Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504950 | XP_013460330.1 | 80.488 | 246 | 37 | 2 | 8 | 250 | 6 | 243 | 2.19e-137 | 398 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504950 | sp|Q2N2K0|PHYK3_SOYBN | 72.245 | 245 | 63 | 2 | 11 | 250 | 17 | 261 | 2.71e-117 | 341 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504950 | A0A072UY92 | 80.488 | 246 | 37 | 2 | 8 | 250 | 6 | 243 | 1.04e-137 | 398 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0413350 | Msa0504950 | 0.813434 | 2.564598e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504950 | MtrunA17_Chr3g0105721 | 80.488 | 246 | 37 | 2 | 8 | 250 | 6 | 243 | 2.01e-141 | 398 |
| Msa0504950 | MtrunA17_Chr4g0006501 | 84.746 | 177 | 27 | 0 | 74 | 250 | 30 | 206 | 7.37e-107 | 309 |
| Msa0504950 | MtrunA17_Chr4g0006481 | 82.486 | 177 | 31 | 0 | 74 | 250 | 5 | 181 | 1.37e-103 | 300 |
| Msa0504950 | MtrunA17_Chr1g0197711 | 49.359 | 156 | 79 | 0 | 95 | 250 | 90 | 245 | 3.62e-55 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504950 | AT5G58560.1 | 58.621 | 232 | 92 | 2 | 20 | 249 | 19 | 248 | 9.86e-89 | 265 |
| Msa0504950 | AT5G04490.2 | 42.135 | 178 | 103 | 0 | 72 | 249 | 65 | 242 | 2.17e-48 | 160 |
| Msa0504950 | AT5G04490.1 | 42.135 | 178 | 103 | 0 | 72 | 249 | 65 | 242 | 1.13e-47 | 160 |
Find 77 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGCACCAGGGAGCTTCTT+AGG | 0.194549 | 3_4:-50125479 | Msa0504950:intron |
| TTCTATGCTGCTTTGGTTCC+GGG | 0.216874 | 3_4:-50126061 | Msa0504950:CDS |
| ATGGGAGTTTCCGGGGTATT+GGG | 0.226453 | 3_4:+50127359 | None:intergenic |
| TGCTATGTTGGCCATTATTC+AGG | 0.231918 | 3_4:-50126195 | Msa0504950:intron |
| AATGGCATCTGCTGGATTCT+TGG | 0.238399 | 3_4:-50125051 | Msa0504950:CDS |
| TAGTGGCAGATGGGAGTTTC+CGG | 0.260619 | 3_4:+50127350 | None:intergenic |
| GTTCTATGCTGCTTTGGTTC+CGG | 0.265588 | 3_4:-50126062 | Msa0504950:CDS |
| CGTTTGCATCGATAATATAT+TGG | 0.273540 | 3_4:-50125428 | Msa0504950:CDS |
| GATGGGAGTTTCCGGGGTAT+TGG | 0.299164 | 3_4:+50127358 | None:intergenic |
| GTGAAATCAATGAGCAGATT+TGG | 0.307790 | 3_4:-50125980 | Msa0504950:CDS |
| TTCCGGGAGTTAATATATTT+CGG | 0.327197 | 3_4:-50126045 | Msa0504950:CDS |
| TGAGCAGATTTGGAGATTAT+AGG | 0.329796 | 3_4:-50125970 | Msa0504950:intron |
| CGGATGCTTGTGACTGGACT+TGG | 0.336320 | 3_4:-50126025 | Msa0504950:CDS |
| AAATGGATGGAAAATGAAAA+GGG | 0.373302 | 3_4:-50127588 | Msa0504950:five_prime_UTR |
| CTATATAATTACCTGAATAA+TGG | 0.373692 | 3_4:+50126184 | None:intergenic |
| TTTGTCTTTAGAAATTGAAT+AGG | 0.380115 | 3_4:-50126252 | Msa0504950:intron |
| GCTGGATTCTTGGCTTCTGT+TGG | 0.392089 | 3_4:-50125041 | Msa0504950:CDS |
| TTGCACCAGGGAGCTTCTTA+GGG | 0.397821 | 3_4:-50125478 | Msa0504950:intron |
| GAGTTTCCGGGGTATTGGGG+TGG | 0.399829 | 3_4:+50127363 | None:intergenic |
| GGCATCGTTCTATGCTGCTT+TGG | 0.401496 | 3_4:-50126068 | Msa0504950:CDS |
| AAAATGGATGGAAAATGAAA+AGG | 0.414185 | 3_4:-50127589 | Msa0504950:five_prime_UTR |
| GATGTCGTTGGAAGGAGATT+TGG | 0.415045 | 3_4:-50125125 | Msa0504950:CDS |
| AATAGGAGAAGAATGAGAAA+TGG | 0.415675 | 3_4:+50127450 | None:intergenic |
| CATATTGCAGCAATGGAAAC+AGG | 0.416756 | 3_4:+50125396 | None:intergenic |
| AAATGGGTGTGAGGAGAAGA+GGG | 0.425921 | 3_4:+50127467 | None:intergenic |
| TGGGAGTTTCCGGGGTATTG+GGG | 0.435550 | 3_4:+50127360 | None:intergenic |
| AGTGGCAGATGGGAGTTTCC+GGG | 0.436295 | 3_4:+50127351 | None:intergenic |
| CTGGATTCTTGGCTTCTGTT+GGG | 0.437915 | 3_4:-50125040 | Msa0504950:CDS |
| GAAATGGGTGTGAGGAGAAG+AGG | 0.446619 | 3_4:+50127466 | None:intergenic |
| ATAGGAGAAGAATGAGAAAT+GGG | 0.447510 | 3_4:+50127451 | None:intergenic |
| TTCGTTGCTACAGCTATCTC+TGG | 0.448980 | 3_4:-50127298 | Msa0504950:CDS |
| TCAATTGCAATGGCATCTGC+TGG | 0.481330 | 3_4:-50125059 | Msa0504950:CDS |
| ATATTTCGGATGCTTGTGAC+TGG | 0.494875 | 3_4:-50126031 | Msa0504950:CDS |
| AGTTTCCGGGGTATTGGGGT+GGG | 0.505658 | 3_4:+50127364 | None:intergenic |
| CAAATTACATATTGCAGCAA+TGG | 0.506230 | 3_4:+50125389 | None:intergenic |
| GGGAGAAGAAAACAAGGAGG+AGG | 0.508438 | 3_4:+50127384 | None:intergenic |
| AAGAGGGAGAGATGAAACAG+AGG | 0.519806 | 3_4:+50127483 | None:intergenic |
| CTGTTTCTTGTCTTAGAGTG+TGG | 0.526941 | 3_4:-50127267 | Msa0504950:CDS |
| AGAGGGAGAGATGAAACAGA+GGG | 0.533998 | 3_4:+50127484 | None:intergenic |
| GTCGTTGGAAGGAGATTTGG+TGG | 0.536236 | 3_4:-50125122 | Msa0504950:CDS |
| GACTGGTATTCATGCTATGT+TGG | 0.541273 | 3_4:-50126207 | Msa0504950:CDS |
| ATCCGAAATATATTAACTCC+CGG | 0.543539 | 3_4:+50126043 | None:intergenic |
| AATCAGAAAGCAAAGGGTCG+TGG | 0.552339 | 3_4:+50127320 | None:intergenic |
| TGGTGAAGCATAGTGGCAGA+TGG | 0.552558 | 3_4:+50127340 | None:intergenic |
| AAACTAGTACATATATCCAT+TGG | 0.553176 | 3_4:-50126229 | Msa0504950:CDS |
| AACAATCAATCAAAGAAGGT+TGG | 0.555719 | 3_4:-50127626 | Msa0504950:five_prime_UTR |
| ATTGATTGTTGTACAATGGA+AGG | 0.556730 | 3_4:+50127639 | None:intergenic |
| CAACGAAATCAGAAAGCAAA+GGG | 0.556855 | 3_4:+50127314 | None:intergenic |
| GTACAACAATCAATCAAAGA+AGG | 0.557182 | 3_4:-50127630 | Msa0504950:five_prime_UTR |
| GCAATATGTAATTTGTGTGC+AGG | 0.561356 | 3_4:-50125381 | Msa0504950:CDS |
| TCAGGTATGGCCGATGTCGT+TGG | 0.567736 | 3_4:-50125137 | Msa0504950:intron |
| ATTATTGCAGCAATGACCGA+TGG | 0.572534 | 3_4:-50126090 | Msa0504950:intron |
| GGGAATTGAGTCAAACTTGG+TGG | 0.573596 | 3_4:+50127504 | None:intergenic |
| CTTCTCCCACCCCAATACCC+CGG | 0.574936 | 3_4:-50127369 | Msa0504950:CDS |
| TGTAATTTGTGTGCAGGAGA+TGG | 0.579965 | 3_4:-50125375 | Msa0504950:intron |
| GAGGAGGAAGAAGAAGTGAG+AGG | 0.581088 | 3_4:+50127400 | None:intergenic |
| AGAGGGAATTGAGTCAAACT+TGG | 0.581183 | 3_4:+50127501 | None:intergenic |
| TTTGATTGATTGTTGTACAA+TGG | 0.588532 | 3_4:+50127635 | None:intergenic |
| CTACGCTGGTTCAATTGCAA+TGG | 0.593181 | 3_4:-50125069 | Msa0504950:CDS |
| AAGAATGAGAAATGGGTGTG+AGG | 0.596828 | 3_4:+50127458 | None:intergenic |
| TAGCATGAATACCAGTCCAA+TGG | 0.597393 | 3_4:+50126213 | None:intergenic |
| TGCACCAGGGAGCTTCTTAG+GGG | 0.601951 | 3_4:-50125477 | Msa0504950:intron |
| AGTACATATATCCATTGGAC+TGG | 0.602913 | 3_4:-50126224 | Msa0504950:CDS |
| GGTGAAGCATAGTGGCAGAT+GGG | 0.609521 | 3_4:+50127341 | None:intergenic |
| GCAACGAAATCAGAAAGCAA+AGG | 0.611538 | 3_4:+50127313 | None:intergenic |
| TTATTGCAGCAATGACCGAT+GGG | 0.612226 | 3_4:-50126089 | Msa0504950:intron |
| GTATGGCCGATGTCGTTGGA+AGG | 0.615251 | 3_4:-50125133 | Msa0504950:CDS |
| AAATCTCCTTCCAACGACAT+CGG | 0.635423 | 3_4:+50125127 | None:intergenic |
| AATGGATGGAAAATGAAAAG+GGG | 0.636462 | 3_4:-50127587 | Msa0504950:five_prime_UTR |
| CAGCATAGAACGATGCCCAT+CGG | 0.637249 | 3_4:+50126074 | None:intergenic |
| GTGGCAGATGGGAGTTTCCG+GGG | 0.638313 | 3_4:+50127352 | None:intergenic |
| CATTGCAATTGAACCAGCGT+AGG | 0.645884 | 3_4:+50125070 | None:intergenic |
| TGGGGTGGGAGAAGAAAACA+AGG | 0.662011 | 3_4:+50127378 | None:intergenic |
| AGGGTCGTGGTGAAGCATAG+TGG | 0.672822 | 3_4:+50127333 | None:intergenic |
| ATCGTTGCAGCATAATACAG+TGG | 0.703967 | 3_4:+50125453 | None:intergenic |
| GGTGGGAGAAGAAAACAAGG+AGG | 0.740107 | 3_4:+50127381 | None:intergenic |
| TCTGCTCATTGATTTCACAG+TGG | 0.776795 | 3_4:+50125985 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTTAATATACTTTAG+GGG | - | chr3_4:50127075-50127094 | Msa0504950:intron | 10.0% |
| !! | TAATTAAAAGACTAAATTAA+AGG | - | chr3_4:50127118-50127137 | Msa0504950:intron | 10.0% |
| !! | AATTAAAAGACTAAATTAAA+GGG | - | chr3_4:50127119-50127138 | Msa0504950:intron | 10.0% |
| !! | GAAATAATATATTAACAAAA+AGG | + | chr3_4:50127538-50127557 | None:intergenic | 10.0% |
| !!! | TTTTGTTAATATATTATTTC+AGG | - | chr3_4:50127538-50127557 | Msa0504950:exon | 10.0% |
| !!! | TTTCTACTTTTTATTTATGT+TGG | - | chr3_4:50125503-50125522 | Msa0504950:intron | 15.0% |
| !!! | TTCTACTTTTTATTTATGTT+GGG | - | chr3_4:50125504-50125523 | Msa0504950:intron | 15.0% |
| !! | TTTGATCTGTTAAAAAATAT+GGG | - | chr3_4:50125553-50125572 | Msa0504950:intron | 15.0% |
| !! | AATTTAATCATAAAATTCCT+TGG | + | chr3_4:50125877-50125896 | None:intergenic | 15.0% |
| !! | TATGATTAAATTCATTGTTT+AGG | - | chr3_4:50125885-50125904 | Msa0504950:intron | 15.0% |
| !! | ATGATTAAATTCATTGTTTA+GGG | - | chr3_4:50125886-50125905 | Msa0504950:intron | 15.0% |
| !! | TGAAAAATTTCATAAACTTT+AGG | - | chr3_4:50127044-50127063 | Msa0504950:intron | 15.0% |
| !! | GAAAAATTTCATAAACTTTA+GGG | - | chr3_4:50127045-50127064 | Msa0504950:intron | 15.0% |
| !!! | TTAATATATTATTTCAGGTA+TGG | - | chr3_4:50127543-50127562 | Msa0504950:exon | 15.0% |
| !!! | GGTTGTTTTGAATAAAAAAA+TGG | - | chr3_4:50125088-50125107 | Msa0504950:CDS | 20.0% |
| !!! | GTTTTGAATAAAAAAATGGA+TGG | - | chr3_4:50125092-50125111 | Msa0504950:CDS | 20.0% |
| !! | GTTTGATCTGTTAAAAAATA+TGG | - | chr3_4:50125552-50125571 | Msa0504950:intron | 20.0% |
| !! | TGTCAATATCATGTTATATT+CGG | - | chr3_4:50126046-50126065 | Msa0504950:CDS | 20.0% |
| !! | TGTATCAGTACTTATTAATT+TGG | - | chr3_4:50126079-50126098 | Msa0504950:CDS | 20.0% |
| !!! | TTTGTCTTTAGAAATTGAAT+AGG | - | chr3_4:50126441-50126460 | Msa0504950:intron | 20.0% |
| !! | CTATATAATTACCTGAATAA+TGG | + | chr3_4:50126512-50126531 | None:intergenic | 20.0% |
| ! | TTTGATTGATTGTTGTACAA+TGG | + | chr3_4:50125061-50125080 | None:intergenic | 25.0% |
| ! | AAAATGGATGGAAAATGAAA+AGG | - | chr3_4:50125104-50125123 | Msa0504950:CDS | 25.0% |
| ! | AAATGGATGGAAAATGAAAA+GGG | - | chr3_4:50125105-50125124 | Msa0504950:CDS | 25.0% |
| ! | TTGAATTTGGAGAGAAAAAT+AGG | + | chr3_4:50125263-50125282 | None:intergenic | 25.0% |
| !! | GTTGCATTTTATTGTGTTAA+GGG | - | chr3_4:50125526-50125545 | Msa0504950:intron | 25.0% |
| ! | ACAACTCTTTACTTATGAAA+TGG | + | chr3_4:50125916-50125935 | None:intergenic | 25.0% |
| !! | TTAGCTTAACAAAGTTTTTC+TGG | + | chr3_4:50126276-50126295 | None:intergenic | 25.0% |
| ! | CTAAAAGATAAATCTTAACC+AGG | - | chr3_4:50126292-50126311 | Msa0504950:intron | 25.0% |
| ! | GCAAATCAGCAATTATATAA+TGG | + | chr3_4:50126367-50126386 | None:intergenic | 25.0% |
| ! | AAACTAGTACATATATCCAT+TGG | - | chr3_4:50126464-50126483 | Msa0504950:intron | 25.0% |
| ! | AAGAAAGATCATTCAACAAA+AGG | + | chr3_4:50126581-50126600 | None:intergenic | 25.0% |
| !! | AGTAATATCCATTTTGTATC+AGG | + | chr3_4:50126875-50126894 | None:intergenic | 25.0% |
| !! | GTATACTTTAGATACTGATT+TGG | + | chr3_4:50126954-50126973 | None:intergenic | 25.0% |
| ! | TAGTCATTGTTAATATGCTA+GGG | - | chr3_4:50126986-50127005 | Msa0504950:intron | 25.0% |
| ! | TTCCAAAATCTTAAAGTTGT+TGG | - | chr3_4:50127428-50127447 | Msa0504950:CDS | 25.0% |
| !!! | ATCCAACAACTTTAAGATTT+TGG | + | chr3_4:50127433-50127452 | None:intergenic | 25.0% |
| ! | GTTGGATGAAAATACATAAT+CGG | - | chr3_4:50127446-50127465 | Msa0504950:CDS | 25.0% |
| ATTGATTGTTGTACAATGGA+AGG | + | chr3_4:50125057-50125076 | None:intergenic | 30.0% | |
| GTACAACAATCAATCAAAGA+AGG | - | chr3_4:50125063-50125082 | Msa0504950:CDS | 30.0% | |
| AACAATCAATCAAAGAAGGT+TGG | - | chr3_4:50125067-50125086 | Msa0504950:CDS | 30.0% | |
| AATGGATGGAAAATGAAAAG+GGG | - | chr3_4:50125106-50125125 | Msa0504950:CDS | 30.0% | |
| ATAGGAGAAGAATGAGAAAT+GGG | + | chr3_4:50125245-50125264 | None:intergenic | 30.0% | |
| AATAGGAGAAGAATGAGAAA+TGG | + | chr3_4:50125246-50125265 | None:intergenic | 30.0% | |
| ! | AGGAAAAATGGGTTTGAATT+TGG | + | chr3_4:50125276-50125295 | None:intergenic | 30.0% |
| ! | AAAAAGAGGACTTTTTGATC+AGG | - | chr3_4:50125460-50125479 | Msa0504950:CDS | 30.0% |
| ! | GGTTGCATTTTATTGTGTTA+AGG | - | chr3_4:50125525-50125544 | Msa0504950:intron | 30.0% |
| ! | TCTGATTTTATGTTGCTCAT+GGG | - | chr3_4:50125582-50125601 | Msa0504950:intron | 30.0% |
| TAAGACAAAAAGTTGTGTTG+TGG | + | chr3_4:50125674-50125693 | None:intergenic | 30.0% | |
| ! | TTTTTGTCTTGTACGATGTT+TGG | + | chr3_4:50125738-50125757 | None:intergenic | 30.0% |
| TCGATACCTTAAAAGTTTGT+CGG | - | chr3_4:50125763-50125782 | Msa0504950:intron | 30.0% | |
| TGAAACACACCTTAAATTTC+TGG | - | chr3_4:50125847-50125866 | Msa0504950:intron | 30.0% | |
| CTTGGAAATCCAGAAATTTA+AGG | + | chr3_4:50125859-50125878 | None:intergenic | 30.0% | |
| ! | CTTAAATTTCTGGATTTCCA+AGG | - | chr3_4:50125857-50125876 | Msa0504950:intron | 30.0% |
| ATTCATTGTGATTTAACGCT+TGG | - | chr3_4:50126106-50126125 | Msa0504950:intron | 30.0% | |
| AGCTATTATAAGAAGCTTCA+TGG | + | chr3_4:50126186-50126205 | None:intergenic | 30.0% | |
| TCTGGATAGAAGTTAGATAA+AGG | + | chr3_4:50126258-50126277 | None:intergenic | 30.0% | |
| TTCCGGGAGTTAATATATTT+CGG | - | chr3_4:50126648-50126667 | Msa0504950:intron | 30.0% | |
| ATCCGAAATATATTAACTCC+CGG | + | chr3_4:50126653-50126672 | None:intergenic | 30.0% | |
| TACTTCAGAGACTTAATTGA+GGG | + | chr3_4:50126920-50126939 | None:intergenic | 30.0% | |
| ATACTTCAGAGACTTAATTG+AGG | + | chr3_4:50126921-50126940 | None:intergenic | 30.0% | |
| GTAGTCATTGTTAATATGCT+AGG | - | chr3_4:50126985-50127004 | Msa0504950:intron | 30.0% | |
| CTTTACGTTATTCCTTCATT+TGG | - | chr3_4:50127178-50127197 | Msa0504950:intron | 30.0% | |
| ! | CGTTTGCATCGATAATATAT+TGG | - | chr3_4:50127265-50127284 | Msa0504950:CDS | 30.0% |
| CAAATTACATATTGCAGCAA+TGG | + | chr3_4:50127307-50127326 | None:intergenic | 30.0% | |
| TACATAGGACTAAAAGCAAT+TGG | + | chr3_4:50127360-50127379 | None:intergenic | 30.0% | |
| TTAGTCCTATGTACTGAATT+AGG | - | chr3_4:50127367-50127386 | Msa0504950:CDS | 30.0% | |
| ! | GGAATATTTAGCTTATGACA+TGG | + | chr3_4:50127412-50127431 | None:intergenic | 30.0% |
| AAGGAGAAAATCATGTTCTA+GGG | + | chr3_4:50127519-50127538 | None:intergenic | 30.0% | |
| AAAGGAGAAAATCATGTTCT+AGG | + | chr3_4:50127520-50127539 | None:intergenic | 30.0% | |
| !!! | TAGGACTTGTTTTTGTTGTA+AGG | + | chr3_4:50127607-50127626 | None:intergenic | 30.0% |
| GAAGAAGTGAGAGGAAAAAT+GGG | + | chr3_4:50125287-50125306 | None:intergenic | 35.0% | |
| AGAAGAAGTGAGAGGAAAAA+TGG | + | chr3_4:50125288-50125307 | None:intergenic | 35.0% | |
| CAACGAAATCAGAAAGCAAA+GGG | + | chr3_4:50125382-50125401 | None:intergenic | 35.0% | |
| ! | GTCTGATTTTATGTTGCTCA+TGG | - | chr3_4:50125581-50125600 | Msa0504950:intron | 35.0% |
| ! | CCTTATCCGACAAACTTTTA+AGG | + | chr3_4:50125772-50125791 | None:intergenic | 35.0% |
| CCTTAAAAGTTTGTCGGATA+AGG | - | chr3_4:50125769-50125788 | Msa0504950:intron | 35.0% | |
| TAATAGCTTCCTGCATAAGA+TGG | - | chr3_4:50126198-50126217 | Msa0504950:CDS | 35.0% | |
| ! | ACTAGTGCTATCTTTGAAAG+AGG | - | chr3_4:50126315-50126334 | Msa0504950:intron | 35.0% |
| ! | CTAGTGCTATCTTTGAAAGA+GGG | - | chr3_4:50126316-50126335 | Msa0504950:intron | 35.0% |
| AGTACATATATCCATTGGAC+TGG | - | chr3_4:50126469-50126488 | Msa0504950:intron | 35.0% | |
| GTGAAATCAATGAGCAGATT+TGG | - | chr3_4:50126713-50126732 | Msa0504950:intron | 35.0% | |
| TGAGCAGATTTGGAGATTAT+AGG | - | chr3_4:50126723-50126742 | Msa0504950:intron | 35.0% | |
| AATCCTACTTTACTGTCATG+TGG | - | chr3_4:50126824-50126843 | Msa0504950:intron | 35.0% | |
| TAACCACATGACAGTAAAGT+AGG | + | chr3_4:50126830-50126849 | None:intergenic | 35.0% | |
| AATCCAGACCTGATACAAAA+TGG | - | chr3_4:50126864-50126883 | Msa0504950:intron | 35.0% | |
| ! | TATCCATTTTGTATCAGGTC+TGG | + | chr3_4:50126870-50126889 | None:intergenic | 35.0% |
| !! | GAGGGTTTATTTTCACAGAT+AGG | + | chr3_4:50126902-50126921 | None:intergenic | 35.0% |
| ! | GCAATATGTAATTTGTGTGC+AGG | - | chr3_4:50127312-50127331 | Msa0504950:CDS | 35.0% |
| CATTGCCTAATTCAGTACAT+AGG | + | chr3_4:50127375-50127394 | None:intergenic | 35.0% | |
| AGGAGAAAATCATGTTCTAG+GGG | + | chr3_4:50127518-50127537 | None:intergenic | 35.0% | |
| AGAGGGAATTGAGTCAAACT+TGG | + | chr3_4:50125195-50125214 | None:intergenic | 40.0% | |
| AAGAATGAGAAATGGGTGTG+AGG | + | chr3_4:50125238-50125257 | None:intergenic | 40.0% | |
| GCAACGAAATCAGAAAGCAA+AGG | + | chr3_4:50125383-50125402 | None:intergenic | 40.0% | |
| ! | CTGTTTCTTGTCTTAGAGTG+TGG | - | chr3_4:50125426-50125445 | Msa0504950:CDS | 40.0% |
| TGGCAAGAAACTGCAAAAAG+AGG | - | chr3_4:50125446-50125465 | Msa0504950:CDS | 40.0% | |
| TGTCTTGTACGATGTTTGGT+AGG | + | chr3_4:50125734-50125753 | None:intergenic | 40.0% | |
| AAGCTCATTCCATCTTATGC+AGG | + | chr3_4:50126210-50126229 | None:intergenic | 40.0% | |
| ! | AGGAGCTTCTAAAAGAGTTC+AGG | + | chr3_4:50126238-50126257 | None:intergenic | 40.0% |
| TTCAAAGATAGCACTAGTCC+TGG | + | chr3_4:50126313-50126332 | None:intergenic | 40.0% | |
| ! | CTTTGAAAGAGGGTAATGCT+TGG | - | chr3_4:50126326-50126345 | Msa0504950:intron | 40.0% |
| TAGCATGAATACCAGTCCAA+TGG | + | chr3_4:50126483-50126502 | None:intergenic | 40.0% | |
| GACTGGTATTCATGCTATGT+TGG | - | chr3_4:50126486-50126505 | Msa0504950:intron | 40.0% | |
| TGCTATGTTGGCCATTATTC+AGG | - | chr3_4:50126498-50126517 | Msa0504950:intron | 40.0% | |
| ATTATTGCAGCAATGACCGA+TGG | - | chr3_4:50126603-50126622 | Msa0504950:intron | 40.0% | |
| TTATTGCAGCAATGACCGAT+GGG | - | chr3_4:50126604-50126623 | Msa0504950:intron | 40.0% | |
| ATATTTCGGATGCTTGTGAC+TGG | - | chr3_4:50126662-50126681 | Msa0504950:intron | 40.0% | |
| !! | TCTGCTCATTGATTTCACAG+TGG | + | chr3_4:50126711-50126730 | None:intergenic | 40.0% |
| TTACTGTCATGTGGTTATGC+TGG | - | chr3_4:50126833-50126852 | Msa0504950:intron | 40.0% | |
| GAAGAAGTGAGACCAAATGA+AGG | + | chr3_4:50127193-50127212 | None:intergenic | 40.0% | |
| TCACTTCTTCATTTGCACCA+GGG | - | chr3_4:50127203-50127222 | Msa0504950:intron | 40.0% | |
| ATCGTTGCAGCATAATACAG+TGG | + | chr3_4:50127243-50127262 | None:intergenic | 40.0% | |
| CATATTGCAGCAATGGAAAC+AGG | + | chr3_4:50127300-50127319 | None:intergenic | 40.0% | |
| ! | TGTAATTTGTGTGCAGGAGA+TGG | - | chr3_4:50127318-50127337 | Msa0504950:CDS | 40.0% |
| TCGAATAAGCTGCACTTGAA+AGG | - | chr3_4:50127476-50127495 | Msa0504950:CDS | 40.0% | |
| !! | AATCATGTTCTAGGGGGATA+AGG | + | chr3_4:50127511-50127530 | None:intergenic | 40.0% |
| ! | GGAGAAAATCATGTTCTAGG+GGG | + | chr3_4:50127517-50127536 | None:intergenic | 40.0% |
| AAATCTCCTTCCAACGACAT+CGG | + | chr3_4:50127569-50127588 | None:intergenic | 40.0% | |
| AACAAAAACAAGTCCTACGC+TGG | - | chr3_4:50127610-50127629 | Msa0504950:five_prime_UTR | 40.0% | |
| GGGAATTGAGTCAAACTTGG+TGG | + | chr3_4:50125192-50125211 | None:intergenic | 45.0% | |
| AGAGGGAGAGATGAAACAGA+GGG | + | chr3_4:50125212-50125231 | None:intergenic | 45.0% | |
| AAGAGGGAGAGATGAAACAG+AGG | + | chr3_4:50125213-50125232 | None:intergenic | 45.0% | |
| AAATGGGTGTGAGGAGAAGA+GGG | + | chr3_4:50125229-50125248 | None:intergenic | 45.0% | |
| AATCAGAAAGCAAAGGGTCG+TGG | + | chr3_4:50125376-50125395 | None:intergenic | 45.0% | |
| TTCGTTGCTACAGCTATCTC+TGG | - | chr3_4:50125395-50125414 | Msa0504950:CDS | 45.0% | |
| CTCATGGGAGTCGACAAATT+GGG | - | chr3_4:50125597-50125616 | Msa0504950:intron | 45.0% | |
| TCATGGGAGTCGACAAATTG+GGG | - | chr3_4:50125598-50125617 | Msa0504950:intron | 45.0% | |
| CGTCGTACGTTGTTCATTGT+CGG | + | chr3_4:50125976-50125995 | None:intergenic | 45.0% | |
| ACAATGAACAACGTACGACG+TGG | - | chr3_4:50125976-50125995 | Msa0504950:CDS | 45.0% | |
| !! | GTTCTATGCTGCTTTGGTTC+CGG | - | chr3_4:50126631-50126650 | Msa0504950:intron | 45.0% |
| !! | TTCTATGCTGCTTTGGTTCC+GGG | - | chr3_4:50126632-50126651 | Msa0504950:intron | 45.0% |
| CTCACTTCTTCATTTGCACC+AGG | - | chr3_4:50127202-50127221 | Msa0504950:intron | 45.0% | |
| GATGTCGTTGGAAGGAGATT+TGG | - | chr3_4:50127568-50127587 | Msa0504950:five_prime_UTR | 45.0% | |
| CATTGCAATTGAACCAGCGT+AGG | + | chr3_4:50127626-50127645 | None:intergenic | 45.0% | |
| !! | CTACGCTGGTTCAATTGCAA+TGG | - | chr3_4:50127624-50127643 | Msa0504950:five_prime_UTR | 45.0% |
| TCAATTGCAATGGCATCTGC+TGG | - | chr3_4:50127634-50127653 | Msa0504950:five_prime_UTR | 45.0% | |
| AATGGCATCTGCTGGATTCT+TGG | - | chr3_4:50127642-50127661 | Msa0504950:five_prime_UTR | 45.0% | |
| CTGGATTCTTGGCTTCTGTT+GGG | - | chr3_4:50127653-50127672 | Msa0504950:five_prime_UTR | 45.0% | |
| !!! | TTATTATTTTAATATACTTT+AGG | - | chr3_4:50127073-50127092 | Msa0504950:intron | 5.0% |
| !!! | TATTATTTTAATATACTTTA+GGG | - | chr3_4:50127074-50127093 | Msa0504950:intron | 5.0% |
| GAAATGGGTGTGAGGAGAAG+AGG | + | chr3_4:50125230-50125249 | None:intergenic | 50.0% | |
| GAGGAGGAAGAAGAAGTGAG+AGG | + | chr3_4:50125296-50125315 | None:intergenic | 50.0% | |
| GGGAGAAGAAAACAAGGAGG+AGG | + | chr3_4:50125312-50125331 | None:intergenic | 50.0% | |
| GGTGGGAGAAGAAAACAAGG+AGG | + | chr3_4:50125315-50125334 | None:intergenic | 50.0% | |
| TGGGGTGGGAGAAGAAAACA+AGG | + | chr3_4:50125318-50125337 | None:intergenic | 50.0% | |
| ! | ATGGGAGTTTCCGGGGTATT+GGG | + | chr3_4:50125337-50125356 | None:intergenic | 50.0% |
| TAGTGGCAGATGGGAGTTTC+CGG | + | chr3_4:50125346-50125365 | None:intergenic | 50.0% | |
| GGTGAAGCATAGTGGCAGAT+GGG | + | chr3_4:50125355-50125374 | None:intergenic | 50.0% | |
| TGGTGAAGCATAGTGGCAGA+TGG | + | chr3_4:50125356-50125375 | None:intergenic | 50.0% | |
| GCTCATGGGAGTCGACAAAT+TGG | - | chr3_4:50125596-50125615 | Msa0504950:intron | 50.0% | |
| AGTCGACAAATTGGGGCGTA+AGG | - | chr3_4:50125605-50125624 | Msa0504950:intron | 50.0% | |
| GTCGACAAATTGGGGCGTAA+GGG | - | chr3_4:50125606-50125625 | Msa0504950:intron | 50.0% | |
| CAAATTGGGGCGTAAGGGAT+CGG | - | chr3_4:50125611-50125630 | Msa0504950:intron | 50.0% | |
| CAGCATAGAACGATGCCCAT+CGG | + | chr3_4:50126622-50126641 | None:intergenic | 50.0% | |
| ! | GGCATCGTTCTATGCTGCTT+TGG | - | chr3_4:50126625-50126644 | Msa0504950:intron | 50.0% |
| TTTGCACCAGGGAGCTTCTT+AGG | - | chr3_4:50127214-50127233 | Msa0504950:intron | 50.0% | |
| TTGCACCAGGGAGCTTCTTA+GGG | - | chr3_4:50127215-50127234 | Msa0504950:intron | 50.0% | |
| GTCGTTGGAAGGAGATTTGG+TGG | - | chr3_4:50127571-50127590 | Msa0504950:five_prime_UTR | 50.0% | |
| GCTGGATTCTTGGCTTCTGT+TGG | - | chr3_4:50127652-50127671 | Msa0504950:five_prime_UTR | 50.0% | |
| !! | AGTTTCCGGGGTATTGGGGT+GGG | + | chr3_4:50125332-50125351 | None:intergenic | 55.0% |
| !! | TGGGAGTTTCCGGGGTATTG+GGG | + | chr3_4:50125336-50125355 | None:intergenic | 55.0% |
| GATGGGAGTTTCCGGGGTAT+TGG | + | chr3_4:50125338-50125357 | None:intergenic | 55.0% | |
| AGTGGCAGATGGGAGTTTCC+GGG | + | chr3_4:50125345-50125364 | None:intergenic | 55.0% | |
| AGGGTCGTGGTGAAGCATAG+TGG | + | chr3_4:50125363-50125382 | None:intergenic | 55.0% | |
| CGGATGCTTGTGACTGGACT+TGG | - | chr3_4:50126668-50126687 | Msa0504950:intron | 55.0% | |
| TGCACCAGGGAGCTTCTTAG+GGG | - | chr3_4:50127216-50127235 | Msa0504950:intron | 55.0% | |
| TCAGGTATGGCCGATGTCGT+TGG | - | chr3_4:50127556-50127575 | Msa0504950:five_prime_UTR | 55.0% | |
| GTATGGCCGATGTCGTTGGA+AGG | - | chr3_4:50127560-50127579 | Msa0504950:five_prime_UTR | 55.0% | |
| CTTCTCCCACCCCAATACCC+CGG | - | chr3_4:50125324-50125343 | Msa0504950:intron | 60.0% | |
| !! | GAGTTTCCGGGGTATTGGGG+TGG | + | chr3_4:50125333-50125352 | None:intergenic | 60.0% |
| GTGGCAGATGGGAGTTTCCG+GGG | + | chr3_4:50125344-50125363 | None:intergenic | 60.0% | |
| TGGTCCCCTAAGAAGCTCCC+TGG | + | chr3_4:50127223-50127242 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 50125037 | 50127678 | 50125037 | ID=Msa0504950;Name=Msa0504950 |
| chr3_4 | mRNA | 50125037 | 50127678 | 50125037 | ID=Msa0504950-mRNA-1;Parent=Msa0504950;Name=Msa0504950-mRNA-1;_AED=0.29;_eAED=0.29;_QI=127|1|0.8|1|1|1|5|0|250 |
| chr3_4 | exon | 50125037 | 50125155 | 50125037 | ID=Msa0504950-mRNA-1:exon:10845;Parent=Msa0504950-mRNA-1 |
| chr3_4 | exon | 50125376 | 50125491 | 50125376 | ID=Msa0504950-mRNA-1:exon:10844;Parent=Msa0504950-mRNA-1 |
| chr3_4 | exon | 50125971 | 50126102 | 50125971 | ID=Msa0504950-mRNA-1:exon:10843;Parent=Msa0504950-mRNA-1 |
| chr3_4 | exon | 50126196 | 50126263 | 50126196 | ID=Msa0504950-mRNA-1:exon:10842;Parent=Msa0504950-mRNA-1 |
| chr3_4 | exon | 50127234 | 50127678 | 50127234 | ID=Msa0504950-mRNA-1:exon:10841;Parent=Msa0504950-mRNA-1 |
| chr3_4 | five_prime_UTR | 50127552 | 50127678 | 50127552 | ID=Msa0504950-mRNA-1:five_prime_utr;Parent=Msa0504950-mRNA-1 |
| chr3_4 | CDS | 50127234 | 50127551 | 50127234 | ID=Msa0504950-mRNA-1:cds;Parent=Msa0504950-mRNA-1 |
| chr3_4 | CDS | 50126196 | 50126263 | 50126196 | ID=Msa0504950-mRNA-1:cds;Parent=Msa0504950-mRNA-1 |
| chr3_4 | CDS | 50125971 | 50126102 | 50125971 | ID=Msa0504950-mRNA-1:cds;Parent=Msa0504950-mRNA-1 |
| chr3_4 | CDS | 50125376 | 50125491 | 50125376 | ID=Msa0504950-mRNA-1:cds;Parent=Msa0504950-mRNA-1 |
| chr3_4 | CDS | 50125037 | 50125155 | 50125037 | ID=Msa0504950-mRNA-1:cds;Parent=Msa0504950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
