Parent=Msa0503320-mRNA-1 |
| chr3_4 | CDS | 46266523 | 46266690 | 46266523 | ID=Msa0503320-mRNA-1:cds;Parent=Msa0503320-mRNA-1 |
| chr3_4 | CDS | 46266916 | 46267149 | 46266916 | ID=Msa0503320-mRNA-1:cds;Parent=Msa0503320-mRNA-1 |
| chr3_4 | CDS | 46267525 | 46267794 | 46267525 | ID=Msa0503320-mRNA-1:cds;Parent=Msa0503320-mRNA-1 |
| chr3_4 | three_prime_UTR | 46267795 | 46268047 | 46267795 | ID=Msa0503320-mRNA-1:three_prime_utr;Parent=Msa0503320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
