Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511670 | KEH35080.1 | 97.970 | 394 | 8 | 0 | 1 | 394 | 141 | 534 | 0.0 | 795 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511670 | sp|Q8VWZ1|AADH1_PEA | 89.567 | 393 | 41 | 0 | 1 | 393 | 111 | 503 | 0.0 | 708 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511670 | A0A072VA63 | 97.970 | 394 | 8 | 0 | 1 | 394 | 141 | 534 | 0.0 | 795 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0371360 | Msa0511670 | 0.803266 | 3.783690e-49 | -8.615850e-47 |
| Msa0419570 | Msa0511670 | 0.821142 | 4.723847e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511670 | MtrunA17_Chr3g0118081 | 97.970 | 394 | 8 | 0 | 1 | 394 | 141 | 534 | 0.0 | 795 |
| Msa0511670 | MtrunA17_Chr3g0118121 | 91.603 | 393 | 33 | 0 | 1 | 393 | 111 | 503 | 0.0 | 723 |
| Msa0511670 | MtrunA17_Chr4g0059521 | 82.697 | 393 | 68 | 0 | 1 | 393 | 111 | 503 | 0.0 | 666 |
| Msa0511670 | MtrunA17_Chr8g0390631 | 43.008 | 379 | 209 | 3 | 7 | 384 | 121 | 493 | 5.17e-107 | 323 |
| Msa0511670 | MtrunA17_Chr6g0485301 | 43.864 | 383 | 208 | 3 | 3 | 384 | 125 | 501 | 2.39e-105 | 320 |
| Msa0511670 | MtrunA17_Chr6g0485311 | 43.386 | 378 | 207 | 3 | 8 | 384 | 128 | 499 | 2.39e-103 | 314 |
| Msa0511670 | MtrunA17_Chr8g0365221 | 41.514 | 383 | 215 | 4 | 4 | 384 | 165 | 540 | 3.79e-101 | 310 |
| Msa0511670 | MtrunA17_Chr2g0310091 | 43.714 | 350 | 195 | 1 | 26 | 375 | 182 | 529 | 7.52e-101 | 309 |
| Msa0511670 | MtrunA17_Chr8g0390651 | 41.425 | 379 | 215 | 3 | 7 | 384 | 130 | 502 | 9.58e-100 | 305 |
| Msa0511670 | MtrunA17_Chr4g0059221 | 42.408 | 382 | 211 | 4 | 5 | 384 | 169 | 543 | 3.94e-98 | 302 |
| Msa0511670 | MtrunA17_Chr3g0117861 | 41.623 | 382 | 214 | 4 | 5 | 384 | 167 | 541 | 2.04e-96 | 298 |
| Msa0511670 | MtrunA17_Chr4g0074171 | 38.166 | 338 | 195 | 8 | 27 | 360 | 142 | 469 | 1.50e-57 | 195 |
| Msa0511670 | MtrunA17_Chr1g0149961 | 35.312 | 337 | 206 | 7 | 27 | 360 | 142 | 469 | 1.84e-55 | 190 |
| Msa0511670 | MtrunA17_Chr2g0294411 | 32.877 | 365 | 229 | 7 | 34 | 389 | 181 | 538 | 2.29e-55 | 192 |
| Msa0511670 | MtrunA17_Chr2g0279751 | 30.311 | 386 | 243 | 8 | 9 | 381 | 121 | 493 | 2.06e-42 | 155 |
| Msa0511670 | MtrunA17_Chr4g0049641 | 27.949 | 390 | 255 | 7 | 3 | 385 | 154 | 524 | 2.49e-42 | 155 |
| Msa0511670 | MtrunA17_Chr2g0300801 | 30.205 | 341 | 221 | 7 | 40 | 370 | 154 | 487 | 4.40e-42 | 154 |
| Msa0511670 | MtrunA17_Chr3g0124811 | 31.579 | 342 | 223 | 7 | 37 | 375 | 114 | 447 | 4.90e-41 | 151 |
| Msa0511670 | MtrunA17_Chr8g0372381 | 30.343 | 379 | 251 | 8 | 1 | 375 | 69 | 438 | 5.32e-39 | 145 |
| Msa0511670 | MtrunA17_Chr8g0384741 | 30.994 | 342 | 225 | 7 | 37 | 375 | 165 | 498 | 1.71e-37 | 142 |
| Msa0511670 | MtrunA17_Chr1g0159811 | 31.153 | 321 | 206 | 8 | 37 | 352 | 112 | 422 | 6.71e-37 | 140 |
| Msa0511670 | MtrunA17_Chr2g0328781 | 28.219 | 365 | 237 | 10 | 37 | 390 | 116 | 466 | 1.47e-35 | 136 |
| Msa0511670 | MtrunA17_Chr4g0032441 | 30.663 | 362 | 232 | 9 | 37 | 390 | 101 | 451 | 1.62e-28 | 116 |
| Msa0511670 | MtrunA17_Chr4g0060261 | 25.658 | 304 | 194 | 10 | 34 | 319 | 187 | 476 | 8.84e-15 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511670 | AT1G74920.2 | 76.982 | 391 | 90 | 0 | 1 | 391 | 106 | 496 | 0.0 | 654 |
| Msa0511670 | AT1G74920.1 | 76.982 | 391 | 90 | 0 | 1 | 391 | 111 | 501 | 0.0 | 654 |
| Msa0511670 | AT3G48170.1 | 75.573 | 393 | 96 | 0 | 1 | 393 | 111 | 503 | 0.0 | 642 |
| Msa0511670 | AT3G24503.1 | 46.053 | 380 | 199 | 3 | 6 | 384 | 126 | 500 | 2.74e-118 | 353 |
| Msa0511670 | AT3G48000.1 | 42.744 | 379 | 208 | 4 | 8 | 384 | 166 | 537 | 2.39e-101 | 311 |
| Msa0511670 | AT1G23800.1 | 41.053 | 380 | 215 | 4 | 7 | 384 | 161 | 533 | 6.55e-96 | 296 |
| Msa0511670 | AT1G79440.1 | 42.183 | 339 | 194 | 2 | 37 | 375 | 184 | 520 | 3.91e-88 | 276 |
| Msa0511670 | AT3G66658.1 | 34.540 | 359 | 219 | 8 | 35 | 384 | 182 | 533 | 4.61e-58 | 198 |
| Msa0511670 | AT3G66658.2 | 34.540 | 359 | 219 | 8 | 35 | 384 | 182 | 533 | 9.32e-58 | 198 |
| Msa0511670 | AT2G24270.4 | 36.202 | 337 | 203 | 7 | 27 | 360 | 142 | 469 | 2.14e-56 | 193 |
| Msa0511670 | AT2G24270.3 | 36.202 | 337 | 203 | 7 | 27 | 360 | 142 | 469 | 2.17e-56 | 192 |
| Msa0511670 | AT2G24270.1 | 36.202 | 337 | 203 | 7 | 27 | 360 | 142 | 469 | 2.17e-56 | 192 |
| Msa0511670 | AT2G24270.2 | 36.202 | 337 | 203 | 7 | 27 | 360 | 182 | 509 | 3.96e-56 | 193 |
| Msa0511670 | AT1G23800.2 | 42.793 | 222 | 120 | 3 | 8 | 227 | 162 | 378 | 3.41e-51 | 177 |
| Msa0511670 | AT1G54100.2 | 30.952 | 378 | 247 | 8 | 14 | 382 | 126 | 498 | 7.80e-45 | 162 |
| Msa0511670 | AT1G54100.1 | 30.952 | 378 | 247 | 8 | 14 | 382 | 126 | 498 | 7.80e-45 | 162 |
| Msa0511670 | AT1G44170.3 | 30.194 | 361 | 237 | 7 | 20 | 375 | 28 | 378 | 1.83e-42 | 154 |
| Msa0511670 | AT1G44170.1 | 30.194 | 361 | 237 | 7 | 20 | 375 | 91 | 441 | 6.83e-42 | 154 |
| Msa0511670 | AT1G44170.2 | 30.194 | 361 | 237 | 7 | 20 | 375 | 91 | 441 | 6.83e-42 | 154 |
| Msa0511670 | AT2G14170.2 | 29.243 | 383 | 240 | 8 | 9 | 384 | 123 | 481 | 6.35e-40 | 149 |
| Msa0511670 | AT2G14170.1 | 29.243 | 383 | 240 | 8 | 9 | 384 | 232 | 590 | 5.11e-39 | 147 |
| Msa0511670 | AT2G14170.3 | 30.422 | 332 | 212 | 4 | 9 | 338 | 232 | 546 | 4.42e-38 | 145 |
| Msa0511670 | AT4G36250.1 | 30.172 | 348 | 229 | 9 | 34 | 375 | 101 | 440 | 4.25e-36 | 138 |
| Msa0511670 | AT4G34240.3 | 28.363 | 342 | 234 | 6 | 37 | 375 | 29 | 362 | 7.58e-29 | 116 |
| Msa0511670 | AT4G34240.4 | 28.363 | 342 | 234 | 6 | 37 | 375 | 156 | 489 | 2.99e-28 | 116 |
| Msa0511670 | AT4G34240.1 | 28.363 | 342 | 234 | 6 | 37 | 375 | 171 | 504 | 3.27e-28 | 116 |
| Msa0511670 | AT4G34240.2 | 33.000 | 200 | 129 | 4 | 37 | 235 | 171 | 366 | 2.31e-16 | 80.5 |
Find 112 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAATATTGTCACTGGATT+AGG | 0.235962 | 3_4:-61300382 | Msa0511670:CDS |
| ATTATCTAGGGCGGTGTTAT+TGG | 0.270755 | 3_4:-61300839 | Msa0511670:intron |
| CTAAACTCTGGCATGGAATA+TGG | 0.271148 | 3_4:-61297768 | Msa0511670:three_prime_UTR |
| GGCATTAAACGTAGTGGTTT+TGG | 0.273926 | 3_4:-61298027 | Msa0511670:CDS |
| TTTCTGCAGGTTCTTCAATC+TGG | 0.307088 | 3_4:-61298102 | Msa0511670:intron |
| TGACTACCTCGATGCAAATT+TGG | 0.321570 | 3_4:-61298447 | Msa0511670:CDS |
| ATATTTCACAGCTATGGCTT+GGG | 0.322049 | 3_4:-61298259 | Msa0511670:intron |
| CCATGAAGCTGGCGCTTCTT+TGG | 0.329631 | 3_4:-61300359 | Msa0511670:CDS |
| ATTTGATAGATTTCCTTTAC+TGG | 0.341689 | 3_4:-61300188 | Msa0511670:intron |
| TGTGAGAAAGGAAAAGAAAA+AGG | 0.342969 | 3_4:+61301025 | None:intergenic |
| CCAAAGAAGCGCCAGCTTCA+TGG | 0.354485 | 3_4:+61300359 | None:intergenic |
| GCACAACCAGCAGCCAGAGC+TGG | 0.367552 | 3_4:+61300573 | None:intergenic |
| TTCCAAATTTAGGACTTGTT+TGG | 0.368861 | 3_4:-61300449 | Msa0511670:intron |
| TTTACTGGTAGCTCTGCAAC+TGG | 0.370902 | 3_4:-61300173 | Msa0511670:CDS |
| ACCCCTTGGAAGAAGGTTGC+AGG | 0.377207 | 3_4:-61299319 | Msa0511670:CDS |
| ACCTGTGCTTCACTGACAAT+AGG | 0.380793 | 3_4:+61299290 | None:intergenic |
| ATCTCATCCTGATGTAGATA+TGG | 0.386512 | 3_4:-61300335 | Msa0511670:intron |
| AGTTATTATAATCTTATGTT+GGG | 0.394667 | 3_4:-61297726 | Msa0511670:three_prime_UTR |
| AATATTGAAGCCGTCTGAAT+TGG | 0.395523 | 3_4:-61300547 | Msa0511670:CDS |
| TTGTGAATAGACTTGTGAAA+TGG | 0.395872 | 3_4:-61299364 | Msa0511670:CDS |
| AAGATGCGAGCGCCTATCTA+AGG | 0.397430 | 3_4:-61298209 | Msa0511670:intron |
| TTCTTCAATCTGGAATTGTA+TGG | 0.398500 | 3_4:-61298092 | Msa0511670:CDS |
| GTTGCTGAATGGACCATCTA+TGG | 0.408946 | 3_4:-61299677 | Msa0511670:CDS |
| TTAAACTTACATGCACAATA+AGG | 0.409766 | 3_4:+61299612 | None:intergenic |
| TGAGGATGTTGACCTTGATA+AGG | 0.409876 | 3_4:-61299929 | Msa0511670:CDS |
| ATTAATGCAACAACACCAAT+AGG | 0.410007 | 3_4:+61300713 | None:intergenic |
| GGATTAGTCTCACCTTAGAT+AGG | 0.410819 | 3_4:+61298197 | None:intergenic |
| TTTAGGACTTGTTTGGAGTT+AGG | 0.415116 | 3_4:-61300442 | Msa0511670:intron |
| TATGGCTGCTTCTATACTAA+TGG | 0.415426 | 3_4:-61299659 | Msa0511670:CDS |
| ATTCTGTTATAACAGAGATA+TGG | 0.423370 | 3_4:+61297689 | None:intergenic |
| ATCATTAAACAGTTGCTGAA+TGG | 0.424845 | 3_4:-61299688 | Msa0511670:intron |
| TTCTCAGTTATCTGTGAGAA+AGG | 0.426630 | 3_4:+61301013 | None:intergenic |
| GTCACATCTGTTATGATGGT+TGG | 0.427065 | 3_4:+61298466 | None:intergenic |
| ATCAACTCACTGGGTGTCAT+TGG | 0.429178 | 3_4:+61298354 | None:intergenic |
| GTTAACTACGACATCTTTGA+AGG | 0.434506 | 3_4:+61297818 | None:intergenic |
| TGCTCCTATATCTCTTCCTA+TGG | 0.434811 | 3_4:-61300765 | Msa0511670:CDS |
| TTGGAAGAAGGTTGCAGGCT+AGG | 0.437190 | 3_4:-61299314 | Msa0511670:CDS |
| GATATTTCACAGCTATGGCT+TGG | 0.445240 | 3_4:-61298260 | Msa0511670:intron |
| TGGATCAATTGTGCTCAAAC+AGG | 0.445550 | 3_4:-61298072 | Msa0511670:CDS |
| AAGTTATTATAATCTTATGT+TGG | 0.449400 | 3_4:-61297727 | Msa0511670:three_prime_UTR |
| GGTGTCTTAAATATTGTCAC+TGG | 0.453326 | 3_4:-61300388 | Msa0511670:CDS |
| AAGGAAAATTGCTCCAGCTC+TGG | 0.456691 | 3_4:-61300586 | Msa0511670:CDS |
| ATTTCTGACCCCTTGGAAGA+AGG | 0.465007 | 3_4:-61299326 | Msa0511670:CDS |
| GTATCCATAGGAAGAGATAT+AGG | 0.466773 | 3_4:+61300761 | None:intergenic |
| ATTGCTCCAGCTCTGGCTGC+TGG | 0.470070 | 3_4:-61300579 | Msa0511670:CDS |
| GAGGATGTTGACCTTGATAA+GGG | 0.470972 | 3_4:-61299928 | Msa0511670:intron |
| AGAGAAGTTGGCCTTCCTTC+CGG | 0.471083 | 3_4:-61300409 | Msa0511670:CDS |
| AGGCTTCATTCGAGCTCCAT+GGG | 0.473123 | 3_4:-61298052 | Msa0511670:CDS |
| AGTATAGAAGCAGCCATAGA+TGG | 0.473389 | 3_4:+61299664 | None:intergenic |
| TAGCCTGCAACCTTCTTCCA+AGG | 0.480512 | 3_4:+61299316 | None:intergenic |
| CCCTATTGTCAGTGAAGCAC+AGG | 0.482906 | 3_4:-61299291 | Msa0511670:intron |
| CATCAAAATTTCTGACCCCT+TGG | 0.485133 | 3_4:-61299333 | Msa0511670:CDS |
| CCTGTGCTTCACTGACAATA+GGG | 0.485460 | 3_4:+61299291 | None:intergenic |
| TGTGAATAGACTTGTGAAAT+GGG | 0.492497 | 3_4:-61299363 | Msa0511670:CDS |
| TGCTGGACTTGCTGAAGGGT+TGG | 0.492687 | 3_4:-61300801 | Msa0511670:CDS |
| AGTTGCAGAGCTACCAGTAA+AGG | 0.496448 | 3_4:+61300175 | None:intergenic |
| CTCTGGCATGGAATATGGTT+TGG | 0.502582 | 3_4:-61297763 | Msa0511670:three_prime_UTR |
| TCGATGGCAGAATTTAAAGA+AGG | 0.503397 | 3_4:-61298503 | Msa0511670:intron |
| AAAACCACTGGATGAAGCAC+TGG | 0.505361 | 3_4:-61300951 | Msa0511670:five_prime_UTR |
| TTTCGAACCATATCTACATC+AGG | 0.510557 | 3_4:+61300328 | None:intergenic |
| CAGGCTTCATTCGAGCTCCA+TGG | 0.514282 | 3_4:-61298053 | Msa0511670:CDS |
| TATGTTCTCAAGGAGCCTAT+TGG | 0.514657 | 3_4:-61300728 | Msa0511670:CDS |
| TAGGAACTATCCTCTCTCAA+TGG | 0.514791 | 3_4:-61300613 | Msa0511670:CDS |
| GCATGGAATATGGTTTGGTG+TGG | 0.514909 | 3_4:-61297758 | Msa0511670:three_prime_UTR |
| AACATAAGATTATAATAACT+TGG | 0.519839 | 3_4:+61297729 | None:intergenic |
| GTACATATCTGATGAGCAGT+GGG | 0.523721 | 3_4:-61297855 | Msa0511670:CDS |
| AAGTCTATTCACAAATTCTA+CGG | 0.524261 | 3_4:+61299373 | None:intergenic |
| TGAGTGTGAAGCAAGTTACT+AGG | 0.525857 | 3_4:-61297877 | Msa0511670:CDS |
| TTGGTCGCGAATTAGGAGAA+TGG | 0.527821 | 3_4:-61298008 | Msa0511670:intron |
| AGCCTGCAACCTTCTTCCAA+GGG | 0.527999 | 3_4:+61299317 | None:intergenic |
| GGCGAAATATGCAGAGAAGT+TGG | 0.528758 | 3_4:-61300421 | Msa0511670:CDS |
| CTTCAAAAGCTATGTTCTCA+AGG | 0.533468 | 3_4:-61300738 | Msa0511670:CDS |
| GGTAGTCACATCTGTTATGA+TGG | 0.533599 | 3_4:+61298462 | None:intergenic |
| TATTTCACAGCTATGGCTTG+GGG | 0.535756 | 3_4:-61298258 | Msa0511670:intron |
| AGGCAAACCAACCCTTATCA+AGG | 0.536726 | 3_4:+61299917 | None:intergenic |
| AGCTGCAGCACAACTAATCA+AGG | 0.537292 | 3_4:-61300135 | Msa0511670:intron |
| TATCTGATGAGCAGTGGGGC+TGG | 0.538103 | 3_4:-61297850 | Msa0511670:CDS |
| CGATGGCAGAATTTAAAGAA+GGG | 0.538375 | 3_4:-61298502 | Msa0511670:intron |
| TTGACATCTAAACTCTGGCA+TGG | 0.540317 | 3_4:-61297775 | Msa0511670:three_prime_UTR |
| TTGTTGCATTAATTACTCCA+TGG | 0.543900 | 3_4:-61300703 | Msa0511670:intron |
| TACTATGCTGGACTTGCTGA+AGG | 0.544071 | 3_4:-61300806 | Msa0511670:CDS |
| AAACTTGAATCAATTGATTG+TGG | 0.547623 | 3_4:-61300974 | Msa0511670:five_prime_UTR |
| AATTGATTGTGGAAAACCAC+TGG | 0.554464 | 3_4:-61300963 | Msa0511670:five_prime_UTR |
| ACTGGATTAGGCCATGAAGC+TGG | 0.561019 | 3_4:-61300370 | Msa0511670:CDS |
| ATCTCAACGGCTAAGAGTGA+AGG | 0.561409 | 3_4:-61298633 | Msa0511670:CDS |
| ATCCTCTCTCAATGGCGGCA+AGG | 0.570320 | 3_4:-61300605 | Msa0511670:CDS |
| CATGGAATATGGTTTGGTGT+GGG | 0.570781 | 3_4:-61297757 | Msa0511670:three_prime_UTR |
| TATTTAAGACACCGGAAGGA+AGG | 0.571761 | 3_4:+61300398 | None:intergenic |
| TTCCTTGCCGCCATTGAGAG+AGG | 0.573066 | 3_4:+61300603 | None:intergenic |
| TAAATTTGACATCTAAACTC+TGG | 0.574840 | 3_4:-61297780 | Msa0511670:three_prime_UTR |
| AAACCACTGGATGAAGCACT+GGG | 0.579432 | 3_4:-61300950 | Msa0511670:five_prime_UTR |
| GATGCAAATTTGGAGAGAAG+AGG | 0.583417 | 3_4:-61298437 | Msa0511670:CDS |
| TAACTACGACATCTTTGAAG+GGG | 0.595231 | 3_4:+61297820 | None:intergenic |
| TTAACTACGACATCTTTGAA+GGG | 0.596180 | 3_4:+61297819 | None:intergenic |
| TTCATTCGAGCTCCATGGGG+AGG | 0.606577 | 3_4:-61298048 | Msa0511670:CDS |
| ACAATATTTAAGACACCGGA+AGG | 0.610299 | 3_4:+61300394 | None:intergenic |
| TTACTGGTAGCTCTGCAACT+GGG | 0.611165 | 3_4:-61300172 | Msa0511670:CDS |
| TACACAGATGCCAATTCAGA+CGG | 0.614415 | 3_4:+61300537 | None:intergenic |
| CTACGTTTAATGCCTCCCCA+TGG | 0.624319 | 3_4:+61298036 | None:intergenic |
| GGTACATATCTGATGAGCAG+TGG | 0.625206 | 3_4:-61297856 | Msa0511670:CDS |
| AACTGGTGGATGTCGACCAG+AGG | 0.630389 | 3_4:-61298598 | Msa0511670:intron |
| ACCACTGGATGAAGCACTGG+GGG | 0.636518 | 3_4:-61300948 | Msa0511670:five_prime_UTR |
| TGGGGAGGCATTAAACGTAG+TGG | 0.638861 | 3_4:-61298033 | Msa0511670:CDS |
| AGTGACAATATTTAAGACAC+CGG | 0.649982 | 3_4:+61300390 | None:intergenic |
| GCCTGCAACCTTCTTCCAAG+GGG | 0.657132 | 3_4:+61299318 | None:intergenic |
| TTCTCTCCAAATTTGCATCG+AGG | 0.657536 | 3_4:+61298441 | None:intergenic |
| ACTATGCTGGACTTGCTGAA+GGG | 0.667267 | 3_4:-61300805 | Msa0511670:CDS |
| GAACTATCCTCTCTCAATGG+CGG | 0.667430 | 3_4:-61300610 | Msa0511670:CDS |
| GGCTTCATTCGAGCTCCATG+GGG | 0.715379 | 3_4:-61298051 | Msa0511670:CDS |
| TGTGAAAACATTTAGCACTG+AGG | 0.731236 | 3_4:-61298395 | Msa0511670:CDS |
| AACCACTGGATGAAGCACTG+GGG | 0.731676 | 3_4:-61300949 | Msa0511670:five_prime_UTR |
| TACATATCTGATGAGCAGTG+GGG | 0.756462 | 3_4:-61297854 | Msa0511670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTAATTGTTTTTATATTTT+AGG | - | chr3_4:61298075-61298094 | Msa0511670:CDS | 10.0% |
| !!! | GTTTTTATATGAAAATATAT+TGG | + | chr3_4:61300534-61300553 | None:intergenic | 10.0% |
| !! | TATAAAAACAATTACTGAAA+AGG | + | chr3_4:61298071-61298090 | None:intergenic | 15.0% |
| !!! | CAAATTATTTTTATCATTAG+TGG | - | chr3_4:61298405-61298424 | Msa0511670:CDS | 15.0% |
| !!! | ATTATAGTTGAGTAAATTTT+TGG | - | chr3_4:61298926-61298945 | Msa0511670:intron | 15.0% |
| !! | AACATAAGATTATAATAACT+TGG | + | chr3_4:61300981-61301000 | None:intergenic | 15.0% |
| !! | AAGTTATTATAATCTTATGT+TGG | - | chr3_4:61300980-61300999 | Msa0511670:five_prime_UTR | 15.0% |
| !! | AGTTATTATAATCTTATGTT+GGG | - | chr3_4:61300981-61301000 | Msa0511670:five_prime_UTR | 15.0% |
| !!! | TTCTTTTTGTTTCCAAATTT+AGG | - | chr3_4:61298248-61298267 | Msa0511670:CDS | 20.0% |
| !! | ATTTGATATTGTTGTGAATT+CGG | + | chr3_4:61298694-61298713 | None:intergenic | 20.0% |
| !! | CAATGCATGAAATTAAAATA+TGG | + | chr3_4:61298883-61298902 | None:intergenic | 20.0% |
| !!! | TATTTTAATTTCATGCATTG+TGG | - | chr3_4:61298883-61298902 | Msa0511670:intron | 20.0% |
| !!! | TCTAATTTTTTCAGCATAAA+TGG | - | chr3_4:61299192-61299211 | Msa0511670:intron | 20.0% |
| !!! | CTAATTTTTTCAGCATAAAT+GGG | - | chr3_4:61299193-61299212 | Msa0511670:intron | 20.0% |
| !!! | AGTATTGAATTTTATCTCAA+CGG | - | chr3_4:61300061-61300080 | Msa0511670:intron | 20.0% |
| !!! | TTGTAGATTTTAGAAAACAA+GGG | + | chr3_4:61300730-61300749 | None:intergenic | 20.0% |
| !!! | TTTGTAGATTTTAGAAAACA+AGG | + | chr3_4:61300731-61300750 | None:intergenic | 20.0% |
| ! | AAACTTGAATCAATTGATTG+TGG | - | chr3_4:61297733-61297752 | Msa0511670:three_prime_UTR | 25.0% |
| ! | AAAAAACAGATATCATACCA+TGG | + | chr3_4:61298024-61298043 | None:intergenic | 25.0% |
| ! | TTAAATATTGTCACTGGATT+AGG | - | chr3_4:61298325-61298344 | Msa0511670:intron | 25.0% |
| ! | TTAGTGGAATCAAAACTATA+AGG | - | chr3_4:61298421-61298440 | Msa0511670:CDS | 25.0% |
| !!! | ATTTTAGCAAACTCAAAAGA+TGG | + | chr3_4:61298479-61298498 | None:intergenic | 25.0% |
| ! | ATTTGATAGATTTCCTTTAC+TGG | - | chr3_4:61298519-61298538 | Msa0511670:intron | 25.0% |
| ! | ACTCAACTATAATGTATGAT+GGG | + | chr3_4:61298919-61298938 | None:intergenic | 25.0% |
| ! | TACTCAACTATAATGTATGA+TGG | + | chr3_4:61298920-61298939 | None:intergenic | 25.0% |
| !! | AATATTTTCGTTCATGCAAT+AGG | + | chr3_4:61298961-61298980 | None:intergenic | 25.0% |
| !! | CGAAAATATTTTCCCATATA+CGG | - | chr3_4:61298971-61298990 | Msa0511670:intron | 25.0% |
| ! | ATAAAACATCAACCGTATAT+GGG | + | chr3_4:61298986-61299005 | None:intergenic | 25.0% |
| ! | AATAAAACATCAACCGTATA+TGG | + | chr3_4:61298987-61299006 | None:intergenic | 25.0% |
| ! | TTAAACTTACATGCACAATA+AGG | + | chr3_4:61299098-61299117 | None:intergenic | 25.0% |
| ! | AACATGTATTATTGATGGAA+TGG | + | chr3_4:61299139-61299158 | None:intergenic | 25.0% |
| ! | GCATAAACATGTATTATTGA+TGG | + | chr3_4:61299144-61299163 | None:intergenic | 25.0% |
| !!! | AATTTTTTATCCAAAGCCAA+CGG | + | chr3_4:61299275-61299294 | None:intergenic | 25.0% |
| !! | GATCAAGTAAAACACTTTTA+TGG | - | chr3_4:61299295-61299314 | Msa0511670:CDS | 25.0% |
| !! | TAAAACACTTTTATGGTTTC+AGG | - | chr3_4:61299302-61299321 | Msa0511670:CDS | 25.0% |
| ! | AAGTCTATTCACAAATTCTA+CGG | + | chr3_4:61299337-61299356 | None:intergenic | 25.0% |
| !!! | GTCAGAAATTTTGATGTTTT+TGG | + | chr3_4:61299370-61299389 | None:intergenic | 25.0% |
| !! | TATGTTTACATTTTGGACAA+TGG | + | chr3_4:61299707-61299726 | None:intergenic | 25.0% |
| ! | TTGTCCAAAATGTAAACATA+CGG | - | chr3_4:61299707-61299726 | Msa0511670:intron | 25.0% |
| ! | TAATATGTCTTCAAATTCGA+TGG | - | chr3_4:61300188-61300207 | Msa0511670:intron | 25.0% |
| ! | TTCGATTATTACTAACTGAA+TGG | - | chr3_4:61300564-61300583 | Msa0511670:CDS | 25.0% |
| !!! | ACTTTATATTTGTTTTCTGC+AGG | - | chr3_4:61300592-61300611 | Msa0511670:CDS | 25.0% |
| !!! | TTATTGTTGTTTTTCCATTC+AGG | - | chr3_4:61300791-61300810 | Msa0511670:CDS | 25.0% |
| !!! | TATTGTTGTTTTTCCATTCA+GGG | - | chr3_4:61300792-61300811 | Msa0511670:CDS | 25.0% |
| ! | TAAATTTGACATCTAAACTC+TGG | - | chr3_4:61300927-61300946 | Msa0511670:intron | 25.0% |
| ! | ATTCTGTTATAACAGAGATA+TGG | + | chr3_4:61301021-61301040 | None:intergenic | 25.0% |
| AGGAAAAGAAAAAGGATAAC+TGG | + | chr3_4:61297677-61297696 | None:intergenic | 30.0% | |
| TGTGAGAAAGGAAAAGAAAA+AGG | + | chr3_4:61297685-61297704 | None:intergenic | 30.0% | |
| ACTGAGAAAAAGAATGAACT+AGG | - | chr3_4:61297709-61297728 | Msa0511670:three_prime_UTR | 30.0% | |
| !!! | TGTTCCTTTTTTTGCTTACT+TGG | - | chr3_4:61297826-61297845 | Msa0511670:CDS | 30.0% |
| !!! | GTTCCTTTTTTTGCTTACTT+GGG | - | chr3_4:61297827-61297846 | Msa0511670:CDS | 30.0% |
| ! | TTGTGGTTTGATGATTATCT+AGG | - | chr3_4:61297855-61297874 | Msa0511670:CDS | 30.0% |
| ! | TGTGGTTTGATGATTATCTA+GGG | - | chr3_4:61297856-61297875 | Msa0511670:CDS | 30.0% |
| ATTAATGCAACAACACCAAT+AGG | + | chr3_4:61297997-61298016 | None:intergenic | 30.0% | |
| TTGTTGCATTAATTACTCCA+TGG | - | chr3_4:61298004-61298023 | Msa0511670:intron | 30.0% | |
| ! | TTCCAAATTTAGGACTTGTT+TGG | - | chr3_4:61298258-61298277 | Msa0511670:intron | 30.0% |
| ! | AGTGACAATATTTAAGACAC+CGG | + | chr3_4:61298320-61298339 | None:intergenic | 30.0% |
| ACATGCGAAACAAATAACAA+TGG | + | chr3_4:61298646-61298665 | None:intergenic | 30.0% | |
| CATCCTCAAAAACAACTATT+GGG | + | chr3_4:61298766-61298785 | None:intergenic | 30.0% | |
| ACATCCTCAAAAACAACTAT+TGG | + | chr3_4:61298767-61298786 | None:intergenic | 30.0% | |
| CAAACTAGACATATTTGAGA+AGG | + | chr3_4:61298813-61298832 | None:intergenic | 30.0% | |
| ! | TCTCAAATATGTCTAGTTTG+TGG | - | chr3_4:61298813-61298832 | Msa0511670:intron | 30.0% |
| ! | ATCACTTATCGTTTGCATTT+TGG | - | chr3_4:61298837-61298856 | Msa0511670:intron | 30.0% |
| ATTCAGCAACTGTTTAATGA+TGG | + | chr3_4:61299020-61299039 | None:intergenic | 30.0% | |
| ATCATTAAACAGTTGCTGAA+TGG | - | chr3_4:61299019-61299038 | Msa0511670:intron | 30.0% | |
| TGTTAGATTTCCTTACATTG+TGG | - | chr3_4:61299218-61299237 | Msa0511670:intron | 30.0% | |
| TTGTGAATAGACTTGTGAAA+TGG | - | chr3_4:61299343-61299362 | Msa0511670:CDS | 30.0% | |
| TGTGAATAGACTTGTGAAAT+GGG | - | chr3_4:61299344-61299363 | Msa0511670:CDS | 30.0% | |
| !!! | GTGGCTTTAGACATAATTTT+AGG | - | chr3_4:61299469-61299488 | Msa0511670:intron | 30.0% |
| ACATTTCTACTTGCAAAAAG+AGG | - | chr3_4:61299569-61299588 | Msa0511670:intron | 30.0% | |
| CATTTCTACTTGCAAAAAGA+GGG | - | chr3_4:61299570-61299589 | Msa0511670:intron | 30.0% | |
| AACAAACACAAGACAAATAC+AGG | + | chr3_4:61299674-61299693 | None:intergenic | 30.0% | |
| ! | ACTACCGTATGTTTACATTT+TGG | + | chr3_4:61299714-61299733 | None:intergenic | 30.0% |
| !! | ATTTAGCTTTCAACCCATTT+GGG | - | chr3_4:61299804-61299823 | Msa0511670:intron | 30.0% |
| TCTCTCATGTCAATTTAAGT+GGG | - | chr3_4:61299892-61299911 | Msa0511670:intron | 30.0% | |
| !! | ACATGATTTAGCTTTCTATC+TGG | - | chr3_4:61299938-61299957 | Msa0511670:CDS | 30.0% |
| !! | CATGATTTAGCTTTCTATCT+GGG | - | chr3_4:61299939-61299958 | Msa0511670:CDS | 30.0% |
| AACTTGATATTTCACAGCTA+TGG | - | chr3_4:61300442-61300461 | Msa0511670:intron | 30.0% | |
| ! | TTCTTCAATCTGGAATTGTA+TGG | - | chr3_4:61300615-61300634 | Msa0511670:intron | 30.0% |
| AAATTCAGACTCTAATTCTC+AGG | + | chr3_4:61300771-61300790 | None:intergenic | 30.0% | |
| !!! | ATTGTTGTTTTTCCATTCAG+GGG | - | chr3_4:61300793-61300812 | Msa0511670:CDS | 30.0% |
| TTAACTACGACATCTTTGAA+GGG | + | chr3_4:61300891-61300910 | None:intergenic | 30.0% | |
| AAGAAAAAGGATAACTGGTC+AGG | + | chr3_4:61297672-61297691 | None:intergenic | 35.0% | |
| TTCTCAGTTATCTGTGAGAA+AGG | + | chr3_4:61297697-61297716 | None:intergenic | 35.0% | |
| AATTGATTGTGGAAAACCAC+TGG | - | chr3_4:61297744-61297763 | Msa0511670:three_prime_UTR | 35.0% | |
| GATAATCATCAAACCACAAC+AGG | + | chr3_4:61297854-61297873 | None:intergenic | 35.0% | |
| GTATCCATAGGAAGAGATAT+AGG | + | chr3_4:61297949-61297968 | None:intergenic | 35.0% | |
| !!! | TAGCTTTTGAAGGTATCCAT+AGG | + | chr3_4:61297961-61297980 | None:intergenic | 35.0% |
| ! | CTTGAGAACATAGCTTTTGA+AGG | + | chr3_4:61297971-61297990 | None:intergenic | 35.0% |
| CTTCAAAAGCTATGTTCTCA+AGG | - | chr3_4:61297969-61297988 | Msa0511670:intron | 35.0% | |
| AATATTGAAGCCGTCTGAAT+TGG | - | chr3_4:61298160-61298179 | Msa0511670:intron | 35.0% | |
| CTCCAAACAAGTCCTAAATT+TGG | + | chr3_4:61298263-61298282 | None:intergenic | 35.0% | |
| ! | TTTAGGACTTGTTTGGAGTT+AGG | - | chr3_4:61298265-61298284 | Msa0511670:intron | 35.0% |
| ! | ACAATATTTAAGACACCGGA+AGG | + | chr3_4:61298316-61298335 | None:intergenic | 35.0% |
| GGTGTCTTAAATATTGTCAC+TGG | - | chr3_4:61298319-61298338 | Msa0511670:intron | 35.0% | |
| ATCTCATCCTGATGTAGATA+TGG | - | chr3_4:61298372-61298391 | Msa0511670:CDS | 35.0% | |
| TTTCGAACCATATCTACATC+AGG | + | chr3_4:61298382-61298401 | None:intergenic | 35.0% | |
| ! | TTCGTTCATGCAATAGGTTT+TGG | + | chr3_4:61298955-61298974 | None:intergenic | 35.0% |
| TATGGCTGCTTCTATACTAA+TGG | - | chr3_4:61299048-61299067 | Msa0511670:intron | 35.0% | |
| !! | TTTGCTGCTTATCACTTTTG+TGG | - | chr3_4:61299450-61299469 | Msa0511670:intron | 35.0% |
| TTTGCCGTTGATACATAATC+CGG | - | chr3_4:61299504-61299523 | Msa0511670:intron | 35.0% | |
| TTTCCCGGATTATGTATCAA+CGG | + | chr3_4:61299511-61299530 | None:intergenic | 35.0% | |
| ! | AACTAAAGCAGTTGATTTCC+CGG | + | chr3_4:61299526-61299545 | None:intergenic | 35.0% |
| !! | CATGTTAGCAGTTGATTTTC+CGG | + | chr3_4:61299646-61299665 | None:intergenic | 35.0% |
| !! | GATTTAGCTTTCAACCCATT+TGG | - | chr3_4:61299803-61299822 | Msa0511670:intron | 35.0% |
| CTCTCTCATGTCAATTTAAG+TGG | - | chr3_4:61299891-61299910 | Msa0511670:intron | 35.0% | |
| !! | GAAGGTGCAACAATTTTAAC+TGG | - | chr3_4:61300092-61300111 | Msa0511670:intron | 35.0% |
| AAACAGATACACATGCTCAA+GGG | + | chr3_4:61300147-61300166 | None:intergenic | 35.0% | |
| AAAACAGATACACATGCTCA+AGG | + | chr3_4:61300148-61300167 | None:intergenic | 35.0% | |
| TCGATGGCAGAATTTAAAGA+AGG | - | chr3_4:61300204-61300223 | Msa0511670:intron | 35.0% | |
| CGATGGCAGAATTTAAAGAA+GGG | - | chr3_4:61300205-61300224 | Msa0511670:intron | 35.0% | |
| ! | ATTTGGAGAGAAGAGGTTTT+TGG | - | chr3_4:61300277-61300296 | Msa0511670:intron | 35.0% |
| !! | AATGTTTTCACAGAGAGTAC+AGG | + | chr3_4:61300304-61300323 | None:intergenic | 35.0% |
| TGTGAAAACATTTAGCACTG+AGG | - | chr3_4:61300312-61300331 | Msa0511670:intron | 35.0% | |
| !!! | ACCAGTTTTTTCTTGACTTG+TGG | - | chr3_4:61300401-61300420 | Msa0511670:CDS | 35.0% |
| TCCACAAGTCAAGAAAAAAC+TGG | + | chr3_4:61300405-61300424 | None:intergenic | 35.0% | |
| ATATTTCACAGCTATGGCTT+GGG | - | chr3_4:61300448-61300467 | Msa0511670:intron | 35.0% | |
| TAATTATCAAGTCCCCTGAA+TGG | + | chr3_4:61300808-61300827 | None:intergenic | 35.0% | |
| ! | TAACTACGACATCTTTGAAG+GGG | + | chr3_4:61300890-61300909 | None:intergenic | 35.0% |
| GTTAACTACGACATCTTTGA+AGG | + | chr3_4:61300892-61300911 | None:intergenic | 35.0% | |
| GGTCCCAAGTAAGCAAAAAA+AGG | + | chr3_4:61297833-61297852 | None:intergenic | 40.0% | |
| ! | GGTTTGATGATTATCTAGGG+CGG | - | chr3_4:61297859-61297878 | Msa0511670:CDS | 40.0% |
| !! | ATTATCTAGGGCGGTGTTAT+TGG | - | chr3_4:61297868-61297887 | Msa0511670:CDS | 40.0% |
| !!! | GGTTGTTTTGAGTACTATGC+TGG | - | chr3_4:61297889-61297908 | Msa0511670:CDS | 40.0% |
| TGCTCCTATATCTCTTCCTA+TGG | - | chr3_4:61297942-61297961 | Msa0511670:intron | 40.0% | |
| TATGTTCTCAAGGAGCCTAT+TGG | - | chr3_4:61297979-61297998 | Msa0511670:intron | 40.0% | |
| TAGGAACTATCCTCTCTCAA+TGG | - | chr3_4:61298094-61298113 | Msa0511670:CDS | 40.0% | |
| TACACAGATGCCAATTCAGA+CGG | + | chr3_4:61298173-61298192 | None:intergenic | 40.0% | |
| ! | TATTTAAGACACCGGAAGGA+AGG | + | chr3_4:61298312-61298331 | None:intergenic | 40.0% |
| !!! | GAGCCCAATAGTTGTTTTTG+AGG | - | chr3_4:61298760-61298779 | Msa0511670:intron | 40.0% |
| TGAGGATGTTGACCTTGATA+AGG | - | chr3_4:61298778-61298797 | Msa0511670:intron | 40.0% | |
| GAGGATGTTGACCTTGATAA+GGG | - | chr3_4:61298779-61298798 | Msa0511670:intron | 40.0% | |
| ATGTTGACCTTGATAAGGGT+TGG | - | chr3_4:61298783-61298802 | Msa0511670:intron | 40.0% | |
| AGTATAGAAGCAGCCATAGA+TGG | + | chr3_4:61299046-61299065 | None:intergenic | 40.0% | |
| CAAAACTCTGCCACAATGTA+AGG | + | chr3_4:61299231-61299250 | None:intergenic | 40.0% | |
| CATCAAAATTTCTGACCCCT+TGG | - | chr3_4:61299374-61299393 | Msa0511670:CDS | 40.0% | |
| TTGCCGTTGATACATAATCC+GGG | - | chr3_4:61299505-61299524 | Msa0511670:intron | 40.0% | |
| CGGAAAATCAACTGCTAACA+TGG | - | chr3_4:61299644-61299663 | Msa0511670:CDS | 40.0% | |
| TCAAAGTCGAATGCATTCTG+CGG | - | chr3_4:61299753-61299772 | Msa0511670:intron | 40.0% | |
| !!! | GGTGCAACAATTTTAACTGG+TGG | - | chr3_4:61300095-61300114 | Msa0511670:intron | 40.0% |
| AGGGTATATACTCATACCTC+TGG | + | chr3_4:61300128-61300147 | None:intergenic | 40.0% | |
| GTCACATCTGTTATGATGGT+TGG | + | chr3_4:61300244-61300263 | None:intergenic | 40.0% | |
| GGTAGTCACATCTGTTATGA+TGG | + | chr3_4:61300248-61300267 | None:intergenic | 40.0% | |
| TGACTACCTCGATGCAAATT+TGG | - | chr3_4:61300260-61300279 | Msa0511670:intron | 40.0% | |
| TTCTCTCCAAATTTGCATCG+AGG | + | chr3_4:61300269-61300288 | None:intergenic | 40.0% | |
| GATGCAAATTTGGAGAGAAG+AGG | - | chr3_4:61300270-61300289 | Msa0511670:intron | 40.0% | |
| GATCAGTTCATCAACTCACT+GGG | + | chr3_4:61300365-61300384 | None:intergenic | 40.0% | |
| TGATCAGTTCATCAACTCAC+TGG | + | chr3_4:61300366-61300385 | None:intergenic | 40.0% | |
| GATATTTCACAGCTATGGCT+TGG | - | chr3_4:61300447-61300466 | Msa0511670:intron | 40.0% | |
| TATTTCACAGCTATGGCTTG+GGG | - | chr3_4:61300449-61300468 | Msa0511670:intron | 40.0% | |
| !! | GGATTAGTCTCACCTTAGAT+AGG | + | chr3_4:61300513-61300532 | None:intergenic | 40.0% |
| TTTCTGCAGGTTCTTCAATC+TGG | - | chr3_4:61300605-61300624 | Msa0511670:CDS | 40.0% | |
| TGGATCAATTGTGCTCAAAC+AGG | - | chr3_4:61300635-61300654 | Msa0511670:intron | 40.0% | |
| ! | GGCATTAAACGTAGTGGTTT+TGG | - | chr3_4:61300680-61300699 | Msa0511670:intron | 40.0% |
| TGAGTGTGAAGCAAGTTACT+AGG | - | chr3_4:61300830-61300849 | Msa0511670:CDS | 40.0% | |
| GTACATATCTGATGAGCAGT+GGG | - | chr3_4:61300852-61300871 | Msa0511670:intron | 40.0% | |
| TACATATCTGATGAGCAGTG+GGG | - | chr3_4:61300853-61300872 | Msa0511670:intron | 40.0% | |
| TTGACATCTAAACTCTGGCA+TGG | - | chr3_4:61300932-61300951 | Msa0511670:intron | 40.0% | |
| CTAAACTCTGGCATGGAATA+TGG | - | chr3_4:61300939-61300958 | Msa0511670:intron | 40.0% | |
| !! | CATGGAATATGGTTTGGTGT+GGG | - | chr3_4:61300950-61300969 | Msa0511670:five_prime_UTR | 40.0% |
| AAAACCACTGGATGAAGCAC+TGG | - | chr3_4:61297756-61297775 | Msa0511670:three_prime_UTR | 45.0% | |
| ! | AAACCACTGGATGAAGCACT+GGG | - | chr3_4:61297757-61297776 | Msa0511670:three_prime_UTR | 45.0% |
| !! | TACTATGCTGGACTTGCTGA+AGG | - | chr3_4:61297901-61297920 | Msa0511670:intron | 45.0% |
| !! | ACTATGCTGGACTTGCTGAA+GGG | - | chr3_4:61297902-61297921 | Msa0511670:intron | 45.0% |
| GAACTATCCTCTCTCAATGG+CGG | - | chr3_4:61298097-61298116 | Msa0511670:intron | 45.0% | |
| AAGGAAAATTGCTCCAGCTC+TGG | - | chr3_4:61298121-61298140 | Msa0511670:intron | 45.0% | |
| GGCGAAATATGCAGAGAAGT+TGG | - | chr3_4:61298286-61298305 | Msa0511670:intron | 45.0% | |
| AGTTGCAGAGCTACCAGTAA+AGG | + | chr3_4:61298535-61298554 | None:intergenic | 45.0% | |
| ! | TTTACTGGTAGCTCTGCAAC+TGG | - | chr3_4:61298534-61298553 | Msa0511670:intron | 45.0% |
| ! | TTACTGGTAGCTCTGCAACT+GGG | - | chr3_4:61298535-61298554 | Msa0511670:intron | 45.0% |
| AGCTGCAGCACAACTAATCA+AGG | - | chr3_4:61298572-61298591 | Msa0511670:intron | 45.0% | |
| !!! | CAGCCTGTTTTTCTAGAGCT+TGG | - | chr3_4:61298731-61298750 | Msa0511670:intron | 45.0% |
| !! | CCACCAAGCTCTAGAAAAAC+AGG | + | chr3_4:61298737-61298756 | None:intergenic | 45.0% |
| !!! | CCTGTTTTTCTAGAGCTTGG+TGG | - | chr3_4:61298734-61298753 | Msa0511670:intron | 45.0% |
| AGGCAAACCAACCCTTATCA+AGG | + | chr3_4:61298793-61298812 | None:intergenic | 45.0% | |
| GTTGCTGAATGGACCATCTA+TGG | - | chr3_4:61299030-61299049 | Msa0511670:intron | 45.0% | |
| ATTTCTGACCCCTTGGAAGA+AGG | - | chr3_4:61299381-61299400 | Msa0511670:CDS | 45.0% | |
| CCTGTGCTTCACTGACAATA+GGG | + | chr3_4:61299419-61299438 | None:intergenic | 45.0% | |
| ACCTGTGCTTCACTGACAAT+AGG | + | chr3_4:61299420-61299439 | None:intergenic | 45.0% | |
| CATGCAGTTGTTACGTAGTC+CGG | - | chr3_4:61299624-61299643 | Msa0511670:CDS | 45.0% | |
| AGCTTTCAACCCATTTGGGT+TGG | - | chr3_4:61299808-61299827 | Msa0511670:intron | 45.0% | |
| ATCTCAACGGCTAAGAGTGA+AGG | - | chr3_4:61300074-61300093 | Msa0511670:intron | 45.0% | |
| ! | ATCAACTCACTGGGTGTCAT+TGG | + | chr3_4:61300356-61300375 | None:intergenic | 45.0% |
| !!! | AGTGGTTTTGGTCGCGAATT+AGG | - | chr3_4:61300692-61300711 | Msa0511670:intron | 45.0% |
| TTGGTCGCGAATTAGGAGAA+TGG | - | chr3_4:61300699-61300718 | Msa0511670:intron | 45.0% | |
| GGTACATATCTGATGAGCAG+TGG | - | chr3_4:61300851-61300870 | Msa0511670:intron | 45.0% | |
| CTCTGGCATGGAATATGGTT+TGG | - | chr3_4:61300944-61300963 | Msa0511670:exon | 45.0% | |
| !! | GCATGGAATATGGTTTGGTG+TGG | - | chr3_4:61300949-61300968 | Msa0511670:five_prime_UTR | 45.0% |
| !! | AACCACTGGATGAAGCACTG+GGG | - | chr3_4:61297758-61297777 | Msa0511670:three_prime_UTR | 50.0% |
| TGCTTACTTGGGACCTGTTG+TGG | - | chr3_4:61297838-61297857 | Msa0511670:CDS | 50.0% | |
| !! | AGAGAAGTTGGCCTTCCTTC+CGG | - | chr3_4:61298298-61298317 | Msa0511670:intron | 50.0% |
| ! | ACTGGATTAGGCCATGAAGC+TGG | - | chr3_4:61298337-61298356 | Msa0511670:intron | 50.0% |
| AAACCTCCTAGCGATTCCGT+TGG | - | chr3_4:61299256-61299275 | Msa0511670:intron | 50.0% | |
| AGCCTGCAACCTTCTTCCAA+GGG | + | chr3_4:61299393-61299412 | None:intergenic | 50.0% | |
| TAGCCTGCAACCTTCTTCCA+AGG | + | chr3_4:61299394-61299413 | None:intergenic | 50.0% | |
| TTGGAAGAAGGTTGCAGGCT+AGG | - | chr3_4:61299393-61299412 | Msa0511670:intron | 50.0% | |
| CCCTATTGTCAGTGAAGCAC+AGG | - | chr3_4:61299416-61299435 | Msa0511670:intron | 50.0% | |
| ACCACTAGGCCAACCCAAAT+GGG | + | chr3_4:61299820-61299839 | None:intergenic | 50.0% | |
| TACCACTAGGCCAACCCAAA+TGG | + | chr3_4:61299821-61299840 | None:intergenic | 50.0% | |
| !! | TTGGGTTGGCCTAGTGGTAT+TGG | - | chr3_4:61299822-61299841 | Msa0511670:intron | 50.0% |
| !! | TTGGCCTAGTGGTATTGGCT+TGG | - | chr3_4:61299827-61299846 | Msa0511670:intron | 50.0% |
| !! | TGGCCTAGTGGTATTGGCTT+GGG | - | chr3_4:61299828-61299847 | Msa0511670:intron | 50.0% |
| GAATCGAACCTGAGACCTCA+AGG | + | chr3_4:61299872-61299891 | None:intergenic | 50.0% | |
| AAGATGCGAGCGCCTATCTA+AGG | - | chr3_4:61300498-61300517 | Msa0511670:intron | 50.0% | |
| AGGCTTCATTCGAGCTCCAT+GGG | - | chr3_4:61300655-61300674 | Msa0511670:intron | 50.0% | |
| CTACGTTTAATGCCTCCCCA+TGG | + | chr3_4:61300674-61300693 | None:intergenic | 50.0% | |
| !! | TGGGGAGGCATTAAACGTAG+TGG | - | chr3_4:61300674-61300693 | Msa0511670:intron | 50.0% |
| !! | ACCACTGGATGAAGCACTGG+GGG | - | chr3_4:61297759-61297778 | Msa0511670:three_prime_UTR | 55.0% |
| !! | TGCTGGACTTGCTGAAGGGT+TGG | - | chr3_4:61297906-61297925 | Msa0511670:intron | 55.0% |
| ATCCTCTCTCAATGGCGGCA+AGG | - | chr3_4:61298102-61298121 | Msa0511670:intron | 55.0% | |
| TTCCTTGCCGCCATTGAGAG+AGG | + | chr3_4:61298107-61298126 | None:intergenic | 55.0% | |
| !! | CCAAAGAAGCGCCAGCTTCA+TGG | + | chr3_4:61298351-61298370 | None:intergenic | 55.0% |
| CCATGAAGCTGGCGCTTCTT+TGG | - | chr3_4:61298348-61298367 | Msa0511670:intron | 55.0% | |
| AAGCCAACGGAATCGCTAGG+AGG | + | chr3_4:61299262-61299281 | None:intergenic | 55.0% | |
| CCAAAGCCAACGGAATCGCT+AGG | + | chr3_4:61299265-61299284 | None:intergenic | 55.0% | |
| !! | CCTAGCGATTCCGTTGGCTT+TGG | - | chr3_4:61299262-61299281 | Msa0511670:intron | 55.0% |
| ACCCCTTGGAAGAAGGTTGC+AGG | - | chr3_4:61299388-61299407 | Msa0511670:intron | 55.0% | |
| GCCTGCAACCTTCTTCCAAG+GGG | + | chr3_4:61299392-61299411 | None:intergenic | 55.0% | |
| !! | ACCCATTTGGGTTGGCCTAG+TGG | - | chr3_4:61299816-61299835 | Msa0511670:intron | 55.0% |
| GGTCCCAAGCCAATACCACT+AGG | + | chr3_4:61299834-61299853 | None:intergenic | 55.0% | |
| !! | AGTGGTATTGGCTTGGGACC+TGG | - | chr3_4:61299834-61299853 | Msa0511670:intron | 55.0% |
| !! | GTGGTATTGGCTTGGGACCT+GGG | - | chr3_4:61299835-61299854 | Msa0511670:intron | 55.0% |
| TCGAACCTGAGACCTCAAGG+AGG | + | chr3_4:61299869-61299888 | None:intergenic | 55.0% | |
| ! | AACTGGTGGATGTCGACCAG+AGG | - | chr3_4:61300109-61300128 | Msa0511670:intron | 55.0% |
| CAGGCTTCATTCGAGCTCCA+TGG | - | chr3_4:61300654-61300673 | Msa0511670:intron | 55.0% | |
| GGCTTCATTCGAGCTCCATG+GGG | - | chr3_4:61300656-61300675 | Msa0511670:intron | 55.0% | |
| TTCATTCGAGCTCCATGGGG+AGG | - | chr3_4:61300659-61300678 | Msa0511670:intron | 55.0% | |
| TATCTGATGAGCAGTGGGGC+TGG | - | chr3_4:61300857-61300876 | Msa0511670:intron | 55.0% | |
| TCCCCCAGTGCTTCATCCAG+TGG | + | chr3_4:61297763-61297782 | None:intergenic | 60.0% | |
| !! | GGATGAAGCACTGGGGGACA+TGG | - | chr3_4:61297765-61297784 | Msa0511670:three_prime_UTR | 60.0% |
| ! | ATTGCTCCAGCTCTGGCTGC+TGG | - | chr3_4:61298128-61298147 | Msa0511670:intron | 60.0% |
| ! | TCAAGGAGGAGCACACTCCC+AGG | + | chr3_4:61299855-61299874 | None:intergenic | 60.0% |
| ! | TGGGAGTGTGCTCCTCCTTG+AGG | - | chr3_4:61299854-61299873 | Msa0511670:intron | 60.0% |
| GTGCTCCTCCTTGAGGTCTC+AGG | - | chr3_4:61299861-61299880 | Msa0511670:intron | 60.0% | |
| GCACAACCAGCAGCCAGAGC+TGG | + | chr3_4:61298137-61298156 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 61297641 | 61301088 | 61297641 | ID=Msa0511670;Name=Msa0511670 |
| chr3_4 | mRNA | 61297641 | 61301088 | 61297641 | ID=Msa0511670-mRNA-1;Parent=Msa0511670;Name=Msa0511670-mRNA-1;_AED=0.09;_eAED=0.09;_QI=143|1|1|1|1|1|13|182|394 |
| chr3_4 | exon | 61297641 | 61297916 | 61297641 | ID=Msa0511670-mRNA-1:exon:14955;Parent=Msa0511670-mRNA-1 |
| chr3_4 | exon | 61298009 | 61298115 | 61298009 | ID=Msa0511670-mRNA-1:exon:14954;Parent=Msa0511670-mRNA-1 |
| chr3_4 | exon | 61298210 | 61298270 | 61298210 | ID=Msa0511670-mRNA-1:exon:14953;Parent=Msa0511670-mRNA-1 |
| chr3_4 | exon | 61298364 | 61298515 | 61298364 | ID=Msa0511670-mRNA-1:exon:14952;Parent=Msa0511670-mRNA-1 |
| chr3_4 | exon | 61298599 | 61298676 | 61298599 | ID=Msa0511670-mRNA-1:exon:14951;Parent=Msa0511670-mRNA-1 |
| chr3_4 | exon | 61299292 | 61299405 | 61299292 | ID=Msa0511670-mRNA-1:exon:14950;Parent=Msa0511670-mRNA-1 |
| chr3_4 | exon | 61299622 | 61299698 | 61299622 | ID=Msa0511670-mRNA-1:exon:14949;Parent=Msa0511670-mRNA-1 |
| chr3_4 | exon | 61299929 | 61299995 | 61299929 | ID=Msa0511670-mRNA-1:exon:14948;Parent=Msa0511670-mRNA-1 |
| chr3_4 | exon | 61300136 | 61300201 | 61300136 | ID=Msa0511670-mRNA-1:exon:14947;Parent=Msa0511670-mRNA-1 |
| chr3_4 | exon | 61300336 | 61300459 | 61300336 | ID=Msa0511670-mRNA-1:exon:14946;Parent=Msa0511670-mRNA-1 |
| chr3_4 | exon | 61300540 | 61300632 | 61300540 | ID=Msa0511670-mRNA-1:exon:14945;Parent=Msa0511670-mRNA-1 |
| chr3_4 | exon | 61300704 | 61300852 | 61300704 | ID=Msa0511670-mRNA-1:exon:14944;Parent=Msa0511670-mRNA-1 |
| chr3_4 | exon | 61300943 | 61301088 | 61300943 | ID=Msa0511670-mRNA-1:exon:14943;Parent=Msa0511670-mRNA-1 |
| chr3_4 | five_prime_UTR | 61300946 | 61301088 | 61300946 | ID=Msa0511670-mRNA-1:five_prime_utr;Parent=Msa0511670-mRNA-1 |
| chr3_4 | CDS | 61300943 | 61300945 | 61300943 | ID=Msa0511670-mRNA-1:cds;Parent=Msa0511670-mRNA-1 |
| chr3_4 | CDS | 61300704 | 61300852 | 61300704 | ID=Msa0511670-mRNA-1:cds;Parent=Msa0511670-mRNA-1 |
| chr3_4 | CDS | 61300540 | 61300632 | 61300540 | ID=Msa0511670-mRNA-1:cds;Parent=Msa0511670-mRNA-1 |
| chr3_4 | CDS | 61300336 | 61300459 | 61300336 | ID=Msa0511670-mRNA-1:cds;Parent=Msa0511670-mRNA-1 |
| chr3_4 | CDS | 61300136 | 61300201 | 61300136 | ID=Msa0511670-mRNA-1:cds;Parent=Msa0511670-mRNA-1 |
| chr3_4 | CDS | 61299929 | 61299995 | 61299929 | ID=Msa0511670-mRNA-1:cds;Parent=Msa0511670-mRNA-1 |
| chr3_4 | CDS | 61299622 | 61299698 | 61299622 | ID=Msa0511670-mRNA-1:cds;Parent=Msa0511670-mRNA-1 |
| chr3_4 | CDS | 61299292 | 61299405 | 61299292 | ID=Msa0511670-mRNA-1:cds;Parent=Msa0511670-mRNA-1 |
| chr3_4 | CDS | 61298599 | 61298676 | 61298599 | ID=Msa0511670-mRNA-1:cds;Parent=Msa0511670-mRNA-1 |
| chr3_4 | CDS | 61298364 | 61298515 | 61298364 | ID=Msa0511670-mRNA-1:cds;Parent=Msa0511670-mRNA-1 |
| chr3_4 | CDS | 61298210 | 61298270 | 61298210 | ID=Msa0511670-mRNA-1:cds;Parent=Msa0511670-mRNA-1 |
| chr3_4 | CDS | 61298009 | 61298115 | 61298009 | ID=Msa0511670-mRNA-1:cds;Parent=Msa0511670-mRNA-1 |
| chr3_4 | CDS | 61297823 | 61297916 | 61297823 | ID=Msa0511670-mRNA-1:cds;Parent=Msa0511670-mRNA-1 |
| chr3_4 | three_prime_UTR | 61297641 | 61297822 | 61297641 | ID=Msa0511670-mRNA-1:three_prime_utr;Parent=Msa0511670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
