AlfalfaGEDB | Msa0511550

M. sativa cultivar zhongmu-4 / Msa0511550

KEGG: K04730
GO: GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0511550	XP_013461023.1	96.579	643	22	0	1	643	1	643	0.0	1283

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0511550	sp\|O48788\|Y2267_ARATH	35.135	629	370	16	11	624	7	612	4.39e-100	322

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0511550	A0A072UZR6	96.579	643	22	0	1	643	1	643	0.0	1283

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0419470	Msa0511550	0.897907	8.911565e-77	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0511550	MtrunA17_Chr3g0117921	96.579	643	22	0	1	643	1	643	0.0	1283
Msa0511550	MtrunA17_Chr2g0288391	47.114	641	296	12	11	641	8	615	0.0	540
Msa0511550	MtrunA17_Chr8g0376301	43.231	458	181	9	187	642	10	390	1.35e-108	333
Msa0511550	MtrunA17_Chr1g0209521	32.127	663	359	18	18	632	19	638	3.55e-92	299
Msa0511550	MtrunA17_Chr3g0128551	33.281	631	355	18	30	637	33	620	3.79e-89	290
Msa0511550	MtrunA17_Chr6g0478621	32.750	629	375	18	51	643	44	660	2.28e-84	278
Msa0511550	MtrunA17_Chr5g0432851	33.178	642	374	21	8	635	31	631	6.44e-84	276
Msa0511550	MtrunA17_Chr7g0245171	31.839	647	383	18	3	632	2	607	6.31e-82	270
Msa0511550	MtrunA17_Chr5g0434551	33.773	607	351	20	51	637	46	621	1.69e-81	270
Msa0511550	MtrunA17_Chr8g0387791	31.300	623	364	16	30	635	24	599	2.15e-81	270

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0511550	AT2G26730.1	35.135	629	370	16	11	624	7	612	4.46e-101	322
Msa0511550	AT2G36570.1	33.739	658	357	22	26	634	21	648	3.27e-89	291
Msa0511550	AT1G68400.1	34.319	609	335	17	51	624	51	629	2.94e-88	289
Msa0511550	AT1G48480.1	33.721	602	351	20	51	624	54	635	2.17e-86	283
Msa0511550	AT5G24100.1	31.336	651	373	18	1	624	1	604	8.38e-86	281
Msa0511550	AT1G64210.1	31.250	656	353	18	8	637	4	587	1.01e-85	280
Msa0511550	AT5G58300.3	32.057	627	371	20	30	639	49	637	2.27e-81	270
Msa0511550	AT5G58300.1	32.057	627	371	20	30	639	49	637	2.27e-81	270
Msa0511550	AT5G58300.2	32.057	627	371	20	30	639	49	637	2.27e-81	270
Msa0511550	AT3G08680.1	30.828	652	377	21	1	624	2	607	1.04e-80	268

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Find 124 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCATGGAAGCCTATACA+AGG	0.620276	3_4:-61140555	Msa0511550:CDS
AAAGTGGACACTCTCTTGAT+TGG	0.455074	3_4:-61139965	Msa0511550:CDS
AAATCTCGATCATCTGTCAA+AGG	0.570198	3_4:+61139419	None:intergenic
AAATGAGTCTAAAACAAATC+TGG	0.440308	3_4:-61141693	Msa0511550:CDS
AACATGAAGAGGCTACCATT+TGG	0.521071	3_4:+61140356	None:intergenic
AACCATATTCGGAAGGTTTC+CGG	0.222168	3_4:+61141219	None:intergenic
AACCCACAAATAAGCGAATA+TGG	0.383373	3_4:-61139816	Msa0511550:CDS
AAGAATGGTGAACTTGTTGC+AGG	0.483012	3_4:-61139544	Msa0511550:CDS
AAGAATTGGTTTAATGGCCT+TGG	0.330656	3_4:-61140716	Msa0511550:CDS
AAGGCTGAGGTATTGAAGAG+AGG	0.541754	3_4:+61141402	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGATGCATGAATTTGACAA+GGG	+	chr3_4:61139525-61139544	None:intergenic	30.0%
TAACATTAACCATATTCGGA+AGG	+	chr3_4:61139910-61139929	None:intergenic	30.0%
AAGTTGGAGAAATCAAAATC+AGG	+	chr3_4:61139983-61140002	None:intergenic	30.0%
GACGTTAAAAACTTCAAAGT+TGG	+	chr3_4:61139999-61140018	None:intergenic	30.0%
ATTGGCAAATCATCAAGAAA+TGG	+	chr3_4:61140187-61140206	None:intergenic	30.0%
ACTATGTAGCCTGAATAAAT+TGG	+	chr3_4:61140205-61140224	None:intergenic	30.0%
TATTCAGGCTACATAGTTAT+TGG	-	chr3_4:61140208-61140227	Msa0511550:intron	30.0%
ATGACCAAAAATAGAGAAAC+AGG	-	chr3_4:61140277-61140296	Msa0511550:intron	30.0%
TATCTAGCATAACCTTGTAT+AGG	+	chr3_4:61140579-61140598	None:intergenic	30.0%
TACAAGGTTATGCTAGATAA+TGG	-	chr3_4:61140580-61140599	Msa0511550:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	61139428	61141713	61139428	ID=Msa0511550;Name=Msa0511550
chr3_4	mRNA	61139428	61141713	61139428	ID=Msa0511550-mRNA-1;Parent=Msa0511550;Name=Msa0511550-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|0\|0\|1\|1\|1\|2\|0\|643
chr3_4	exon	61140348	61141713	61140348	ID=Msa0511550-mRNA-1:exon:14835;Parent=Msa0511550-mRNA-1
chr3_4	exon	61139428	61139993	61139428	ID=Msa0511550-mRNA-1:exon:14834;Parent=Msa0511550-mRNA-1
chr3_4	CDS	61140348	61141713	61140348	ID=Msa0511550-mRNA-1:cds;Parent=Msa0511550-mRNA-1
chr3_4	CDS	61139428	61139993	61139428	ID=Msa0511550-mRNA-1:cds;Parent=Msa0511550-mRNA-1

Gene Sequence

>Msa0511550

ATGAGTCTAAAACAAATCTGGTTCTGGACAGTACTCACTTTTCTGTTTCCGTTTTTTCTAAAGACCAATTCAGAATCAGAAAATGTCAGAAAAGCCCTTGTCAAATTCATGCATCAACTTGAACCACCCGATCAGAATTCCATGTGGGGTTGGAACCTCACATCAGATCCATGCACTCATAACTGGCACGGCGTAACTTGCTACGCAAACAACCAATACATTAAGACTATAGTTCTTGACAACCTTTATTTCACCGGTGTTCTAGACGCTACTTCTCTTTGCATTGCTACCTCTCTTCAATACCTCAGCCTTAACAACAATTACTTACACGGTTTTATATCGGAGGATATAAAAGACTGTAAGTTCTTGACACACTTGCTTCTTAGTGGTAACAAATTCTCTGGCAATCTTCCTGCTTCCATTCCTCAACTACTTAACATGAAGCGCCTTCATGTTTCGGACAATCTCTTCACCGGAAACCTTCCGAATATGGTTAATGTTACAAGCTTGATATCTTTTTTAGCACAAAACAACAACTTCACCGGTCAGATTCCTGATTTTGATTTCTCCAACTTTGAAGTTTTTAACGTCTCTAACAACAATTTACGTGGTCCTATTCCTGATGTTGGAGGTAGATTTAATGCAGATAGCTTTTATGGTAATCCTAATTTATGTGGAAAACCAATTTCAAACTCGTCATGTCCGCCTCCACCACCACCTCCTCCTCCAATCATTATAAAAGACAAAAAGAAAAATCCATTTCTTGATGATTTGCCAATTTATTCAGGCTACATAGTTATTGGTTTAATTTTCATAATTTTCTTGATCTTCAAGTTGTCAAGAAAATGCATGACCAAAAATAGAGAAACAGGATTAGATCATGTTGAAAAGAAGGACATGTCACAAGACACTAGCGGTGGCGTTGTTATTGTTGGTGGTGAAAAGCTTAGTGAGATATTAAATTCAAATGGATCAAAGAATTGGTTTAATGGCCTTGGAGTTAGATCAGAGTATTCTATGACATCTATGGAAAGTGGAGTGACTACATCAGGTCTTGTTCTTCTTTCAAGTAGAAAGCTTAGGGGATTGCAATTTGAGGATTTGTTAAGTGCTCCTGCTGAATTGATTAGGAGAGGAAAGCATGGAAGCCTATACAAGGTTATGCTAGATAATGGTGTGCTTTTGGCTGTGAAGAGGATCAAGGATTGGGGGATTTCGAAGCATGAATTCGAGAGAAGGATGAACTTGATAGCTCAAGTGAAGCATACTCTTGTAATGTCACCTGTTGCATACTATTGCTCTCAGCAAGAGAAGCTTCTGGCGTATGAATATCTTCCAAATGGTAGCCTCTTCATGTTGCTCTATGGATCTCAAAGTGGACACTCTCTTGATTGGAGGAGCAGACTAGATGTTGCTGCTAAGATCGCTGAAGCTTTGGCCTATATGCATGAAGAGCTTGGTGAGAGTGGAATAGCACATGGTAACTTAAAATCAAGCAATATTCTGTTTGACAAGAATATGAACCCACAAATAAGCGAATATGGTCTAATGGTCGTGGAAAATCAAGGCGTCATCTCTCATATCAGAAGCCGCAGAAACAAAAATATGTCTGCAGCAGCCACCTTCAGAGCTGATATATATTCCTTTGGTGTGATACTTCTCGAACTCCTGACAGGAAAAGTAGTTAAAAATGATGGATTTGATTTGGTTAAATGGGTGAATTCAGTGATCAGTGAGGAATGGACTGCAGAAGTTTTTGATAGGTCTCTAATCTCACAAGGTGCTTCTGAAGAAAGAATGGTGAACTTGTTGCAGGTGGCACTAAAATGCATCAATCCTTCTCCAAATGATAAGCTAAGTATGAGTCAAGTGGCGCTCATCACAAATGCGTTGAAAGATGAAGACGAAAAATCTGTATCCTTTGACAGATGA

Protein sequence

>Msa0511550

MSLKQIWFWTVLTFLFPFFLKTNSESENVRKALVKFMHQLEPPDQNSMWGWNLTSDPCTHNWHGVTCYANNQYIKTIVLDNLYFTGVLDATSLCIATSLQYLSLNNNYLHGFISEDIKDCKFLTHLLLSGNKFSGNLPASIPQLLNMKRLHVSDNLFTGNLPNMVNVTSLISFLAQNNNFTGQIPDFDFSNFEVFNVSNNNLRGPIPDVGGRFNADSFYGNPNLCGKPISNSSCPPPPPPPPPIIIKDKKKNPFLDDLPIYSGYIVIGLIFIIFLIFKLSRKCMTKNRETGLDHVEKKDMSQDTSGGVVIVGGEKLSEILNSNGSKNWFNGLGVRSEYSMTSMESGVTTSGLVLLSSRKLRGLQFEDLLSAPAELIRRGKHGSLYKVMLDNGVLLAVKRIKDWGISKHEFERRMNLIAQVKHTLVMSPVAYYCSQQEKLLAYEYLPNGSLFMLLYGSQSGHSLDWRSRLDVAAKIAEALAYMHEELGESGIAHGNLKSSNILFDKNMNPQISEYGLMVVENQGVISHIRSRRNKNMSAAATFRADIYSFGVILLELLTGKVVKNDGFDLVKWVNSVISEEWTAEVFDRSLISQGASEERMVNLLQVALKCINPSPNDKLSMSQVALITNALKDEDEKSVSFDR*