Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511360 | XP_003601268.2 | 90.000 | 150 | 1 | 1 | 1 | 136 | 1708 | 1857 | 3.07e-78 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511360 | sp|Q9M3G7|ATM_ARATH | 50.360 | 139 | 55 | 1 | 1 | 125 | 2538 | 2676 | 5.80e-40 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511360 | G7J5G3 | 90.000 | 150 | 1 | 1 | 1 | 136 | 1708 | 1857 | 1.47e-78 | 263 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0465410 | Msa0511360 | 0.809038 | 2.305645e-50 | -8.615850e-47 |
| Msa0511270 | Msa0511360 | 0.800063 | 1.718387e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511360 | MtrunA17_Chr3g0117611 | 90.000 | 150 | 1 | 1 | 1 | 136 | 1708 | 1857 | 2.82e-82 | 263 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511360 | AT3G48190.3 | 50.360 | 139 | 55 | 1 | 1 | 125 | 1671 | 1809 | 8.22e-41 | 144 |
| Msa0511360 | AT3G48190.2 | 50.360 | 139 | 55 | 1 | 1 | 125 | 1695 | 1833 | 8.89e-41 | 144 |
| Msa0511360 | AT3G48190.1 | 50.360 | 139 | 55 | 1 | 1 | 125 | 1725 | 1863 | 1.00e-40 | 144 |
Find 22 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACAAATTAATTTCTTTGC+AGG | 0.265603 | 3_4:+60880566 | Msa0511360:CDS |
| CAAAAGAAGCTCGGCGAATT+CGG | 0.323827 | 3_4:-60880493 | None:intergenic |
| ACTTGTGGAAAATTTCCTTT+TGG | 0.328676 | 3_4:+60878529 | Msa0511360:CDS |
| TTGGACACTTCATGCATTGA+TGG | 0.344714 | 3_4:-60882289 | None:intergenic |
| AACAAACACGAAGTTCATTA+AGG | 0.366175 | 3_4:-60882240 | None:intergenic |
| AAGTTCGATATTAACGCCTT+TGG | 0.376531 | 3_4:-60878510 | None:intergenic |
| GTTGAACGAGCATATATTTG+TGG | 0.419398 | 3_4:+60882174 | Msa0511360:intron |
| TGAGACGTGGATTTGCCCTT+TGG | 0.441338 | 3_4:+60880272 | Msa0511360:CDS |
| TATTGCTGCGAGGAAGGATC+TGG | 0.454316 | 3_4:+60880533 | Msa0511360:CDS |
| CAATAAGAGAATACACCAAA+GGG | 0.507973 | 3_4:-60880287 | None:intergenic |
| AGGCGTTAATATCGAACTTG+TGG | 0.517864 | 3_4:+60878514 | Msa0511360:CDS |
| ACTTCCTATCCAGATCCAAA+AGG | 0.530340 | 3_4:-60878544 | None:intergenic |
| TGTCAATATTGCTGCGAGGA+AGG | 0.538152 | 3_4:+60880527 | Msa0511360:CDS |
| GATCTGGATAGGAAGTCAAA+AGG | 0.556480 | 3_4:+60878551 | Msa0511360:CDS |
| GCAATATTGACAAATATACT+TGG | 0.563415 | 3_4:-60880516 | None:intergenic |
| ACTTCGTGTTTGTTATGTCA+TGG | 0.583312 | 3_4:+60882249 | Msa0511360:CDS |
| ACTGCAACGATGTAGTACTA+AGG | 0.583657 | 3_4:+60880313 | Msa0511360:CDS |
| TATACTTGGCAAAAGAAGCT+CGG | 0.608807 | 3_4:-60880502 | None:intergenic |
| ACAATAAGAGAATACACCAA+AGG | 0.611186 | 3_4:-60880288 | None:intergenic |
| ATCAATGCATGAAGTGTCCA+AGG | 0.627558 | 3_4:+60882291 | Msa0511360:CDS |
| TTATTGTAGATACATTCCAA+AGG | 0.687470 | 3_4:+60878494 | None:intergenic |
| TATTTGTCAATATTGCTGCG+AGG | 0.724861 | 3_4:+60880523 | Msa0511360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTAATATTTTTATATT+AGG | + | chr3_4:60879869-60879888 | Msa0511360:intron | 0.0% |
| !!! | TTGTAATAGATTTTTATATT+TGG | + | chr3_4:60880066-60880085 | Msa0511360:intron | 10.0% |
| !!! | TAAAAATAGTTTTAAAAAAG+TGG | - | chr3_4:60880134-60880153 | None:intergenic | 10.0% |
| !!! | ATTATATAAATTTGATTTGA+CGG | + | chr3_4:60880687-60880706 | Msa0511360:intron | 10.0% |
| !! | AATATCATAAAAACAAAATA+GGG | - | chr3_4:60882334-60882353 | None:intergenic | 10.0% |
| !! | AAATATCATAAAAACAAAAT+AGG | - | chr3_4:60882335-60882354 | None:intergenic | 10.0% |
| !! | TTGTGCTAAATATTATATTA+AGG | - | chr3_4:60878741-60878760 | None:intergenic | 15.0% |
| !!! | TCTTATAATTTCTCTTTTAA+GGG | - | chr3_4:60878946-60878965 | None:intergenic | 15.0% |
| !! | ATTGAGAAAAAATAATTGAA+TGG | - | chr3_4:60879125-60879144 | None:intergenic | 15.0% |
| !!! | TTTTCTTCAATTTCTATTTA+GGG | + | chr3_4:60879154-60879173 | Msa0511360:intron | 15.0% |
| !!! | ATTTTTAGTAGATAATAAAG+TGG | - | chr3_4:60879432-60879451 | None:intergenic | 15.0% |
| !! | TCATCAATAATTATATTTAG+TGG | + | chr3_4:60879590-60879609 | Msa0511360:intron | 15.0% |
| !! | ATAGATGTAGAAATAAAATA+TGG | - | chr3_4:60881582-60881601 | None:intergenic | 15.0% |
| !!! | AATCTTTTTTTATGCAATAA+GGG | - | chr3_4:60881928-60881947 | None:intergenic | 15.0% |
| !!! | TAATCTTTTTTTATGCAATA+AGG | - | chr3_4:60881929-60881948 | None:intergenic | 15.0% |
| !! | TGTGAAACTTAATATGTTAT+CGG | + | chr3_4:60878603-60878622 | Msa0511360:intron | 20.0% |
| !! | TTATTTAAATAGACATGTGT+TGG | + | chr3_4:60878678-60878697 | Msa0511360:intron | 20.0% |
| !! | TATTTAAATAGACATGTGTT+GGG | + | chr3_4:60878679-60878698 | Msa0511360:intron | 20.0% |
| !! | GCTAAATATTATATTAAGGT+TGG | - | chr3_4:60878737-60878756 | None:intergenic | 20.0% |
| !! | ATAACTTAAGTAAAACTAAC+TGG | - | chr3_4:60878860-60878879 | None:intergenic | 20.0% |
| !!! | AGTTAGTTTTACTTAAGTTA+TGG | + | chr3_4:60878859-60878878 | Msa0511360:intron | 20.0% |
| !!! | CTCTTATAATTTCTCTTTTA+AGG | - | chr3_4:60878947-60878966 | None:intergenic | 20.0% |
| !! | CTATTAATTACTTCAATTCA+AGG | + | chr3_4:60878980-60878999 | Msa0511360:intron | 20.0% |
| !!! | CTTTTCTTCAATTTCTATTT+AGG | + | chr3_4:60879153-60879172 | Msa0511360:intron | 20.0% |
| !! | TTTCTTCAATTTCTATTTAG+GGG | + | chr3_4:60879155-60879174 | Msa0511360:intron | 20.0% |
| !!! | TTTTATTGTCTATAGATTTG+TGG | - | chr3_4:60879365-60879384 | None:intergenic | 20.0% |
| !! | GAAACAATTATCTATTACTT+TGG | + | chr3_4:60879389-60879408 | Msa0511360:intron | 20.0% |
| !! | CAATAATTATATTTAGTGGA+AGG | + | chr3_4:60879594-60879613 | Msa0511360:intron | 20.0% |
| !!! | TTCGCTTTAGATTTATAATT+TGG | - | chr3_4:60879633-60879652 | None:intergenic | 20.0% |
| !! | TTGCAAATTCATCAAAATTT+AGG | - | chr3_4:60879794-60879813 | None:intergenic | 20.0% |
| !! | AACATTTAATTAGTAACGTA+GGG | - | chr3_4:60880350-60880369 | None:intergenic | 20.0% |
| !! | GTGATTATTATTCAATGAAT+GGG | - | chr3_4:60881633-60881652 | None:intergenic | 20.0% |
| !! | TGTGATTATTATTCAATGAA+TGG | - | chr3_4:60881634-60881653 | None:intergenic | 20.0% |
| !! | AAGAGAATCAAATAAAATCA+TGG | + | chr3_4:60881740-60881759 | Msa0511360:intron | 20.0% |
| !! | TTGTTTATCTGAATGAAATA+AGG | - | chr3_4:60881956-60881975 | None:intergenic | 20.0% |
| !! | ATGTACATGTTAAAGTTATA+GGG | - | chr3_4:60882086-60882105 | None:intergenic | 20.0% |
| !! | AATGTACATGTTAAAGTTAT+AGG | - | chr3_4:60882087-60882106 | None:intergenic | 20.0% |
| !! | TCTCAAACTTATAAACAAAA+AGG | - | chr3_4:60882361-60882380 | None:intergenic | 20.0% |
| ! | GTGAAACTTAATATGTTATC+GGG | + | chr3_4:60878604-60878623 | Msa0511360:intron | 25.0% |
| !!! | TTTCTTGGATTGGTTAAAAT+AGG | + | chr3_4:60879063-60879082 | Msa0511360:intron | 25.0% |
| ! | TTCTTCAATTTCTATTTAGG+GGG | + | chr3_4:60879156-60879175 | Msa0511360:intron | 25.0% |
| ! | TTTAAAGACAAGATAGATCA+AGG | - | chr3_4:60879280-60879299 | None:intergenic | 25.0% |
| !! | ATCTTGTCTTTAAAGAATTG+TGG | + | chr3_4:60879286-60879305 | Msa0511360:intron | 25.0% |
| ! | ATAGTGAAATATATGAACAG+AGG | - | chr3_4:60879512-60879531 | None:intergenic | 25.0% |
| ! | GATAAGGCTTAAAAAACAAA+TGG | - | chr3_4:60879770-60879789 | None:intergenic | 25.0% |
| ! | TCATCAAAATTTAGGTGATA+AGG | - | chr3_4:60879786-60879805 | None:intergenic | 25.0% |
| ! | TTTCTGCAACTGAAAAATAA+AGG | - | chr3_4:60880206-60880225 | None:intergenic | 25.0% |
| !! | GTAGTACTAAGGTATTATTA+TGG | + | chr3_4:60880324-60880343 | Msa0511360:intron | 25.0% |
| ! | CAACATTTAATTAGTAACGT+AGG | - | chr3_4:60880351-60880370 | None:intergenic | 25.0% |
| ! | TATCATATCTTGACATAATC+TGG | - | chr3_4:60880463-60880482 | None:intergenic | 25.0% |
| ! | GCAATATTGACAAATATACT+TGG | - | chr3_4:60880519-60880538 | None:intergenic | 25.0% |
| ! | TCACAAATTAATTTCTTTGC+AGG | + | chr3_4:60880566-60880585 | Msa0511360:CDS | 25.0% |
| ! | TAGGAATAGAGATAATTGAA+TGG | + | chr3_4:60880866-60880885 | Msa0511360:intron | 25.0% |
| ! | TTCATATCAACGAAAACATA+AGG | + | chr3_4:60881073-60881092 | Msa0511360:intron | 25.0% |
| ! | TAGAATACCTTGAAATGATT+TGG | + | chr3_4:60881170-60881189 | Msa0511360:intron | 25.0% |
| !! | TCAACTTTAAGTTCAGTATA+AGG | - | chr3_4:60881378-60881397 | None:intergenic | 25.0% |
| !!! | CTTTGCAATTAGATTTTTTC+AGG | - | chr3_4:60881440-60881459 | None:intergenic | 25.0% |
| !! | TGTATTGATGTAGAAAGTAA+TGG | + | chr3_4:60881546-60881565 | Msa0511360:intron | 25.0% |
| ! | ATTCTAAACAGAAATTACAC+TGG | + | chr3_4:60881600-60881619 | Msa0511360:intron | 25.0% |
| ! | TACTAAGATATATGCCTTTA+GGG | - | chr3_4:60881886-60881905 | None:intergenic | 25.0% |
| !!! | ATCCAGTTTTAGTTTAAACA+AGG | + | chr3_4:60881975-60881994 | Msa0511360:intron | 25.0% |
| !!! | TCCAGTTTTAGTTTAAACAA+GGG | + | chr3_4:60881976-60881995 | Msa0511360:intron | 25.0% |
| ! | TGTACATGTTAAAGTTATAG+GGG | - | chr3_4:60882085-60882104 | None:intergenic | 25.0% |
| ! | ACTTGTGGAAAATTTCCTTT+TGG | + | chr3_4:60878529-60878548 | Msa0511360:CDS | 30.0% |
| ! | TAGGAAGTCAAAAGGTATAA+TGG | + | chr3_4:60878559-60878578 | Msa0511360:intron | 30.0% |
| GTCAAAATTCAGTGATTCTT+GGG | - | chr3_4:60878795-60878814 | None:intergenic | 30.0% | |
| !! | AATTTTGACGCTGTATCTTT+AGG | + | chr3_4:60878806-60878825 | Msa0511360:intron | 30.0% |
| TGATACTAGGTTTCATTTCT+TGG | + | chr3_4:60879048-60879067 | Msa0511360:intron | 30.0% | |
| !! | TTGGATTGGTTAAAATAGGT+TGG | + | chr3_4:60879067-60879086 | Msa0511360:intron | 30.0% |
| TGGAATTGATTGTAACAAGA+TGG | + | chr3_4:60879087-60879106 | Msa0511360:intron | 30.0% | |
| AATTTCTATTTAGGGGGTTT+AGG | + | chr3_4:60879162-60879181 | Msa0511360:intron | 30.0% | |
| ACAGAAATTGTGATTGTTGT+TGG | - | chr3_4:60879321-60879340 | None:intergenic | 30.0% | |
| TAAAGTGGAACCTAATAAAG+CGG | - | chr3_4:60879417-60879436 | None:intergenic | 30.0% | |
| AAGAATTTCTGAACTGTTAC+AGG | + | chr3_4:60879485-60879504 | Msa0511360:intron | 30.0% | |
| AGAATTTCTGAACTGTTACA+GGG | + | chr3_4:60879486-60879505 | Msa0511360:intron | 30.0% | |
| CAGAAGTGAAAAAATCGAAT+TGG | + | chr3_4:60879557-60879576 | Msa0511360:intron | 30.0% | |
| AGGTTAGATTAGGTGTTAAT+AGG | - | chr3_4:60879658-60879677 | None:intergenic | 30.0% | |
| ATTACACCAGAAACTTTACA+AGG | + | chr3_4:60879834-60879853 | Msa0511360:intron | 30.0% | |
| TTACACCAGAAACTTTACAA+GGG | + | chr3_4:60879835-60879854 | Msa0511360:intron | 30.0% | |
| ! | CTAACTTGTACTTACAAATC+CGG | + | chr3_4:60879893-60879912 | Msa0511360:intron | 30.0% |
| ACACTCAACAATATTGAGTT+TGG | + | chr3_4:60880005-60880024 | Msa0511360:intron | 30.0% | |
| GAAACTGTCTTATATAGTGA+GGG | + | chr3_4:60880105-60880124 | Msa0511360:intron | 30.0% | |
| TAAGATTTACCTCTTTAACG+TGG | + | chr3_4:60880152-60880171 | Msa0511360:intron | 30.0% | |
| AAGATTTACCTCTTTAACGT+GGG | + | chr3_4:60880153-60880172 | Msa0511360:intron | 30.0% | |
| ! | ATTTTATTCCCACGTTAAAG+AGG | - | chr3_4:60880164-60880183 | None:intergenic | 30.0% |
| CAATAAGAGAATACACCAAA+GGG | - | chr3_4:60880290-60880309 | None:intergenic | 30.0% | |
| ACAATAAGAGAATACACCAA+AGG | - | chr3_4:60880291-60880310 | None:intergenic | 30.0% | |
| ATAACTTAGTCCAACAAATC+AGG | - | chr3_4:60880729-60880748 | None:intergenic | 30.0% | |
| TATCTTGATGTTGTAGTATC+TGG | + | chr3_4:60880811-60880830 | Msa0511360:intron | 30.0% | |
| TAAATATTTCCCCACAACAT+AGG | + | chr3_4:60880847-60880866 | Msa0511360:intron | 30.0% | |
| TATCTCTATTCCTATGTTGT+GGG | - | chr3_4:60880860-60880879 | None:intergenic | 30.0% | |
| TTATCTCTATTCCTATGTTG+TGG | - | chr3_4:60880861-60880880 | None:intergenic | 30.0% | |
| TTTCTTTCCTGTAATTTCAC+TGG | - | chr3_4:60880919-60880938 | None:intergenic | 30.0% | |
| ATTCTACATGTGTAACAAAC+AGG | - | chr3_4:60881156-60881175 | None:intergenic | 30.0% | |
| ATCTTCACCAAATCATTTCA+AGG | - | chr3_4:60881180-60881199 | None:intergenic | 30.0% | |
| AGTACTTCTTATCACATTAC+TGG | - | chr3_4:60881247-60881266 | None:intergenic | 30.0% | |
| ! | AGTAATGTGATAAGAAGTAC+TGG | + | chr3_4:60881246-60881265 | Msa0511360:intron | 30.0% |
| !! | AATGCCAACTATAGTTTTAC+TGG | + | chr3_4:60881305-60881324 | Msa0511360:intron | 30.0% |
| !!! | TAGTTTTGGAAGAGACTTAT+TGG | + | chr3_4:60881336-60881355 | Msa0511360:intron | 30.0% |
| !!! | AGTTTTGGAAGAGACTTATT+GGG | + | chr3_4:60881337-60881356 | Msa0511360:intron | 30.0% |
| TTGCAAAGATAATCAACCTA+AGG | + | chr3_4:60881452-60881471 | Msa0511360:intron | 30.0% | |
| GTAGGAGAATCAAGAAAAAT+CGG | - | chr3_4:60881776-60881795 | None:intergenic | 30.0% | |
| TGATTCTCCTACAATTGAAA+TGG | + | chr3_4:60881784-60881803 | Msa0511360:intron | 30.0% | |
| CATTTCTCCATTTCAATTGT+AGG | - | chr3_4:60881794-60881813 | None:intergenic | 30.0% | |
| ACAATTGAAATGGAGAAATG+AGG | + | chr3_4:60881794-60881813 | Msa0511360:intron | 30.0% | |
| CAATTGAAATGGAGAAATGA+GGG | + | chr3_4:60881795-60881814 | Msa0511360:intron | 30.0% | |
| ACTAAGATATATGCCTTTAG+GGG | - | chr3_4:60881885-60881904 | None:intergenic | 30.0% | |
| CTACTAAGATATATGCCTTT+AGG | - | chr3_4:60881887-60881906 | None:intergenic | 30.0% | |
| ! | ACCCTTGTTTAAACTAAAAC+TGG | - | chr3_4:60881980-60881999 | None:intergenic | 30.0% |
| AAGTTATAGGGGTTTAGATA+AGG | - | chr3_4:60882074-60882093 | None:intergenic | 30.0% | |
| AACAAACACGAAGTTCATTA+AGG | - | chr3_4:60882243-60882262 | None:intergenic | 30.0% | |
| CACACAAATTATATTCACCT+TGG | - | chr3_4:60882311-60882330 | None:intergenic | 30.0% | |
| AAGTTCGATATTAACGCCTT+TGG | - | chr3_4:60878513-60878532 | None:intergenic | 35.0% | |
| ! | GGAAAATTTCCTTTTGGATC+TGG | + | chr3_4:60878535-60878554 | Msa0511360:CDS | 35.0% |
| ! | ATTTCCTTTTGGATCTGGAT+AGG | + | chr3_4:60878540-60878559 | Msa0511360:CDS | 35.0% |
| GTTGGAAAAGAAAAACGTTG+AGG | - | chr3_4:60878719-60878738 | None:intergenic | 35.0% | |
| TAGCACAACACTACTTCAAA+TGG | + | chr3_4:60878753-60878772 | Msa0511360:intron | 35.0% | |
| CGTCAAAATTCAGTGATTCT+TGG | - | chr3_4:60878796-60878815 | None:intergenic | 35.0% | |
| TTAAGTTATGGCTTCCAGTT+CGG | + | chr3_4:60878871-60878890 | Msa0511360:intron | 35.0% | |
| AAGTACTTGCATACAGTTCA+TGG | - | chr3_4:60878902-60878921 | None:intergenic | 35.0% | |
| ACTTCAATTCAAGGTTATGC+TGG | + | chr3_4:60878989-60879008 | Msa0511360:intron | 35.0% | |
| CTTCAATTCAAGGTTATGCT+GGG | + | chr3_4:60878990-60879009 | Msa0511360:intron | 35.0% | |
| CTAGGTTTCATTTCTTGGAT+TGG | + | chr3_4:60879053-60879072 | Msa0511360:intron | 35.0% | |
| ACAAGATAGATCAAGGTTGA+GGG | - | chr3_4:60879273-60879292 | None:intergenic | 35.0% | |
| GGCTTAAAAAACAAATGGAG+AGG | - | chr3_4:60879765-60879784 | None:intergenic | 35.0% | |
| AGAAACTTTACAAGGGATGA+GGG | + | chr3_4:60879842-60879861 | Msa0511360:intron | 35.0% | |
| CAATATTGTTGAGTGTGAAG+AGG | - | chr3_4:60880001-60880020 | None:intergenic | 35.0% | |
| !! | ACAATATTGAGTTTGGTGTG+TGG | + | chr3_4:60880012-60880031 | Msa0511360:intron | 35.0% |
| !! | AGTTTGGTGTGTGGATAATT+TGG | + | chr3_4:60880021-60880040 | Msa0511360:intron | 35.0% |
| TATTACAAGCCTATCCATCT+GGG | - | chr3_4:60880054-60880073 | None:intergenic | 35.0% | |
| CGAAACTGTCTTATATAGTG+AGG | + | chr3_4:60880104-60880123 | Msa0511360:intron | 35.0% | |
| TTCAGTTGCAGAAATTTCAC+TGG | + | chr3_4:60880212-60880231 | Msa0511360:intron | 35.0% | |
| !!! | ATGGTAAATCTTTTGAGACG+TGG | + | chr3_4:60880259-60880278 | Msa0511360:CDS | 35.0% |
| ! | AGCTATTTGCTAAAAGCTAG+TGG | - | chr3_4:60880385-60880404 | None:intergenic | 35.0% |
| !!! | ACTAGCTTTTAGCAAATAGC+TGG | + | chr3_4:60880384-60880403 | Msa0511360:intron | 35.0% |
| TATACTTGGCAAAAGAAGCT+CGG | - | chr3_4:60880505-60880524 | None:intergenic | 35.0% | |
| TATTTGTCAATATTGCTGCG+AGG | + | chr3_4:60880523-60880542 | Msa0511360:CDS | 35.0% | |
| ! | CTAGTGTATGTCTTTTTGGA+TGG | + | chr3_4:60880770-60880789 | Msa0511360:intron | 35.0% |
| ATCTCTATTCCTATGTTGTG+GGG | - | chr3_4:60880859-60880878 | None:intergenic | 35.0% | |
| CAATCAACGAAACTATTCAC+TGG | + | chr3_4:60880945-60880964 | Msa0511360:intron | 35.0% | |
| TGCATACAACATATATGCTC+TGG | - | chr3_4:60881132-60881151 | None:intergenic | 35.0% | |
| GAACATGCTGAAGAAAAAAG+AGG | + | chr3_4:60881216-60881235 | Msa0511360:intron | 35.0% | |
| ! | CAATGTAGGATCTTGGATTT+TGG | - | chr3_4:60881275-60881294 | None:intergenic | 35.0% |
| AATCCAAGATCCTACATTGT+TGG | + | chr3_4:60881276-60881295 | Msa0511360:intron | 35.0% | |
| ATCCAAGATCCTACATTGTT+GGG | + | chr3_4:60881277-60881296 | Msa0511360:intron | 35.0% | |
| CACACCAGTAAAACTATAGT+TGG | - | chr3_4:60881312-60881331 | None:intergenic | 35.0% | |
| !! | CCCTAACTGGAATATTTTTG+GGG | - | chr3_4:60881403-60881422 | None:intergenic | 35.0% |
| CCCCAAAAATATTCCAGTTA+GGG | + | chr3_4:60881400-60881419 | Msa0511360:intron | 35.0% | |
| ! | GCCCTAACTGGAATATTTTT+GGG | - | chr3_4:60881404-60881423 | None:intergenic | 35.0% |
| ! | TGCCCTAACTGGAATATTTT+TGG | - | chr3_4:60881405-60881424 | None:intergenic | 35.0% |
| TATAGGGGTTTAGATAAGGA+GGG | - | chr3_4:60882070-60882089 | None:intergenic | 35.0% | |
| TTATAGGGGTTTAGATAAGG+AGG | - | chr3_4:60882071-60882090 | None:intergenic | 35.0% | |
| GTTGAACGAGCATATATTTG+TGG | + | chr3_4:60882174-60882193 | Msa0511360:intron | 35.0% | |
| !! | ACTTCGTGTTTGTTATGTCA+TGG | + | chr3_4:60882249-60882268 | Msa0511360:CDS | 35.0% |
| AGGCGTTAATATCGAACTTG+TGG | + | chr3_4:60878514-60878533 | Msa0511360:CDS | 40.0% | |
| ACTTCCTATCCAGATCCAAA+AGG | - | chr3_4:60878547-60878566 | None:intergenic | 40.0% | |
| GATCTGGATAGGAAGTCAAA+AGG | + | chr3_4:60878551-60878570 | Msa0511360:CDS | 40.0% | |
| TGTATCTTTAGGCTCATAGG+AGG | + | chr3_4:60878817-60878836 | Msa0511360:intron | 40.0% | |
| TTATGCTGGGATTGATGGAA+AGG | + | chr3_4:60879003-60879022 | Msa0511360:intron | 40.0% | |
| TATGCTGGGATTGATGGAAA+GGG | + | chr3_4:60879004-60879023 | Msa0511360:intron | 40.0% | |
| ATTGATGGAAAGGGATGGAA+TGG | + | chr3_4:60879013-60879032 | Msa0511360:intron | 40.0% | |
| CAAGATAGATCAAGGTTGAG+GGG | - | chr3_4:60879272-60879291 | None:intergenic | 40.0% | |
| GACAAGATAGATCAAGGTTG+AGG | - | chr3_4:60879274-60879293 | None:intergenic | 40.0% | |
| GATTTGTGGCTTGAAGACTT+CGG | - | chr3_4:60879351-60879370 | None:intergenic | 40.0% | |
| !! | TACTTTGGTGCCGCTTTATT+AGG | + | chr3_4:60879404-60879423 | Msa0511360:intron | 40.0% |
| ATTGGGTGCAAGGTTAGATT+AGG | - | chr3_4:60879668-60879687 | None:intergenic | 40.0% | |
| ! | AAGGTGTCCTGAAATCAAGT+AGG | + | chr3_4:60879719-60879738 | Msa0511360:intron | 40.0% |
| CTCATCCCTTGTAAAGTTTC+TGG | - | chr3_4:60879843-60879862 | None:intergenic | 40.0% | |
| CAGAAACTTTACAAGGGATG+AGG | + | chr3_4:60879841-60879860 | Msa0511360:intron | 40.0% | |
| ! | TACTTACAAATCCGGCTTGT+AGG | + | chr3_4:60879901-60879920 | Msa0511360:intron | 40.0% |
| ! | ACTTACAAATCCGGCTTGTA+GGG | + | chr3_4:60879902-60879921 | Msa0511360:intron | 40.0% |
| ! | TTGAGTGTGAAGAGGTGTAT+TGG | - | chr3_4:60879993-60880012 | None:intergenic | 40.0% |
| TTGGTGTGTGGATAATTTGG+TGG | + | chr3_4:60880024-60880043 | Msa0511360:intron | 40.0% | |
| TGGTGTGTGGATAATTTGGT+GGG | + | chr3_4:60880025-60880044 | Msa0511360:intron | 40.0% | |
| CTATTACAAGCCTATCCATC+TGG | - | chr3_4:60880055-60880074 | None:intergenic | 40.0% | |
| CAGTTTCGCAAGAATGAGTT+AGG | - | chr3_4:60880092-60880111 | None:intergenic | 40.0% | |
| TTTACCATCTGTCAACCACA+CGG | - | chr3_4:60880247-60880266 | None:intergenic | 40.0% | |
| ACTGCAACGATGTAGTACTA+AGG | + | chr3_4:60880313-60880332 | Msa0511360:CDS | 40.0% | |
| AAGGGAAGAGAGCAAGATAA+AGG | - | chr3_4:60880410-60880429 | None:intergenic | 40.0% | |
| AAGAAGATGAGCGGTGAAAA+GGG | - | chr3_4:60880428-60880447 | None:intergenic | 40.0% | |
| AAAGAAGATGAGCGGTGAAA+AGG | - | chr3_4:60880429-60880448 | None:intergenic | 40.0% | |
| ! | TTTTCACCGCTCATCTTCTT+TGG | + | chr3_4:60880428-60880447 | Msa0511360:intron | 40.0% |
| TTTCACCGCTCATCTTCTTT+GGG | + | chr3_4:60880429-60880448 | Msa0511360:intron | 40.0% | |
| ! | GCTGCTAGTGTATGTCTTTT+TGG | + | chr3_4:60880766-60880785 | Msa0511360:intron | 40.0% |
| GACTTCTCCAGTGAAATTAC+AGG | + | chr3_4:60880909-60880928 | Msa0511360:intron | 40.0% | |
| CCGTTCAATCAACGAAACAA+CGG | - | chr3_4:60880980-60880999 | None:intergenic | 40.0% | |
| ! | CCGTTGTTTCGTTGATTGAA+CGG | + | chr3_4:60880977-60880996 | Msa0511360:intron | 40.0% |
| ! | ACTTCGTTGGTAAGGCTTTA+AGG | + | chr3_4:60881003-60881022 | Msa0511360:intron | 40.0% |
| ! | CTTCGTTGGTAAGGCTTTAA+GGG | + | chr3_4:60881004-60881023 | Msa0511360:intron | 40.0% |
| AAGGGTAGACTTCGTTGATA+AGG | + | chr3_4:60881022-60881041 | Msa0511360:intron | 40.0% | |
| CATTTCTCACCCAACAATGT+AGG | - | chr3_4:60881289-60881308 | None:intergenic | 40.0% | |
| ! | TACTGGTGTGTGAGTAGTTT+TGG | + | chr3_4:60881322-60881341 | Msa0511360:intron | 40.0% |
| GCCCCAAAAATATTCCAGTT+AGG | + | chr3_4:60881399-60881418 | Msa0511360:intron | 40.0% | |
| ! | AGATCCAAGGAAAGCATGAT+TGG | + | chr3_4:60881819-60881838 | Msa0511360:intron | 40.0% |
| ! | GATCCAAGGAAAGCATGATT+GGG | + | chr3_4:60881820-60881839 | Msa0511360:intron | 40.0% |
| TTTCCAAACATGTCCCCTAA+AGG | + | chr3_4:60881869-60881888 | Msa0511360:intron | 40.0% | |
| TTGGACACTTCATGCATTGA+TGG | - | chr3_4:60882292-60882311 | None:intergenic | 40.0% | |
| ! | ATCAATGCATGAAGTGTCCA+AGG | + | chr3_4:60882291-60882310 | Msa0511360:CDS | 40.0% |
| CGCTGTATCTTTAGGCTCAT+AGG | + | chr3_4:60878814-60878833 | Msa0511360:intron | 45.0% | |
| CAAGGTTATGCTGGGATTGA+TGG | + | chr3_4:60878998-60879017 | Msa0511360:intron | 45.0% | |
| TAACCTTGCACCCAATGTGT+TGG | + | chr3_4:60879672-60879691 | Msa0511360:intron | 45.0% | |
| AACCTTGCACCCAATGTGTT+GGG | + | chr3_4:60879673-60879692 | Msa0511360:intron | 45.0% | |
| AGGACACCTTTGTCTTGACA+CGG | - | chr3_4:60879709-60879728 | None:intergenic | 45.0% | |
| GTGTCCTGAAATCAAGTAGG+CGG | + | chr3_4:60879722-60879741 | Msa0511360:intron | 45.0% | |
| CAGTTCCCAAAGAAGATGAG+CGG | - | chr3_4:60880437-60880456 | None:intergenic | 45.0% | |
| CAAAAGAAGCTCGGCGAATT+CGG | - | chr3_4:60880496-60880515 | None:intergenic | 45.0% | |
| TGTCAATATTGCTGCGAGGA+AGG | + | chr3_4:60880527-60880546 | Msa0511360:CDS | 45.0% | |
| CAACAAATCAGGCACTAGAC+TGG | - | chr3_4:60880718-60880737 | None:intergenic | 45.0% | |
| ! | CAGTCTAGTGCCTGATTTGT+TGG | + | chr3_4:60880716-60880735 | Msa0511360:intron | 45.0% |
| GATTGAACGGTAGACTTCGT+TGG | + | chr3_4:60880990-60881009 | Msa0511360:intron | 45.0% | |
| AACGGTAGACTTCGTTGGTA+AGG | + | chr3_4:60880995-60881014 | Msa0511360:intron | 45.0% | |
| CACCCAACAATGTAGGATCT+TGG | - | chr3_4:60881282-60881301 | None:intergenic | 45.0% | |
| !!! | TGCTCTGTTTTTGCCCTAAC+TGG | - | chr3_4:60881416-60881435 | None:intergenic | 45.0% |
| CAGCTTTCATGTCACTCCTT+CGG | - | chr3_4:60881500-60881519 | None:intergenic | 45.0% | |
| GAGAAATGAGGGAAGATCCA+AGG | + | chr3_4:60881806-60881825 | Msa0511360:intron | 45.0% | |
| TCACCCAATCATGCTTTCCT+TGG | - | chr3_4:60881826-60881845 | None:intergenic | 45.0% | |
| ! | ATGCCTTTAGGGGACATGTT+TGG | - | chr3_4:60881875-60881894 | None:intergenic | 45.0% |
| !! | TATTTAAATAAAAAAATTAC+AGG | - | chr3_4:60878669-60878688 | None:intergenic | 5.0% |
| !! | AAAATAAATAAAACAAATAA+AGG | - | chr3_4:60880623-60880642 | None:intergenic | 5.0% |
| !!! | TTTGTTTTATTTATTTTTAT+AGG | + | chr3_4:60880626-60880645 | Msa0511360:intron | 5.0% |
| !!! | TTGTTTTATTTATTTTTATA+GGG | + | chr3_4:60880627-60880646 | Msa0511360:intron | 5.0% |
| AGTTCATGGAACTGCCGAAC+TGG | - | chr3_4:60878888-60878907 | None:intergenic | 50.0% | |
| CTGGGATTGATGGAAAGGGA+TGG | + | chr3_4:60879008-60879027 | Msa0511360:intron | 50.0% | |
| TGGAAAGGGATGGAATGGAG+CGG | + | chr3_4:60879018-60879037 | Msa0511360:intron | 50.0% | |
| GAGCGGAGTGGAATGATACT+AGG | + | chr3_4:60879035-60879054 | Msa0511360:intron | 50.0% | |
| AAGCTGTGAGAAGGTCGCAT+CGG | - | chr3_4:60879194-60879213 | None:intergenic | 50.0% | |
| ACTGGTGTGCCCAACACATT+GGG | - | chr3_4:60879685-60879704 | None:intergenic | 50.0% | |
| TACTGGTGTGCCCAACACAT+TGG | - | chr3_4:60879686-60879705 | None:intergenic | 50.0% | |
| CCTTTGTCTTGACACGGTAC+TGG | - | chr3_4:60879703-60879722 | None:intergenic | 50.0% | |
| CCAGTACCGTGTCAAGACAA+AGG | + | chr3_4:60879700-60879719 | Msa0511360:intron | 50.0% | |
| CACTCCGCCTACTTGATTTC+AGG | - | chr3_4:60879729-60879748 | None:intergenic | 50.0% | |
| ! | AAATCCGGCTTGTAGGGTGA+AGG | + | chr3_4:60879908-60879927 | Msa0511360:intron | 50.0% |
| ! | AATCCGGCTTGTAGGGTGAA+GGG | + | chr3_4:60879909-60879928 | Msa0511360:intron | 50.0% |
| ! | AATTTGGTGGGATGCCCAGA+TGG | + | chr3_4:60880037-60880056 | Msa0511360:intron | 50.0% |
| TCTACCGTGTGGTTGACAGA+TGG | + | chr3_4:60880240-60880259 | Msa0511360:intron | 50.0% | |
| TGAGACGTGGATTTGCCCTT+TGG | + | chr3_4:60880272-60880291 | Msa0511360:CDS | 50.0% | |
| TATTGCTGCGAGGAAGGATC+TGG | + | chr3_4:60880533-60880552 | Msa0511360:CDS | 50.0% | |
| CACTGGAGAAGTCTACTGTG+TGG | - | chr3_4:60880902-60880921 | None:intergenic | 50.0% | |
| ATCAACCTAAGGCAGCACAC+AGG | + | chr3_4:60881463-60881482 | Msa0511360:intron | 50.0% | |
| CAAGCCCTATCCCACTAAGT+GGG | + | chr3_4:60881670-60881689 | Msa0511360:intron | 50.0% | |
| AAGCCCTATCCCACTAAGTG+GGG | + | chr3_4:60881671-60881690 | Msa0511360:intron | 50.0% | |
| GATTCAGCCACGACAGTTAG+AGG | + | chr3_4:60881844-60881863 | Msa0511360:intron | 50.0% | |
| GGAAATGCCTCTAACTGTCG+TGG | - | chr3_4:60881854-60881873 | None:intergenic | 50.0% | |
| TGCGCTGTGAAGCTGTGAGA+AGG | - | chr3_4:60879203-60879222 | None:intergenic | 55.0% | |
| CACAGCTTCACAGCGCAAAC+TGG | + | chr3_4:60879206-60879225 | Msa0511360:intron | 55.0% | |
| GAGGGGCTGAATCAGGAGAA+CGG | - | chr3_4:60879255-60879274 | None:intergenic | 55.0% | |
| CAAGGTTGAGGGGCTGAATC+AGG | - | chr3_4:60879262-60879281 | None:intergenic | 55.0% | |
| TGCCCAACACATTGGGTGCA+AGG | - | chr3_4:60879678-60879697 | None:intergenic | 55.0% | |
| TTGCCCTTCACCCTACAAGC+CGG | - | chr3_4:60879915-60879934 | None:intergenic | 55.0% | |
| CACTGGAGAAGTCTACCGTG+TGG | + | chr3_4:60880229-60880248 | Msa0511360:intron | 55.0% | |
| CTCTTCCTGTGTGCTGCCTT+AGG | - | chr3_4:60881471-60881490 | None:intergenic | 55.0% | |
| CCACTTAGTGGGATAGGGCT+TGG | - | chr3_4:60881672-60881691 | None:intergenic | 55.0% | |
| CCAAGCCCTATCCCACTAAG+TGG | + | chr3_4:60881669-60881688 | Msa0511360:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+GGG | - | chr3_4:60881677-60881696 | None:intergenic | 55.0% | |
| CCTATCCCACTAAGTGGGGT+CGG | + | chr3_4:60881675-60881694 | Msa0511360:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr3_4:60881683-60881702 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr3_4:60881684-60881703 | None:intergenic | 55.0% | |
| AGGGATGGAATGGAGCGGAG+TGG | + | chr3_4:60879023-60879042 | Msa0511360:intron | 60.0% | |
| GGTGGGATGCCCAGATGGAT+AGG | + | chr3_4:60880042-60880061 | Msa0511360:intron | 60.0% | |
| AGGCAGCACACAGGAAGAGC+AGG | + | chr3_4:60881472-60881491 | Msa0511360:intron | 60.0% | |
| !! | ACAGGAAGAGCAGGTGCCGA+AGG | + | chr3_4:60881481-60881500 | Msa0511360:intron | 60.0% |
| CCGACCCCACTTAGTGGGAT+AGG | - | chr3_4:60881678-60881697 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 60878503 | 60882405 | 60878503 | ID=Msa0511360;Name=Msa0511360 |
| chr3_4 | mRNA | 60878503 | 60882405 | 60878503 | ID=Msa0511360-mRNA-1;Parent=Msa0511360;Name=Msa0511360-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.5|0.4|0.8|0.75|0.8|5|0|136 |
| chr3_4 | exon | 60878503 | 60878572 | 60878503 | ID=Msa0511360-mRNA-1:exon:14751;Parent=Msa0511360-mRNA-1 |
| chr3_4 | exon | 60880259 | 60880334 | 60880259 | ID=Msa0511360-mRNA-1:exon:14752;Parent=Msa0511360-mRNA-1 |
| chr3_4 | exon | 60880464 | 60880587 | 60880464 | ID=Msa0511360-mRNA-1:exon:14753;Parent=Msa0511360-mRNA-1 |
| chr3_4 | exon | 60882175 | 60882312 | 60882175 | ID=Msa0511360-mRNA-1:exon:14754;Parent=Msa0511360-mRNA-1 |
| chr3_4 | exon | 60882403 | 60882405 | 60882403 | ID=Msa0511360-mRNA-1:exon:14755;Parent=Msa0511360-mRNA-1 |
| chr3_4 | CDS | 60878503 | 60878572 | 60878503 | ID=Msa0511360-mRNA-1:cds;Parent=Msa0511360-mRNA-1 |
| chr3_4 | CDS | 60880259 | 60880334 | 60880259 | ID=Msa0511360-mRNA-1:cds;Parent=Msa0511360-mRNA-1 |
| chr3_4 | CDS | 60880464 | 60880587 | 60880464 | ID=Msa0511360-mRNA-1:cds;Parent=Msa0511360-mRNA-1 |
| chr3_4 | CDS | 60882175 | 60882312 | 60882175 | ID=Msa0511360-mRNA-1:cds;Parent=Msa0511360-mRNA-1 |
| chr3_4 | CDS | 60882403 | 60882405 | 60882403 | ID=Msa0511360-mRNA-1:cds;Parent=Msa0511360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
