AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0509590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0509590 MtrunA17_Chr3g0114621 69.949 396 56 7 20 353 18 412 2.63e-161 457
Msa0509590 MtrunA17_Chr4g0052691 35.533 197 105 9 64 251 142 325 4.60e-16 78.6
Msa0509590 MtrunA17_Chr4g0052691 32.237 152 94 6 31 177 40 187 1.21e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0509590 AT1G21880.2 54.656 247 102 5 88 328 155 397 1.40e-79 249
Msa0509590 AT1G21880.2 73.548 155 39 2 6 159 9 162 1.82e-72 231
Msa0509590 AT1G21880.1 74.026 154 38 2 7 159 10 162 1.03e-73 231
Msa0509590 AT1G21880.1 57.576 165 63 4 88 249 155 315 2.42e-53 179
Msa0509590 AT1G77630.1 69.375 160 47 2 1 159 1 159 3.03e-68 220
Msa0509590 AT1G77630.1 46.154 221 112 3 64 281 128 344 3.76e-61 202
Msa0509590 AT2G17120.1 26.846 298 139 12 32 262 34 319 9.09e-18 83.6

Find 120 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGAAAGATTCTGCTGATTT+TGG 0.106349 3_4:+58033572 Msa0509590:CDS
CTGGAAAACTATGGGATTTC+GGG 0.147948 3_4:+58035150 Msa0509590:three_prime_UTR
TAGTTAGTACTTTAAGTTTC+GGG 0.197294 3_4:-58033660 None:intergenic
ACTTACGATGGTATTGTTAA+TGG 0.220792 3_4:+58034054 Msa0509590:CDS
AGAAACCAAACCACCGTAAA+TGG 0.233685 3_4:-58033315 None:intergenic
CCTATTAGTGGAATTTCTTC+TGG 0.250006 3_4:+58034929 Msa0509590:CDS
AATTAAACCCACCACAAAAT+TGG 0.251149 3_4:-58035053 None:intergenic
TGAAGGCACCACAGAGGATT+TGG 0.255853 3_4:-58034882 None:intergenic
TCCATTGCTGATTCCATTTA+CGG 0.257896 3_4:+58033302 Msa0509590:CDS
CCAGAAGAAATTCCACTAAT+AGG 0.262408 3_4:-58034929 None:intergenic
TCTGGAAAACTATGGGATTT+CGG 0.263536 3_4:+58035149 Msa0509590:three_prime_UTR
GCAAAACACCAAGTAATAAA+AGG 0.307587 3_4:-58035190 None:intergenic
ATCCAATGCTCTTGTGTAGA+TGG 0.340492 3_4:+58033224 Msa0509590:CDS
GTAATAGCATAACTTCCATT+AGG 0.342017 3_4:-58033605 None:intergenic
TCCTCTGTGGTGCCTTCAAC+AGG 0.356949 3_4:+58034887 Msa0509590:CDS
CTAGTTAGTACTTTAAGTTT+CGG 0.357538 3_4:-58033661 None:intergenic
GGAGTGAGATTGGGTCGATT+TGG 0.363301 3_4:-58033121 None:intergenic
ACAGGATTTACTCCTGCATT+AGG 0.364823 3_4:+58034905 Msa0509590:CDS
TGGATTACCAAGGGAATTAG+AGG 0.380096 3_4:-58035341 None:intergenic
TTTGGATTGCTTGTCCCTAA+TGG 0.380603 3_4:+58033590 Msa0509590:CDS
AGTTGGTTGAAACGGATTTA+CGG 0.389519 3_4:-58033250 None:intergenic
TTGGAAGAGGGAAGAGAGTT+CGG 0.393201 3_4:-58033102 None:intergenic
AGGGAATTAGAGGGTTGATA+TGG 0.394450 3_4:-58035331 None:intergenic
CAGAAGAAATTCCACTAATA+GGG 0.397850 3_4:-58034928 None:intergenic
TAGAAGTTTCAAGAAATTGA+TGG 0.401210 3_4:+58035273 Msa0509590:three_prime_UTR
GAAGGCACCACAGAGGATTT+GGG 0.408599 3_4:-58034881 None:intergenic
TGATTCCATTTACGGTGGTT+TGG 0.412509 3_4:+58033310 Msa0509590:CDS
AAGAGAGTTCGGAGACTTTG+AGG 0.415021 3_4:-58033091 None:intergenic
CCAAAATCAGCAGAATCTTT+CGG 0.426265 3_4:-58033572 None:intergenic
GACTTTGAGGTCTGTGTAAA+GGG 0.426806 3_4:-58033078 None:intergenic
TGCTTCTGCCGCATGCTCCT+TGG 0.430716 3_4:+58034952 Msa0509590:CDS
CTGCAGTTTGTACTGTATGC+CGG 0.442769 3_4:+58033924 Msa0509590:intron
TTTGCGGTGAGGAGTGAGAT+TGG 0.445485 3_4:-58033131 None:intergenic
TAATAGCATAACTTCCATTA+GGG 0.446734 3_4:-58033604 None:intergenic
TTGGAAGATTACAATGCTAC+AGG 0.447582 3_4:-58035034 None:intergenic
TCCCTTCAGCCTCGATGTCC+AGG 0.453460 3_4:+58034213 Msa0509590:CDS
AGGATGTGGTGTTCAACGTC+AGG 0.457861 3_4:-58033173 None:intergenic
GGACATCGAGGCTGAAGGGA+TGG 0.461392 3_4:-58034210 None:intergenic
TTTCGGAAACTTTGATGCAC+AGG 0.472926 3_4:-58033555 None:intergenic
CTACACAAGAGCATTGGATT+GGG 0.473341 3_4:-58033220 None:intergenic
GATTGGGTCGATTTGGAAGA+GGG 0.474484 3_4:-58033114 None:intergenic
ATTGTGAATCTGGAAAACTA+TGG 0.477956 3_4:+58035141 Msa0509590:three_prime_UTR
CACAAGTGTGAGTGTCAAAG+TGG 0.484069 3_4:-58034987 None:intergenic
GTCAGGGTAAGAGATGTCTA+TGG 0.484187 3_4:-58033156 None:intergenic
GACATCGAGGCTGAAGGGAT+GGG 0.484842 3_4:-58034209 None:intergenic
TTGCGGTGAGGAGTGAGATT+GGG 0.488292 3_4:-58033130 None:intergenic
AAATGATTCTGCAGGGTCGC+AGG 0.490594 3_4:+58034754 Msa0509590:intron
TTTAATTATGTCTTTGCCAC+GGG 0.492338 3_4:+58035069 Msa0509590:three_prime_UTR
CCTGCATTAGGCCCTATTAG+TGG 0.495717 3_4:+58034917 Msa0509590:CDS
AGACTTTGAGGTCTGTGTAA+AGG 0.497415 3_4:-58033079 None:intergenic
TGACCAACATCAAGAACATT+CGG 0.502470 3_4:-58033374 None:intergenic
AGATTGGGTCGATTTGGAAG+AGG 0.504644 3_4:-58033115 None:intergenic
TCTACACAAGAGCATTGGAT+TGG 0.505313 3_4:-58033221 None:intergenic
ACTGGAACACAGCTGAACTC+TGG 0.510847 3_4:-58035361 None:intergenic
ATAAACATACGTTGTTGCTA+TGG 0.512893 3_4:-58034079 None:intergenic
TTCCATCTACACAAGAGCAT+TGG 0.513503 3_4:-58033226 None:intergenic
AGAGATGTCTATGGAGTTTG+CGG 0.514050 3_4:-58033147 None:intergenic
CAAGAAACAGCTAGAGAAGC+CGG 0.517121 3_4:-58033943 None:intergenic
ACTGTAGGTGGGGCAATAAG+AGG 0.525551 3_4:-58034785 None:intergenic
TACTAGCAACTACAATAGAT+AGG 0.526908 3_4:-58035096 None:intergenic
CTCTCGGAACAACTGTAGGT+GGG 0.529796 3_4:-58034796 None:intergenic
TATCAACCCTCTAATTCCCT+TGG 0.531169 3_4:+58035334 Msa0509590:three_prime_UTR
GGAAGTTATGCTATTACAGC+AGG 0.534448 3_4:+58033611 Msa0509590:CDS
TCACTGTTAGACGGAACTGA+TGG 0.535200 3_4:+58034851 Msa0509590:CDS
AAGAACAGCAATCTTATGCT+TGG 0.538547 3_4:+58033982 Msa0509590:CDS
GATCCGAATGTTCTTGATGT+TGG 0.538981 3_4:+58033371 Msa0509590:CDS
GCAGGAGTAAATCCTGTTGA+AGG 0.542272 3_4:-58034899 None:intergenic
ACATCGAGGCTGAAGGGATG+GGG 0.543885 3_4:-58034208 None:intergenic
AGTGATGATGGTGACGGGGC+CGG 0.545632 3_4:-58034833 None:intergenic
GTTTAATTATGTCTTTGCCA+CGG 0.547059 3_4:+58035068 Msa0509590:three_prime_UTR
GTTCCGTCTAACAGTGATGA+TGG 0.555050 3_4:-58034845 None:intergenic
CTAACAGTGATGATGGTGAC+GGG 0.561054 3_4:-58034838 None:intergenic
ACCTGGACATCGAGGCTGAA+GGG 0.562410 3_4:-58034214 None:intergenic
GTGAGTGTCAAAGTGGGTAA+TGG 0.562630 3_4:-58034980 None:intergenic
TCTCTCGGAACAACTGTAGG+TGG 0.562704 3_4:-58034797 None:intergenic
GATTCTCTCGGAACAACTGT+AGG 0.566259 3_4:-58034800 None:intergenic
CATGTGTCGGAGGTTGTGCA+TGG 0.570050 3_4:-58033035 None:intergenic
CACTGTGTGCAGTGTAGCTG+TGG 0.570591 3_4:+58033635 Msa0509590:CDS
GACACATGCAACTCTCTCCT+AGG 0.572176 3_4:+58033050 Msa0509590:CDS
CATCTAGGGTCAGTAATTCA+AGG 0.577728 3_4:+58035227 Msa0509590:three_prime_UTR
TTGTGAATCTGGAAAACTAT+GGG 0.578481 3_4:+58035142 Msa0509590:three_prime_UTR
GAGAGAATCATTATTTGCAC+CGG 0.587839 3_4:+58034814 Msa0509590:CDS
AGTTAGTACTTTAAGTTTCG+GGG 0.588423 3_4:-58033659 None:intergenic
CCACTAATAGGGCCTAATGC+AGG 0.590231 3_4:-58034917 None:intergenic
ACCGTAAATGGAATCAGCAA+TGG 0.590982 3_4:-58033303 None:intergenic
GACCTGGACATCGAGGCTGA+AGG 0.592508 3_4:-58034215 None:intergenic
CACTGTTAGACGGAACTGAT+GGG 0.592672 3_4:+58034852 Msa0509590:CDS
GGTGCAAATAATGATTCTCT+CGG 0.600611 3_4:-58034812 None:intergenic
CTGTGTAAAGGGTATAACCT+AGG 0.601525 3_4:-58033067 None:intergenic
TAGAGAAGCTAACTCTGTAA+CGG 0.601846 3_4:+58033349 Msa0509590:CDS
GGATTACCAAGGGAATTAGA+GGG 0.608658 3_4:-58035340 None:intergenic
TTGTTGTGAAGAGTTTGAAG+AGG 0.612993 3_4:-58032989 None:intergenic
TCTCGGAACAACTGTAGGTG+GGG 0.613496 3_4:-58034795 None:intergenic
GTGACTTCTTGCACTTACGA+TGG 0.618130 3_4:+58034042 Msa0509590:CDS
TCACCATCATCACTGTTAGA+CGG 0.618411 3_4:+58034842 Msa0509590:CDS
ATGAAAGTGTGTCAGAAGGA+CGG 0.622921 3_4:-58033280 None:intergenic
GAGAGAGTTGCATGTGTCGG+AGG 0.625658 3_4:-58033045 None:intergenic
TCTAACAGTGATGATGGTGA+CGG 0.628578 3_4:-58034839 None:intergenic
TGGTTTCACCAAGGAGCATG+CGG 0.631030 3_4:-58034960 None:intergenic
TAGGAGAGAGTTGCATGTGT+CGG 0.631053 3_4:-58033048 None:intergenic
ATGGATGAAAGTGTGTCAGA+AGG 0.633561 3_4:-58033284 None:intergenic
GTAGGTGGGGCAATAAGAGG+AGG 0.642569 3_4:-58034782 None:intergenic
AGCTGAACTCTGGATTACCA+AGG 0.642917 3_4:-58035351 None:intergenic
GGATGTGGTGTTCAACGTCA+GGG 0.644081 3_4:-58033172 None:intergenic
ATTGCTGATTCCATTTACGG+TGG 0.644415 3_4:+58033305 Msa0509590:CDS
ACCACCGCTAGTCTGTTGCA+CGG 0.650410 3_4:-58034013 None:intergenic
AAGTTTCAAGAAATTGATGG+TGG 0.659079 3_4:+58035276 Msa0509590:three_prime_UTR
ACAAGTGTGAGTGTCAAAGT+GGG 0.665438 3_4:-58034986 None:intergenic
TGGAAGATTACAATGCTACA+GGG 0.666760 3_4:-58035033 None:intergenic
ACAATAGATAGGAGCACCCG+TGG 0.672332 3_4:-58035085 None:intergenic
GCTGAACTCTGGATTACCAA+GGG 0.673111 3_4:-58035350 None:intergenic
TAGGTGGGGCAATAAGAGGA+GGG 0.677365 3_4:-58034781 None:intergenic
GCGCACTGACCTGGACATCG+AGG 0.683172 3_4:-58034222 None:intergenic
TGTCTATGGAGTTTGCGGTG+AGG 0.696874 3_4:-58033142 None:intergenic
TAACAGTGATGATGGTGACG+GGG 0.706304 3_4:-58034837 None:intergenic
ACCGTGCAACAGACTAGCGG+TGG 0.715686 3_4:+58034012 Msa0509590:CDS
TCCTGTTGAAGGCACCACAG+AGG 0.718699 3_4:-58034888 None:intergenic
GAGATCACCCAAATCCTCTG+TGG 0.727132 3_4:+58034874 Msa0509590:CDS
GTTACCGTGCAACAGACTAG+CGG 0.732052 3_4:+58034009 Msa0509590:CDS
AGTGGGTAATGGTTTCACCA+AGG 0.735083 3_4:-58034969 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTGTATATATGTATATATA+GGG + chr3_4:58034251-58034270 Msa0509590:intron 15.0%
!! CTTGTATATATGTATATATA+GGG + chr3_4:58034251-58034270 Msa0509590:intron 15.0%
!! ATTTATGTATAAAGAGAGTA+AGG - chr3_4:58033718-58033737 None:intergenic 20.0%
!!! ATAAATCTAGATTCTTTTGT+AGG + chr3_4:58033732-58033751 Msa0509590:intron 20.0%
!!! TAAATCTAGATTCTTTTGTA+GGG + chr3_4:58033733-58033752 Msa0509590:intron 20.0%
!!! AAAATGTTGGTGTTAATTTA+AGG + chr3_4:58033782-58033801 Msa0509590:intron 20.0%
!! AATATTCTCAATCTCAAAAA+TGG - chr3_4:58033873-58033892 None:intergenic 20.0%
!! CCTATATATACATATATACA+AGG - chr3_4:58034253-58034272 None:intergenic 20.0%
!! CCTTGTATATATGTATATAT+AGG + chr3_4:58034250-58034269 Msa0509590:intron 20.0%
!! ATAACAGTAGATAAATCATT+CGG - chr3_4:58034354-58034373 None:intergenic 20.0%
!! CATCACTTAAATATGAATTA+CGG - chr3_4:58034642-58034661 None:intergenic 20.0%
!! ATTTATGTATAAAGAGAGTA+AGG - chr3_4:58033718-58033737 None:intergenic 20.0%
!!! ATAAATCTAGATTCTTTTGT+AGG + chr3_4:58033732-58033751 Msa0509590:intron 20.0%
!!! TAAATCTAGATTCTTTTGTA+GGG + chr3_4:58033733-58033752 Msa0509590:intron 20.0%
!!! AAAATGTTGGTGTTAATTTA+AGG + chr3_4:58033782-58033801 Msa0509590:intron 20.0%
!! AATATTCTCAATCTCAAAAA+TGG - chr3_4:58033873-58033892 None:intergenic 20.0%
!! CCTATATATACATATATACA+AGG - chr3_4:58034253-58034272 None:intergenic 20.0%
!! CCTTGTATATATGTATATAT+AGG + chr3_4:58034250-58034269 Msa0509590:intron 20.0%
!! ATAACAGTAGATAAATCATT+CGG - chr3_4:58034354-58034373 None:intergenic 20.0%
!! CATCACTTAAATATGAATTA+CGG - chr3_4:58034642-58034661 None:intergenic 20.0%
! NNNNNNNAAGTACAAGGAAG+AGG - chr3_4:58033413-58033432 None:intergenic 25.0%
! TAATAGCATAACTTCCATTA+GGG - chr3_4:58033607-58033626 None:intergenic 25.0%
!! TAGTTAGTACTTTAAGTTTC+GGG - chr3_4:58033663-58033682 None:intergenic 25.0%
!! CTAGTTAGTACTTTAAGTTT+CGG - chr3_4:58033664-58033683 None:intergenic 25.0%
! ATATCTAGTGGTACTTAATT+TGG - chr3_4:58034405-58034424 None:intergenic 25.0%
!! CATTTTATCTACTTGAACAT+GGG + chr3_4:58034434-58034453 Msa0509590:intron 25.0%
! CATACAAAAATCATGAAAAG+TGG - chr3_4:58034530-58034549 None:intergenic 25.0%
! ATTCATATTTAAGTGATGCA+AGG + chr3_4:58034644-58034663 Msa0509590:intron 25.0%
! ATACTTATTGCTATGTTTCA+TGG - chr3_4:58034672-58034691 None:intergenic 25.0%
!!! TGTATTTTAAATGATTCTGC+AGG + chr3_4:58034746-58034765 Msa0509590:intron 25.0%
!!! GTATTTTAAATGATTCTGCA+GGG + chr3_4:58034747-58034766 Msa0509590:intron 25.0%
!! ATTGTAATCTTCCAATTTTG+TGG + chr3_4:58035042-58035061 Msa0509590:exon 25.0%
!! TGAACTATTTTGTTCATCTA+GGG + chr3_4:58035213-58035232 Msa0509590:three_prime_UTR 25.0%
! TAGAAGTTTCAAGAAATTGA+TGG + chr3_4:58035273-58035292 Msa0509590:three_prime_UTR 25.0%
! NNNNNNNAAGTACAAGGAAG+AGG - chr3_4:58033413-58033432 None:intergenic 25.0%
! TAATAGCATAACTTCCATTA+GGG - chr3_4:58033607-58033626 None:intergenic 25.0%
!! TAGTTAGTACTTTAAGTTTC+GGG - chr3_4:58033663-58033682 None:intergenic 25.0%
!! CTAGTTAGTACTTTAAGTTT+CGG - chr3_4:58033664-58033683 None:intergenic 25.0%
! ATATCTAGTGGTACTTAATT+TGG - chr3_4:58034405-58034424 None:intergenic 25.0%
!! CATTTTATCTACTTGAACAT+GGG + chr3_4:58034434-58034453 Msa0509590:intron 25.0%
! CATACAAAAATCATGAAAAG+TGG - chr3_4:58034530-58034549 None:intergenic 25.0%
! ATTCATATTTAAGTGATGCA+AGG + chr3_4:58034644-58034663 Msa0509590:intron 25.0%
! ATACTTATTGCTATGTTTCA+TGG - chr3_4:58034672-58034691 None:intergenic 25.0%
!!! TGTATTTTAAATGATTCTGC+AGG + chr3_4:58034746-58034765 Msa0509590:intron 25.0%
!!! GTATTTTAAATGATTCTGCA+GGG + chr3_4:58034747-58034766 Msa0509590:intron 25.0%
!! ATTGTAATCTTCCAATTTTG+TGG + chr3_4:58035042-58035061 Msa0509590:exon 25.0%
!! TGAACTATTTTGTTCATCTA+GGG + chr3_4:58035213-58035232 Msa0509590:three_prime_UTR 25.0%
! TAGAAGTTTCAAGAAATTGA+TGG + chr3_4:58035273-58035292 Msa0509590:three_prime_UTR 25.0%
!!! TGGTTCTATTGTTGATTTTG+AGG - chr3_4:58033018-58033037 None:intergenic 30.0%
!!! TTTTGAGGTAGAGTTTTGAA+GGG - chr3_4:58033199-58033218 None:intergenic 30.0%
!!! ATTTTGAGGTAGAGTTTTGA+AGG - chr3_4:58033200-58033219 None:intergenic 30.0%
! GATTTTGTAGTTGGTTGAAA+CGG - chr3_4:58033261-58033280 None:intergenic 30.0%
GTAATAGCATAACTTCCATT+AGG - chr3_4:58033608-58033627 None:intergenic 30.0%
! AGTTAGTACTTTAAGTTTCG+GGG - chr3_4:58033662-58033681 None:intergenic 30.0%
! CGAAACTTAAAGTACTAACT+AGG + chr3_4:58033662-58033681 Msa0509590:intron 30.0%
TGTATAAAGAGAGTAAGGTA+TGG - chr3_4:58033713-58033732 None:intergenic 30.0%
!!! TGTAGGGTCATTTTGTTTTA+AGG + chr3_4:58033749-58033768 Msa0509590:intron 30.0%
AGGAAAACGTTTGAAAATGT+TGG + chr3_4:58033769-58033788 Msa0509590:intron 30.0%
! TTTTTATGCTAAACGAATCC+AGG + chr3_4:58033813-58033832 Msa0509590:intron 30.0%
! TTTTATGCTAAACGAATCCA+GGG + chr3_4:58033814-58033833 Msa0509590:intron 30.0%
! AATATTCTGACTTGTGTATC+TGG + chr3_4:58033887-58033906 Msa0509590:intron 30.0%
! ATATTCTGACTTGTGTATCT+GGG + chr3_4:58033888-58033907 Msa0509590:intron 30.0%
ACTTACGATGGTATTGTTAA+TGG + chr3_4:58034054-58034073 Msa0509590:CDS 30.0%
ATAAACATACGTTGTTGCTA+TGG - chr3_4:58034082-58034101 None:intergenic 30.0%
ATGCTGAATAGAATATCTAG+TGG - chr3_4:58034417-58034436 None:intergenic 30.0%
! GCATTTTATCTACTTGAACA+TGG + chr3_4:58034433-58034452 Msa0509590:intron 30.0%
CAGAAGAAATTCCACTAATA+GGG - chr3_4:58034931-58034950 None:intergenic 30.0%
! TAATCTTCCAATTTTGTGGT+GGG + chr3_4:58035046-58035065 Msa0509590:exon 30.0%
AATTAAACCCACCACAAAAT+TGG - chr3_4:58035056-58035075 None:intergenic 30.0%
GTTTAATTATGTCTTTGCCA+CGG + chr3_4:58035068-58035087 Msa0509590:three_prime_UTR 30.0%
TTTAATTATGTCTTTGCCAC+GGG + chr3_4:58035069-58035088 Msa0509590:three_prime_UTR 30.0%
TACTAGCAACTACAATAGAT+AGG - chr3_4:58035099-58035118 None:intergenic 30.0%
!! CTTTTAACTGATTGTGAATC+TGG + chr3_4:58035131-58035150 Msa0509590:three_prime_UTR 30.0%
ATTGTGAATCTGGAAAACTA+TGG + chr3_4:58035141-58035160 Msa0509590:three_prime_UTR 30.0%
TTGTGAATCTGGAAAACTAT+GGG + chr3_4:58035142-58035161 Msa0509590:three_prime_UTR 30.0%
GCAAAACACCAAGTAATAAA+AGG - chr3_4:58035193-58035212 None:intergenic 30.0%
! CTGAACTATTTTGTTCATCT+AGG + chr3_4:58035212-58035231 Msa0509590:three_prime_UTR 30.0%
AAGTTTCAAGAAATTGATGG+TGG + chr3_4:58035276-58035295 Msa0509590:three_prime_UTR 30.0%
!!! TGGTTCTATTGTTGATTTTG+AGG - chr3_4:58033018-58033037 None:intergenic 30.0%
!!! TTTTGAGGTAGAGTTTTGAA+GGG - chr3_4:58033199-58033218 None:intergenic 30.0%
!!! ATTTTGAGGTAGAGTTTTGA+AGG - chr3_4:58033200-58033219 None:intergenic 30.0%
! GATTTTGTAGTTGGTTGAAA+CGG - chr3_4:58033261-58033280 None:intergenic 30.0%
GTAATAGCATAACTTCCATT+AGG - chr3_4:58033608-58033627 None:intergenic 30.0%
! AGTTAGTACTTTAAGTTTCG+GGG - chr3_4:58033662-58033681 None:intergenic 30.0%
! CGAAACTTAAAGTACTAACT+AGG + chr3_4:58033662-58033681 Msa0509590:intron 30.0%
TGTATAAAGAGAGTAAGGTA+TGG - chr3_4:58033713-58033732 None:intergenic 30.0%
!!! TGTAGGGTCATTTTGTTTTA+AGG + chr3_4:58033749-58033768 Msa0509590:intron 30.0%
AGGAAAACGTTTGAAAATGT+TGG + chr3_4:58033769-58033788 Msa0509590:intron 30.0%
! TTTTTATGCTAAACGAATCC+AGG + chr3_4:58033813-58033832 Msa0509590:intron 30.0%
! TTTTATGCTAAACGAATCCA+GGG + chr3_4:58033814-58033833 Msa0509590:intron 30.0%
! AATATTCTGACTTGTGTATC+TGG + chr3_4:58033887-58033906 Msa0509590:intron 30.0%
! ATATTCTGACTTGTGTATCT+GGG + chr3_4:58033888-58033907 Msa0509590:intron 30.0%
ACTTACGATGGTATTGTTAA+TGG + chr3_4:58034054-58034073 Msa0509590:CDS 30.0%
ATAAACATACGTTGTTGCTA+TGG - chr3_4:58034082-58034101 None:intergenic 30.0%
ATGCTGAATAGAATATCTAG+TGG - chr3_4:58034417-58034436 None:intergenic 30.0%
! GCATTTTATCTACTTGAACA+TGG + chr3_4:58034433-58034452 Msa0509590:intron 30.0%
CAGAAGAAATTCCACTAATA+GGG - chr3_4:58034931-58034950 None:intergenic 30.0%
! TAATCTTCCAATTTTGTGGT+GGG + chr3_4:58035046-58035065 Msa0509590:exon 30.0%
AATTAAACCCACCACAAAAT+TGG - chr3_4:58035056-58035075 None:intergenic 30.0%
GTTTAATTATGTCTTTGCCA+CGG + chr3_4:58035068-58035087 Msa0509590:three_prime_UTR 30.0%
TTTAATTATGTCTTTGCCAC+GGG + chr3_4:58035069-58035088 Msa0509590:three_prime_UTR 30.0%
TACTAGCAACTACAATAGAT+AGG - chr3_4:58035099-58035118 None:intergenic 30.0%
!! CTTTTAACTGATTGTGAATC+TGG + chr3_4:58035131-58035150 Msa0509590:three_prime_UTR 30.0%
ATTGTGAATCTGGAAAACTA+TGG + chr3_4:58035141-58035160 Msa0509590:three_prime_UTR 30.0%
TTGTGAATCTGGAAAACTAT+GGG + chr3_4:58035142-58035161 Msa0509590:three_prime_UTR 30.0%
GCAAAACACCAAGTAATAAA+AGG - chr3_4:58035193-58035212 None:intergenic 30.0%
! CTGAACTATTTTGTTCATCT+AGG + chr3_4:58035212-58035231 Msa0509590:three_prime_UTR 30.0%
AAGTTTCAAGAAATTGATGG+TGG + chr3_4:58035276-58035295 Msa0509590:three_prime_UTR 30.0%
TTGTTGTGAAGAGTTTGAAG+AGG - chr3_4:58032992-58033011 None:intergenic 35.0%
! AGTTGGTTGAAACGGATTTA+CGG - chr3_4:58033253-58033272 None:intergenic 35.0%
!! TCCATTGCTGATTCCATTTA+CGG + chr3_4:58033302-58033321 Msa0509590:CDS 35.0%
TAGAGAAGCTAACTCTGTAA+CGG + chr3_4:58033349-58033368 Msa0509590:CDS 35.0%
TGACCAACATCAAGAACATT+CGG - chr3_4:58033377-58033396 None:intergenic 35.0%
CCAAAATCAGCAGAATCTTT+CGG - chr3_4:58033575-58033594 None:intergenic 35.0%
TCAGTTTGACACGTTAACAA+TGG - chr3_4:58033850-58033869 None:intergenic 35.0%
AAGAACAGCAATCTTATGCT+TGG + chr3_4:58033982-58034001 Msa0509590:CDS 35.0%
AAAGCCATAGTCTTTAACAG+CGG + chr3_4:58034581-58034600 Msa0509590:intron 35.0%
GGTGCAAATAATGATTCTCT+CGG - chr3_4:58034815-58034834 None:intergenic 35.0%
GAGAGAATCATTATTTGCAC+CGG + chr3_4:58034814-58034833 Msa0509590:CDS 35.0%
CCAGAAGAAATTCCACTAAT+AGG - chr3_4:58034932-58034951 None:intergenic 35.0%
CCTATTAGTGGAATTTCTTC+TGG + chr3_4:58034929-58034948 Msa0509590:CDS 35.0%
TGGAAGATTACAATGCTACA+GGG - chr3_4:58035036-58035055 None:intergenic 35.0%
TTGGAAGATTACAATGCTAC+AGG - chr3_4:58035037-58035056 None:intergenic 35.0%
! GTAATCTTCCAATTTTGTGG+TGG + chr3_4:58035045-58035064 Msa0509590:exon 35.0%
TCTGGAAAACTATGGGATTT+CGG + chr3_4:58035149-58035168 Msa0509590:three_prime_UTR 35.0%
!! ACGCTTAGCCTTTTATTACT+TGG + chr3_4:58035182-58035201 Msa0509590:three_prime_UTR 35.0%
TTGTTGTGAAGAGTTTGAAG+AGG - chr3_4:58032992-58033011 None:intergenic 35.0%
! AGTTGGTTGAAACGGATTTA+CGG - chr3_4:58033253-58033272 None:intergenic 35.0%
!! TCCATTGCTGATTCCATTTA+CGG + chr3_4:58033302-58033321 Msa0509590:CDS 35.0%
TAGAGAAGCTAACTCTGTAA+CGG + chr3_4:58033349-58033368 Msa0509590:CDS 35.0%
TGACCAACATCAAGAACATT+CGG - chr3_4:58033377-58033396 None:intergenic 35.0%
CCAAAATCAGCAGAATCTTT+CGG - chr3_4:58033575-58033594 None:intergenic 35.0%
TCAGTTTGACACGTTAACAA+TGG - chr3_4:58033850-58033869 None:intergenic 35.0%
AAGAACAGCAATCTTATGCT+TGG + chr3_4:58033982-58034001 Msa0509590:CDS 35.0%
AAAGCCATAGTCTTTAACAG+CGG + chr3_4:58034581-58034600 Msa0509590:intron 35.0%
GGTGCAAATAATGATTCTCT+CGG - chr3_4:58034815-58034834 None:intergenic 35.0%
GAGAGAATCATTATTTGCAC+CGG + chr3_4:58034814-58034833 Msa0509590:CDS 35.0%
CCAGAAGAAATTCCACTAAT+AGG - chr3_4:58034932-58034951 None:intergenic 35.0%
CCTATTAGTGGAATTTCTTC+TGG + chr3_4:58034929-58034948 Msa0509590:CDS 35.0%
TGGAAGATTACAATGCTACA+GGG - chr3_4:58035036-58035055 None:intergenic 35.0%
TTGGAAGATTACAATGCTAC+AGG - chr3_4:58035037-58035056 None:intergenic 35.0%
! GTAATCTTCCAATTTTGTGG+TGG + chr3_4:58035045-58035064 Msa0509590:exon 35.0%
TCTGGAAAACTATGGGATTT+CGG + chr3_4:58035149-58035168 Msa0509590:three_prime_UTR 35.0%
!! ACGCTTAGCCTTTTATTACT+TGG + chr3_4:58035182-58035201 Msa0509590:three_prime_UTR 35.0%
! CTGTGTAAAGGGTATAACCT+AGG - chr3_4:58033070-58033089 None:intergenic 40.0%
!! GACTTTGAGGTCTGTGTAAA+GGG - chr3_4:58033081-58033100 None:intergenic 40.0%
!! AGACTTTGAGGTCTGTGTAA+AGG - chr3_4:58033082-58033101 None:intergenic 40.0%
AGAGATGTCTATGGAGTTTG+CGG - chr3_4:58033150-58033169 None:intergenic 40.0%
!! AGCATTGGATTGGGATTTTG+AGG - chr3_4:58033214-58033233 None:intergenic 40.0%
!! CTACACAAGAGCATTGGATT+GGG - chr3_4:58033223-58033242 None:intergenic 40.0%
!! TCTACACAAGAGCATTGGAT+TGG - chr3_4:58033224-58033243 None:intergenic 40.0%
ATCCAATGCTCTTGTGTAGA+TGG + chr3_4:58033224-58033243 Msa0509590:CDS 40.0%
! TTCCATCTACACAAGAGCAT+TGG - chr3_4:58033229-58033248 None:intergenic 40.0%
!! AGAAGGACGGATTTTGTAGT+TGG - chr3_4:58033270-58033289 None:intergenic 40.0%
! ATGAAAGTGTGTCAGAAGGA+CGG - chr3_4:58033283-58033302 None:intergenic 40.0%
! ATGGATGAAAGTGTGTCAGA+AGG - chr3_4:58033287-58033306 None:intergenic 40.0%
ACCGTAAATGGAATCAGCAA+TGG - chr3_4:58033306-58033325 None:intergenic 40.0%
!! ATTGCTGATTCCATTTACGG+TGG + chr3_4:58033305-58033324 Msa0509590:CDS 40.0%
TGATTCCATTTACGGTGGTT+TGG + chr3_4:58033310-58033329 Msa0509590:CDS 40.0%
AGAAACCAAACCACCGTAAA+TGG - chr3_4:58033318-58033337 None:intergenic 40.0%
GATCCGAATGTTCTTGATGT+TGG + chr3_4:58033371-58033390 Msa0509590:CDS 40.0%
TACAAGGAAGAGGAACAACA+AGG - chr3_4:58033403-58033422 None:intergenic 40.0%
TTTCGGAAACTTTGATGCAC+AGG - chr3_4:58033558-58033577 None:intergenic 40.0%
!!! CCGAAAGATTCTGCTGATTT+TGG + chr3_4:58033572-58033591 Msa0509590:CDS 40.0%
TTTGGATTGCTTGTCCCTAA+TGG + chr3_4:58033590-58033609 Msa0509590:CDS 40.0%
GGAAGTTATGCTATTACAGC+AGG + chr3_4:58033611-58033630 Msa0509590:CDS 40.0%
ACAATGGAGCAAAAATTCCC+TGG - chr3_4:58033834-58033853 None:intergenic 40.0%
!! GAACATGGGTTGATTCTGAA+TGG + chr3_4:58034448-58034467 Msa0509590:intron 40.0%
GTTTCCGCTGTTAAAGACTA+TGG - chr3_4:58034588-58034607 None:intergenic 40.0%
!! TCTAACAGTGATGATGGTGA+CGG - chr3_4:58034842-58034861 None:intergenic 40.0%
TCACCATCATCACTGTTAGA+CGG + chr3_4:58034842-58034861 Msa0509590:CDS 40.0%
ACAGGATTTACTCCTGCATT+AGG + chr3_4:58034905-58034924 Msa0509590:CDS 40.0%
ACAAGTGTGAGTGTCAAAGT+GGG - chr3_4:58034989-58035008 None:intergenic 40.0%
CTGGAAAACTATGGGATTTC+GGG + chr3_4:58035150-58035169 Msa0509590:three_prime_UTR 40.0%
! CATCTAGGGTCAGTAATTCA+AGG + chr3_4:58035227-58035246 Msa0509590:three_prime_UTR 40.0%
!! AGGGAATTAGAGGGTTGATA+TGG - chr3_4:58035334-58035353 None:intergenic 40.0%
TATCAACCCTCTAATTCCCT+TGG + chr3_4:58035334-58035353 Msa0509590:three_prime_UTR 40.0%
GGATTACCAAGGGAATTAGA+GGG - chr3_4:58035343-58035362 None:intergenic 40.0%
TGGATTACCAAGGGAATTAG+AGG - chr3_4:58035344-58035363 None:intergenic 40.0%
! CTGTGTAAAGGGTATAACCT+AGG - chr3_4:58033070-58033089 None:intergenic 40.0%
!! GACTTTGAGGTCTGTGTAAA+GGG - chr3_4:58033081-58033100 None:intergenic 40.0%
!! AGACTTTGAGGTCTGTGTAA+AGG - chr3_4:58033082-58033101 None:intergenic 40.0%
AGAGATGTCTATGGAGTTTG+CGG - chr3_4:58033150-58033169 None:intergenic 40.0%
!! AGCATTGGATTGGGATTTTG+AGG - chr3_4:58033214-58033233 None:intergenic 40.0%
!! CTACACAAGAGCATTGGATT+GGG - chr3_4:58033223-58033242 None:intergenic 40.0%
!! TCTACACAAGAGCATTGGAT+TGG - chr3_4:58033224-58033243 None:intergenic 40.0%
ATCCAATGCTCTTGTGTAGA+TGG + chr3_4:58033224-58033243 Msa0509590:CDS 40.0%
! TTCCATCTACACAAGAGCAT+TGG - chr3_4:58033229-58033248 None:intergenic 40.0%
!! AGAAGGACGGATTTTGTAGT+TGG - chr3_4:58033270-58033289 None:intergenic 40.0%
! ATGAAAGTGTGTCAGAAGGA+CGG - chr3_4:58033283-58033302 None:intergenic 40.0%
! ATGGATGAAAGTGTGTCAGA+AGG - chr3_4:58033287-58033306 None:intergenic 40.0%
ACCGTAAATGGAATCAGCAA+TGG - chr3_4:58033306-58033325 None:intergenic 40.0%
!! ATTGCTGATTCCATTTACGG+TGG + chr3_4:58033305-58033324 Msa0509590:CDS 40.0%
TGATTCCATTTACGGTGGTT+TGG + chr3_4:58033310-58033329 Msa0509590:CDS 40.0%
AGAAACCAAACCACCGTAAA+TGG - chr3_4:58033318-58033337 None:intergenic 40.0%
GATCCGAATGTTCTTGATGT+TGG + chr3_4:58033371-58033390 Msa0509590:CDS 40.0%
TACAAGGAAGAGGAACAACA+AGG - chr3_4:58033403-58033422 None:intergenic 40.0%
TTTCGGAAACTTTGATGCAC+AGG - chr3_4:58033558-58033577 None:intergenic 40.0%
!!! CCGAAAGATTCTGCTGATTT+TGG + chr3_4:58033572-58033591 Msa0509590:CDS 40.0%
TTTGGATTGCTTGTCCCTAA+TGG + chr3_4:58033590-58033609 Msa0509590:CDS 40.0%
GGAAGTTATGCTATTACAGC+AGG + chr3_4:58033611-58033630 Msa0509590:CDS 40.0%
ACAATGGAGCAAAAATTCCC+TGG - chr3_4:58033834-58033853 None:intergenic 40.0%
!! GAACATGGGTTGATTCTGAA+TGG + chr3_4:58034448-58034467 Msa0509590:intron 40.0%
GTTTCCGCTGTTAAAGACTA+TGG - chr3_4:58034588-58034607 None:intergenic 40.0%
!! TCTAACAGTGATGATGGTGA+CGG - chr3_4:58034842-58034861 None:intergenic 40.0%
TCACCATCATCACTGTTAGA+CGG + chr3_4:58034842-58034861 Msa0509590:CDS 40.0%
ACAGGATTTACTCCTGCATT+AGG + chr3_4:58034905-58034924 Msa0509590:CDS 40.0%
ACAAGTGTGAGTGTCAAAGT+GGG - chr3_4:58034989-58035008 None:intergenic 40.0%
CTGGAAAACTATGGGATTTC+GGG + chr3_4:58035150-58035169 Msa0509590:three_prime_UTR 40.0%
! CATCTAGGGTCAGTAATTCA+AGG + chr3_4:58035227-58035246 Msa0509590:three_prime_UTR 40.0%
!! AGGGAATTAGAGGGTTGATA+TGG - chr3_4:58035334-58035353 None:intergenic 40.0%
TATCAACCCTCTAATTCCCT+TGG + chr3_4:58035334-58035353 Msa0509590:three_prime_UTR 40.0%
GGATTACCAAGGGAATTAGA+GGG - chr3_4:58035343-58035362 None:intergenic 40.0%
TGGATTACCAAGGGAATTAG+AGG - chr3_4:58035344-58035363 None:intergenic 40.0%
TAGGAGAGAGTTGCATGTGT+CGG - chr3_4:58033051-58033070 None:intergenic 45.0%
AAGAGAGTTCGGAGACTTTG+AGG - chr3_4:58033094-58033113 None:intergenic 45.0%
TTGGAAGAGGGAAGAGAGTT+CGG - chr3_4:58033105-58033124 None:intergenic 45.0%
!! GATTGGGTCGATTTGGAAGA+GGG - chr3_4:58033117-58033136 None:intergenic 45.0%
!! AGATTGGGTCGATTTGGAAG+AGG - chr3_4:58033118-58033137 None:intergenic 45.0%
GTCAGGGTAAGAGATGTCTA+TGG - chr3_4:58033159-58033178 None:intergenic 45.0%
!!! AGAGTTTTGAAGGGAGGATG+TGG - chr3_4:58033190-58033209 None:intergenic 45.0%
!!! TGAGGTAGAGTTTTGAAGGG+AGG - chr3_4:58033196-58033215 None:intergenic 45.0%
CTGCAGTTTGTACTGTATGC+CGG + chr3_4:58033924-58033943 Msa0509590:intron 45.0%
CAAGAAACAGCTAGAGAAGC+CGG - chr3_4:58033946-58033965 None:intergenic 45.0%
GTGACTTCTTGCACTTACGA+TGG + chr3_4:58034042-58034061 Msa0509590:CDS 45.0%
CTCATTGCAACAAGTCACAG+AGG - chr3_4:58034105-58034124 None:intergenic 45.0%
! TAATTTTCTTGCCTCCCTGC+AGG + chr3_4:58034181-58034200 Msa0509590:intron 45.0%
CAATTGACCCAGTTCGCATT+AGG + chr3_4:58034376-58034395 Msa0509590:intron 45.0%
GATTCTCTCGGAACAACTGT+AGG - chr3_4:58034803-58034822 None:intergenic 45.0%
!! TAACAGTGATGATGGTGACG+GGG - chr3_4:58034840-58034859 None:intergenic 45.0%
!! CTAACAGTGATGATGGTGAC+GGG - chr3_4:58034841-58034860 None:intergenic 45.0%
GTTCCGTCTAACAGTGATGA+TGG - chr3_4:58034848-58034867 None:intergenic 45.0%
TCACTGTTAGACGGAACTGA+TGG + chr3_4:58034851-58034870 Msa0509590:CDS 45.0%
CACTGTTAGACGGAACTGAT+GGG + chr3_4:58034852-58034871 Msa0509590:CDS 45.0%
GCAGGAGTAAATCCTGTTGA+AGG - chr3_4:58034902-58034921 None:intergenic 45.0%
! AGTGGGTAATGGTTTCACCA+AGG - chr3_4:58034972-58034991 None:intergenic 45.0%
GTGAGTGTCAAAGTGGGTAA+TGG - chr3_4:58034983-58035002 None:intergenic 45.0%
CACAAGTGTGAGTGTCAAAG+TGG - chr3_4:58034990-58035009 None:intergenic 45.0%
GCTGAACTCTGGATTACCAA+GGG - chr3_4:58035353-58035372 None:intergenic 45.0%
AGCTGAACTCTGGATTACCA+AGG - chr3_4:58035354-58035373 None:intergenic 45.0%
TAGGAGAGAGTTGCATGTGT+CGG - chr3_4:58033051-58033070 None:intergenic 45.0%
AAGAGAGTTCGGAGACTTTG+AGG - chr3_4:58033094-58033113 None:intergenic 45.0%
TTGGAAGAGGGAAGAGAGTT+CGG - chr3_4:58033105-58033124 None:intergenic 45.0%
!! GATTGGGTCGATTTGGAAGA+GGG - chr3_4:58033117-58033136 None:intergenic 45.0%
!! AGATTGGGTCGATTTGGAAG+AGG - chr3_4:58033118-58033137 None:intergenic 45.0%
GTCAGGGTAAGAGATGTCTA+TGG - chr3_4:58033159-58033178 None:intergenic 45.0%
!!! AGAGTTTTGAAGGGAGGATG+TGG - chr3_4:58033190-58033209 None:intergenic 45.0%
!!! TGAGGTAGAGTTTTGAAGGG+AGG - chr3_4:58033196-58033215 None:intergenic 45.0%
CTGCAGTTTGTACTGTATGC+CGG + chr3_4:58033924-58033943 Msa0509590:intron 45.0%
CAAGAAACAGCTAGAGAAGC+CGG - chr3_4:58033946-58033965 None:intergenic 45.0%
GTGACTTCTTGCACTTACGA+TGG + chr3_4:58034042-58034061 Msa0509590:CDS 45.0%
CTCATTGCAACAAGTCACAG+AGG - chr3_4:58034105-58034124 None:intergenic 45.0%
! TAATTTTCTTGCCTCCCTGC+AGG + chr3_4:58034181-58034200 Msa0509590:intron 45.0%
CAATTGACCCAGTTCGCATT+AGG + chr3_4:58034376-58034395 Msa0509590:intron 45.0%
GATTCTCTCGGAACAACTGT+AGG - chr3_4:58034803-58034822 None:intergenic 45.0%
!! TAACAGTGATGATGGTGACG+GGG - chr3_4:58034840-58034859 None:intergenic 45.0%
!! CTAACAGTGATGATGGTGAC+GGG - chr3_4:58034841-58034860 None:intergenic 45.0%
GTTCCGTCTAACAGTGATGA+TGG - chr3_4:58034848-58034867 None:intergenic 45.0%
TCACTGTTAGACGGAACTGA+TGG + chr3_4:58034851-58034870 Msa0509590:CDS 45.0%
CACTGTTAGACGGAACTGAT+GGG + chr3_4:58034852-58034871 Msa0509590:CDS 45.0%
GCAGGAGTAAATCCTGTTGA+AGG - chr3_4:58034902-58034921 None:intergenic 45.0%
! AGTGGGTAATGGTTTCACCA+AGG - chr3_4:58034972-58034991 None:intergenic 45.0%
GTGAGTGTCAAAGTGGGTAA+TGG - chr3_4:58034983-58035002 None:intergenic 45.0%
CACAAGTGTGAGTGTCAAAG+TGG - chr3_4:58034990-58035009 None:intergenic 45.0%
GCTGAACTCTGGATTACCAA+GGG - chr3_4:58035353-58035372 None:intergenic 45.0%
AGCTGAACTCTGGATTACCA+AGG - chr3_4:58035354-58035373 None:intergenic 45.0%
GACACATGCAACTCTCTCCT+AGG + chr3_4:58033050-58033069 Msa0509590:CDS 50.0%
GGAGTGAGATTGGGTCGATT+TGG - chr3_4:58033124-58033143 None:intergenic 50.0%
TTGCGGTGAGGAGTGAGATT+GGG - chr3_4:58033133-58033152 None:intergenic 50.0%
TTTGCGGTGAGGAGTGAGAT+TGG - chr3_4:58033134-58033153 None:intergenic 50.0%
TGTCTATGGAGTTTGCGGTG+AGG - chr3_4:58033145-58033164 None:intergenic 50.0%
GGATGTGGTGTTCAACGTCA+GGG - chr3_4:58033175-58033194 None:intergenic 50.0%
AGGATGTGGTGTTCAACGTC+AGG - chr3_4:58033176-58033195 None:intergenic 50.0%
GTTACCGTGCAACAGACTAG+CGG + chr3_4:58034009-58034028 Msa0509590:CDS 50.0%
TTGACCCAGTTCGCATTAGG+TGG + chr3_4:58034379-58034398 Msa0509590:intron 50.0%
TTGGCCACCTAATGCGAACT+GGG - chr3_4:58034386-58034405 None:intergenic 50.0%
TTTGGCCACCTAATGCGAAC+TGG - chr3_4:58034387-58034406 None:intergenic 50.0%
ACAGCGGAAACTAGAGTGAC+TGG + chr3_4:58034597-58034616 Msa0509590:intron 50.0%
CAGCGGAAACTAGAGTGACT+GGG + chr3_4:58034598-58034617 Msa0509590:intron 50.0%
AAATGATTCTGCAGGGTCGC+AGG + chr3_4:58034754-58034773 Msa0509590:intron 50.0%
TAGGTGGGGCAATAAGAGGA+GGG - chr3_4:58034784-58034803 None:intergenic 50.0%
ACTGTAGGTGGGGCAATAAG+AGG - chr3_4:58034788-58034807 None:intergenic 50.0%
TCTCGGAACAACTGTAGGTG+GGG - chr3_4:58034798-58034817 None:intergenic 50.0%
CTCTCGGAACAACTGTAGGT+GGG - chr3_4:58034799-58034818 None:intergenic 50.0%
TCTCTCGGAACAACTGTAGG+TGG - chr3_4:58034800-58034819 None:intergenic 50.0%
GAGATCACCCAAATCCTCTG+TGG + chr3_4:58034874-58034893 Msa0509590:CDS 50.0%
!! GAAGGCACCACAGAGGATTT+GGG - chr3_4:58034884-58034903 None:intergenic 50.0%
!! TGAAGGCACCACAGAGGATT+TGG - chr3_4:58034885-58034904 None:intergenic 50.0%
CCACTAATAGGGCCTAATGC+AGG - chr3_4:58034920-58034939 None:intergenic 50.0%
CCTGCATTAGGCCCTATTAG+TGG + chr3_4:58034917-58034936 Msa0509590:CDS 50.0%
! TGGTTTCACCAAGGAGCATG+CGG - chr3_4:58034963-58034982 None:intergenic 50.0%
!! ACAATAGATAGGAGCACCCG+TGG - chr3_4:58035088-58035107 None:intergenic 50.0%
GACACATGCAACTCTCTCCT+AGG + chr3_4:58033050-58033069 Msa0509590:CDS 50.0%
GGAGTGAGATTGGGTCGATT+TGG - chr3_4:58033124-58033143 None:intergenic 50.0%
TTGCGGTGAGGAGTGAGATT+GGG - chr3_4:58033133-58033152 None:intergenic 50.0%
TTTGCGGTGAGGAGTGAGAT+TGG - chr3_4:58033134-58033153 None:intergenic 50.0%
TGTCTATGGAGTTTGCGGTG+AGG - chr3_4:58033145-58033164 None:intergenic 50.0%
GGATGTGGTGTTCAACGTCA+GGG - chr3_4:58033175-58033194 None:intergenic 50.0%
AGGATGTGGTGTTCAACGTC+AGG - chr3_4:58033176-58033195 None:intergenic 50.0%
GTTACCGTGCAACAGACTAG+CGG + chr3_4:58034009-58034028 Msa0509590:CDS 50.0%
TTGACCCAGTTCGCATTAGG+TGG + chr3_4:58034379-58034398 Msa0509590:intron 50.0%
TTGGCCACCTAATGCGAACT+GGG - chr3_4:58034386-58034405 None:intergenic 50.0%
TTTGGCCACCTAATGCGAAC+TGG - chr3_4:58034387-58034406 None:intergenic 50.0%
ACAGCGGAAACTAGAGTGAC+TGG + chr3_4:58034597-58034616 Msa0509590:intron 50.0%
CAGCGGAAACTAGAGTGACT+GGG + chr3_4:58034598-58034617 Msa0509590:intron 50.0%
AAATGATTCTGCAGGGTCGC+AGG + chr3_4:58034754-58034773 Msa0509590:intron 50.0%
TAGGTGGGGCAATAAGAGGA+GGG - chr3_4:58034784-58034803 None:intergenic 50.0%
ACTGTAGGTGGGGCAATAAG+AGG - chr3_4:58034788-58034807 None:intergenic 50.0%
TCTCGGAACAACTGTAGGTG+GGG - chr3_4:58034798-58034817 None:intergenic 50.0%
CTCTCGGAACAACTGTAGGT+GGG - chr3_4:58034799-58034818 None:intergenic 50.0%
TCTCTCGGAACAACTGTAGG+TGG - chr3_4:58034800-58034819 None:intergenic 50.0%
GAGATCACCCAAATCCTCTG+TGG + chr3_4:58034874-58034893 Msa0509590:CDS 50.0%
!! GAAGGCACCACAGAGGATTT+GGG - chr3_4:58034884-58034903 None:intergenic 50.0%
!! TGAAGGCACCACAGAGGATT+TGG - chr3_4:58034885-58034904 None:intergenic 50.0%
CCACTAATAGGGCCTAATGC+AGG - chr3_4:58034920-58034939 None:intergenic 50.0%
CCTGCATTAGGCCCTATTAG+TGG + chr3_4:58034917-58034936 Msa0509590:CDS 50.0%
! TGGTTTCACCAAGGAGCATG+CGG - chr3_4:58034963-58034982 None:intergenic 50.0%
!! ACAATAGATAGGAGCACCCG+TGG - chr3_4:58035088-58035107 None:intergenic 50.0%
CATGTGTCGGAGGTTGTGCA+TGG - chr3_4:58033038-58033057 None:intergenic 55.0%
GAGAGAGTTGCATGTGTCGG+AGG - chr3_4:58033048-58033067 None:intergenic 55.0%
CACTGTGTGCAGTGTAGCTG+TGG + chr3_4:58033635-58033654 Msa0509590:CDS 55.0%
! ACCACCGCTAGTCTGTTGCA+CGG - chr3_4:58034016-58034035 None:intergenic 55.0%
ACATCGAGGCTGAAGGGATG+GGG - chr3_4:58034211-58034230 None:intergenic 55.0%
GACATCGAGGCTGAAGGGAT+GGG - chr3_4:58034212-58034231 None:intergenic 55.0%
ACCTGGACATCGAGGCTGAA+GGG - chr3_4:58034217-58034236 None:intergenic 55.0%
GTAGGTGGGGCAATAAGAGG+AGG - chr3_4:58034785-58034804 None:intergenic 55.0%
TCCTCTGTGGTGCCTTCAAC+AGG + chr3_4:58034887-58034906 Msa0509590:CDS 55.0%
!! TCCTGTTGAAGGCACCACAG+AGG - chr3_4:58034891-58034910 None:intergenic 55.0%
CATGTGTCGGAGGTTGTGCA+TGG - chr3_4:58033038-58033057 None:intergenic 55.0%
GAGAGAGTTGCATGTGTCGG+AGG - chr3_4:58033048-58033067 None:intergenic 55.0%
CACTGTGTGCAGTGTAGCTG+TGG + chr3_4:58033635-58033654 Msa0509590:CDS 55.0%
! ACCACCGCTAGTCTGTTGCA+CGG - chr3_4:58034016-58034035 None:intergenic 55.0%
ACATCGAGGCTGAAGGGATG+GGG - chr3_4:58034211-58034230 None:intergenic 55.0%
GACATCGAGGCTGAAGGGAT+GGG - chr3_4:58034212-58034231 None:intergenic 55.0%
ACCTGGACATCGAGGCTGAA+GGG - chr3_4:58034217-58034236 None:intergenic 55.0%
GTAGGTGGGGCAATAAGAGG+AGG - chr3_4:58034785-58034804 None:intergenic 55.0%
TCCTCTGTGGTGCCTTCAAC+AGG + chr3_4:58034887-58034906 Msa0509590:CDS 55.0%
!! TCCTGTTGAAGGCACCACAG+AGG - chr3_4:58034891-58034910 None:intergenic 55.0%
ACCGTGCAACAGACTAGCGG+TGG + chr3_4:58034012-58034031 Msa0509590:CDS 60.0%
AGGGATGGGGTCAACCTGCA+GGG - chr3_4:58034198-58034217 None:intergenic 60.0%
AAGGGATGGGGTCAACCTGC+AGG - chr3_4:58034199-58034218 None:intergenic 60.0%
GGACATCGAGGCTGAAGGGA+TGG - chr3_4:58034213-58034232 None:intergenic 60.0%
TCCCTTCAGCCTCGATGTCC+AGG + chr3_4:58034213-58034232 Msa0509590:CDS 60.0%
GACCTGGACATCGAGGCTGA+AGG - chr3_4:58034218-58034237 None:intergenic 60.0%
! AAGGTTGCAGCGCACTGACC+TGG - chr3_4:58034234-58034253 None:intergenic 60.0%
!! AGTGATGATGGTGACGGGGC+CGG - chr3_4:58034836-58034855 None:intergenic 60.0%
TGCTTCTGCCGCATGCTCCT+TGG + chr3_4:58034952-58034971 Msa0509590:CDS 60.0%
ACCGTGCAACAGACTAGCGG+TGG + chr3_4:58034012-58034031 Msa0509590:CDS 60.0%
AGGGATGGGGTCAACCTGCA+GGG - chr3_4:58034198-58034217 None:intergenic 60.0%
AAGGGATGGGGTCAACCTGC+AGG - chr3_4:58034199-58034218 None:intergenic 60.0%
GGACATCGAGGCTGAAGGGA+TGG - chr3_4:58034213-58034232 None:intergenic 60.0%
TCCCTTCAGCCTCGATGTCC+AGG + chr3_4:58034213-58034232 Msa0509590:CDS 60.0%
GACCTGGACATCGAGGCTGA+AGG - chr3_4:58034218-58034237 None:intergenic 60.0%
! AAGGTTGCAGCGCACTGACC+TGG - chr3_4:58034234-58034253 None:intergenic 60.0%
!! AGTGATGATGGTGACGGGGC+CGG - chr3_4:58034836-58034855 None:intergenic 60.0%
TGCTTCTGCCGCATGCTCCT+TGG + chr3_4:58034952-58034971 Msa0509590:CDS 60.0%
GATGGGGTCAACCTGCAGGG+AGG - chr3_4:58034195-58034214 None:intergenic 65.0%
! GCGCACTGACCTGGACATCG+AGG - chr3_4:58034225-58034244 None:intergenic 65.0%
GATGGGGTCAACCTGCAGGG+AGG - chr3_4:58034195-58034214 None:intergenic 65.0%
! GCGCACTGACCTGGACATCG+AGG - chr3_4:58034225-58034244 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 58032951 58035382 58032951 ID=Msa0509590;Name=Msa0509590
chr3_4 mRNA 58032951 58035382 58032951 ID=Msa0509590-mRNA-1;Parent=Msa0509590;Name=Msa0509590-mRNA-1;_AED=0.09;_eAED=0.10;_QI=0|0.75|0.6|1|1|1|5|334|353
chr3_4 exon 58032951 58033419 58032951 ID=Msa0509590-mRNA-1:exon:13380;Parent=Msa0509590-mRNA-1
chr3_4 exon 58033555 58033672 58033555 ID=Msa0509590-mRNA-1:exon:13381;Parent=Msa0509590-mRNA-1
chr3_4 exon 58033930 58034091 58033930 ID=Msa0509590-mRNA-1:exon:13382;Parent=Msa0509590-mRNA-1
chr3_4 exon 58034203 58034234 58034203 ID=Msa0509590-mRNA-1:exon:13383;Parent=Msa0509590-mRNA-1
chr3_4 exon 58034768 58035382 58034768 ID=Msa0509590-mRNA-1:exon:13384;Parent=Msa0509590-mRNA-1
chr3_4 CDS 58032951 58033419 58032951 ID=Msa0509590-mRNA-1:cds;Parent=Msa0509590-mRNA-1
chr3_4 CDS 58033555 58033672 58033555 ID=Msa0509590-mRNA-1:cds;Parent=Msa0509590-mRNA-1
chr3_4 CDS 58033930 58034091 58033930 ID=Msa0509590-mRNA-1:cds;Parent=Msa0509590-mRNA-1
chr3_4 CDS 58034203 58034234 58034203 ID=Msa0509590-mRNA-1:cds;Parent=Msa0509590-mRNA-1
chr3_4 CDS 58034768 58035048 58034768 ID=Msa0509590-mRNA-1:cds;Parent=Msa0509590-mRNA-1
chr3_4 three_prime_UTR 58035049 58035382 58035049 ID=Msa0509590-mRNA-1:three_prime_utr;Parent=Msa0509590-mRNA-1
Gene Sequence

>Msa0509590

ATGCAGAACAAAAACATTCTATTATTCTTGTTCTTGTTCCTCTTCAAACTCTTCACAACAACAACCTCAAAATCAACAATAGAACCATGCACAACCTCCGACACATGCAACTCTCTCCTAGGTTATACCCTTTACACAGACCTCAAAGTCTCCGAACTCTCTTCCCTCTTCCAAATCGACCCAATCTCACTCCTCACCGCAAACTCCATAGACATCTCTTACCCTGACGTTGAACACCACATCCTCCCTTCAAAACTCTACCTCAAAATCCCAATCCAATGCTCTTGTGTAGATGGAATCCGTAAATCCGTTTCAACCAACTACAAAATCCGTCCTTCTGACACACTTTCATCCATTGCTGATTCCATTTACGGTGGTTTGGTTTCTTCTGATCAGCTTAGAGAAGCTAACTCTGTAACGGATCCGAATGTTCTTGATGTTGGTCAGAACCTTGTTGTTCCTCTTCCTTCCTGTGCATCAAAGTTTCCGAAAGATTCTGCTGATTTTGGATTGCTTGTCCCTAATGGAAGTTATGCTATTACAGCAGGACACTGTGTGCAGTGTAGCTGTGGACCCCGAAACTTAAATTTGTACTGTATGCCGGCTTCTCTAGCTGTTTCTTGCTCAAGCATGCAATGCAAGAACAGCAATCTTATGCTTGGTAATGTTACCGTGCAACAGACTAGCGGTGGTTGCAATGTGACTTCTTGCACTTACGATGGTATTGTTAATGGTACCATAGCAACAACGTTGACCCCATCCCTTCAGCCTCGATGTCCAGGGTCGCAGGAATTCCCTCCTCTTATTGCCCCACCTACAGTTGTTCCGAGAGAATCATTATTTGCACCGGCCCCGTCACCATCATCACTGTTAGACGGAACTGATGGGAGATCACCCAAATCCTCTGTGGTGCCTTCAACAGGATTTACTCCTGCATTAGGCCCTATTAGTGGAATTTCTTCTGGTGCTTCTGCCGCATGCTCCTTGGTGAAACCATTACCCACTTTGACACTCACACTTGTGTTATTATTTGTCAAGTTGATGATCCCTGTAGCATTGTAA
Protein sequence

>Msa0509590

MQNKNILLFLFLFLFKLFTTTTSKSTIEPCTTSDTCNSLLGYTLYTDLKVSELSSLFQIDPISLLTANSIDISYPDVEHHILPSKLYLKIPIQCSCVDGIRKSVSTNYKIRPSDTLSSIADSIYGGLVSSDQLREANSVTDPNVLDVGQNLVVPLPSCASKFPKDSADFGLLVPNGSYAITAGHCVQCSCGPRNLNLYCMPASLAVSCSSMQCKNSNLMLGNVTVQQTSGGCNVTSCTYDGIVNGTIATTLTPSLQPRCPGSQEFPPLIAPPTVVPRESLFAPAPSPSSLLDGTDGRSPKSSVVPSTGFTPALGPISGISSGASAACSLVKPLPTLTLTLVLLFVKLMIPVAL*