AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0514040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0514040 MtrunA17_Chr3g0122091 90.736 367 18 3 11 375 59 411 0.0 655
Msa0514040 MtrunA17_Chr1g0151261 46.185 249 130 3 48 296 50 294 2.82e-63 206
Msa0514040 MtrunA17_Chr1g0153141 31.544 298 169 9 1 288 1 273 9.90e-27 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0514040 AT4G12240.1 56.977 344 126 5 42 375 30 361 4.68e-135 390
Msa0514040 AT5G52010.1 46.400 250 128 4 46 295 71 314 5.62e-63 207

Find 131 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAGCTATTCTGAGCTTAT+TGG 0.177466 3_4:-64687601 None:intergenic
AGCTGAAACGGGCAGGGTTT+TGG 0.228799 3_4:+64687997 Msa0514040:CDS
CACACATACGCTAAGAAATA+AGG 0.243818 3_4:+64686515 Msa0514040:five_prime_UTR
TATGTAGAGTAGGGCTGTTC+TGG 0.246065 3_4:+64687532 Msa0514040:CDS
AGAATAGCTGCAGCTTCTTT+TGG 0.246225 3_4:+64687612 Msa0514040:CDS
TGTCTCAAGACTGTTGTTAT+TGG 0.251511 3_4:+64688170 Msa0514040:CDS
GTCTCAAGACTGTTGTTATT+GGG 0.278322 3_4:+64688171 Msa0514040:CDS
TTCACAGTGACGAAAGGATT+TGG 0.287742 3_4:-64686644 None:intergenic
TGTTTGGATTGTGGCGATTT+TGG 0.302149 3_4:-64686469 None:intergenic
AGGGAGTAGAAAGGTGAAAT+TGG 0.313386 3_4:+64687887 Msa0514040:CDS
TGAGACGACACTGTCATTCT+TGG 0.314624 3_4:+64687469 Msa0514040:CDS
AATGTATTCTAGTGCATGTT+TGG 0.315866 3_4:-64686485 None:intergenic
GAGACGACACTGTCATTCTT+GGG 0.319372 3_4:+64687470 Msa0514040:CDS
GGGTAAGTATGCTATGAAAA+TGG 0.326589 3_4:+64687911 Msa0514040:CDS
TTCATAAGGTGGGATTGAAT+TGG 0.333130 3_4:-64687574 None:intergenic
TCATAGGCGGGTTGAGTGTT+TGG 0.351038 3_4:+64688091 Msa0514040:CDS
AGCTTATTGGCAACTTCATA+AGG 0.365446 3_4:-64687588 None:intergenic
ACAGGAACTGTTGTATCGTT+TGG 0.373770 3_4:+64687716 Msa0514040:CDS
CTGTATCGGTTGTGGAAAAC+TGG 0.377175 3_4:+64688282 Msa0514040:CDS
GTTGTATCGTTTGGAGGATA+AGG 0.381598 3_4:+64687725 Msa0514040:CDS
TCACAGTGACGAAAGGATTT+GGG 0.389146 3_4:-64686643 None:intergenic
CTCATGTTTGTCGTGTTTGT+GGG 0.391232 3_4:+64687769 Msa0514040:CDS
GGGTTCAAACTGTGTTAGAT+AGG 0.398462 3_4:+64688018 Msa0514040:CDS
GTTTCGGTGACAAGAGGGTT+TGG 0.401191 3_4:-64686669 None:intergenic
CAGATTTGTGTGTACAGAAA+TGG 0.408193 3_4:+64688574 Msa0514040:three_prime_UTR
TTTCGGTGACAAGAGGGTTT+GGG 0.411003 3_4:-64686668 None:intergenic
GTGTTAAGTTGAAGATCTAA+TGG 0.412212 3_4:-64688552 None:intergenic
TGAAGGTGAGGGTGAGAGAA+TGG 0.413613 3_4:-64686703 None:intergenic
CCTCATGTTTGTCGTGTTTG+TGG 0.413883 3_4:+64687768 Msa0514040:CDS
GCCAAACCATACCCAACTTT+AGG 0.418960 3_4:-64687969 None:intergenic
TTTCACGGCGACGGCAAGAA+AGG 0.420540 3_4:-64686745 None:intergenic
TCCTAAAGTTGGGTATGGTT+TGG 0.425982 3_4:+64687968 Msa0514040:CDS
CGGTGGTTGAGAAGAGTTCA+TGG 0.429781 3_4:-64686603 None:intergenic
TTGACTCCTAAAGTTGGGTA+TGG 0.429889 3_4:+64687963 Msa0514040:CDS
TCATAAGGTGGGATTGAATT+GGG 0.443856 3_4:-64687573 None:intergenic
TTTGATGGGGAAGGCGAAGA+AGG 0.453176 3_4:+64688256 Msa0514040:CDS
AATGGCATATATGAAGGTTT+CGG 0.456202 3_4:-64686685 None:intergenic
GATGCAGTTCCTAAAACATC+TGG 0.457052 3_4:+64688380 Msa0514040:CDS
AAATTAGACTCCGATGATAA+TGG 0.457209 3_4:+64688473 Msa0514040:CDS
TTGTATCGTTTGGAGGATAA+GGG 0.462961 3_4:+64687726 Msa0514040:CDS
GCTGATGAGCTGAAACGGGC+AGG 0.464292 3_4:+64687990 Msa0514040:CDS
TTCACGGCGACGGCAAGAAA+GGG 0.468489 3_4:-64686744 None:intergenic
TGGTGGATATGATGGATCAT+AGG 0.472905 3_4:+64688075 Msa0514040:CDS
TCGTGATATATTGAAAAGAT+TGG 0.474466 3_4:+64688310 Msa0514040:CDS
TGAGTGTTTGGTTCTTGTAT+CGG 0.489683 3_4:+64688103 Msa0514040:CDS
GTGTACAGAAATGGCATGTT+TGG 0.490175 3_4:+64688583 Msa0514040:three_prime_UTR
TCTCAAGACTGTTGTTATTG+GGG 0.494985 3_4:+64688172 Msa0514040:CDS
TATTGCATTGCAAAAGCATA+TGG 0.499781 3_4:+64688055 Msa0514040:CDS
CACTGTCATTCTTGGGGTCA+CGG 0.505218 3_4:+64687477 Msa0514040:CDS
GCCACGCCGGAACATATCTC+AGG 0.505686 3_4:+64686787 Msa0514040:five_prime_UTR
ACTCTACATAGCTTCTCATT+CGG 0.506498 3_4:-64687519 None:intergenic
AGTGAACCTGAGATATGTTC+CGG 0.506972 3_4:-64686793 None:intergenic
AGTGAGCTTCACAGATAAGA+TGG 0.508245 3_4:-64688526 None:intergenic
ATGAAGGTTTCGGTGACAAG+AGG 0.509214 3_4:-64686675 None:intergenic
GGGTATTCACGAAATGTTCA+CGG 0.509541 3_4:-64686623 None:intergenic
ACACATACGCTAAGAAATAA+GGG 0.512013 3_4:+64686516 Msa0514040:five_prime_UTR
AACATTGTAACTCAAAAGAA+TGG 0.514674 3_4:+64688624 Msa0514040:three_prime_UTR
GAAGGAGGCTGTATCGGTTG+TGG 0.514904 3_4:+64688274 Msa0514040:CDS
GCAGTGATGGAGTCTTGAAA+AGG 0.516098 3_4:+64688201 Msa0514040:CDS
ATGTAGAGTAGGGCTGTTCT+GGG 0.518539 3_4:+64687533 Msa0514040:CDS
GTTTGGCTGATGAGCTGAAA+CGG 0.521781 3_4:+64687985 Msa0514040:CDS
GGCGAAGAAGGAGGCTGTAT+CGG 0.522314 3_4:+64688268 Msa0514040:CDS
AAAGCATATGGTGGATATGA+TGG 0.523680 3_4:+64688067 Msa0514040:CDS
GTCATTCTTGGGGTCACGGA+AGG 0.525218 3_4:+64687481 Msa0514040:CDS
GGAACTGTTGTATCGTTTGG+AGG 0.537669 3_4:+64687719 Msa0514040:CDS
GAAAATGGAAAAGTATAAGA+AGG 0.542297 3_4:+64687926 Msa0514040:CDS
TCGTGAGAGGAGGAAAGAAC+AGG 0.542932 3_4:+64687698 Msa0514040:CDS
TCTAGTGCATGTTTGGATTG+TGG 0.544049 3_4:-64686478 None:intergenic
AATGTTACCTCACATATTTG+AGG 0.546600 3_4:-64688607 None:intergenic
CTCCTCTCACGAACAACGTG+GGG 0.546733 3_4:-64687687 None:intergenic
TGAGAGAATGGCATATATGA+AGG 0.548121 3_4:-64686691 None:intergenic
AATGAGAAGCTATGTAGAGT+AGG 0.549536 3_4:+64687522 Msa0514040:CDS
GCAACAACGAAAGAATTTCA+CGG 0.552200 3_4:-64686760 None:intergenic
AAGGCGGAATCAGATAGAAT+CGG 0.553848 3_4:+64687860 Msa0514040:CDS
AAATAAGGGTCATGCAGAGA+AGG 0.553967 3_4:+64686530 Msa0514040:five_prime_UTR
TATTGGCAACTTCATAAGGT+GGG 0.553988 3_4:-64687584 None:intergenic
CTATTGTGTAGAATATTCTA+CGG 0.555084 3_4:-64687416 None:intergenic
TTTGGCTGATGAGCTGAAAC+GGG 0.555204 3_4:+64687986 Msa0514040:CDS
ACAAGGATGACAGAGGTCCT+TGG 0.556458 3_4:+64688447 Msa0514040:CDS
TGGAGTTGTTCGACATATGG+TGG 0.559762 3_4:+64687632 Msa0514040:CDS
ATGAGAAGCTATGTAGAGTA+GGG 0.561703 3_4:+64687523 Msa0514040:CDS
CTGATGAGCTGAAACGGGCA+GGG 0.566688 3_4:+64687991 Msa0514040:CDS
ATCGGCTAGAGGGAGTAGAA+AGG 0.569230 3_4:+64687878 Msa0514040:CDS
TGAAGGTTTCGGTGACAAGA+GGG 0.571181 3_4:-64686674 None:intergenic
GGATATGATGGATCATAGGC+GGG 0.572337 3_4:+64688079 Msa0514040:CDS
GAGTAGAAAGGTGAAATTGG+TGG 0.573655 3_4:+64687890 Msa0514040:CDS
CGTTGTTGCTGTCGCCACGC+CGG 0.574318 3_4:+64686774 Msa0514040:five_prime_UTR
AGAAAGAACATATAATTGAA+AGG 0.574470 3_4:+64686569 Msa0514040:five_prime_UTR
ATCAGATAGAATCGGCTAGA+GGG 0.575206 3_4:+64687868 Msa0514040:CDS
TTGGGTTTCACAGTGACGAA+AGG 0.576313 3_4:-64686650 None:intergenic
ATTTGCAACACCATTATCAT+CGG 0.578456 3_4:-64688483 None:intergenic
ATGAGCGTGAGCATGCGAAA+AGG 0.580807 3_4:+64687841 Msa0514040:CDS
CACAAAACATACTTAAGACT+AGG 0.582140 3_4:-64688697 None:intergenic
AAGGGTCATGCAGAGAAGGT+TGG 0.591691 3_4:+64686534 Msa0514040:five_prime_UTR
TCTCACGGCGGAGAGAATGA+AGG 0.597021 3_4:-64686720 None:intergenic
TAAGGTGGGATTGAATTGGG+TGG 0.598304 3_4:-64687570 None:intergenic
TCCTCCTCTCACGAACAACG+TGG 0.601028 3_4:-64687689 None:intergenic
CGGCGGAGAGAATGAAGGTG+AGG 0.601531 3_4:-64686715 None:intergenic
AACAAATGTTTGAATGCCAG+TGG 0.602266 3_4:-64687442 None:intergenic
AGAATGACAGTGTCGTCTCA+AGG 0.604787 3_4:-64687466 None:intergenic
CCCACGTTGTTCGTGAGAGG+AGG 0.604916 3_4:+64687688 Msa0514040:CDS
ACGGCAAGAAAGGGATCTCA+CGG 0.605301 3_4:-64686735 None:intergenic
AATGCAATATCCGCAGCTTG+CGG 0.606975 3_4:-64688041 None:intergenic
AGACGACACTGTCATTCTTG+GGG 0.607766 3_4:+64687471 Msa0514040:CDS
AGTAGAAAGGTGAAATTGGT+GGG 0.609374 3_4:+64687891 Msa0514040:CDS
TGCATTGCAAAAGCATATGG+TGG 0.610349 3_4:+64688058 Msa0514040:CDS
TTCTACACAATAGAAGCCAC+TGG 0.610989 3_4:+64687426 Msa0514040:CDS
GTGGACATATAACCCAGAAG+TGG 0.612100 3_4:+64688334 Msa0514040:CDS
TTATTGGCAACTTCATAAGG+TGG 0.612373 3_4:-64687585 None:intergenic
ACGAAAGAATTTCACGGCGA+CGG 0.619257 3_4:-64686754 None:intergenic
CCTCCTCTCACGAACAACGT+GGG 0.620111 3_4:-64687688 None:intergenic
GATGGGGAAGGCGAAGAAGG+AGG 0.621967 3_4:+64688259 Msa0514040:CDS
GGCGGAGAGAATGAAGGTGA+GGG 0.622159 3_4:-64686714 None:intergenic
AATCAGATAGAATCGGCTAG+AGG 0.623094 3_4:+64687867 Msa0514040:CDS
ATGTTTGTCGTGTTTGTGGG+AGG 0.623967 3_4:+64687772 Msa0514040:CDS
AGCGTGAGCATGCGAAAAGG+CGG 0.626856 3_4:+64687844 Msa0514040:CDS
AGGATGACAGAGGTCCTTGG+TGG 0.631079 3_4:+64688450 Msa0514040:CDS
GTTAGATAGGCCGCAAGCTG+CGG 0.632475 3_4:+64688031 Msa0514040:CDS
TCATATTGATGATGACTACA+AGG 0.634259 3_4:+64688430 Msa0514040:CDS
TTATGAAGGAAGCAAAGCTA+CGG 0.640003 3_4:+64688147 Msa0514040:CDS
TGGATATGATGGATCATAGG+CGG 0.652070 3_4:+64688078 Msa0514040:CDS
ATATATTGAAAAGATTGGAG+TGG 0.659405 3_4:+64688315 Msa0514040:CDS
CCACAAACACGACAAACATG+AGG 0.661362 3_4:-64687768 None:intergenic
ACCTGAGATATGTTCCGGCG+TGG 0.672370 3_4:-64686788 None:intergenic
GTCATGCAGAGAAGGTTGGT+AGG 0.674906 3_4:+64686538 Msa0514040:five_prime_UTR
GTTTGGTCCTCAAATATGTG+AGG 0.680514 3_4:+64688600 Msa0514040:three_prime_UTR
TCCTCTCACGAACAACGTGG+GGG 0.698129 3_4:-64687686 None:intergenic
TCGGAGTCTAATTTCCACCA+AGG 0.709650 3_4:-64688464 None:intergenic
GATGACTACAAGGATGACAG+AGG 0.730694 3_4:+64688440 Msa0514040:CDS
GCAAGAAAGGGATCTCACGG+CGG 0.767134 3_4:-64686732 None:intergenic
TATTCACGAAATGTTCACGG+TGG 0.773614 3_4:-64686620 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGCTATTGATAAAATAAAAA+AGG - chr3_4:64687008-64687027 None:intergenic 15.0%
!! AGCTATTGATAAAATAAAAA+AGG - chr3_4:64687008-64687027 None:intergenic 15.0%
!! AGAAAGAACATATAATTGAA+AGG + chr3_4:64686569-64686588 Msa0514040:five_prime_UTR 20.0%
!!! AATACCAATTTTTCTAAACA+TGG - chr3_4:64687294-64687313 None:intergenic 20.0%
!!! TTGAATTCATTTGTTTTCTT+CGG + chr3_4:64687356-64687375 Msa0514040:intron 20.0%
!! AAACCATAAATAATCAAACA+AGG - chr3_4:64687383-64687402 None:intergenic 20.0%
!! AGAAAGAACATATAATTGAA+AGG + chr3_4:64686569-64686588 Msa0514040:five_prime_UTR 20.0%
!!! AATACCAATTTTTCTAAACA+TGG - chr3_4:64687294-64687313 None:intergenic 20.0%
!!! TTGAATTCATTTGTTTTCTT+CGG + chr3_4:64687356-64687375 Msa0514040:intron 20.0%
!! AAACCATAAATAATCAAACA+AGG - chr3_4:64687383-64687402 None:intergenic 20.0%
! TATTTCTTCTATTCGTTTGA+AGG - chr3_4:64687076-64687095 None:intergenic 25.0%
! TCAAACGAATAGAAGAAATA+AGG + chr3_4:64687076-64687095 Msa0514040:intron 25.0%
!! AATTCATGAGAATGATAATG+TGG + chr3_4:64687176-64687195 Msa0514040:intron 25.0%
!! AATGATAATGTGGCAAAATA+TGG + chr3_4:64687186-64687205 Msa0514040:intron 25.0%
! ATCTCCATGTTTAGAAAAAT+TGG + chr3_4:64687287-64687306 Msa0514040:CDS 25.0%
! CTATTGTGTAGAATATTCTA+CGG - chr3_4:64687419-64687438 None:intergenic 25.0%
!! GAAAATGGAAAAGTATAAGA+AGG + chr3_4:64687926-64687945 Msa0514040:CDS 25.0%
! TCGTGATATATTGAAAAGAT+TGG + chr3_4:64688310-64688329 Msa0514040:CDS 25.0%
! ATATATTGAAAAGATTGGAG+TGG + chr3_4:64688315-64688334 Msa0514040:CDS 25.0%
! AACATTGTAACTCAAAAGAA+TGG + chr3_4:64688624-64688643 Msa0514040:three_prime_UTR 25.0%
! TATTTCTTCTATTCGTTTGA+AGG - chr3_4:64687076-64687095 None:intergenic 25.0%
! TCAAACGAATAGAAGAAATA+AGG + chr3_4:64687076-64687095 Msa0514040:intron 25.0%
!! AATTCATGAGAATGATAATG+TGG + chr3_4:64687176-64687195 Msa0514040:intron 25.0%
!! AATGATAATGTGGCAAAATA+TGG + chr3_4:64687186-64687205 Msa0514040:intron 25.0%
! ATCTCCATGTTTAGAAAAAT+TGG + chr3_4:64687287-64687306 Msa0514040:CDS 25.0%
! CTATTGTGTAGAATATTCTA+CGG - chr3_4:64687419-64687438 None:intergenic 25.0%
!! GAAAATGGAAAAGTATAAGA+AGG + chr3_4:64687926-64687945 Msa0514040:CDS 25.0%
! TCGTGATATATTGAAAAGAT+TGG + chr3_4:64688310-64688329 Msa0514040:CDS 25.0%
! ATATATTGAAAAGATTGGAG+TGG + chr3_4:64688315-64688334 Msa0514040:CDS 25.0%
! AACATTGTAACTCAAAAGAA+TGG + chr3_4:64688624-64688643 Msa0514040:three_prime_UTR 25.0%
AATGTATTCTAGTGCATGTT+TGG - chr3_4:64686488-64686507 None:intergenic 30.0%
ACACATACGCTAAGAAATAA+GGG + chr3_4:64686516-64686535 Msa0514040:five_prime_UTR 30.0%
AATGGCATATATGAAGGTTT+CGG - chr3_4:64686688-64686707 None:intergenic 30.0%
! AAGCTTGGATTTGGTTTATT+TGG + chr3_4:64686847-64686866 Msa0514040:intron 30.0%
TAGTTGCTTGTAAATTCAGT+TGG + chr3_4:64686909-64686928 Msa0514040:intron 30.0%
CAGCAAAAATCATTCAATCA+AGG - chr3_4:64686953-64686972 None:intergenic 30.0%
CATGAATTAAATCGCTTTAC+AGG - chr3_4:64687164-64687183 None:intergenic 30.0%
! GGACCTTGTTTGATTATTTA+TGG + chr3_4:64687377-64687396 Msa0514040:intron 30.0%
! TATTGCATTGCAAAAGCATA+TGG + chr3_4:64688055-64688074 Msa0514040:CDS 30.0%
! TGATTTTGTCGATGTTATGA+AGG + chr3_4:64688133-64688152 Msa0514040:CDS 30.0%
! GTTTCTTTTTATCCACTTCT+GGG - chr3_4:64688349-64688368 None:intergenic 30.0%
! TGTTTCTTTTTATCCACTTC+TGG - chr3_4:64688350-64688369 None:intergenic 30.0%
GGATAAAAAGAAACACAACT+TGG + chr3_4:64688355-64688374 Msa0514040:CDS 30.0%
!! TCATATTGATGATGACTACA+AGG + chr3_4:64688430-64688449 Msa0514040:CDS 30.0%
AAATTAGACTCCGATGATAA+TGG + chr3_4:64688473-64688492 Msa0514040:CDS 30.0%
ATTTGCAACACCATTATCAT+CGG - chr3_4:64688486-64688505 None:intergenic 30.0%
!! GTGTTAAGTTGAAGATCTAA+TGG - chr3_4:64688555-64688574 None:intergenic 30.0%
AATGTTACCTCACATATTTG+AGG - chr3_4:64688610-64688629 None:intergenic 30.0%
CACAAAACATACTTAAGACT+AGG - chr3_4:64688700-64688719 None:intergenic 30.0%
AATGTATTCTAGTGCATGTT+TGG - chr3_4:64686488-64686507 None:intergenic 30.0%
ACACATACGCTAAGAAATAA+GGG + chr3_4:64686516-64686535 Msa0514040:five_prime_UTR 30.0%
AATGGCATATATGAAGGTTT+CGG - chr3_4:64686688-64686707 None:intergenic 30.0%
! AAGCTTGGATTTGGTTTATT+TGG + chr3_4:64686847-64686866 Msa0514040:intron 30.0%
TAGTTGCTTGTAAATTCAGT+TGG + chr3_4:64686909-64686928 Msa0514040:intron 30.0%
CAGCAAAAATCATTCAATCA+AGG - chr3_4:64686953-64686972 None:intergenic 30.0%
CATGAATTAAATCGCTTTAC+AGG - chr3_4:64687164-64687183 None:intergenic 30.0%
! GGACCTTGTTTGATTATTTA+TGG + chr3_4:64687377-64687396 Msa0514040:intron 30.0%
! TATTGCATTGCAAAAGCATA+TGG + chr3_4:64688055-64688074 Msa0514040:CDS 30.0%
! TGATTTTGTCGATGTTATGA+AGG + chr3_4:64688133-64688152 Msa0514040:CDS 30.0%
! GTTTCTTTTTATCCACTTCT+GGG - chr3_4:64688349-64688368 None:intergenic 30.0%
! TGTTTCTTTTTATCCACTTC+TGG - chr3_4:64688350-64688369 None:intergenic 30.0%
GGATAAAAAGAAACACAACT+TGG + chr3_4:64688355-64688374 Msa0514040:CDS 30.0%
!! TCATATTGATGATGACTACA+AGG + chr3_4:64688430-64688449 Msa0514040:CDS 30.0%
AAATTAGACTCCGATGATAA+TGG + chr3_4:64688473-64688492 Msa0514040:CDS 30.0%
ATTTGCAACACCATTATCAT+CGG - chr3_4:64688486-64688505 None:intergenic 30.0%
!! GTGTTAAGTTGAAGATCTAA+TGG - chr3_4:64688555-64688574 None:intergenic 30.0%
AATGTTACCTCACATATTTG+AGG - chr3_4:64688610-64688629 None:intergenic 30.0%
CACAAAACATACTTAAGACT+AGG - chr3_4:64688700-64688719 None:intergenic 30.0%
CACACATACGCTAAGAAATA+AGG + chr3_4:64686515-64686534 Msa0514040:five_prime_UTR 35.0%
TGAGAGAATGGCATATATGA+AGG - chr3_4:64686694-64686713 None:intergenic 35.0%
GCAACAACGAAAGAATTTCA+CGG - chr3_4:64686763-64686782 None:intergenic 35.0%
TTCGCAACAAGAGATGTAAA+GGG - chr3_4:64686829-64686848 None:intergenic 35.0%
! GGATTTGGTTTATTTGGTGA+TGG + chr3_4:64686853-64686872 Msa0514040:intron 35.0%
AGAATATTCTACGGAACTTG+AGG - chr3_4:64687410-64687429 None:intergenic 35.0%
AACAAATGTTTGAATGCCAG+TGG - chr3_4:64687445-64687464 None:intergenic 35.0%
ACTCTACATAGCTTCTCATT+CGG - chr3_4:64687522-64687541 None:intergenic 35.0%
AATGAGAAGCTATGTAGAGT+AGG + chr3_4:64687522-64687541 Msa0514040:CDS 35.0%
ATGAGAAGCTATGTAGAGTA+GGG + chr3_4:64687523-64687542 Msa0514040:CDS 35.0%
TCATAAGGTGGGATTGAATT+GGG - chr3_4:64687576-64687595 None:intergenic 35.0%
TTCATAAGGTGGGATTGAAT+TGG - chr3_4:64687577-64687596 None:intergenic 35.0%
TATTGGCAACTTCATAAGGT+GGG - chr3_4:64687587-64687606 None:intergenic 35.0%
TTATTGGCAACTTCATAAGG+TGG - chr3_4:64687588-64687607 None:intergenic 35.0%
AGCTTATTGGCAACTTCATA+AGG - chr3_4:64687591-64687610 None:intergenic 35.0%
!!! TTTTGGAGTTGTTCGACATA+TGG + chr3_4:64687629-64687648 Msa0514040:CDS 35.0%
TTGTATCGTTTGGAGGATAA+GGG + chr3_4:64687726-64687745 Msa0514040:CDS 35.0%
AGTAGAAAGGTGAAATTGGT+GGG + chr3_4:64687891-64687910 Msa0514040:CDS 35.0%
GGGTAAGTATGCTATGAAAA+TGG + chr3_4:64687911-64687930 Msa0514040:CDS 35.0%
!!! CTGTTTTGACTCCTAAAGTT+GGG + chr3_4:64687958-64687977 Msa0514040:CDS 35.0%
!! AAAGCATATGGTGGATATGA+TGG + chr3_4:64688067-64688086 Msa0514040:CDS 35.0%
!! TGAGTGTTTGGTTCTTGTAT+CGG + chr3_4:64688103-64688122 Msa0514040:CDS 35.0%
TTATGAAGGAAGCAAAGCTA+CGG + chr3_4:64688147-64688166 Msa0514040:CDS 35.0%
TGTCTCAAGACTGTTGTTAT+TGG + chr3_4:64688170-64688189 Msa0514040:CDS 35.0%
! GTCTCAAGACTGTTGTTATT+GGG + chr3_4:64688171-64688190 Msa0514040:CDS 35.0%
! TCTCAAGACTGTTGTTATTG+GGG + chr3_4:64688172-64688191 Msa0514040:CDS 35.0%
!! TTCTTGGGAGGATATTTTGA+TGG + chr3_4:64688241-64688260 Msa0514040:CDS 35.0%
!!! TCTTGGGAGGATATTTTGAT+GGG + chr3_4:64688242-64688261 Msa0514040:CDS 35.0%
! TCATCAACTCCAGATGTTTT+AGG - chr3_4:64688392-64688411 None:intergenic 35.0%
CAGATTTGTGTGTACAGAAA+TGG + chr3_4:64688574-64688593 Msa0514040:three_prime_UTR 35.0%
CACACATACGCTAAGAAATA+AGG + chr3_4:64686515-64686534 Msa0514040:five_prime_UTR 35.0%
TGAGAGAATGGCATATATGA+AGG - chr3_4:64686694-64686713 None:intergenic 35.0%
GCAACAACGAAAGAATTTCA+CGG - chr3_4:64686763-64686782 None:intergenic 35.0%
TTCGCAACAAGAGATGTAAA+GGG - chr3_4:64686829-64686848 None:intergenic 35.0%
! GGATTTGGTTTATTTGGTGA+TGG + chr3_4:64686853-64686872 Msa0514040:intron 35.0%
AGAATATTCTACGGAACTTG+AGG - chr3_4:64687410-64687429 None:intergenic 35.0%
AACAAATGTTTGAATGCCAG+TGG - chr3_4:64687445-64687464 None:intergenic 35.0%
ACTCTACATAGCTTCTCATT+CGG - chr3_4:64687522-64687541 None:intergenic 35.0%
AATGAGAAGCTATGTAGAGT+AGG + chr3_4:64687522-64687541 Msa0514040:CDS 35.0%
ATGAGAAGCTATGTAGAGTA+GGG + chr3_4:64687523-64687542 Msa0514040:CDS 35.0%
TCATAAGGTGGGATTGAATT+GGG - chr3_4:64687576-64687595 None:intergenic 35.0%
TTCATAAGGTGGGATTGAAT+TGG - chr3_4:64687577-64687596 None:intergenic 35.0%
TATTGGCAACTTCATAAGGT+GGG - chr3_4:64687587-64687606 None:intergenic 35.0%
TTATTGGCAACTTCATAAGG+TGG - chr3_4:64687588-64687607 None:intergenic 35.0%
AGCTTATTGGCAACTTCATA+AGG - chr3_4:64687591-64687610 None:intergenic 35.0%
!!! TTTTGGAGTTGTTCGACATA+TGG + chr3_4:64687629-64687648 Msa0514040:CDS 35.0%
TTGTATCGTTTGGAGGATAA+GGG + chr3_4:64687726-64687745 Msa0514040:CDS 35.0%
AGTAGAAAGGTGAAATTGGT+GGG + chr3_4:64687891-64687910 Msa0514040:CDS 35.0%
GGGTAAGTATGCTATGAAAA+TGG + chr3_4:64687911-64687930 Msa0514040:CDS 35.0%
!!! CTGTTTTGACTCCTAAAGTT+GGG + chr3_4:64687958-64687977 Msa0514040:CDS 35.0%
!! AAAGCATATGGTGGATATGA+TGG + chr3_4:64688067-64688086 Msa0514040:CDS 35.0%
!! TGAGTGTTTGGTTCTTGTAT+CGG + chr3_4:64688103-64688122 Msa0514040:CDS 35.0%
TTATGAAGGAAGCAAAGCTA+CGG + chr3_4:64688147-64688166 Msa0514040:CDS 35.0%
TGTCTCAAGACTGTTGTTAT+TGG + chr3_4:64688170-64688189 Msa0514040:CDS 35.0%
! GTCTCAAGACTGTTGTTATT+GGG + chr3_4:64688171-64688190 Msa0514040:CDS 35.0%
! TCTCAAGACTGTTGTTATTG+GGG + chr3_4:64688172-64688191 Msa0514040:CDS 35.0%
!! TTCTTGGGAGGATATTTTGA+TGG + chr3_4:64688241-64688260 Msa0514040:CDS 35.0%
!!! TCTTGGGAGGATATTTTGAT+GGG + chr3_4:64688242-64688261 Msa0514040:CDS 35.0%
! TCATCAACTCCAGATGTTTT+AGG - chr3_4:64688392-64688411 None:intergenic 35.0%
CAGATTTGTGTGTACAGAAA+TGG + chr3_4:64688574-64688593 Msa0514040:three_prime_UTR 35.0%
! TGTTTGGATTGTGGCGATTT+TGG - chr3_4:64686472-64686491 None:intergenic 40.0%
TCTAGTGCATGTTTGGATTG+TGG - chr3_4:64686481-64686500 None:intergenic 40.0%
AAATAAGGGTCATGCAGAGA+AGG + chr3_4:64686530-64686549 Msa0514040:five_prime_UTR 40.0%
TATTCACGAAATGTTCACGG+TGG - chr3_4:64686623-64686642 None:intergenic 40.0%
GGGTATTCACGAAATGTTCA+CGG - chr3_4:64686626-64686645 None:intergenic 40.0%
TCACAGTGACGAAAGGATTT+GGG - chr3_4:64686646-64686665 None:intergenic 40.0%
TTCACAGTGACGAAAGGATT+TGG - chr3_4:64686647-64686666 None:intergenic 40.0%
AGTGAACCTGAGATATGTTC+CGG - chr3_4:64686796-64686815 None:intergenic 40.0%
CAACAAGAGATGTAAAGGGA+AGG - chr3_4:64686825-64686844 None:intergenic 40.0%
CTTCGCAACAAGAGATGTAA+AGG - chr3_4:64686830-64686849 None:intergenic 40.0%
AGGTCGTATTTGTGAATGCA+AGG + chr3_4:64687096-64687115 Msa0514040:intron 40.0%
TTCTACACAATAGAAGCCAC+TGG + chr3_4:64687426-64687445 Msa0514040:CDS 40.0%
TGCAGCTATTCTGAGCTTAT+TGG - chr3_4:64687604-64687623 None:intergenic 40.0%
! AGAATAGCTGCAGCTTCTTT+TGG + chr3_4:64687612-64687631 Msa0514040:CDS 40.0%
ACAGGAACTGTTGTATCGTT+TGG + chr3_4:64687716-64687735 Msa0514040:CDS 40.0%
GTTGTATCGTTTGGAGGATA+AGG + chr3_4:64687725-64687744 Msa0514040:CDS 40.0%
CTCATGTTTGTCGTGTTTGT+GGG + chr3_4:64687769-64687788 Msa0514040:CDS 40.0%
AAGGCGGAATCAGATAGAAT+CGG + chr3_4:64687860-64687879 Msa0514040:CDS 40.0%
AATCAGATAGAATCGGCTAG+AGG + chr3_4:64687867-64687886 Msa0514040:CDS 40.0%
ATCAGATAGAATCGGCTAGA+GGG + chr3_4:64687868-64687887 Msa0514040:CDS 40.0%
AGGGAGTAGAAAGGTGAAAT+TGG + chr3_4:64687887-64687906 Msa0514040:CDS 40.0%
GAGTAGAAAGGTGAAATTGG+TGG + chr3_4:64687890-64687909 Msa0514040:CDS 40.0%
!!! GCTGTTTTGACTCCTAAAGT+TGG + chr3_4:64687957-64687976 Msa0514040:CDS 40.0%
TTGACTCCTAAAGTTGGGTA+TGG + chr3_4:64687963-64687982 Msa0514040:CDS 40.0%
TCCTAAAGTTGGGTATGGTT+TGG + chr3_4:64687968-64687987 Msa0514040:CDS 40.0%
GGGTTCAAACTGTGTTAGAT+AGG + chr3_4:64688018-64688037 Msa0514040:CDS 40.0%
! TGCATTGCAAAAGCATATGG+TGG + chr3_4:64688058-64688077 Msa0514040:CDS 40.0%
!! TGGTGGATATGATGGATCAT+AGG + chr3_4:64688075-64688094 Msa0514040:CDS 40.0%
!! TGGATATGATGGATCATAGG+CGG + chr3_4:64688078-64688097 Msa0514040:CDS 40.0%
!! ATTGGGGATTTTAGCAGTGA+TGG + chr3_4:64688188-64688207 Msa0514040:CDS 40.0%
!!! TGCCGATACTGCTTTTTCTT+GGG + chr3_4:64688226-64688245 Msa0514040:CDS 40.0%
CTCCCAAGAAAAAGCAGTAT+CGG - chr3_4:64688231-64688250 None:intergenic 40.0%
!!! CTTGGGAGGATATTTTGATG+GGG + chr3_4:64688243-64688262 Msa0514040:CDS 40.0%
GATGCAGTTCCTAAAACATC+TGG + chr3_4:64688380-64688399 Msa0514040:CDS 40.0%
AGTGAGCTTCACAGATAAGA+TGG - chr3_4:64688529-64688548 None:intergenic 40.0%
GTGTACAGAAATGGCATGTT+TGG + chr3_4:64688583-64688602 Msa0514040:three_prime_UTR 40.0%
GTTTGGTCCTCAAATATGTG+AGG + chr3_4:64688600-64688619 Msa0514040:three_prime_UTR 40.0%
! TGTTTGGATTGTGGCGATTT+TGG - chr3_4:64686472-64686491 None:intergenic 40.0%
TCTAGTGCATGTTTGGATTG+TGG - chr3_4:64686481-64686500 None:intergenic 40.0%
AAATAAGGGTCATGCAGAGA+AGG + chr3_4:64686530-64686549 Msa0514040:five_prime_UTR 40.0%
TATTCACGAAATGTTCACGG+TGG - chr3_4:64686623-64686642 None:intergenic 40.0%
GGGTATTCACGAAATGTTCA+CGG - chr3_4:64686626-64686645 None:intergenic 40.0%
TCACAGTGACGAAAGGATTT+GGG - chr3_4:64686646-64686665 None:intergenic 40.0%
TTCACAGTGACGAAAGGATT+TGG - chr3_4:64686647-64686666 None:intergenic 40.0%
AGTGAACCTGAGATATGTTC+CGG - chr3_4:64686796-64686815 None:intergenic 40.0%
CAACAAGAGATGTAAAGGGA+AGG - chr3_4:64686825-64686844 None:intergenic 40.0%
CTTCGCAACAAGAGATGTAA+AGG - chr3_4:64686830-64686849 None:intergenic 40.0%
AGGTCGTATTTGTGAATGCA+AGG + chr3_4:64687096-64687115 Msa0514040:intron 40.0%
TTCTACACAATAGAAGCCAC+TGG + chr3_4:64687426-64687445 Msa0514040:CDS 40.0%
TGCAGCTATTCTGAGCTTAT+TGG - chr3_4:64687604-64687623 None:intergenic 40.0%
! AGAATAGCTGCAGCTTCTTT+TGG + chr3_4:64687612-64687631 Msa0514040:CDS 40.0%
ACAGGAACTGTTGTATCGTT+TGG + chr3_4:64687716-64687735 Msa0514040:CDS 40.0%
GTTGTATCGTTTGGAGGATA+AGG + chr3_4:64687725-64687744 Msa0514040:CDS 40.0%
CTCATGTTTGTCGTGTTTGT+GGG + chr3_4:64687769-64687788 Msa0514040:CDS 40.0%
AAGGCGGAATCAGATAGAAT+CGG + chr3_4:64687860-64687879 Msa0514040:CDS 40.0%
AATCAGATAGAATCGGCTAG+AGG + chr3_4:64687867-64687886 Msa0514040:CDS 40.0%
ATCAGATAGAATCGGCTAGA+GGG + chr3_4:64687868-64687887 Msa0514040:CDS 40.0%
AGGGAGTAGAAAGGTGAAAT+TGG + chr3_4:64687887-64687906 Msa0514040:CDS 40.0%
GAGTAGAAAGGTGAAATTGG+TGG + chr3_4:64687890-64687909 Msa0514040:CDS 40.0%
!!! GCTGTTTTGACTCCTAAAGT+TGG + chr3_4:64687957-64687976 Msa0514040:CDS 40.0%
TTGACTCCTAAAGTTGGGTA+TGG + chr3_4:64687963-64687982 Msa0514040:CDS 40.0%
TCCTAAAGTTGGGTATGGTT+TGG + chr3_4:64687968-64687987 Msa0514040:CDS 40.0%
GGGTTCAAACTGTGTTAGAT+AGG + chr3_4:64688018-64688037 Msa0514040:CDS 40.0%
! TGCATTGCAAAAGCATATGG+TGG + chr3_4:64688058-64688077 Msa0514040:CDS 40.0%
!! TGGTGGATATGATGGATCAT+AGG + chr3_4:64688075-64688094 Msa0514040:CDS 40.0%
!! TGGATATGATGGATCATAGG+CGG + chr3_4:64688078-64688097 Msa0514040:CDS 40.0%
!! ATTGGGGATTTTAGCAGTGA+TGG + chr3_4:64688188-64688207 Msa0514040:CDS 40.0%
!!! TGCCGATACTGCTTTTTCTT+GGG + chr3_4:64688226-64688245 Msa0514040:CDS 40.0%
CTCCCAAGAAAAAGCAGTAT+CGG - chr3_4:64688231-64688250 None:intergenic 40.0%
!!! CTTGGGAGGATATTTTGATG+GGG + chr3_4:64688243-64688262 Msa0514040:CDS 40.0%
GATGCAGTTCCTAAAACATC+TGG + chr3_4:64688380-64688399 Msa0514040:CDS 40.0%
AGTGAGCTTCACAGATAAGA+TGG - chr3_4:64688529-64688548 None:intergenic 40.0%
GTGTACAGAAATGGCATGTT+TGG + chr3_4:64688583-64688602 Msa0514040:three_prime_UTR 40.0%
GTTTGGTCCTCAAATATGTG+AGG + chr3_4:64688600-64688619 Msa0514040:three_prime_UTR 40.0%
!! TGGCGATTTTGGTAGCATCA+CGG - chr3_4:64686461-64686480 None:intergenic 45.0%
TTGGGTTTCACAGTGACGAA+AGG - chr3_4:64686653-64686672 None:intergenic 45.0%
TTTCGGTGACAAGAGGGTTT+GGG - chr3_4:64686671-64686690 None:intergenic 45.0%
TGAAGGTTTCGGTGACAAGA+GGG - chr3_4:64686677-64686696 None:intergenic 45.0%
ATGAAGGTTTCGGTGACAAG+AGG - chr3_4:64686678-64686697 None:intergenic 45.0%
ACGAAAGAATTTCACGGCGA+CGG - chr3_4:64686757-64686776 None:intergenic 45.0%
ACATCTCTTGTTGCGAAGCT+TGG + chr3_4:64686832-64686851 Msa0514040:intron 45.0%
CTTGTTGCGAAGCTTGGATT+TGG + chr3_4:64686838-64686857 Msa0514040:intron 45.0%
AGAATGACAGTGTCGTCTCA+AGG - chr3_4:64687469-64687488 None:intergenic 45.0%
TGAGACGACACTGTCATTCT+TGG + chr3_4:64687469-64687488 Msa0514040:CDS 45.0%
GAGACGACACTGTCATTCTT+GGG + chr3_4:64687470-64687489 Msa0514040:CDS 45.0%
AGACGACACTGTCATTCTTG+GGG + chr3_4:64687471-64687490 Msa0514040:CDS 45.0%
TATGTAGAGTAGGGCTGTTC+TGG + chr3_4:64687532-64687551 Msa0514040:CDS 45.0%
ATGTAGAGTAGGGCTGTTCT+GGG + chr3_4:64687533-64687552 Msa0514040:CDS 45.0%
TAAGGTGGGATTGAATTGGG+TGG - chr3_4:64687573-64687592 None:intergenic 45.0%
TGGAGTTGTTCGACATATGG+TGG + chr3_4:64687632-64687651 Msa0514040:CDS 45.0%
GGAACTGTTGTATCGTTTGG+AGG + chr3_4:64687719-64687738 Msa0514040:CDS 45.0%
CCACAAACACGACAAACATG+AGG - chr3_4:64687771-64687790 None:intergenic 45.0%
CCTCATGTTTGTCGTGTTTG+TGG + chr3_4:64687768-64687787 Msa0514040:CDS 45.0%
ATGTTTGTCGTGTTTGTGGG+AGG + chr3_4:64687772-64687791 Msa0514040:CDS 45.0%
GCCAAACCATACCCAACTTT+AGG - chr3_4:64687972-64687991 None:intergenic 45.0%
GTTTGGCTGATGAGCTGAAA+CGG + chr3_4:64687985-64688004 Msa0514040:CDS 45.0%
TTTGGCTGATGAGCTGAAAC+GGG + chr3_4:64687986-64688005 Msa0514040:CDS 45.0%
AATGCAATATCCGCAGCTTG+CGG - chr3_4:64688044-64688063 None:intergenic 45.0%
!! GGATATGATGGATCATAGGC+GGG + chr3_4:64688079-64688098 Msa0514040:CDS 45.0%
! GCAGTGATGGAGTCTTGAAA+AGG + chr3_4:64688201-64688220 Msa0514040:CDS 45.0%
!!! CTGCCGATACTGCTTTTTCT+TGG + chr3_4:64688225-64688244 Msa0514040:CDS 45.0%
!!! CGATACTGCTTTTTCTTGGG+AGG + chr3_4:64688229-64688248 Msa0514040:CDS 45.0%
!!! GGAGGATATTTTGATGGGGA+AGG + chr3_4:64688247-64688266 Msa0514040:CDS 45.0%
!! CTGTATCGGTTGTGGAAAAC+TGG + chr3_4:64688282-64688301 Msa0514040:CDS 45.0%
GTGGACATATAACCCAGAAG+TGG + chr3_4:64688334-64688353 Msa0514040:CDS 45.0%
GATGACTACAAGGATGACAG+AGG + chr3_4:64688440-64688459 Msa0514040:CDS 45.0%
TCGGAGTCTAATTTCCACCA+AGG - chr3_4:64688467-64688486 None:intergenic 45.0%
!! TGGCGATTTTGGTAGCATCA+CGG - chr3_4:64686461-64686480 None:intergenic 45.0%
TTGGGTTTCACAGTGACGAA+AGG - chr3_4:64686653-64686672 None:intergenic 45.0%
TTTCGGTGACAAGAGGGTTT+GGG - chr3_4:64686671-64686690 None:intergenic 45.0%
TGAAGGTTTCGGTGACAAGA+GGG - chr3_4:64686677-64686696 None:intergenic 45.0%
ATGAAGGTTTCGGTGACAAG+AGG - chr3_4:64686678-64686697 None:intergenic 45.0%
ACGAAAGAATTTCACGGCGA+CGG - chr3_4:64686757-64686776 None:intergenic 45.0%
ACATCTCTTGTTGCGAAGCT+TGG + chr3_4:64686832-64686851 Msa0514040:intron 45.0%
CTTGTTGCGAAGCTTGGATT+TGG + chr3_4:64686838-64686857 Msa0514040:intron 45.0%
AGAATGACAGTGTCGTCTCA+AGG - chr3_4:64687469-64687488 None:intergenic 45.0%
TGAGACGACACTGTCATTCT+TGG + chr3_4:64687469-64687488 Msa0514040:CDS 45.0%
GAGACGACACTGTCATTCTT+GGG + chr3_4:64687470-64687489 Msa0514040:CDS 45.0%
AGACGACACTGTCATTCTTG+GGG + chr3_4:64687471-64687490 Msa0514040:CDS 45.0%
TATGTAGAGTAGGGCTGTTC+TGG + chr3_4:64687532-64687551 Msa0514040:CDS 45.0%
ATGTAGAGTAGGGCTGTTCT+GGG + chr3_4:64687533-64687552 Msa0514040:CDS 45.0%
TAAGGTGGGATTGAATTGGG+TGG - chr3_4:64687573-64687592 None:intergenic 45.0%
TGGAGTTGTTCGACATATGG+TGG + chr3_4:64687632-64687651 Msa0514040:CDS 45.0%
GGAACTGTTGTATCGTTTGG+AGG + chr3_4:64687719-64687738 Msa0514040:CDS 45.0%
CCACAAACACGACAAACATG+AGG - chr3_4:64687771-64687790 None:intergenic 45.0%
CCTCATGTTTGTCGTGTTTG+TGG + chr3_4:64687768-64687787 Msa0514040:CDS 45.0%
ATGTTTGTCGTGTTTGTGGG+AGG + chr3_4:64687772-64687791 Msa0514040:CDS 45.0%
GCCAAACCATACCCAACTTT+AGG - chr3_4:64687972-64687991 None:intergenic 45.0%
GTTTGGCTGATGAGCTGAAA+CGG + chr3_4:64687985-64688004 Msa0514040:CDS 45.0%
TTTGGCTGATGAGCTGAAAC+GGG + chr3_4:64687986-64688005 Msa0514040:CDS 45.0%
AATGCAATATCCGCAGCTTG+CGG - chr3_4:64688044-64688063 None:intergenic 45.0%
!! GGATATGATGGATCATAGGC+GGG + chr3_4:64688079-64688098 Msa0514040:CDS 45.0%
! GCAGTGATGGAGTCTTGAAA+AGG + chr3_4:64688201-64688220 Msa0514040:CDS 45.0%
!!! CTGCCGATACTGCTTTTTCT+TGG + chr3_4:64688225-64688244 Msa0514040:CDS 45.0%
!!! CGATACTGCTTTTTCTTGGG+AGG + chr3_4:64688229-64688248 Msa0514040:CDS 45.0%
!!! GGAGGATATTTTGATGGGGA+AGG + chr3_4:64688247-64688266 Msa0514040:CDS 45.0%
!! CTGTATCGGTTGTGGAAAAC+TGG + chr3_4:64688282-64688301 Msa0514040:CDS 45.0%
GTGGACATATAACCCAGAAG+TGG + chr3_4:64688334-64688353 Msa0514040:CDS 45.0%
GATGACTACAAGGATGACAG+AGG + chr3_4:64688440-64688459 Msa0514040:CDS 45.0%
TCGGAGTCTAATTTCCACCA+AGG - chr3_4:64688467-64688486 None:intergenic 45.0%
AAGGGTCATGCAGAGAAGGT+TGG + chr3_4:64686534-64686553 Msa0514040:five_prime_UTR 50.0%
! GTCATGCAGAGAAGGTTGGT+AGG + chr3_4:64686538-64686557 Msa0514040:five_prime_UTR 50.0%
CGGTGGTTGAGAAGAGTTCA+TGG - chr3_4:64686606-64686625 None:intergenic 50.0%
GTTTCGGTGACAAGAGGGTT+TGG - chr3_4:64686672-64686691 None:intergenic 50.0%
TGAAGGTGAGGGTGAGAGAA+TGG - chr3_4:64686706-64686725 None:intergenic 50.0%
ACGGCAAGAAAGGGATCTCA+CGG - chr3_4:64686738-64686757 None:intergenic 50.0%
CACTGTCATTCTTGGGGTCA+CGG + chr3_4:64687477-64687496 Msa0514040:CDS 50.0%
GGGGGACATTGCTAAAAGTG+TGG - chr3_4:64687671-64687690 None:intergenic 50.0%
TCGTGAGAGGAGGAAAGAAC+AGG + chr3_4:64687698-64687717 Msa0514040:CDS 50.0%
ATGAGCGTGAGCATGCGAAA+AGG + chr3_4:64687841-64687860 Msa0514040:CDS 50.0%
ATCGGCTAGAGGGAGTAGAA+AGG + chr3_4:64687878-64687897 Msa0514040:CDS 50.0%
!! TCATAGGCGGGTTGAGTGTT+TGG + chr3_4:64688091-64688110 Msa0514040:CDS 50.0%
TTTGATGGGGAAGGCGAAGA+AGG + chr3_4:64688256-64688275 Msa0514040:CDS 50.0%
ACAAGGATGACAGAGGTCCT+TGG + chr3_4:64688447-64688466 Msa0514040:CDS 50.0%
AAGGGTCATGCAGAGAAGGT+TGG + chr3_4:64686534-64686553 Msa0514040:five_prime_UTR 50.0%
! GTCATGCAGAGAAGGTTGGT+AGG + chr3_4:64686538-64686557 Msa0514040:five_prime_UTR 50.0%
CGGTGGTTGAGAAGAGTTCA+TGG - chr3_4:64686606-64686625 None:intergenic 50.0%
GTTTCGGTGACAAGAGGGTT+TGG - chr3_4:64686672-64686691 None:intergenic 50.0%
TGAAGGTGAGGGTGAGAGAA+TGG - chr3_4:64686706-64686725 None:intergenic 50.0%
ACGGCAAGAAAGGGATCTCA+CGG - chr3_4:64686738-64686757 None:intergenic 50.0%
CACTGTCATTCTTGGGGTCA+CGG + chr3_4:64687477-64687496 Msa0514040:CDS 50.0%
GGGGGACATTGCTAAAAGTG+TGG - chr3_4:64687671-64687690 None:intergenic 50.0%
TCGTGAGAGGAGGAAAGAAC+AGG + chr3_4:64687698-64687717 Msa0514040:CDS 50.0%
ATGAGCGTGAGCATGCGAAA+AGG + chr3_4:64687841-64687860 Msa0514040:CDS 50.0%
ATCGGCTAGAGGGAGTAGAA+AGG + chr3_4:64687878-64687897 Msa0514040:CDS 50.0%
!! TCATAGGCGGGTTGAGTGTT+TGG + chr3_4:64688091-64688110 Msa0514040:CDS 50.0%
TTTGATGGGGAAGGCGAAGA+AGG + chr3_4:64688256-64688275 Msa0514040:CDS 50.0%
ACAAGGATGACAGAGGTCCT+TGG + chr3_4:64688447-64688466 Msa0514040:CDS 50.0%
GGCGGAGAGAATGAAGGTGA+GGG - chr3_4:64686717-64686736 None:intergenic 55.0%
TCTCACGGCGGAGAGAATGA+AGG - chr3_4:64686723-64686742 None:intergenic 55.0%
GCAAGAAAGGGATCTCACGG+CGG - chr3_4:64686735-64686754 None:intergenic 55.0%
TTCACGGCGACGGCAAGAAA+GGG - chr3_4:64686747-64686766 None:intergenic 55.0%
TTTCACGGCGACGGCAAGAA+AGG - chr3_4:64686748-64686767 None:intergenic 55.0%
ACCTGAGATATGTTCCGGCG+TGG - chr3_4:64686791-64686810 None:intergenic 55.0%
GTCATTCTTGGGGTCACGGA+AGG + chr3_4:64687481-64687500 Msa0514040:CDS 55.0%
TCCTCTCACGAACAACGTGG+GGG - chr3_4:64687689-64687708 None:intergenic 55.0%
CTCCTCTCACGAACAACGTG+GGG - chr3_4:64687690-64687709 None:intergenic 55.0%
CCTCCTCTCACGAACAACGT+GGG - chr3_4:64687691-64687710 None:intergenic 55.0%
TCCTCCTCTCACGAACAACG+TGG - chr3_4:64687692-64687711 None:intergenic 55.0%
AGCGTGAGCATGCGAAAAGG+CGG + chr3_4:64687844-64687863 Msa0514040:CDS 55.0%
CTGATGAGCTGAAACGGGCA+GGG + chr3_4:64687991-64688010 Msa0514040:CDS 55.0%
! AGCTGAAACGGGCAGGGTTT+TGG + chr3_4:64687997-64688016 Msa0514040:CDS 55.0%
! GCTGAAACGGGCAGGGTTTT+GGG + chr3_4:64687998-64688017 Msa0514040:CDS 55.0%
GTTAGATAGGCCGCAAGCTG+CGG + chr3_4:64688031-64688050 Msa0514040:CDS 55.0%
GGCGAAGAAGGAGGCTGTAT+CGG + chr3_4:64688268-64688287 Msa0514040:CDS 55.0%
!! GAAGGAGGCTGTATCGGTTG+TGG + chr3_4:64688274-64688293 Msa0514040:CDS 55.0%
AGGATGACAGAGGTCCTTGG+TGG + chr3_4:64688450-64688469 Msa0514040:CDS 55.0%
GGCGGAGAGAATGAAGGTGA+GGG - chr3_4:64686717-64686736 None:intergenic 55.0%
TCTCACGGCGGAGAGAATGA+AGG - chr3_4:64686723-64686742 None:intergenic 55.0%
GCAAGAAAGGGATCTCACGG+CGG - chr3_4:64686735-64686754 None:intergenic 55.0%
TTCACGGCGACGGCAAGAAA+GGG - chr3_4:64686747-64686766 None:intergenic 55.0%
TTTCACGGCGACGGCAAGAA+AGG - chr3_4:64686748-64686767 None:intergenic 55.0%
ACCTGAGATATGTTCCGGCG+TGG - chr3_4:64686791-64686810 None:intergenic 55.0%
GTCATTCTTGGGGTCACGGA+AGG + chr3_4:64687481-64687500 Msa0514040:CDS 55.0%
TCCTCTCACGAACAACGTGG+GGG - chr3_4:64687689-64687708 None:intergenic 55.0%
CTCCTCTCACGAACAACGTG+GGG - chr3_4:64687690-64687709 None:intergenic 55.0%
CCTCCTCTCACGAACAACGT+GGG - chr3_4:64687691-64687710 None:intergenic 55.0%
TCCTCCTCTCACGAACAACG+TGG - chr3_4:64687692-64687711 None:intergenic 55.0%
AGCGTGAGCATGCGAAAAGG+CGG + chr3_4:64687844-64687863 Msa0514040:CDS 55.0%
CTGATGAGCTGAAACGGGCA+GGG + chr3_4:64687991-64688010 Msa0514040:CDS 55.0%
! AGCTGAAACGGGCAGGGTTT+TGG + chr3_4:64687997-64688016 Msa0514040:CDS 55.0%
! GCTGAAACGGGCAGGGTTTT+GGG + chr3_4:64687998-64688017 Msa0514040:CDS 55.0%
GTTAGATAGGCCGCAAGCTG+CGG + chr3_4:64688031-64688050 Msa0514040:CDS 55.0%
GGCGAAGAAGGAGGCTGTAT+CGG + chr3_4:64688268-64688287 Msa0514040:CDS 55.0%
!! GAAGGAGGCTGTATCGGTTG+TGG + chr3_4:64688274-64688293 Msa0514040:CDS 55.0%
AGGATGACAGAGGTCCTTGG+TGG + chr3_4:64688450-64688469 Msa0514040:CDS 55.0%
CGGCGGAGAGAATGAAGGTG+AGG - chr3_4:64686718-64686737 None:intergenic 60.0%
GCCACGCCGGAACATATCTC+AGG + chr3_4:64686787-64686806 Msa0514040:five_prime_UTR 60.0%
TCCCCCACGTTGTTCGTGAG+AGG + chr3_4:64687685-64687704 Msa0514040:CDS 60.0%
CCCACGTTGTTCGTGAGAGG+AGG + chr3_4:64687688-64687707 Msa0514040:CDS 60.0%
GCTGATGAGCTGAAACGGGC+AGG + chr3_4:64687990-64688009 Msa0514040:CDS 60.0%
GATGGGGAAGGCGAAGAAGG+AGG + chr3_4:64688259-64688278 Msa0514040:CDS 60.0%
CGGCGGAGAGAATGAAGGTG+AGG - chr3_4:64686718-64686737 None:intergenic 60.0%
GCCACGCCGGAACATATCTC+AGG + chr3_4:64686787-64686806 Msa0514040:five_prime_UTR 60.0%
TCCCCCACGTTGTTCGTGAG+AGG + chr3_4:64687685-64687704 Msa0514040:CDS 60.0%
CCCACGTTGTTCGTGAGAGG+AGG + chr3_4:64687688-64687707 Msa0514040:CDS 60.0%
GCTGATGAGCTGAAACGGGC+AGG + chr3_4:64687990-64688009 Msa0514040:CDS 60.0%
GATGGGGAAGGCGAAGAAGG+AGG + chr3_4:64688259-64688278 Msa0514040:CDS 60.0%
CGTTGTTGCTGTCGCCACGC+CGG + chr3_4:64686774-64686793 Msa0514040:five_prime_UTR 65.0%
CGTTGTTGCTGTCGCCACGC+CGG + chr3_4:64686774-64686793 Msa0514040:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 64686416 64688750 64686416 ID=Msa0514040;Name=Msa0514040
chr3_4 mRNA 64686416 64688750 64686416 ID=Msa0514040-mRNA-1;Parent=Msa0514040;Name=Msa0514040-mRNA-1;_AED=0.10;_eAED=0.10;_QI=421|1|1|1|0.5|0.66|3|239|375
chr3_4 exon 64686416 64686808 64686416 ID=Msa0514040-mRNA-1:exon:16263;Parent=Msa0514040-mRNA-1
chr3_4 exon 64687251 64687308 64687251 ID=Msa0514040-mRNA-1:exon:16264;Parent=Msa0514040-mRNA-1
chr3_4 exon 64687414 64688750 64687414 ID=Msa0514040-mRNA-1:exon:16265;Parent=Msa0514040-mRNA-1
chr3_4 five_prime_UTR 64686416 64686808 64686416 ID=Msa0514040-mRNA-1:five_prime_utr;Parent=Msa0514040-mRNA-1
chr3_4 five_prime_UTR 64687251 64687278 64687251 ID=Msa0514040-mRNA-1:five_prime_utr;Parent=Msa0514040-mRNA-1
chr3_4 CDS 64687279 64687308 64687279 ID=Msa0514040-mRNA-1:cds;Parent=Msa0514040-mRNA-1
chr3_4 CDS 64687414 64688511 64687414 ID=Msa0514040-mRNA-1:cds;Parent=Msa0514040-mRNA-1
chr3_4 three_prime_UTR 64688512 64688750 64688512 ID=Msa0514040-mRNA-1:three_prime_utr;Parent=Msa0514040-mRNA-1
Gene Sequence

>Msa0514040

ATGCTCTTATCTCCATGTTTAGAAAAATTGTTCCGTAGAATATTCTACACAATAGAAGCCACTGGCATTCAAACATTTGTTGCCTTGAGACGACACTGTCATTCTTGGGGTCACGGAAGGATTTCAGATAAAAATCCGAATGAGAAGCTATGTAGAGTAGGGCTGTTCTGGGACTTAGACAACAAACCACCCAATTCAATCCCACCTTATGAAGTTGCCAATAAGCTCAGAATAGCTGCAGCTTCTTTTGGAGTTGTTCGACATATGGTGGCTTATGCAAATAGCCACACTTTTAGCAATGTCCCCCACGTTGTTCGTGAGAGGAGGAAAGAACAGGAACTGTTGTATCGTTTGGAGGATAAGGGTGTGATTAAGCGTAATGAGCCTCATGTTTGTCGTGTTTGTGGGAGGAAATTTTACACGAATGAAAAGCTTGTTAATCATTTCAAGCAATTGCATGAGCGTGAGCATGCGAAAAGGCGGAATCAGATAGAATCGGCTAGAGGGAGTAGAAAGGTGAAATTGGTGGGTAAGTATGCTATGAAAATGGAAAAGTATAAGAAGGCTGCAAGTGCTGTTTTGACTCCTAAAGTTGGGTATGGTTTGGCTGATGAGCTGAAACGGGCAGGGTTTTGGGTTCAAACTGTGTTAGATAGGCCGCAAGCTGCGGATATTGCATTGCAAAAGCATATGGTGGATATGATGGATCATAGGCGGGTTGAGTGTTTGGTTCTTGTATCGGATGATTCTGATTTTGTCGATGTTATGAAGGAAGCAAAGCTACGGTGTCTCAAGACTGTTGTTATTGGGGATTTTAGCAGTGATGGAGTCTTGAAAAGGACTGCCGATACTGCTTTTTCTTGGGAGGATATTTTGATGGGGAAGGCGAAGAAGGAGGCTGTATCGGTTGTGGAAAACTGGAAAGATCGTGATATATTGAAAAGATTGGAGTGGACATATAACCCAGAAGTGGATAAAAAGAAACACAACTTGGATGATGCAGTTCCTAAAACATCTGGAGTTGATGATATTGAAAATATTTGTGATCATATTGATGATGACTACAAGGATGACAGAGGTCCTTGGTGGAAATTAGACTCCGATGATAATGGTGTTGCAAATCGATAA
Protein sequence

>Msa0514040

MLLSPCLEKLFRRIFYTIEATGIQTFVALRRHCHSWGHGRISDKNPNEKLCRVGLFWDLDNKPPNSIPPYEVANKLRIAAASFGVVRHMVAYANSHTFSNVPHVVRERRKEQELLYRLEDKGVIKRNEPHVCRVCGRKFYTNEKLVNHFKQLHEREHAKRRNQIESARGSRKVKLVGKYAMKMEKYKKAASAVLTPKVGYGLADELKRAGFWVQTVLDRPQAADIALQKHMVDMMDHRRVECLVLVSDDSDFVDVMKEAKLRCLKTVVIGDFSSDGVLKRTADTAFSWEDILMGKAKKEAVSVVENWKDRDILKRLEWTYNPEVDKKKHNLDDAVPKTSGVDDIENICDHIDDDYKDDRGPWWKLDSDDNGVANR*