AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0512060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0512060 MtrunA17_Chr3g0118771 94.485 272 15 0 2 273 100 371 0.0 540
Msa0512060 MtrunA17_Chr3g0118751 89.723 253 26 0 2 254 85 337 8.67e-170 477
Msa0512060 MtrunA17_Chr3g0118671 79.779 272 55 0 2 273 85 356 1.57e-166 470
Msa0512060 MtrunA17_Chr3g0118691 80.882 272 52 0 2 273 94 365 5.36e-165 467
Msa0512060 MtrunA17_Chr3g0118711 79.044 272 57 0 2 273 92 363 1.55e-161 458
Msa0512060 MtrunA17_Chr3g0118701 78.309 272 59 0 2 273 94 365 1.61e-161 458
Msa0512060 MtrunA17_Chr3g0118661 61.029 272 105 1 2 273 92 362 1.68e-117 346
Msa0512060 MtrunA17_Chr3g0118721 81.395 172 32 0 102 273 1 172 3.61e-102 300
Msa0512060 MtrunA17_Chr5g0426431 48.897 272 136 2 2 273 92 360 3.98e-94 286
Msa0512060 MtrunA17_Chr3g0092641 48.897 272 136 2 2 273 92 360 3.66e-91 278
Msa0512060 MtrunA17_Chr2g0278711 44.322 273 146 3 2 273 91 358 1.17e-78 246
Msa0512060 MtrunA17_Chr3g0078841 44.118 272 150 2 2 273 91 360 1.46e-78 246
Msa0512060 MtrunA17_Chr6g0454191 42.909 275 151 4 2 273 92 363 5.83e-76 239
Msa0512060 MtrunA17_Chr6g0454331 44.727 275 146 3 2 273 90 361 2.98e-75 237
Msa0512060 MtrunA17_Chr6g0454341 42.279 272 155 2 2 273 91 360 4.67e-75 237
Msa0512060 MtrunA17_Chr6g0454321 42.647 272 154 2 2 273 91 360 7.25e-75 241
Msa0512060 MtrunA17_Chr6g0454181 42.125 273 152 3 4 273 93 362 6.10e-74 234
Msa0512060 MtrunA17_Chr8g0336331 43.636 275 147 3 2 273 90 359 8.42e-74 233
Msa0512060 MtrunA17_Chr6g0454251 41.455 275 155 3 2 273 88 359 2.06e-73 230
Msa0512060 MtrunA17_Chr6g0454201 45.091 275 145 4 2 273 92 363 5.22e-73 231
Msa0512060 MtrunA17_Chr6g0454211 43.841 276 147 4 2 273 378 649 5.26e-73 238
Msa0512060 MtrunA17_Chr6g0454211 34.884 215 106 3 59 273 21 201 2.46e-37 140
Msa0512060 MtrunA17_Chr4g0050341 40.580 276 160 2 2 273 98 373 1.22e-72 231
Msa0512060 MtrunA17_Chr6g0453951 43.116 276 149 4 2 273 138 409 1.29e-72 232
Msa0512060 MtrunA17_Chr6g0454401 43.116 276 149 4 2 273 92 363 1.43e-72 230
Msa0512060 MtrunA17_Chr6g0454291 42.909 275 151 3 2 273 88 359 8.94e-72 228
Msa0512060 MtrunA17_Chr6g0454361 42.391 276 151 4 2 273 92 363 2.71e-71 227
Msa0512060 MtrunA17_Chr6g0454301 41.912 272 156 2 2 273 344 613 4.99e-69 227
Msa0512060 MtrunA17_Chr6g0454301 49.558 113 54 2 161 273 3 112 2.91e-30 119
Msa0512060 MtrunA17_Chr6g0453961 40.942 276 156 4 2 273 100 372 6.41e-68 219
Msa0512060 MtrunA17_Chr6g0452771 41.091 275 156 3 2 273 91 362 1.01e-67 218
Msa0512060 MtrunA17_Chr8g0359821 40.000 270 156 3 7 273 94 360 9.45e-66 213
Msa0512060 MtrunA17_Chr6g0454121 40.441 272 156 3 5 273 93 361 2.21e-65 212
Msa0512060 MtrunA17_Chr6g0454151 41.091 275 154 4 2 273 91 360 1.06e-63 207
Msa0512060 MtrunA17_Chr5g0426401 47.668 193 96 3 83 273 4 193 9.47e-62 197
Msa0512060 MtrunA17_Chr6g0454131 38.636 264 156 3 13 273 101 361 1.44e-61 202
Msa0512060 MtrunA17_Chr6g0454351 40.217 276 140 5 2 273 93 347 1.20e-60 199
Msa0512060 MtrunA17_Chr6g0453981 40.773 233 133 3 41 272 3 231 2.23e-60 191
Msa0512060 MtrunA17_Chr6g0454261 38.783 263 155 3 14 273 103 362 4.07e-59 196
Msa0512060 MtrunA17_Chr6g0454141 36.727 275 168 3 2 273 91 362 5.51e-58 192
Msa0512060 MtrunA17_Chr6g0453941 47.644 191 97 2 61 250 75 263 1.61e-56 183
Msa0512060 MtrunA17_Chr7g0217881 37.681 276 146 5 2 273 91 344 2.39e-56 188
Msa0512060 MtrunA17_Chr5g0423981 38.406 276 127 6 2 273 91 327 7.84e-53 178
Msa0512060 MtrunA17_Chr3g0118731 89.157 83 9 0 2 84 55 137 2.15e-49 161
Msa0512060 MtrunA17_Chr6g0454271 45.930 172 90 2 102 273 1 169 1.63e-46 157
Msa0512060 MtrunA17_Chr8g0355011 34.694 245 115 3 29 273 45 244 8.52e-44 152
Msa0512060 MtrunA17_Chr6g0454111 44.099 161 87 2 81 240 25 183 1.14e-42 144
Msa0512060 MtrunA17_Chr3g0112771 32.117 274 164 6 2 273 81 334 1.39e-36 135
Msa0512060 MtrunA17_Chr5g0412131 34.008 247 152 6 30 273 115 353 2.44e-36 135
Msa0512060 MtrunA17_Chr3g0112761 32.707 266 160 7 10 273 83 331 9.18e-36 133
Msa0512060 MtrunA17_Chr8g0336271 41.290 155 91 0 2 156 90 244 3.84e-35 127
Msa0512060 MtrunA17_Chr6g0454171 33.028 218 95 5 60 273 22 192 2.15e-33 124
Msa0512060 MtrunA17_Chr5g0412111 31.174 247 157 6 30 273 109 345 9.30e-33 125
Msa0512060 MtrunA17_Chr5g0412101 32.794 247 156 5 30 273 115 354 2.05e-31 121
Msa0512060 MtrunA17_Chr6g0454221 48.673 113 56 2 161 273 3 113 4.00e-30 115
Msa0512060 MtrunA17_Chr4g0032331 29.304 273 161 9 10 273 85 334 9.24e-27 108
Msa0512060 MtrunA17_Chr6g0454231 36.054 147 94 0 2 148 331 477 7.30e-26 106
Msa0512060 MtrunA17_Chr1g0161351 27.444 266 168 8 13 273 129 374 7.63e-24 100
Msa0512060 MtrunA17_Chr6g0454381 34.109 129 85 0 41 169 3 131 5.07e-23 92.0
Msa0512060 MtrunA17_Chr8g0365811 26.690 281 175 10 6 273 572 834 1.39e-22 97.4
Msa0512060 MtrunA17_Chr8g0365811 25.397 252 162 9 30 273 119 352 2.36e-17 82.0
Msa0512060 MtrunA17_Chr1g0207861 27.170 265 170 8 13 273 100 345 2.71e-22 96.3
Msa0512060 MtrunA17_Chr1g0207981 27.092 251 162 8 26 273 119 351 4.23e-22 95.5
Msa0512060 MtrunA17_Chr5g0414331 26.429 280 171 8 1 273 81 332 7.76e-22 94.7
Msa0512060 MtrunA17_Chr7g0218821 26.667 270 168 7 5 273 92 332 1.03e-20 91.3
Msa0512060 MtrunA17_Chr5g0414321 27.381 252 150 7 29 273 105 330 1.28e-20 91.3
Msa0512060 MtrunA17_Chr7g0218791 29.242 277 154 11 5 273 87 329 3.56e-20 89.7
Msa0512060 MtrunA17_Chr1g0207951 26.562 256 160 8 22 273 218 449 1.44e-19 88.6
Msa0512060 MtrunA17_Chr1g0207951 25.391 256 161 8 22 273 756 985 6.38e-15 75.1
Msa0512060 MtrunA17_Chr7g0249981 28.287 251 146 8 30 273 122 345 1.50e-19 88.2
Msa0512060 MtrunA17_Chr3g0098111 24.314 255 173 6 22 273 109 346 2.65e-19 87.4
Msa0512060 MtrunA17_Chr5g0401721 29.353 201 124 8 81 273 159 349 3.38e-19 87.0
Msa0512060 MtrunA17_Chr8g0339631 24.549 277 171 6 21 281 101 355 4.65e-19 86.7
Msa0512060 MtrunA17_Chr7g0218811 26.394 269 170 7 5 273 91 331 9.91e-19 85.5
Msa0512060 MtrunA17_Chr6g0464871 28.137 263 157 9 16 273 110 345 1.54e-18 85.1
Msa0512060 MtrunA17_Chr6g0464921 25.940 266 164 8 14 273 96 334 2.02e-18 84.7
Msa0512060 MtrunA17_Chr5g0426411 44.444 81 45 0 2 82 92 172 3.89e-18 80.1
Msa0512060 MtrunA17_Chr4g0044511 36.029 136 81 3 135 268 238 369 3.93e-18 84.0
Msa0512060 MtrunA17_Chr1g0207971 25.391 256 164 8 22 273 100 332 8.09e-18 83.2
Msa0512060 MtrunA17_Chr6g0464841 27.715 267 157 9 14 273 96 333 1.15e-17 82.4
Msa0512060 MtrunA17_Chr7g0250001 23.077 260 178 6 14 273 89 326 1.23e-17 82.4
Msa0512060 MtrunA17_Chr6g0454281 38.095 105 62 1 2 103 91 195 4.12e-17 78.2
Msa0512060 MtrunA17_Chr7g0218831 27.907 258 158 7 16 273 92 321 6.19e-17 80.5
Msa0512060 MtrunA17_Chr7g0218841 26.766 269 170 7 5 273 81 322 6.51e-17 80.5
Msa0512060 MtrunA17_Chr6g0464861 27.925 265 159 9 14 273 95 332 2.48e-16 78.6
Msa0512060 MtrunA17_Chr8g0373301 23.827 277 172 6 19 281 101 352 2.85e-16 78.6
Msa0512060 MtrunA17_Chr1g0207931 31.387 137 85 3 140 273 244 374 9.07e-16 77.0
Msa0512060 MtrunA17_Chr5g0393591 26.007 273 156 8 9 273 97 331 9.18e-16 77.0
Msa0512060 MtrunA17_Chr4g0072761 21.311 244 165 5 30 273 118 334 1.01e-15 77.0
Msa0512060 MtrunA17_Chr8g0366391 28.364 275 170 10 13 282 107 359 1.24e-15 76.6
Msa0512060 MtrunA17_Chr6g0462521 26.203 187 112 4 105 282 168 337 2.03e-15 75.9
Msa0512060 MtrunA17_Chr1g0207831 23.482 247 165 6 29 273 115 339 2.25e-15 75.9
Msa0512060 MtrunA17_Chr5g0440421 27.037 270 169 10 12 270 111 363 2.76e-15 75.5
Msa0512060 MtrunA17_Chr4g0072771 21.311 244 165 5 30 273 131 347 3.25e-15 75.5
Msa0512060 MtrunA17_Chr4g0053501 29.730 185 109 8 99 273 170 343 3.56e-15 75.5
Msa0512060 MtrunA17_Chr8g0334861 27.419 186 112 5 99 272 166 340 4.77e-15 74.7
Msa0512060 MtrunA17_Chr4g0053321 32.847 137 78 5 144 273 229 358 3.01e-14 72.4
Msa0512060 MtrunA17_Chr6g0464881 24.908 273 177 9 4 273 86 333 3.66e-14 72.4
Msa0512060 MtrunA17_Chr5g0431421 25.843 267 152 10 12 273 96 321 8.06e-14 71.2
Msa0512060 MtrunA17_Chr8g0377921 24.719 267 169 9 19 273 93 339 8.20e-14 71.2
Msa0512060 MtrunA17_Chr8g0339451 24.638 276 168 8 21 278 93 346 9.65e-14 70.9
Msa0512060 MtrunA17_Chr1g0153451 29.787 188 101 7 101 273 171 342 1.01e-13 70.9
Msa0512060 MtrunA17_Chr1g0179901 31.544 149 95 4 136 281 222 366 1.13e-13 70.9
Msa0512060 MtrunA17_Chr8g0335141 34.014 147 72 7 139 273 213 346 1.69e-13 70.1
Msa0512060 MtrunA17_Chr8g0336691 24.607 191 114 5 99 273 176 352 2.03e-13 70.5
Msa0512060 MtrunA17_Chr8g0336691 26.144 153 85 4 137 273 1118 1258 9.47e-13 68.6
Msa0512060 MtrunA17_Chr8g0336741 29.530 149 79 4 139 273 214 350 2.53e-13 69.7
Msa0512060 MtrunA17_Chr8g0339601 25.688 218 131 7 79 278 9 213 2.80e-13 68.9
Msa0512060 MtrunA17_Chr6g0462531 28.947 152 84 4 139 282 216 351 3.19e-13 69.3
Msa0512060 MtrunA17_Chr4g0044481 31.544 149 95 3 135 282 205 347 3.53e-13 69.3
Msa0512060 MtrunA17_Chr4g0014061 31.868 182 102 9 107 282 184 349 4.15e-13 68.9
Msa0512060 MtrunA17_Chr5g0419771 30.201 149 98 3 135 281 241 385 4.51e-13 68.9
Msa0512060 MtrunA17_Chr7g0265041 29.333 150 99 3 135 281 217 362 4.65e-13 68.9
Msa0512060 MtrunA17_Chr8g0374931 26.941 219 135 6 29 243 116 313 4.86e-13 68.9
Msa0512060 MtrunA17_Chr5g0431361 24.715 263 164 9 12 273 97 326 5.20e-13 68.9
Msa0512060 MtrunA17_Chr5g0448551 22.000 250 166 8 30 273 107 333 5.26e-13 68.9
Msa0512060 MtrunA17_Chr8g0347281 28.205 195 113 5 99 281 179 358 6.31e-13 68.6
Msa0512060 MtrunA17_Chr8g0380531 23.333 270 167 11 14 273 97 336 7.25e-13 68.2
Msa0512060 MtrunA17_Chr5g0431441 25.660 265 163 8 13 273 106 340 7.37e-13 68.2
Msa0512060 MtrunA17_Chr6g0486251 29.677 155 80 6 134 273 202 342 7.44e-13 68.2
Msa0512060 MtrunA17_Chr6g0486201 29.677 155 80 6 134 273 202 342 7.44e-13 68.2
Msa0512060 MtrunA17_Chr6g0462571 24.280 243 147 8 38 270 121 336 8.57e-13 68.2
Msa0512060 MtrunA17_Chr7g0232311 26.263 198 116 4 99 282 169 350 1.08e-12 67.8
Msa0512060 MtrunA17_Chr7g0232401 22.662 278 173 9 14 277 96 345 1.28e-12 67.8
Msa0512060 MtrunA17_Chr8g0339461 24.627 268 162 9 29 278 109 354 1.38e-12 67.4
Msa0512060 MtrunA17_Chr8g0334851 26.702 191 103 7 99 270 172 344 2.87e-12 66.6
Msa0512060 MtrunA17_Chr3g0122001 24.016 254 176 6 29 273 585 830 2.99e-12 67.0
Msa0512060 MtrunA17_Chr3g0122001 25.194 258 168 8 29 273 105 350 1.70e-11 64.7
Msa0512060 MtrunA17_Chr3g0121991 24.627 268 177 9 19 273 168 423 3.38e-12 66.6
Msa0512060 MtrunA17_Chr6g0462551 27.072 181 108 5 99 270 174 339 3.47e-12 66.2
Msa0512060 MtrunA17_Chr7g0265141 27.703 148 96 3 135 277 214 355 3.55e-12 66.2
Msa0512060 MtrunA17_Chr7g0232411 26.984 189 111 7 99 273 169 344 3.64e-12 66.2
Msa0512060 MtrunA17_Chr6g0459311 28.000 150 83 5 139 277 217 352 3.67e-12 66.2
Msa0512060 MtrunA17_Chr2g0294921 28.182 220 131 7 29 243 265 462 4.15e-12 66.2
Msa0512060 MtrunA17_Chr5g0419761 28.495 186 113 7 104 281 186 359 5.00e-12 65.9
Msa0512060 MtrunA17_Chr8g0336261 51.852 54 25 1 220 273 1 53 5.51e-12 62.0
Msa0512060 MtrunA17_Chr8g0374941 35.455 110 65 2 136 243 670 775 5.61e-12 66.2
Msa0512060 MtrunA17_Chr8g0374941 29.677 155 96 4 136 281 1143 1293 1.27e-11 65.1
Msa0512060 MtrunA17_Chr8g0347271 26.966 178 105 4 116 281 195 359 5.85e-12 65.9
Msa0512060 MtrunA17_Chr2g0294941 25.591 254 162 8 32 277 17 251 8.56e-12 65.1
Msa0512060 MtrunA17_Chr4g0044501 25.818 275 174 10 13 282 108 357 1.17e-11 64.7
Msa0512060 MtrunA17_Chr8g0336651 25.806 155 85 4 137 273 980 1122 1.30e-11 65.1
Msa0512060 MtrunA17_Chr8g0336731 30.201 149 78 5 139 273 233 369 1.37e-11 64.7
Msa0512060 MtrunA17_Chr7g0232331 23.810 189 117 6 99 273 169 344 2.59e-11 63.5
Msa0512060 MtrunA17_Chr7g0250021 24.096 249 159 8 16 260 99 321 2.80e-11 63.2
Msa0512060 MtrunA17_Chr3g0106231 26.582 237 145 8 12 244 96 307 3.83e-11 63.2
Msa0512060 MtrunA17_Chr8g0335161 27.222 180 105 7 106 273 179 344 4.32e-11 63.2
Msa0512060 MtrunA17_Chr7g0232391 27.374 179 103 7 109 273 179 344 4.49e-11 63.2
Msa0512060 MtrunA17_Chr7g0243681 24.280 243 160 8 32 270 121 343 5.87e-11 62.8
Msa0512060 MtrunA17_Chr8g0377941 24.303 251 159 7 29 273 112 337 5.92e-11 62.8
Msa0512060 MtrunA17_Chr5g0448521 28.105 153 85 5 136 273 198 340 6.37e-11 62.4
Msa0512060 MtrunA17_Chr6g0449931 28.723 188 96 5 114 277 176 349 6.47e-11 62.4
Msa0512060 MtrunA17_Chr8g0374901 34.545 110 66 2 136 243 204 309 7.00e-11 62.4
Msa0512060 MtrunA17_Chr8g0361371 27.174 184 99 7 106 273 180 344 8.01e-11 62.4
Msa0512060 MtrunA17_Chr1g0159551 28.689 122 75 2 125 244 189 300 8.43e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0512060 AT1G22360.1 42.647 272 155 1 2 273 89 359 4.13e-83 258
Msa0512060 AT1G22340.1 43.015 272 155 0 2 273 92 363 4.30e-83 258
Msa0512060 AT1G22360.2 42.647 272 155 1 2 273 89 359 6.29e-83 257
Msa0512060 AT1G22380.1 44.485 272 150 1 2 273 92 362 1.77e-82 256
Msa0512060 AT1G22370.2 43.750 272 147 2 2 273 92 357 4.71e-82 255
Msa0512060 AT1G22400.1 43.956 273 151 2 2 273 92 363 1.19e-80 252
Msa0512060 AT1G78270.1 39.777 269 160 2 2 270 92 358 1.88e-64 210
Msa0512060 AT1G22370.1 43.784 185 103 1 89 273 4 187 6.30e-53 175
Msa0512060 AT2G36970.1 28.514 249 155 5 29 273 122 351 2.23e-30 119
Msa0512060 AT5G59590.1 29.963 267 162 8 10 273 88 332 1.71e-29 116
Msa0512060 AT2G28080.1 30.038 263 166 5 11 273 110 354 1.83e-29 116
Msa0512060 AT3G46690.1 32.103 271 155 8 8 273 86 332 6.90e-29 114
Msa0512060 AT5G38040.1 30.370 270 159 9 9 273 87 332 1.55e-28 114
Msa0512060 AT3G46680.1 30.769 247 146 8 30 273 108 332 7.53e-28 112
Msa0512060 AT5G05890.1 29.348 276 162 8 8 273 83 335 1.99e-27 110
Msa0512060 AT3G46650.1 29.670 273 148 8 8 277 87 318 1.99e-27 110
Msa0512060 AT5G59580.1 30.712 267 159 9 10 273 87 330 2.36e-27 110
Msa0512060 AT5G05880.1 28.309 272 166 8 8 273 83 331 9.05e-27 108
Msa0512060 AT3G55710.1 30.315 254 143 11 30 273 108 337 3.64e-26 107
Msa0512060 AT3G11340.1 29.588 267 163 7 9 273 84 327 3.68e-26 107
Msa0512060 AT3G46700.1 29.675 246 151 6 30 273 102 327 2.10e-25 105
Msa0512060 AT3G55700.1 27.935 247 152 7 30 273 110 333 2.22e-24 102
Msa0512060 AT5G38010.1 29.670 273 163 8 8 273 86 336 3.67e-24 101
Msa0512060 AT3G46660.1 30.769 273 157 9 8 273 91 338 7.38e-24 100
Msa0512060 AT3G46670.1 27.574 272 166 9 8 273 85 331 5.48e-23 98.2
Msa0512060 AT1G30530.1 25.820 244 157 5 30 273 113 332 1.02e-22 97.4
Msa0512060 AT5G05870.1 26.838 272 172 8 10 273 85 337 1.42e-22 97.1
Msa0512060 AT2G26480.1 29.960 247 151 8 30 273 101 328 1.94e-22 96.7
Msa0512060 AT5G05900.1 25.795 283 172 8 1 273 76 330 3.46e-22 95.9
Msa0512060 AT5G17050.1 24.180 244 163 5 30 273 117 338 1.17e-21 94.7
Msa0512060 AT5G37950.1 29.249 253 143 8 30 273 83 308 5.40e-21 91.7
Msa0512060 AT5G17040.2 29.255 188 117 3 87 273 47 219 9.39e-21 90.9
Msa0512060 AT4G15480.1 26.295 251 158 9 29 273 126 355 1.10e-20 92.0
Msa0512060 AT5G17040.1 26.122 245 151 5 30 273 106 321 1.14e-20 91.7
Msa0512060 AT4G15500.1 25.506 247 164 6 29 273 111 339 1.34e-20 91.7
Msa0512060 AT5G37950.2 28.745 247 146 6 30 273 83 302 1.36e-20 90.5
Msa0512060 AT4G34131.1 33.696 184 109 4 107 282 184 362 2.32e-20 90.9
Msa0512060 AT4G15490.1 26.449 276 176 8 4 273 89 343 6.10e-20 89.7
Msa0512060 AT3G46720.1 29.457 258 144 8 30 281 106 331 8.61e-20 89.0
Msa0512060 AT5G05860.1 27.509 269 169 7 9 273 84 330 1.38e-19 88.6
Msa0512060 AT3G21560.1 26.210 248 161 8 29 273 121 349 1.31e-18 85.9
Msa0512060 AT4G34135.1 31.522 184 112 4 107 282 185 362 5.97e-18 84.0
Msa0512060 AT1G05680.1 30.178 169 104 4 109 273 173 331 2.05e-17 82.4
Msa0512060 AT2G31750.1 27.374 179 116 4 99 273 163 331 4.74e-17 81.3
Msa0512060 AT2G31750.2 27.374 179 116 4 99 273 163 331 4.86e-17 81.3
Msa0512060 AT1G05675.1 28.994 169 106 4 109 273 173 331 5.03e-17 81.3
Msa0512060 AT5G17030.1 25.275 182 122 2 92 273 170 337 5.78e-17 80.9
Msa0512060 AT3G16520.1 29.208 202 123 7 79 273 153 341 1.46e-16 79.7
Msa0512060 AT3G16520.3 29.208 202 123 7 79 273 153 341 1.55e-16 79.7
Msa0512060 AT3G16520.2 29.208 202 123 7 79 273 153 341 1.59e-16 79.7
Msa0512060 AT2G15480.2 31.973 147 95 2 137 282 221 363 2.80e-16 79.0
Msa0512060 AT2G15480.1 31.973 147 95 2 137 282 221 363 2.99e-16 79.0
Msa0512060 AT2G30150.1 26.446 242 154 5 4 244 73 291 1.04e-15 77.0
Msa0512060 AT2G30150.2 26.446 242 154 5 4 244 89 307 1.12e-15 77.0
Msa0512060 AT2G15490.3 31.973 147 95 2 137 282 218 360 1.14e-15 77.0
Msa0512060 AT4G01070.1 27.528 178 103 3 118 281 188 353 1.47e-15 77.0
Msa0512060 AT2G23250.1 28.000 225 127 13 56 273 117 313 1.83e-15 76.3
Msa0512060 AT2G43820.1 24.597 248 157 9 29 273 104 324 4.16e-15 75.5
Msa0512060 AT2G30140.2 26.639 244 149 7 4 244 89 305 4.29e-15 75.5
Msa0512060 AT2G30140.1 26.230 244 151 7 4 244 89 306 4.76e-15 75.1
Msa0512060 AT2G31790.1 24.096 249 169 6 29 273 103 335 5.40e-15 75.1
Msa0512060 AT4G34135.2 31.507 146 88 3 107 244 185 326 5.56e-15 74.3
Msa0512060 AT2G43840.1 25.200 250 153 9 29 273 104 324 6.58e-15 74.7
Msa0512060 AT2G36750.1 28.516 256 160 8 31 281 121 358 9.95e-15 74.3
Msa0512060 AT2G15490.1 31.333 150 95 3 137 282 218 363 1.39e-14 73.9
Msa0512060 AT3G02100.1 26.267 217 139 8 30 242 122 321 2.58e-14 73.2
Msa0512060 AT2G23260.1 26.818 220 139 8 31 245 105 307 3.82e-14 72.4
Msa0512060 AT3G53160.1 30.612 147 96 3 137 281 215 357 4.87e-14 72.4
Msa0512060 AT2G36800.1 27.206 272 176 11 13 281 110 362 1.05e-13 71.2
Msa0512060 AT4G01070.2 30.345 145 75 3 137 267 207 339 1.69e-13 70.1
Msa0512060 AT2G36780.1 31.973 147 94 3 137 281 221 363 5.12e-13 69.3
Msa0512060 AT4G34138.1 29.932 147 98 2 137 282 221 363 5.77e-13 68.9
Msa0512060 AT5G66690.1 25.688 218 122 7 79 273 145 345 6.94e-13 68.9
Msa0512060 AT2G36770.1 30.612 147 96 3 137 281 221 363 1.15e-12 68.2
Msa0512060 AT5G26310.1 26.577 222 115 10 79 273 145 345 2.22e-12 67.4
Msa0512060 AT3G22250.1 24.046 262 165 7 30 273 103 348 2.60e-12 67.0
Msa0512060 AT3G21800.1 30.822 146 80 5 139 273 212 347 2.79e-12 67.0
Msa0512060 AT1G05560.1 24.545 220 130 7 29 243 106 294 2.99e-12 67.0
Msa0512060 AT1G05560.2 24.545 220 130 7 29 243 156 344 3.07e-12 67.0
Msa0512060 AT2G36760.1 29.932 147 97 3 137 281 221 363 5.91e-12 66.2
Msa0512060 AT1G01390.1 28.902 173 96 6 116 273 186 346 6.35e-12 65.9
Msa0512060 AT1G01390.2 28.902 173 96 6 116 273 203 363 6.79e-12 65.9
Msa0512060 AT1G01420.1 27.044 159 90 3 137 281 207 353 1.97e-11 64.3
Msa0512060 AT1G01420.2 27.044 159 90 3 137 281 210 356 2.15e-11 64.3
Msa0512060 AT3G21780.1 29.114 158 92 6 126 273 194 341 3.03e-11 63.9
Msa0512060 AT4G15260.1 27.848 158 92 4 126 273 81 226 4.50e-11 63.2
Msa0512060 AT4G15550.1 26.136 176 107 4 105 273 190 349 6.64e-11 62.8

Find 62 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATAAAATGGTTGAGTAAA+TGG 0.151034 3_4:+61742644 Msa0512060:CDS
TCTTCACCCATTACTATATC+TGG 0.244649 3_4:-61742787 None:intergenic
GTTGCATCTTTATCTGATTC+TGG 0.253266 3_4:-61740532 None:intergenic
GTGAAGCCCTTGACACTCTT+AGG 0.263527 3_4:+61742503 Msa0512060:CDS
TGGAAGAGTGGGTAAGGATT+TGG 0.285735 3_4:+61740693 Msa0512060:CDS
ATGACTCAGAATGCATAAAA+TGG 0.312996 3_4:+61742632 Msa0512060:CDS
GGGCCAATGCTATATATGTT+AGG 0.343893 3_4:-61742535 None:intergenic
CTAGATGAGGTTAAGGATAG+AGG 0.357626 3_4:+61742835 Msa0512060:CDS
AGCTTCTACTTGTGGGTTTG+TGG 0.362012 3_4:+61740741 Msa0512060:CDS
GATGGCAATTATGACTTTGC+TGG 0.363761 3_4:+61740673 Msa0512060:CDS
TCAGTACTATATATTAATTA+TGG 0.370543 3_4:+61742676 Msa0512060:CDS
GGAAGAGTGGGTAAGGATTT+GGG 0.371053 3_4:+61740694 Msa0512060:CDS
CGGTTTAATTTACCTTTGAA+TGG 0.372971 3_4:-61740805 None:intergenic
TCAGCAATTATACAAGTAAC+TGG 0.373014 3_4:-61740652 None:intergenic
AACACATTTGAAGAATTAGA+AGG 0.379838 3_4:+61742481 Msa0512060:CDS
ATGGTCTCAAATTGAAAATC+AGG 0.384023 3_4:-61740496 None:intergenic
ATCACTTGAAAGAATTTGCT+TGG 0.385257 3_4:+61742722 Msa0512060:CDS
TCACTTGAAAGAATTTGCTT+GGG 0.404835 3_4:+61742723 Msa0512060:CDS
CCTTGGATACAAGTTTAGAT+TGG 0.405206 3_4:+61742326 Msa0512060:CDS
ACAAGTTTAGATTGGATCTC+TGG 0.407043 3_4:+61742334 Msa0512060:CDS
AATTCCAACCACAATGAGTT+AGG 0.409400 3_4:-61742880 None:intergenic
GCTTCTACTTGTGGGTTTGT+GGG 0.414047 3_4:+61740742 Msa0512060:CDS
CATAAAATGGTTGAGTAAAT+GGG 0.417737 3_4:+61742645 Msa0512060:CDS
CAATGTTGTGTGATTCAACT+AGG 0.436379 3_4:+61740566 Msa0512060:exon
TCTGATTCTGGTAAACCATC+AGG 0.441558 3_4:-61740520 None:intergenic
TATGGACAGCTTCTACTTGT+GGG 0.455987 3_4:+61740734 Msa0512060:CDS
ATGAGGCCAGATATAGTAAT+GGG 0.468666 3_4:+61742781 Msa0512060:CDS
GGCCAATGCTATATATGTTA+GGG 0.499318 3_4:-61742534 None:intergenic
ATACAAGTAACTGGAATATG+AGG 0.502466 3_4:-61740643 None:intergenic
TGAAGCCCTTGACACTCTTA+GGG 0.503720 3_4:+61742504 Msa0512060:CDS
CTTTGCTGGAAGAGTGGGTA+AGG 0.504779 3_4:+61740687 Msa0512060:CDS
ACAAAATTGCGTGAGATCAT+CGG 0.504897 3_4:+61742447 Msa0512060:CDS
CCAATCTAAACTTGTATCCA+AGG 0.516376 3_4:-61742326 None:intergenic
ATTGGCCCACTTCACATGCT+TGG 0.521488 3_4:+61742550 Msa0512060:CDS
CTAGTTGAATCACACAACAT+TGG 0.524951 3_4:-61740565 None:intergenic
TATGACTTTGCTGGAAGAGT+GGG 0.525317 3_4:+61740682 Msa0512060:CDS
ATAGAGGATACATAACTAGT+TGG 0.530053 3_4:+61742851 Msa0512060:CDS
TGTGGGATATTTGCAATTCG+AGG 0.531454 3_4:+61740759 Msa0512060:CDS
GCATTCGAGAGATACAACTA+TGG 0.532990 3_4:+61740716 Msa0512060:CDS
TCAGTGATTCTAATGAAGCT+TGG 0.535128 3_4:-61742385 None:intergenic
CTATGGACAGCTTCTACTTG+TGG 0.540648 3_4:+61740733 Msa0512060:CDS
GGTTCCTAACTCATTGTGGT+TGG 0.541326 3_4:+61742876 Msa0512060:CDS
TTCTGGTAAACCATCAGGTA+TGG 0.543800 3_4:-61740515 None:intergenic
GCCTACCAAGCATGTGAAGT+GGG 0.545551 3_4:-61742555 None:intergenic
TGATTCTAATGAAGCTTGGA+AGG 0.547294 3_4:-61742381 None:intergenic
CACTTGAAAGAATTTGCTTG+GGG 0.550965 3_4:+61742724 Msa0512060:CDS
AGCCCTAACATATATAGCAT+TGG 0.552169 3_4:+61742532 Msa0512060:CDS
GTTACTTGTATAATTGCTGA+TGG 0.554672 3_4:+61740655 Msa0512060:CDS
GAGGATACATAACTAGTTGG+AGG 0.563766 3_4:+61742854 Msa0512060:CDS
GGAGGGTTCCTAACTCATTG+TGG 0.564364 3_4:+61742872 Msa0512060:CDS
TTATGACTTTGCTGGAAGAG+TGG 0.571412 3_4:+61740681 Msa0512060:CDS
CAATTTGAGACCATACCTGA+TGG 0.571463 3_4:+61740505 Msa0512060:five_prime_UTR
ACTTGTATCCAAGGTGCCAT+CGG 0.578172 3_4:-61742317 None:intergenic
TTTAGCCCTAAGAGTGTCAA+GGG 0.579197 3_4:-61742509 None:intergenic
AATGAGGCCAGATATAGTAA+TGG 0.584372 3_4:+61742780 Msa0512060:CDS
GCCCACTTCACATGCTTGGT+AGG 0.589057 3_4:+61742554 Msa0512060:CDS
TTAATCACGAGCTCTTTGAA+AGG 0.592339 3_4:-61740604 None:intergenic
TTAATATATAGTACTGAGCA+AGG 0.597770 3_4:-61742670 None:intergenic
TGCCTACCAAGCATGTGAAG+TGG 0.610099 3_4:-61742556 None:intergenic
AGGATACATAACTAGTTGGA+GGG 0.627180 3_4:+61742855 Msa0512060:CDS
ACCTCATCTAGAAAATCTTG+TGG 0.633955 3_4:-61742823 None:intergenic
TTCGAGGAGCTTGTCAACAG+AGG 0.649301 3_4:+61740775 Msa0512060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTTGAAATATACTT+AGG - chr3_4:61741168-61741187 None:intergenic 10.0%
!! AAAAAAAAAAAATATCAGTT+GGG - chr3_4:61741767-61741786 None:intergenic 10.0%
!! AAAAAAAAAAAAATATCAGT+TGG - chr3_4:61741768-61741787 None:intergenic 10.0%
!!! ATTCTAAAATAAAGAAATAA+AGG - chr3_4:61741902-61741921 None:intergenic 10.0%
!! ATTAAAATCAATATAAACAA+AGG - chr3_4:61742079-61742098 None:intergenic 10.0%
!!! TTATTTTTTGAAATATACTT+AGG - chr3_4:61741168-61741187 None:intergenic 10.0%
!! AAAAAAAAAAAATATCAGTT+GGG - chr3_4:61741767-61741786 None:intergenic 10.0%
!! AAAAAAAAAAAAATATCAGT+TGG - chr3_4:61741768-61741787 None:intergenic 10.0%
!!! ATTCTAAAATAAAGAAATAA+AGG - chr3_4:61741902-61741921 None:intergenic 10.0%
!! ATTAAAATCAATATAAACAA+AGG - chr3_4:61742079-61742098 None:intergenic 10.0%
!! TATATAATGTATCTAAAAAG+TGG - chr3_4:61740953-61740972 None:intergenic 15.0%
!!! TTATTTTTTCTAAAGAGTAT+TGG + chr3_4:61741120-61741139 Msa0512060:intron 15.0%
!! TTATACATTCATAATATTCA+TGG + chr3_4:61741366-61741385 Msa0512060:intron 15.0%
!! TCAGTACTATATATTAATTA+TGG + chr3_4:61742676-61742695 Msa0512060:CDS 15.0%
!! TATATAATGTATCTAAAAAG+TGG - chr3_4:61740953-61740972 None:intergenic 15.0%
!!! TTATTTTTTCTAAAGAGTAT+TGG + chr3_4:61741120-61741139 Msa0512060:intron 15.0%
!! TTATACATTCATAATATTCA+TGG + chr3_4:61741366-61741385 Msa0512060:intron 15.0%
!! TCAGTACTATATATTAATTA+TGG + chr3_4:61742676-61742695 Msa0512060:CDS 15.0%
!!! TATTTTTTTTGTACAAGAGA+GGG + chr3_4:61741736-61741755 Msa0512060:intron 20.0%
!! TTAATGCGATATGAATATTT+AGG + chr3_4:61741869-61741888 Msa0512060:intron 20.0%
!!! TATTTTTTTTGTACAAGAGA+GGG + chr3_4:61741736-61741755 Msa0512060:intron 20.0%
!! TTAATGCGATATGAATATTT+AGG + chr3_4:61741869-61741888 Msa0512060:intron 20.0%
! TGAAACATAGAGAAAAAGAT+CGG - chr3_4:61740828-61740847 None:intergenic 25.0%
!! TAGATTTTACAAAACTACGA+TGG - chr3_4:61740858-61740877 None:intergenic 25.0%
! AGTCAATAAGTAGTTCAAAT+CGG + chr3_4:61741323-61741342 Msa0512060:intron 25.0%
! ATTTGACGCATTTAATACAA+GGG - chr3_4:61741428-61741447 None:intergenic 25.0%
! AATTTGACGCATTTAATACA+AGG - chr3_4:61741429-61741448 None:intergenic 25.0%
!! TTAAATGCGTCAAATTTTGA+CGG + chr3_4:61741433-61741452 Msa0512060:intron 25.0%
!!! ATTAGTTTAGCTACTTTTCT+TGG - chr3_4:61741595-61741614 None:intergenic 25.0%
!!! GTATTTTTTTTGTACAAGAG+AGG + chr3_4:61741735-61741754 Msa0512060:intron 25.0%
!!! ACTATTTTTAGAGCTTGATA+TGG + chr3_4:61741955-61741974 Msa0512060:intron 25.0%
! AAATGTACATCACAGAAATT+AGG - chr3_4:61742025-61742044 None:intergenic 25.0%
! AACACATTTGAAGAATTAGA+AGG + chr3_4:61742481-61742500 Msa0512060:CDS 25.0%
!! CATTTTCATGAGAAAGAAAA+CGG + chr3_4:61742577-61742596 Msa0512060:CDS 25.0%
! CATAAAATGGTTGAGTAAAT+GGG + chr3_4:61742645-61742664 Msa0512060:CDS 25.0%
!! TTAATATATAGTACTGAGCA+AGG - chr3_4:61742673-61742692 None:intergenic 25.0%
!!! ATAGTAAGTTACCGTTTTTA+TGG + chr3_4:61742755-61742774 Msa0512060:CDS 25.0%
! TGAAACATAGAGAAAAAGAT+CGG - chr3_4:61740828-61740847 None:intergenic 25.0%
!! TAGATTTTACAAAACTACGA+TGG - chr3_4:61740858-61740877 None:intergenic 25.0%
! AGTCAATAAGTAGTTCAAAT+CGG + chr3_4:61741323-61741342 Msa0512060:intron 25.0%
! ATTTGACGCATTTAATACAA+GGG - chr3_4:61741428-61741447 None:intergenic 25.0%
! AATTTGACGCATTTAATACA+AGG - chr3_4:61741429-61741448 None:intergenic 25.0%
!! TTAAATGCGTCAAATTTTGA+CGG + chr3_4:61741433-61741452 Msa0512060:intron 25.0%
!!! ATTAGTTTAGCTACTTTTCT+TGG - chr3_4:61741595-61741614 None:intergenic 25.0%
!!! GTATTTTTTTTGTACAAGAG+AGG + chr3_4:61741735-61741754 Msa0512060:intron 25.0%
!!! ACTATTTTTAGAGCTTGATA+TGG + chr3_4:61741955-61741974 Msa0512060:intron 25.0%
! AAATGTACATCACAGAAATT+AGG - chr3_4:61742025-61742044 None:intergenic 25.0%
! AACACATTTGAAGAATTAGA+AGG + chr3_4:61742481-61742500 Msa0512060:CDS 25.0%
!! CATTTTCATGAGAAAGAAAA+CGG + chr3_4:61742577-61742596 Msa0512060:CDS 25.0%
! CATAAAATGGTTGAGTAAAT+GGG + chr3_4:61742645-61742664 Msa0512060:CDS 25.0%
!! TTAATATATAGTACTGAGCA+AGG - chr3_4:61742673-61742692 None:intergenic 25.0%
!!! ATAGTAAGTTACCGTTTTTA+TGG + chr3_4:61742755-61742774 Msa0512060:CDS 25.0%
ATGGTCTCAAATTGAAAATC+AGG - chr3_4:61740499-61740518 None:intergenic 30.0%
ATACAAGTAACTGGAATATG+AGG - chr3_4:61740646-61740665 None:intergenic 30.0%
TCAGCAATTATACAAGTAAC+TGG - chr3_4:61740655-61740674 None:intergenic 30.0%
GTTACTTGTATAATTGCTGA+TGG + chr3_4:61740655-61740674 Msa0512060:CDS 30.0%
! AGAGGAATTTTTCCATTCAA+AGG + chr3_4:61740793-61740812 Msa0512060:CDS 30.0%
! CGGTTTAATTTACCTTTGAA+TGG - chr3_4:61740808-61740827 None:intergenic 30.0%
TAAGTAGTGAGCCAATAAAT+GGG + chr3_4:61741273-61741292 Msa0512060:intron 30.0%
TTAACGATTAGAATATGCCT+CGG - chr3_4:61741694-61741713 None:intergenic 30.0%
ATGACTCAGAATGCATAAAA+TGG + chr3_4:61742632-61742651 Msa0512060:CDS 30.0%
GCATAAAATGGTTGAGTAAA+TGG + chr3_4:61742644-61742663 Msa0512060:CDS 30.0%
! ATCACTTGAAAGAATTTGCT+TGG + chr3_4:61742722-61742741 Msa0512060:CDS 30.0%
! TCACTTGAAAGAATTTGCTT+GGG + chr3_4:61742723-61742742 Msa0512060:CDS 30.0%
!! TACCGTTTTTATGGATAATG+AGG + chr3_4:61742764-61742783 Msa0512060:CDS 30.0%
! AGATTTTCTAGATGAGGTTA+AGG + chr3_4:61742828-61742847 Msa0512060:CDS 30.0%
ATAGAGGATACATAACTAGT+TGG + chr3_4:61742851-61742870 Msa0512060:CDS 30.0%
ATGGTCTCAAATTGAAAATC+AGG - chr3_4:61740499-61740518 None:intergenic 30.0%
ATACAAGTAACTGGAATATG+AGG - chr3_4:61740646-61740665 None:intergenic 30.0%
TCAGCAATTATACAAGTAAC+TGG - chr3_4:61740655-61740674 None:intergenic 30.0%
GTTACTTGTATAATTGCTGA+TGG + chr3_4:61740655-61740674 Msa0512060:CDS 30.0%
! AGAGGAATTTTTCCATTCAA+AGG + chr3_4:61740793-61740812 Msa0512060:CDS 30.0%
! CGGTTTAATTTACCTTTGAA+TGG - chr3_4:61740808-61740827 None:intergenic 30.0%
TAAGTAGTGAGCCAATAAAT+GGG + chr3_4:61741273-61741292 Msa0512060:intron 30.0%
TTAACGATTAGAATATGCCT+CGG - chr3_4:61741694-61741713 None:intergenic 30.0%
ATGACTCAGAATGCATAAAA+TGG + chr3_4:61742632-61742651 Msa0512060:CDS 30.0%
GCATAAAATGGTTGAGTAAA+TGG + chr3_4:61742644-61742663 Msa0512060:CDS 30.0%
! ATCACTTGAAAGAATTTGCT+TGG + chr3_4:61742722-61742741 Msa0512060:CDS 30.0%
! TCACTTGAAAGAATTTGCTT+GGG + chr3_4:61742723-61742742 Msa0512060:CDS 30.0%
!! TACCGTTTTTATGGATAATG+AGG + chr3_4:61742764-61742783 Msa0512060:CDS 30.0%
! AGATTTTCTAGATGAGGTTA+AGG + chr3_4:61742828-61742847 Msa0512060:CDS 30.0%
ATAGAGGATACATAACTAGT+TGG + chr3_4:61742851-61742870 Msa0512060:CDS 30.0%
GTTGCATCTTTATCTGATTC+TGG - chr3_4:61740535-61740554 None:intergenic 35.0%
CTAGTTGAATCACACAACAT+TGG - chr3_4:61740568-61740587 None:intergenic 35.0%
CAATGTTGTGTGATTCAACT+AGG + chr3_4:61740566-61740585 Msa0512060:exon 35.0%
TTAATCACGAGCTCTTTGAA+AGG - chr3_4:61740607-61740626 None:intergenic 35.0%
GTAAGTAGTGAGCCAATAAA+TGG + chr3_4:61741272-61741291 Msa0512060:intron 35.0%
AGTTCAAATCGGATTCTTTG+TGG + chr3_4:61741334-61741353 Msa0512060:intron 35.0%
! ACTACATTTTTGTTGGTCCT+TGG - chr3_4:61741495-61741514 None:intergenic 35.0%
AAGGACCAACAAAAATGTAG+TGG + chr3_4:61741494-61741513 Msa0512060:intron 35.0%
AGGACCAACAAAAATGTAGT+GGG + chr3_4:61741495-61741514 Msa0512060:intron 35.0%
TGGTTTAGAAGAGTTAGTCA+AGG - chr3_4:61741575-61741594 None:intergenic 35.0%
ATGTTTGCAAACTTCTCCAT+CGG + chr3_4:61741613-61741632 Msa0512060:intron 35.0%
TAACGTTATGATTCATCCGA+TGG - chr3_4:61741632-61741651 None:intergenic 35.0%
!!! GGTGCTAATGTCATTTTCAT+TGG - chr3_4:61741673-61741692 None:intergenic 35.0%
! GATGAAAATTTTGTTGCCGA+TGG + chr3_4:61742301-61742320 Msa0512060:intron 35.0%
CCAATCTAAACTTGTATCCA+AGG - chr3_4:61742329-61742348 None:intergenic 35.0%
CCTTGGATACAAGTTTAGAT+TGG + chr3_4:61742326-61742345 Msa0512060:CDS 35.0%
ACAAGTTTAGATTGGATCTC+TGG + chr3_4:61742334-61742353 Msa0512060:CDS 35.0%
TGATTCTAATGAAGCTTGGA+AGG - chr3_4:61742384-61742403 None:intergenic 35.0%
TCAGTGATTCTAATGAAGCT+TGG - chr3_4:61742388-61742407 None:intergenic 35.0%
ACAAAATTGCGTGAGATCAT+CGG + chr3_4:61742447-61742466 Msa0512060:CDS 35.0%
AGCCCTAACATATATAGCAT+TGG + chr3_4:61742532-61742551 Msa0512060:CDS 35.0%
GGCCAATGCTATATATGTTA+GGG - chr3_4:61742537-61742556 None:intergenic 35.0%
! CACTTGAAAGAATTTGCTTG+GGG + chr3_4:61742724-61742743 Msa0512060:CDS 35.0%
GGCCTCATTATCCATAAAAA+CGG - chr3_4:61742769-61742788 None:intergenic 35.0%
AATGAGGCCAGATATAGTAA+TGG + chr3_4:61742780-61742799 Msa0512060:CDS 35.0%
ATGAGGCCAGATATAGTAAT+GGG + chr3_4:61742781-61742800 Msa0512060:CDS 35.0%
TCTTCACCCATTACTATATC+TGG - chr3_4:61742790-61742809 None:intergenic 35.0%
ACCTCATCTAGAAAATCTTG+TGG - chr3_4:61742826-61742845 None:intergenic 35.0%
AGGATACATAACTAGTTGGA+GGG + chr3_4:61742855-61742874 Msa0512060:CDS 35.0%
AATTCCAACCACAATGAGTT+AGG - chr3_4:61742883-61742902 None:intergenic 35.0%
GTTGCATCTTTATCTGATTC+TGG - chr3_4:61740535-61740554 None:intergenic 35.0%
CTAGTTGAATCACACAACAT+TGG - chr3_4:61740568-61740587 None:intergenic 35.0%
CAATGTTGTGTGATTCAACT+AGG + chr3_4:61740566-61740585 Msa0512060:exon 35.0%
TTAATCACGAGCTCTTTGAA+AGG - chr3_4:61740607-61740626 None:intergenic 35.0%
GTAAGTAGTGAGCCAATAAA+TGG + chr3_4:61741272-61741291 Msa0512060:intron 35.0%
AGTTCAAATCGGATTCTTTG+TGG + chr3_4:61741334-61741353 Msa0512060:intron 35.0%
! ACTACATTTTTGTTGGTCCT+TGG - chr3_4:61741495-61741514 None:intergenic 35.0%
AAGGACCAACAAAAATGTAG+TGG + chr3_4:61741494-61741513 Msa0512060:intron 35.0%
AGGACCAACAAAAATGTAGT+GGG + chr3_4:61741495-61741514 Msa0512060:intron 35.0%
TGGTTTAGAAGAGTTAGTCA+AGG - chr3_4:61741575-61741594 None:intergenic 35.0%
ATGTTTGCAAACTTCTCCAT+CGG + chr3_4:61741613-61741632 Msa0512060:intron 35.0%
TAACGTTATGATTCATCCGA+TGG - chr3_4:61741632-61741651 None:intergenic 35.0%
!!! GGTGCTAATGTCATTTTCAT+TGG - chr3_4:61741673-61741692 None:intergenic 35.0%
! GATGAAAATTTTGTTGCCGA+TGG + chr3_4:61742301-61742320 Msa0512060:intron 35.0%
CCAATCTAAACTTGTATCCA+AGG - chr3_4:61742329-61742348 None:intergenic 35.0%
CCTTGGATACAAGTTTAGAT+TGG + chr3_4:61742326-61742345 Msa0512060:CDS 35.0%
ACAAGTTTAGATTGGATCTC+TGG + chr3_4:61742334-61742353 Msa0512060:CDS 35.0%
TGATTCTAATGAAGCTTGGA+AGG - chr3_4:61742384-61742403 None:intergenic 35.0%
TCAGTGATTCTAATGAAGCT+TGG - chr3_4:61742388-61742407 None:intergenic 35.0%
ACAAAATTGCGTGAGATCAT+CGG + chr3_4:61742447-61742466 Msa0512060:CDS 35.0%
AGCCCTAACATATATAGCAT+TGG + chr3_4:61742532-61742551 Msa0512060:CDS 35.0%
GGCCAATGCTATATATGTTA+GGG - chr3_4:61742537-61742556 None:intergenic 35.0%
! CACTTGAAAGAATTTGCTTG+GGG + chr3_4:61742724-61742743 Msa0512060:CDS 35.0%
GGCCTCATTATCCATAAAAA+CGG - chr3_4:61742769-61742788 None:intergenic 35.0%
AATGAGGCCAGATATAGTAA+TGG + chr3_4:61742780-61742799 Msa0512060:CDS 35.0%
ATGAGGCCAGATATAGTAAT+GGG + chr3_4:61742781-61742800 Msa0512060:CDS 35.0%
TCTTCACCCATTACTATATC+TGG - chr3_4:61742790-61742809 None:intergenic 35.0%
ACCTCATCTAGAAAATCTTG+TGG - chr3_4:61742826-61742845 None:intergenic 35.0%
AGGATACATAACTAGTTGGA+GGG + chr3_4:61742855-61742874 Msa0512060:CDS 35.0%
AATTCCAACCACAATGAGTT+AGG - chr3_4:61742883-61742902 None:intergenic 35.0%
! CAATTTGAGACCATACCTGA+TGG + chr3_4:61740505-61740524 Msa0512060:five_prime_UTR 40.0%
TTCTGGTAAACCATCAGGTA+TGG - chr3_4:61740518-61740537 None:intergenic 40.0%
TCTGATTCTGGTAAACCATC+AGG - chr3_4:61740523-61740542 None:intergenic 40.0%
GATGGCAATTATGACTTTGC+TGG + chr3_4:61740673-61740692 Msa0512060:CDS 40.0%
TTATGACTTTGCTGGAAGAG+TGG + chr3_4:61740681-61740700 Msa0512060:CDS 40.0%
TATGACTTTGCTGGAAGAGT+GGG + chr3_4:61740682-61740701 Msa0512060:CDS 40.0%
GCATTCGAGAGATACAACTA+TGG + chr3_4:61740716-61740735 Msa0512060:CDS 40.0%
TATGGACAGCTTCTACTTGT+GGG + chr3_4:61740734-61740753 Msa0512060:CDS 40.0%
TGTGGGATATTTGCAATTCG+AGG + chr3_4:61740759-61740778 Msa0512060:CDS 40.0%
TGGCTCACTACTTACTAACA+GGG - chr3_4:61741267-61741286 None:intergenic 40.0%
TTGGCTCACTACTTACTAAC+AGG - chr3_4:61741268-61741287 None:intergenic 40.0%
CCAGTGTCTATCCCATTTAT+TGG - chr3_4:61741287-61741306 None:intergenic 40.0%
CCAATAAATGGGATAGACAC+TGG + chr3_4:61741284-61741303 Msa0512060:intron 40.0%
TTCATGGTCATTGAGTCACA+TGG + chr3_4:61741382-61741401 Msa0512060:intron 40.0%
!! ATTTTGACGGATGCCAATCA+TGG + chr3_4:61741446-61741465 Msa0512060:intron 40.0%
TCTATCAGAGAGAGAGAGAT+TGG + chr3_4:61741531-61741550 Msa0512060:intron 40.0%
TGAAAATGACATTAGCACCG+AGG + chr3_4:61741674-61741693 Msa0512060:intron 40.0%
ATGCGATATGTGCACTGTTT+AGG + chr3_4:61741713-61741732 Msa0512060:intron 40.0%
ACGAAACTGGATTATGTGGA+CGG - chr3_4:61741994-61742013 None:intergenic 40.0%
ACAGACGAAACTGGATTATG+TGG - chr3_4:61741998-61742017 None:intergenic 40.0%
TTAGGTCTAACAGACGAAAC+TGG - chr3_4:61742007-61742026 None:intergenic 40.0%
TCTACAATCGATCATGTGTG+TGG - chr3_4:61742201-61742220 None:intergenic 40.0%
! GATGATCTCACGCAATTTTG+TGG - chr3_4:61742448-61742467 None:intergenic 40.0%
!! TTTAGCCCTAAGAGTGTCAA+GGG - chr3_4:61742512-61742531 None:intergenic 40.0%
!!! TTTTAGCCCTAAGAGTGTCA+AGG - chr3_4:61742513-61742532 None:intergenic 40.0%
GGGCCAATGCTATATATGTT+AGG - chr3_4:61742538-61742557 None:intergenic 40.0%
!! CAGCAAGTGGTTCAAGTTTT+TGG + chr3_4:61742605-61742624 Msa0512060:CDS 40.0%
! GCCACAAGATTTTCTAGATG+AGG + chr3_4:61742822-61742841 Msa0512060:CDS 40.0%
CTAGATGAGGTTAAGGATAG+AGG + chr3_4:61742835-61742854 Msa0512060:CDS 40.0%
GAGGATACATAACTAGTTGG+AGG + chr3_4:61742854-61742873 Msa0512060:CDS 40.0%
! CAATTTGAGACCATACCTGA+TGG + chr3_4:61740505-61740524 Msa0512060:five_prime_UTR 40.0%
TTCTGGTAAACCATCAGGTA+TGG - chr3_4:61740518-61740537 None:intergenic 40.0%
TCTGATTCTGGTAAACCATC+AGG - chr3_4:61740523-61740542 None:intergenic 40.0%
GATGGCAATTATGACTTTGC+TGG + chr3_4:61740673-61740692 Msa0512060:CDS 40.0%
TTATGACTTTGCTGGAAGAG+TGG + chr3_4:61740681-61740700 Msa0512060:CDS 40.0%
TATGACTTTGCTGGAAGAGT+GGG + chr3_4:61740682-61740701 Msa0512060:CDS 40.0%
GCATTCGAGAGATACAACTA+TGG + chr3_4:61740716-61740735 Msa0512060:CDS 40.0%
TATGGACAGCTTCTACTTGT+GGG + chr3_4:61740734-61740753 Msa0512060:CDS 40.0%
TGTGGGATATTTGCAATTCG+AGG + chr3_4:61740759-61740778 Msa0512060:CDS 40.0%
TGGCTCACTACTTACTAACA+GGG - chr3_4:61741267-61741286 None:intergenic 40.0%
TTGGCTCACTACTTACTAAC+AGG - chr3_4:61741268-61741287 None:intergenic 40.0%
CCAGTGTCTATCCCATTTAT+TGG - chr3_4:61741287-61741306 None:intergenic 40.0%
CCAATAAATGGGATAGACAC+TGG + chr3_4:61741284-61741303 Msa0512060:intron 40.0%
TTCATGGTCATTGAGTCACA+TGG + chr3_4:61741382-61741401 Msa0512060:intron 40.0%
!! ATTTTGACGGATGCCAATCA+TGG + chr3_4:61741446-61741465 Msa0512060:intron 40.0%
TCTATCAGAGAGAGAGAGAT+TGG + chr3_4:61741531-61741550 Msa0512060:intron 40.0%
TGAAAATGACATTAGCACCG+AGG + chr3_4:61741674-61741693 Msa0512060:intron 40.0%
ATGCGATATGTGCACTGTTT+AGG + chr3_4:61741713-61741732 Msa0512060:intron 40.0%
ACGAAACTGGATTATGTGGA+CGG - chr3_4:61741994-61742013 None:intergenic 40.0%
ACAGACGAAACTGGATTATG+TGG - chr3_4:61741998-61742017 None:intergenic 40.0%
TTAGGTCTAACAGACGAAAC+TGG - chr3_4:61742007-61742026 None:intergenic 40.0%
TCTACAATCGATCATGTGTG+TGG - chr3_4:61742201-61742220 None:intergenic 40.0%
! GATGATCTCACGCAATTTTG+TGG - chr3_4:61742448-61742467 None:intergenic 40.0%
!! TTTAGCCCTAAGAGTGTCAA+GGG - chr3_4:61742512-61742531 None:intergenic 40.0%
!!! TTTTAGCCCTAAGAGTGTCA+AGG - chr3_4:61742513-61742532 None:intergenic 40.0%
GGGCCAATGCTATATATGTT+AGG - chr3_4:61742538-61742557 None:intergenic 40.0%
!! CAGCAAGTGGTTCAAGTTTT+TGG + chr3_4:61742605-61742624 Msa0512060:CDS 40.0%
! GCCACAAGATTTTCTAGATG+AGG + chr3_4:61742822-61742841 Msa0512060:CDS 40.0%
CTAGATGAGGTTAAGGATAG+AGG + chr3_4:61742835-61742854 Msa0512060:CDS 40.0%
GAGGATACATAACTAGTTGG+AGG + chr3_4:61742854-61742873 Msa0512060:CDS 40.0%
TGGAAGAGTGGGTAAGGATT+TGG + chr3_4:61740693-61740712 Msa0512060:CDS 45.0%
GGAAGAGTGGGTAAGGATTT+GGG + chr3_4:61740694-61740713 Msa0512060:CDS 45.0%
CTATGGACAGCTTCTACTTG+TGG + chr3_4:61740733-61740752 Msa0512060:CDS 45.0%
AGCTTCTACTTGTGGGTTTG+TGG + chr3_4:61740741-61740760 Msa0512060:CDS 45.0%
GCTTCTACTTGTGGGTTTGT+GGG + chr3_4:61740742-61740761 Msa0512060:CDS 45.0%
ACTACTTACTAACAGGGGTG+TGG - chr3_4:61741261-61741280 None:intergenic 45.0%
GGCTCACTACTTACTAACAG+GGG - chr3_4:61741266-61741285 None:intergenic 45.0%
GCAAGTGACAACTGTGTCTA+GGG - chr3_4:61741473-61741492 None:intergenic 45.0%
! CGTGCCCACTACATTTTTGT+TGG - chr3_4:61741502-61741521 None:intergenic 45.0%
ATTTGCATACACTGTCAGCG+TGG + chr3_4:61742097-61742116 Msa0512060:intron 45.0%
! ACTTGTATCCAAGGTGCCAT+CGG - chr3_4:61742320-61742339 None:intergenic 45.0%
TGAAGCCCTTGACACTCTTA+GGG + chr3_4:61742504-61742523 Msa0512060:CDS 45.0%
! GAAAACGGTTTTGCAGCAAG+TGG + chr3_4:61742592-61742611 Msa0512060:CDS 45.0%
GGTTCCTAACTCATTGTGGT+TGG + chr3_4:61742876-61742895 Msa0512060:CDS 45.0%
TGGAAGAGTGGGTAAGGATT+TGG + chr3_4:61740693-61740712 Msa0512060:CDS 45.0%
GGAAGAGTGGGTAAGGATTT+GGG + chr3_4:61740694-61740713 Msa0512060:CDS 45.0%
CTATGGACAGCTTCTACTTG+TGG + chr3_4:61740733-61740752 Msa0512060:CDS 45.0%
AGCTTCTACTTGTGGGTTTG+TGG + chr3_4:61740741-61740760 Msa0512060:CDS 45.0%
GCTTCTACTTGTGGGTTTGT+GGG + chr3_4:61740742-61740761 Msa0512060:CDS 45.0%
ACTACTTACTAACAGGGGTG+TGG - chr3_4:61741261-61741280 None:intergenic 45.0%
GGCTCACTACTTACTAACAG+GGG - chr3_4:61741266-61741285 None:intergenic 45.0%
GCAAGTGACAACTGTGTCTA+GGG - chr3_4:61741473-61741492 None:intergenic 45.0%
! CGTGCCCACTACATTTTTGT+TGG - chr3_4:61741502-61741521 None:intergenic 45.0%
ATTTGCATACACTGTCAGCG+TGG + chr3_4:61742097-61742116 Msa0512060:intron 45.0%
! ACTTGTATCCAAGGTGCCAT+CGG - chr3_4:61742320-61742339 None:intergenic 45.0%
TGAAGCCCTTGACACTCTTA+GGG + chr3_4:61742504-61742523 Msa0512060:CDS 45.0%
! GAAAACGGTTTTGCAGCAAG+TGG + chr3_4:61742592-61742611 Msa0512060:CDS 45.0%
GGTTCCTAACTCATTGTGGT+TGG + chr3_4:61742876-61742895 Msa0512060:CDS 45.0%
CTTTGCTGGAAGAGTGGGTA+AGG + chr3_4:61740687-61740706 Msa0512060:CDS 50.0%
TTCGAGGAGCTTGTCAACAG+AGG + chr3_4:61740775-61740794 Msa0512060:CDS 50.0%
ATGGGATAGACACTGGAGCT+AGG + chr3_4:61741291-61741310 Msa0512060:intron 50.0%
! CTGTGTCTAGGGTCCATGAT+TGG - chr3_4:61741462-61741481 None:intergenic 50.0%
GGCAAGTGACAACTGTGTCT+AGG - chr3_4:61741474-61741493 None:intergenic 50.0%
! GACACAGTTGTCACTTGCCA+AGG + chr3_4:61741475-61741494 Msa0512060:intron 50.0%
AAGAGTTAGTCAAGGCACGC+TGG - chr3_4:61741567-61741586 None:intergenic 50.0%
! TTTTGTTGCCGATGGCACCT+TGG + chr3_4:61742309-61742328 Msa0512060:CDS 50.0%
GTGAAGCCCTTGACACTCTT+AGG + chr3_4:61742503-61742522 Msa0512060:CDS 50.0%
ATTGGCCCACTTCACATGCT+TGG + chr3_4:61742550-61742569 Msa0512060:CDS 50.0%
GCCTACCAAGCATGTGAAGT+GGG - chr3_4:61742558-61742577 None:intergenic 50.0%
TGCCTACCAAGCATGTGAAG+TGG - chr3_4:61742559-61742578 None:intergenic 50.0%
GGAGGGTTCCTAACTCATTG+TGG + chr3_4:61742872-61742891 Msa0512060:CDS 50.0%
CTTTGCTGGAAGAGTGGGTA+AGG + chr3_4:61740687-61740706 Msa0512060:CDS 50.0%
TTCGAGGAGCTTGTCAACAG+AGG + chr3_4:61740775-61740794 Msa0512060:CDS 50.0%
ATGGGATAGACACTGGAGCT+AGG + chr3_4:61741291-61741310 Msa0512060:intron 50.0%
! CTGTGTCTAGGGTCCATGAT+TGG - chr3_4:61741462-61741481 None:intergenic 50.0%
GGCAAGTGACAACTGTGTCT+AGG - chr3_4:61741474-61741493 None:intergenic 50.0%
! GACACAGTTGTCACTTGCCA+AGG + chr3_4:61741475-61741494 Msa0512060:intron 50.0%
AAGAGTTAGTCAAGGCACGC+TGG - chr3_4:61741567-61741586 None:intergenic 50.0%
! TTTTGTTGCCGATGGCACCT+TGG + chr3_4:61742309-61742328 Msa0512060:CDS 50.0%
GTGAAGCCCTTGACACTCTT+AGG + chr3_4:61742503-61742522 Msa0512060:CDS 50.0%
ATTGGCCCACTTCACATGCT+TGG + chr3_4:61742550-61742569 Msa0512060:CDS 50.0%
GCCTACCAAGCATGTGAAGT+GGG - chr3_4:61742558-61742577 None:intergenic 50.0%
TGCCTACCAAGCATGTGAAG+TGG - chr3_4:61742559-61742578 None:intergenic 50.0%
GGAGGGTTCCTAACTCATTG+TGG + chr3_4:61742872-61742891 Msa0512060:CDS 50.0%
GCCCACTTCACATGCTTGGT+AGG + chr3_4:61742554-61742573 Msa0512060:CDS 55.0%
GCCCACTTCACATGCTTGGT+AGG + chr3_4:61742554-61742573 Msa0512060:CDS 55.0%
! GTCAAGGCACGCTGGTAGCG+TGG - chr3_4:61741559-61741578 None:intergenic 65.0%
! GTCAAGGCACGCTGGTAGCG+TGG - chr3_4:61741559-61741578 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 61740495 61742912 61740495 ID=Msa0512060;Name=Msa0512060
chr3_4 mRNA 61740495 61742912 61740495 ID=Msa0512060-mRNA-1;Parent=Msa0512060;Name=Msa0512060-mRNA-1;_AED=0.20;_eAED=0.23;_QI=73|1|0.5|1|1|1|2|0|285
chr3_4 exon 61740495 61740814 61740495 ID=Msa0512060-mRNA-1:exon:15105;Parent=Msa0512060-mRNA-1
chr3_4 exon 61742302 61742912 61742302 ID=Msa0512060-mRNA-1:exon:15106;Parent=Msa0512060-mRNA-1
chr3_4 five_prime_UTR 61740495 61740567 61740495 ID=Msa0512060-mRNA-1:five_prime_utr;Parent=Msa0512060-mRNA-1
chr3_4 CDS 61740568 61740814 61740568 ID=Msa0512060-mRNA-1:cds;Parent=Msa0512060-mRNA-1
chr3_4 CDS 61742302 61742912 61742302 ID=Msa0512060-mRNA-1:cds;Parent=Msa0512060-mRNA-1
Gene Sequence

>Msa0512060

ATGTTGTGTGATTCAACTAGGAAAAATTGTTATGCTCCTTTCAAAGAGCTCGTGATTAAGCTCAACACTTCATCACCTCATATTCCAGTTACTTGTATAATTGCTGATGGCAATTATGACTTTGCTGGAAGAGTGGGTAAGGATTTGGGCATTCGAGAGATACAACTATGGACAGCTTCTACTTGTGGGTTTGTGGGATATTTGCAATTCGAGGAGCTTGTCAACAGAGGAATTTTTCCATTCAAAGATGAAAATTTTGTTGCCGATGGCACCTTGGATACAAGTTTAGATTGGATCTCTGGAATAAAAGATATCAGATTGAAAGACCTTCCAAGCTTCATTAGAATCACTGATCTAAATGATATTATGTTTGATTTCTTTTGTGTTGAGCCACAAAATTGCGTGAGATCATCGGCAATCATCATTAACACATTTGAAGAATTAGAAGGTGAAGCCCTTGACACTCTTAGGGCTAAAAGCCCTAACATATATAGCATTGGCCCACTTCACATGCTTGGTAGGCATTTTCATGAGAAAGAAAACGGTTTTGCAGCAAGTGGTTCAAGTTTTTGGAAAAATGACTCAGAATGCATAAAATGGTTGAGTAAATGGGAACCTTGCTCAGTACTATATATTAATTATGGAAGTATAACTGTTATGACAGATCATCACTTGAAAGAATTTGCTTGGGGAATAGCAAATAGTAAGTTACCGTTTTTATGGATAATGAGGCCAGATATAGTAATGGGTGAAGAAACTTCAACTTTGCCACAAGATTTTCTAGATGAGGTTAAGGATAGAGGATACATAACTAGTTGGAGGGTTCCTAACTCATTGTGGTTGGAATTCTACACTTGA
Protein sequence

>Msa0512060

MLCDSTRKNCYAPFKELVIKLNTSSPHIPVTCIIADGNYDFAGRVGKDLGIREIQLWTASTCGFVGYLQFEELVNRGIFPFKDENFVADGTLDTSLDWISGIKDIRLKDLPSFIRITDLNDIMFDFFCVEPQNCVRSSAIIINTFEELEGEALDTLRAKSPNIYSIGPLHMLGRHFHEKENGFAASGSSFWKNDSECIKWLSKWEPCSVLYINYGSITVMTDHHLKEFAWGIANSKLPFLWIMRPDIVMGEETSTLPQDFLDEVKDRGYITSWRVPNSLWLEFYT*