AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0515320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0515320 MtrunA17_Chr3g0124441 92.006 713 23 2 1 710 1 682 0.0 1149
Msa0515320 MtrunA17_Chr8g0382801 52.934 784 268 12 5 714 3 759 0.0 680
Msa0515320 MtrunA17_Chr3g0124551 96.262 214 8 0 714 927 112 325 2.48e-150 446
Msa0515320 MtrunA17_Chr4g0063131 29.858 211 97 8 724 927 146 312 3.30e-16 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0515320 AT2G22120.2 82.710 214 37 0 714 927 111 324 1.87e-121 374
Msa0515320 AT2G22120.1 82.710 214 37 0 714 927 111 324 6.15e-121 370
Msa0515320 AT4G39680.2 52.792 394 146 16 221 607 181 541 2.22e-95 314
Msa0515320 AT4G39680.1 52.792 394 146 16 221 607 181 541 2.22e-95 314
Msa0515320 AT1G11020.1 32.227 211 92 8 724 927 155 321 5.09e-17 83.6
Msa0515320 AT1G50440.3 41.667 84 37 2 843 926 178 249 2.42e-11 65.5
Msa0515320 AT1G50440.1 41.667 84 37 2 843 926 178 249 2.42e-11 65.5
Msa0515320 AT1G50440.2 41.667 84 37 2 843 926 178 249 2.42e-11 65.5

Find 303 sgRNAs with CRISPR-Local

Find 510 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGCCTTGCTTGGCCTTTC+TGG -0.016773 3_4:+66544890 Msa0515320:CDS
CTGGGAGTGTTAGCAGTTTC+TGG 0.170355 3_4:+66543618 Msa0515320:CDS
TATTACCTCACTGGCATATT+TGG 0.173606 3_4:+66544597 Msa0515320:CDS
GAATTCAAAATACCCGATTT+TGG 0.184842 3_4:+66541456 Msa0515320:CDS
CATAATGGCTTTGATTGTTC+TGG 0.199353 3_4:+66545725 Msa0515320:CDS
CATAGCAATGAGTCTTTATT+TGG 0.236331 3_4:-66543646 None:intergenic
GGTGGTTGTTTGGGAGGTGC+TGG 0.240913 3_4:+66545678 Msa0515320:CDS
CAAGAACTTCTTGGGAAAAC+TGG 0.251963 3_4:+66543599 Msa0515320:CDS
CCCTCGGCAGCCTCCTGTTC+GGG 0.257259 3_4:-66541658 None:intergenic
TAGATGGTTACCAGCAAAAT+TGG 0.258741 3_4:+66544629 Msa0515320:CDS
TTGGGAGGTGCTGGGGAAGC+AGG 0.268603 3_4:+66545687 Msa0515320:CDS
TTTAAGGGAGTGTGTGAAAT+TGG 0.270889 3_4:-66540813 None:intergenic
AGCGAAGGTTCCAGAGGTTT+TGG 0.282002 3_4:+66541825 Msa0515320:CDS
GTATACTAATGTAAAGAAAA+TGG 0.288180 3_4:+66546973 Msa0515320:three_prime_UTR
TTCTTCTCCAATTAGGGTTT+CGG 0.291302 3_4:+66541048 Msa0515320:five_prime_UTR
TGAGAATAACGAAGTCCTTA+TGG 0.301369 3_4:+66542653 Msa0515320:CDS
ACTATCACATACTTGCTAAA+AGG 0.302128 3_4:+66545823 Msa0515320:CDS
TTGCCTTGCTTGGCCTTTCT+GGG 0.302492 3_4:+66544891 Msa0515320:CDS
ATAAACAGGTACATCATTTC+TGG 0.306306 3_4:-66542397 None:intergenic
TTGTATACCGAAACCCTAAT+TGG 0.307010 3_4:-66541055 None:intergenic
TGCTGAGGCTGCCCGCAAAA+AGG 0.311243 3_4:+66541612 Msa0515320:CDS
GTGGTTGTTTGGGAGGTGCT+GGG 0.315040 3_4:+66545679 Msa0515320:CDS
AATTGTTGAACATGCTCAAT+TGG 0.315543 3_4:-66546730 None:intergenic
TGCTTTGCTCCTTCCCCATA+AGG 0.325723 3_4:-66542668 None:intergenic
ACACCATCTCCCACAACTAT+TGG 0.328086 3_4:-66542693 None:intergenic
CTTACCAATGGTGGCGGAGG+TGG 0.329485 3_4:-66544035 None:intergenic
CCCTACATCATCACTACTAT+TGG 0.332269 3_4:-66542517 None:intergenic
TCTGAGGTCAACCCTAGTTT+AGG 0.334538 3_4:+66542234 Msa0515320:CDS
GGAAGATTTAATTAATCGTT+TGG 0.334990 3_4:+66541561 Msa0515320:CDS
CTTGGGTGTAGTAGCAGATC+TGG 0.336436 3_4:-66542990 None:intergenic
CAGTGTATTGGTGGCAACTA+TGG 0.337443 3_4:+66545776 Msa0515320:CDS
CAGAGTAATTTGCCCGTCCT+TGG 0.338682 3_4:-66543008 None:intergenic
CTATGGTGGGTCAACGGATA+TGG 0.338754 3_4:+66545793 Msa0515320:CDS
AAAGCTGTGCAAGAACTTCT+TGG 0.344461 3_4:+66543590 Msa0515320:CDS
CTTTGTGTCAGACTCCAGTT+GGG 0.346305 3_4:-66542160 None:intergenic
TATTTGGTTTATCTAATAGA+TGG 0.346647 3_4:+66544613 Msa0515320:CDS
ACAGAATGTGGTGGTTGTTT+GGG 0.350267 3_4:+66545669 Msa0515320:CDS
ACCCTCGGCAGCCTCCTGTT+CGG 0.353782 3_4:-66541659 None:intergenic
AAAATTGGCTTCGTATTCTC+TGG 0.357685 3_4:+66544644 Msa0515320:CDS
ACACTATTATTAGCGTCAAC+TGG 0.358153 3_4:-66541892 None:intergenic
AACAGAATGTGGTGGTTGTT+TGG 0.360278 3_4:+66545668 Msa0515320:CDS
TAAATCTTCCTTCAAACCTT+TGG 0.362159 3_4:-66541548 None:intergenic
GTTACAGAACAAACATTAGT+TGG 0.364404 3_4:+66542890 Msa0515320:intron
TGGAACACTGAGGCAGTTAA+AGG 0.365058 3_4:+66542944 Msa0515320:CDS
TGCCAGGCACTCTTTGTTTG+TGG 0.365795 3_4:+66545604 Msa0515320:CDS
TGCTGCGAAACTTGCGGCTC+AGG 0.367848 3_4:+66544205 Msa0515320:CDS
GCTACCATTACTATTCATAA+TGG 0.370651 3_4:+66545710 Msa0515320:CDS
GGTGGTGCGGGAGGAACTAT+TGG 0.370795 3_4:-66543951 None:intergenic
GCTTTGTGTCAGACTCCAGT+TGG 0.374269 3_4:-66542161 None:intergenic
GGCGGAGGTGGGAGAGTGAC+TGG 0.377606 3_4:-66544023 None:intergenic
TTTCAGGAGTAAATCAATTT+GGG 0.379242 3_4:+66540953 Msa0515320:five_prime_UTR
GATGGTTCTTCCACCATCTC+TGG 0.383860 3_4:-66542372 None:intergenic
GTGAACTTGGACAGAAGTTC+TGG 0.384507 3_4:+66542552 Msa0515320:CDS
AAGAGCCGCCCACCATTTGT+AGG 0.386711 3_4:-66543846 None:intergenic
CACGGCATTTCGTGTTTCAA+TGG 0.387909 3_4:-66543808 None:intergenic
AAGTTCTGGTGATGATTCTA+TGG 0.388224 3_4:+66542566 Msa0515320:CDS
ATAGGCTTATCATCCAAAAT+CGG 0.388230 3_4:-66541469 None:intergenic
TCGAAGAGTTCGCAATGATT+TGG 0.388817 3_4:+66544934 Msa0515320:CDS
ATAATGGCTTTGATTGTTCT+GGG 0.389717 3_4:+66545726 Msa0515320:CDS
GGCTGTGAAGAGGGTGGTGC+GGG 0.392874 3_4:-66543963 None:intergenic
AACTTACCAATGCGTTCTTT+AGG 0.395175 3_4:-66543076 None:intergenic
GGCCTTACCAATGGTGGCGG+AGG 0.397144 3_4:-66544038 None:intergenic
GAGAATAACGAAGTCCTTAT+GGG 0.399353 3_4:+66542654 Msa0515320:CDS
TGTCTTTGTTGCTGTCAACC+TGG 0.404337 3_4:+66544977 Msa0515320:CDS
CTCACAGTGATGATAATTTG+TGG 0.408800 3_4:-66541101 None:intergenic
TACAATTCAAGCTTCTGAAC+AGG 0.411244 3_4:+66541762 Msa0515320:CDS
ACCCCATCCGGTATTACTTC+AGG 0.419215 3_4:+66540692 Msa0515320:five_prime_UTR
GAAGGATGAGGTTAACGGTT+TGG 0.423362 3_4:+66541687 Msa0515320:CDS
AATTAGAACAAGATAATGTT+AGG 0.425889 3_4:+66542349 Msa0515320:CDS
AGCTTTGAGTGCATCTTGGC+TGG 0.426109 3_4:+66544330 Msa0515320:CDS
TGAGGAATCAAAGGCGCAGC+TGG 0.428428 3_4:+66542119 Msa0515320:CDS
GTTCAACAATTGAAAACATT+GGG 0.429700 3_4:+66546742 Msa0515320:CDS
AGAGTAATTTGCCCGTCCTT+GGG 0.433727 3_4:-66543007 None:intergenic
TGCTGACGAGGGGAAGCCTC+TGG 0.436452 3_4:-66543984 None:intergenic
CAGTACTAATGTTCATATCT+TGG 0.439698 3_4:-66542740 None:intergenic
ATAGGTGGGTCCACTTTCTC+AGG 0.440175 3_4:-66544104 None:intergenic
GGTACATCATTTCTGGATGA+TGG 0.441841 3_4:-66542390 None:intergenic
CTCTGAAGCGCAACTTATCT+AGG 0.442652 3_4:+66543026 Msa0515320:CDS
TGGGAGGTGCTGGGGAAGCA+GGG 0.446534 3_4:+66545688 Msa0515320:CDS
GAAGCCTCTGGCTGTGAAGA+GGG 0.449251 3_4:-66543972 None:intergenic
TTTACTTGAGTCCCTAAACT+AGG 0.450386 3_4:-66542246 None:intergenic
TGAGAAGAATAATGAGGATT+CGG 0.450419 3_4:+66542080 Msa0515320:CDS
GAATGTGATTCATCATAAAC+AGG 0.451211 3_4:-66542411 None:intergenic
ACCACCCCTTCCTGAGAAAG+TGG 0.451879 3_4:+66544094 Msa0515320:CDS
AGCGTCCACATTAATAGTCT+TGG 0.452623 3_4:-66541737 None:intergenic
TTACAGAACAAACATTAGTT+GGG 0.454047 3_4:+66542891 Msa0515320:intron
GAGAGATGACAGGGTCTGAT+TGG 0.454470 3_4:+66546692 Msa0515320:CDS
AAGCTGTGCAAGAACTTCTT+GGG 0.454538 3_4:+66543591 Msa0515320:CDS
TGGAAGCTTTGAGTGCATCT+TGG 0.454778 3_4:+66544326 Msa0515320:CDS
TGAGGACTCAAAGCCCCAAC+TGG 0.455376 3_4:+66542146 Msa0515320:CDS
CAGCCTCCCTTTCCTCGCGA+AGG 0.456940 3_4:-66541591 None:intergenic
CTGAGGTCAACCCTAGTTTA+GGG 0.458273 3_4:+66542235 Msa0515320:CDS
TAAAGGGAAGAATGAGAAAA+CGG 0.458306 3_4:-66540872 None:intergenic
ATTGTTGAACATGCTCAATT+GGG 0.459333 3_4:-66546729 None:intergenic
TCAGGAAGGGGTGGTGGCGA+TGG 0.460747 3_4:-66544086 None:intergenic
AGCCTCCCTTTCCTCGCGAA+GGG 0.462954 3_4:-66541590 None:intergenic
ACATTGTAAACAGAATATAA+TGG 0.464371 3_4:-66541429 None:intergenic
ACATGCTCAATTGGGAGGGC+TGG 0.464574 3_4:-66546721 None:intergenic
GGCGTTCCCTAGCAACTGGT+GGG 0.468982 3_4:-66544061 None:intergenic
TCGAAGAAGGATGAGGTTAA+CGG 0.469940 3_4:+66541682 Msa0515320:CDS
GCTTCTGAACAGGGGAATAG+TGG 0.471998 3_4:+66541772 Msa0515320:CDS
TGGGTCCACTTTCTCAGGAA+GGG 0.472429 3_4:-66544099 None:intergenic
CCCCGAACAGGAGGCTGCCG+AGG 0.472526 3_4:+66541657 Msa0515320:CDS
ACAGTGGTCTCCACATTAGA+AGG 0.475659 3_4:-66541982 None:intergenic
GCTACATTATCCGTTTCAAA+TGG 0.478028 3_4:-66541805 None:intergenic
GGAACAATGAGCCTGCAAAA+AGG 0.478412 3_4:+66542912 Msa0515320:CDS
TGGTTGTTTGGGAGGTGCTG+GGG 0.478836 3_4:+66545680 Msa0515320:CDS
AGGCTTCCCCTCGTCAGCAC+AGG 0.479056 3_4:+66543988 Msa0515320:CDS
AGAAGTAGTAGTCGGCGGTC+AGG 0.480420 3_4:+66542044 Msa0515320:CDS
CCTCGGCAGCCTCCTGTTCG+GGG 0.481454 3_4:-66541657 None:intergenic
GAAGGGGTGGTGGCGATGGA+AGG 0.486557 3_4:-66544082 None:intergenic
GACTCATTCAAACTCATAAG+AGG 0.486898 3_4:-66546765 None:intergenic
CACCTCCGCCACCATTGGTA+AGG 0.487137 3_4:+66544036 Msa0515320:CDS
CGAGGAAAGGGAGGCTGCTG+AGG 0.487534 3_4:+66541597 Msa0515320:CDS
TGAAGCCCTTCGCGAGGAAA+GGG 0.488032 3_4:+66541585 Msa0515320:CDS
GTCCACAAACAAAGAGTGCC+TGG 0.491072 3_4:-66545606 None:intergenic
GGAAGGCGTTCCCTAGCAAC+TGG 0.491793 3_4:-66544065 None:intergenic
GTCTTTGTTGCTGTCAACCT+GGG 0.492579 3_4:+66544978 Msa0515320:CDS
GCATTCGATTTCGTTGTTCG+TGG 0.495776 3_4:+66540977 Msa0515320:five_prime_UTR
TGTGCTGACTGTCATTTGCC+AGG 0.495824 3_4:+66545588 Msa0515320:CDS
AAATTGGCTTCGTATTCTCT+GGG 0.495827 3_4:+66544645 Msa0515320:CDS
GTTGGCTACCAAAGGTTTGA+AGG 0.496253 3_4:+66541540 Msa0515320:CDS
CGTTCCCTAGCAACTGGTGG+GGG 0.497494 3_4:-66544059 None:intergenic
GAGGATTCGGCAATCAAGCT+AGG 0.498337 3_4:+66542093 Msa0515320:CDS
AGATCATCCAGAGTGACAAT+AGG 0.498410 3_4:-66544122 None:intergenic
CGGTATTAAGAATGTTGACC+AGG 0.498907 3_4:+66541855 Msa0515320:CDS
CACTATTATTAGCGTCAACT+GGG 0.501134 3_4:-66541891 None:intergenic
TGTTCAACAATTGAAAACAT+TGG 0.502580 3_4:+66546741 Msa0515320:CDS
AAGAAAACGATTACCGAAGA+TGG 0.503792 3_4:-66541030 None:intergenic
CTCATCCTTCTTCGAACCCT+CGG 0.504768 3_4:-66541674 None:intergenic
GGAACTGAAAAGAAGGAAGT+TGG 0.504901 3_4:+66541522 Msa0515320:CDS
TGTTTCAATGGCCTCTTCAG+TGG 0.506075 3_4:-66543796 None:intergenic
GTGTCAGCAATGGATCTAGA+AGG 0.506477 3_4:+66541913 Msa0515320:CDS
TTACCAATGGTGGCGGAGGT+GGG 0.506883 3_4:-66544034 None:intergenic
CCGTCATTATCCAAAACCTC+TGG 0.507635 3_4:-66541835 None:intergenic
TATGCAGATTATTACCTCAC+TGG 0.509216 3_4:+66544588 Msa0515320:intron
AGGCGTTCCCTAGCAACTGG+TGG 0.509948 3_4:-66544062 None:intergenic
GAGTGTTAGCAGTTTCTGGA+TGG 0.513312 3_4:+66543622 Msa0515320:CDS
ACTTTCTCAGGAAGGGGTGG+TGG 0.513958 3_4:-66544092 None:intergenic
TAGGCTTATCATCCAAAATC+GGG 0.516136 3_4:-66541468 None:intergenic
TACTAATGTTCATATCTTGG+TGG 0.517265 3_4:-66542737 None:intergenic
GTATCCAGAAAAGGTGAACT+TGG 0.517578 3_4:+66542539 Msa0515320:CDS
TAATCAAAAGAATGAACTAA+AGG 0.518236 3_4:+66542302 Msa0515320:CDS
CTCTTCCGCTCCAGAAAACC+AGG 0.518365 3_4:+66542209 Msa0515320:CDS
ACTGAGAAGCGAAAGTATCC+TGG 0.519561 3_4:+66542771 Msa0515320:CDS
TGGTGATGATTCTATGGAAG+AGG 0.520169 3_4:+66542572 Msa0515320:CDS
TGTGAAGAGGGTGGTGCGGG+AGG 0.521080 3_4:-66543960 None:intergenic
TGAAAGAGGAACTGAAAAGA+AGG 0.524744 3_4:+66541515 Msa0515320:CDS
GGGTCCACTTTCTCAGGAAG+GGG 0.524988 3_4:-66544098 None:intergenic
TTTGTTGCGGCTCTTCGAGA+TGG 0.525532 3_4:-66543527 None:intergenic
TCTCCCACCTCCGCCACCAT+TGG 0.525575 3_4:+66544031 Msa0515320:CDS
TCCACTTTCTCAGGAAGGGG+TGG 0.525720 3_4:-66544095 None:intergenic
GTTGCGGCTCTTCGAGATGG+TGG 0.526210 3_4:-66543524 None:intergenic
GAATCATATTGCCTAATCTC+AGG 0.527927 3_4:-66542600 None:intergenic
GGCTGCCGAGGGTTCGAAGA+AGG 0.528303 3_4:+66541669 Msa0515320:CDS
AGCGGAAACGAGACCCCATC+CGG 0.530223 3_4:+66540680 None:intergenic
TGCCTTACCTGAAGTAATAC+CGG 0.531128 3_4:-66540699 None:intergenic
TTGCAATGGCCTACAAATGG+TGG 0.532540 3_4:+66543837 Msa0515320:CDS
TAATGTGGAGACCACTGTTA+CGG 0.532655 3_4:+66541987 Msa0515320:CDS
TGTAGTTGAACCATTTGAAA+CGG 0.534749 3_4:+66541795 Msa0515320:CDS
AAGAACTTCTTGGGAAAACT+GGG 0.535487 3_4:+66543600 Msa0515320:CDS
TGGCTGTGAAGAGGGTGGTG+CGG 0.535809 3_4:-66543964 None:intergenic
ATGAAGCCCTTCGCGAGGAA+AGG 0.536573 3_4:+66541584 Msa0515320:CDS
AAGTAATGAAGCACCCAGAA+AGG 0.537570 3_4:-66544904 None:intergenic
ATCCGGTATTACTTCAGGTA+AGG 0.537588 3_4:+66540697 Msa0515320:five_prime_UTR
TGGTCTCCACATTAGAAGGA+TGG 0.538909 3_4:-66541978 None:intergenic
ACCACCACATTCTGTTGCCA+TGG 0.539867 3_4:-66545661 None:intergenic
GTGGGTATCACTATTTCTTG+CGG 0.539926 3_4:-66542718 None:intergenic
GATGTCGATGGAGAGATGAC+AGG 0.540296 3_4:+66546682 Msa0515320:CDS
ATCTGCTAACGCGGGAGAGG+AGG 0.540755 3_4:+66541948 Msa0515320:CDS
CAAAGACATAATTCTCTACA+AGG 0.540904 3_4:-66544962 None:intergenic
GGCAATCAAGCTAGGGAATG+AGG 0.543052 3_4:+66542101 Msa0515320:CDS
TTGGGTGTAGTAGCAGATCT+GGG 0.544644 3_4:-66542989 None:intergenic
CCCGAACAGGAGGCTGCCGA+GGG 0.546318 3_4:+66541658 Msa0515320:CDS
AAACCAATAGTTGTGGGAGA+TGG 0.546559 3_4:+66542690 Msa0515320:CDS
GTAACCTTCCACTTATCGAT+AGG 0.547256 3_4:-66541487 None:intergenic
ATACTTTCGCTTCTCAGTCA+AGG 0.548675 3_4:-66542766 None:intergenic
AATTTGCAATGGCCTACAAA+TGG 0.549283 3_4:+66543834 Msa0515320:CDS
TGCTCAATTGGGAGGGCTGG+AGG 0.549699 3_4:-66546718 None:intergenic
GGAATCTGCTAACGCGGGAG+AGG 0.550865 3_4:+66541945 Msa0515320:CDS
CAGCTTACGAAAACAAAGGT+AGG 0.551469 3_4:-66546831 None:intergenic
TGATGTAGGGTATCCAGAAA+AGG 0.551852 3_4:+66542530 Msa0515320:CDS
CAAAGCAAACCAATAGTTGT+GGG 0.552253 3_4:+66542684 Msa0515320:CDS
TTACTTGAGTCCCTAAACTA+GGG 0.552576 3_4:-66542245 None:intergenic
GTGGGTCCACTTTCTCAGGA+AGG 0.554750 3_4:-66544100 None:intergenic
GGACCCACCTATTGTCACTC+TGG 0.556935 3_4:+66544115 Msa0515320:CDS
CCAATAGTAGTGATGATGTA+GGG 0.556968 3_4:+66542517 Msa0515320:CDS
CGAGGGTTCGAAGAAGGATG+AGG 0.558391 3_4:+66541675 Msa0515320:CDS
TAATGTTAGGCCAGAGATGG+TGG 0.559342 3_4:+66542362 Msa0515320:CDS
AGAAGGAAGTTGGCTACCAA+AGG 0.560091 3_4:+66541532 Msa0515320:CDS
AAAGGAACAGGAGGCTGCTG+AGG 0.560111 3_4:+66541630 Msa0515320:CDS
TAATGTAAAGAAAATGGAAG+AGG 0.560828 3_4:+66546979 Msa0515320:three_prime_UTR
AAAGCCATTATGAATAGTAA+TGG 0.561026 3_4:-66545714 None:intergenic
TACTTCTGTTGATACAGTCT+CGG 0.562363 3_4:-66542028 None:intergenic
GGTCTCCACATTAGAAGGAT+GGG 0.564973 3_4:-66541977 None:intergenic
GGCTTCCCCTCGTCAGCACA+GGG 0.565114 3_4:+66543989 Msa0515320:CDS
GCCTCTGGCTGTGAAGAGGG+TGG 0.565638 3_4:-66543969 None:intergenic
TAGTTCTGAGAAGAATAATG+AGG 0.566355 3_4:+66542074 Msa0515320:CDS
TCATCCAGAGTGACAATAGG+TGG 0.568024 3_4:-66544119 None:intergenic
TGTGCTAGTTAGTGGTATTG+TGG 0.568574 3_4:+66544306 Msa0515320:intron
AAGAGGACTTGCCTGAGATT+AGG 0.569361 3_4:+66542589 Msa0515320:CDS
CTGGGTCAGTGACACCATCC+TGG 0.570143 3_4:-66541873 None:intergenic
TGTTGCTCCCTGTGCTGACG+AGG 0.570630 3_4:-66543996 None:intergenic
CTCGGCAGCCTCCTGTTCGG+GGG 0.570874 3_4:-66541656 None:intergenic
CACATTCAGTGGATGTTGGA+GGG 0.572068 3_4:+66542427 Msa0515320:CDS
GTAGGGCGAGTCTACTTCTA+CGG 0.572314 3_4:-66546813 None:intergenic
TCACATTCAGTGGATGTTGG+AGG 0.573323 3_4:+66542426 Msa0515320:CDS
TAGGGTTGACCTCAGATACC+TGG 0.573653 3_4:-66542227 None:intergenic
GCAGTACTCGTCCACTGAAG+AGG 0.574537 3_4:+66543785 Msa0515320:intron
GCTGCGAAACTTGCGGCTCA+GGG 0.574547 3_4:+66544206 Msa0515320:CDS
GCTAGGGAATGAGGAATCAA+AGG 0.575287 3_4:+66542110 Msa0515320:CDS
ACCACCCTCTTCACAGCCAG+AGG 0.575603 3_4:+66543968 Msa0515320:CDS
ACCAATAGTAGTGATGATGT+AGG 0.575706 3_4:+66542516 Msa0515320:CDS
GAATCACATTCAGTGGATGT+TGG 0.577134 3_4:+66542423 Msa0515320:CDS
ACTAATGTTCATATCTTGGT+GGG 0.577821 3_4:-66542736 None:intergenic
GGAAGCCTCTGGCTGTGAAG+AGG 0.578072 3_4:-66543973 None:intergenic
ACCTGAAGTAATACCGGATG+GGG 0.579679 3_4:-66540693 None:intergenic
GTTGAACATGCTCAATTGGG+AGG 0.580202 3_4:-66546726 None:intergenic
GCACCCAGAAAGGCCAAGCA+AGG 0.580394 3_4:-66544894 None:intergenic
CTGCTACTACACCCAAGGAC+GGG 0.581551 3_4:+66542996 Msa0515320:CDS
TGCTAAAAGGATGTTAACAA+AGG 0.581562 3_4:+66545836 Msa0515320:CDS
GAGCCGCAACAAATTCCCTC+AGG 0.582636 3_4:+66543537 Msa0515320:CDS
TGTATTGGTGGCAACTATGG+TGG 0.584245 3_4:+66545779 Msa0515320:CDS
ACAATTCAAGCTTCTGAACA+GGG 0.584680 3_4:+66541763 Msa0515320:CDS
ATGATAAGCCTATCGATAAG+TGG 0.585790 3_4:+66541479 Msa0515320:CDS
TACCTGAAGTAATACCGGAT+GGG 0.585974 3_4:-66540694 None:intergenic
GTCTGAATTCAGGTTAAGGA+AGG 0.587941 3_4:+66541398 Msa0515320:intron
ATTAAGAATGTTGACCAGGA+TGG 0.588968 3_4:+66541859 Msa0515320:CDS
GCGTTCCCTAGCAACTGGTG+GGG 0.589857 3_4:-66544060 None:intergenic
AATCCTGAGGGAATTTGTTG+CGG 0.590439 3_4:-66543540 None:intergenic
TAACGAAGTCCTTATGGGGA+AGG 0.590531 3_4:+66542659 Msa0515320:CDS
TTTGGATGAAGCCCTTCGCG+AGG 0.590917 3_4:+66541579 Msa0515320:CDS
GAAGGTTACAGAGCTGAAAG+AGG 0.592540 3_4:+66541501 Msa0515320:CDS
AGATAATGTTAGGCCAGAGA+TGG 0.592651 3_4:+66542359 Msa0515320:CDS
GCAAAGCAAACCAATAGTTG+TGG 0.593654 3_4:+66542683 Msa0515320:CDS
ATTGGAGCACTGTTGACAGC+AGG 0.595299 3_4:-66543933 None:intergenic
TCTGCTACTACACCCAAGGA+CGG 0.595573 3_4:+66542995 Msa0515320:CDS
TTGCTCCCTGTGCTGACGAG+GGG 0.600190 3_4:-66543994 None:intergenic
TGCAATGGCCTACAAATGGT+GGG 0.600370 3_4:+66543838 Msa0515320:CDS
GTAAAACCACTGCAACTCCT+CGG 0.602190 3_4:+66544150 Msa0515320:CDS
TAATAATAGTGTGTCAGCAA+TGG 0.604484 3_4:+66541903 Msa0515320:CDS
TATGTTGTTGAAGATGTCGA+TGG 0.604679 3_4:+66546670 Msa0515320:CDS
TTTGTGTCAGACTCCAGTTG+GGG 0.604893 3_4:-66542159 None:intergenic
GCACTGTTGACAGCAGGAGT+AGG 0.605864 3_4:-66543927 None:intergenic
AGCTTACGAAAACAAAGGTA+GGG 0.606339 3_4:-66546830 None:intergenic
AGGATTCGGCAATCAAGCTA+GGG 0.607162 3_4:+66542094 Msa0515320:CDS
TTATGATGAATCACATTCAG+TGG 0.607163 3_4:+66542416 Msa0515320:CDS
ATTGTTGAATTTCTGATACA+CGG 0.607708 3_4:+66546929 Msa0515320:three_prime_UTR
GAATGTGGTGGTTGTTTGGG+AGG 0.607809 3_4:+66545672 Msa0515320:CDS
TGGGCATGAGATCGTCACAT+GGG 0.608338 3_4:-66542185 None:intergenic
GTTGACAGCAGGAGTAGGAG+TGG 0.608389 3_4:-66543922 None:intergenic
ACAGCAGGAGTAGGAGTGGG+AGG 0.608778 3_4:-66543918 None:intergenic
TGAAACGGATAATGTAGCGA+AGG 0.611647 3_4:+66541810 Msa0515320:CDS
GGATCTAGAAGGTGAACATG+TGG 0.611667 3_4:+66541924 Msa0515320:CDS
TTGACAGCAGGAGTAGGAGT+GGG 0.613695 3_4:-66543921 None:intergenic
GATACACCTAAAGAACGCAT+TGG 0.616964 3_4:+66543070 Msa0515320:CDS
GGGCATGAGATCGTCACATG+GGG 0.621043 3_4:-66542184 None:intergenic
TGGCAACTATGGTGGGTCAA+CGG 0.621902 3_4:+66545787 Msa0515320:CDS
CTGAGCTTCTATTATATATG+CGG 0.622061 3_4:+66544682 Msa0515320:CDS
AAAGGCGCAGCTGGATAGTG+AGG 0.622347 3_4:+66542128 Msa0515320:CDS
TTACCTGAAGTAATACCGGA+TGG 0.623528 3_4:-66540695 None:intergenic
AGCCCTTCGCGAGGAAAGGG+AGG 0.624067 3_4:+66541588 Msa0515320:CDS
GTTGCTCCCTGTGCTGACGA+GGG 0.624628 3_4:-66543995 None:intergenic
ATGCCGTGTATAATTTGCAA+TGG 0.626656 3_4:+66543823 Msa0515320:CDS
CAGATCTGCTACTACACCCA+AGG 0.627800 3_4:+66542991 Msa0515320:CDS
AGTCTCGGTGACCACAGTCT+CGG 0.628272 3_4:-66542013 None:intergenic
TCCAGAAAACCAGGTATCTG+AGG 0.629250 3_4:+66542218 Msa0515320:CDS
TTGGGCATGAGATCGTCACA+TGG 0.630634 3_4:-66542186 None:intergenic
TGTTGCCCATCCTTCTAATG+TGG 0.635281 3_4:+66541972 Msa0515320:CDS
GCAAGTTGCTGCGAAACTTG+CGG 0.641051 3_4:+66544199 Msa0515320:CDS
TTGAACATGCTCAATTGGGA+GGG 0.643417 3_4:-66546725 None:intergenic
ATGTCGATGGAGAGATGACA+GGG 0.646001 3_4:+66546683 Msa0515320:CDS
AAGGAACTGATCAATCCTGA+GGG 0.646575 3_4:-66543552 None:intergenic
GCAACTTGCTCTTCTGACAA+AGG 0.648763 3_4:-66544185 None:intergenic
AAAGGTAAATAATAGATCCG+AGG 0.649093 3_4:-66544167 None:intergenic
ACATGTGGAATCTGCTAACG+CGG 0.649730 3_4:+66541939 Msa0515320:CDS
AGAATAACGAAGTCCTTATG+GGG 0.649980 3_4:+66542655 Msa0515320:CDS
TAAGCCTATCGATAAGTGGA+AGG 0.650725 3_4:+66541483 Msa0515320:CDS
TTTGGACACTCAAGTTGATG+AGG 0.650902 3_4:+66541705 Msa0515320:CDS
AGATTCCAAGACTATTAATG+TGG 0.651583 3_4:+66541732 Msa0515320:CDS
TAATGTAGCGAAGGTTCCAG+AGG 0.655550 3_4:+66541819 Msa0515320:CDS
TGTAATCAAACTGAATTGAG+CGG 0.656179 3_4:-66546901 None:intergenic
AAGACTATTAATGTGGACGC+TGG 0.657214 3_4:+66541739 Msa0515320:CDS
AATTGGCTTCGTATTCTCTG+GGG 0.662271 3_4:+66544646 Msa0515320:CDS
GTATCAACAGAAGTAGTAGT+CGG 0.662314 3_4:+66542036 Msa0515320:CDS
AGGCCATTGCAAATTATACA+CGG 0.662782 3_4:-66543826 None:intergenic
CATCCAGAGTGACAATAGGT+GGG 0.665205 3_4:-66544118 None:intergenic
GGAACCATGGCAACAGAATG+TGG 0.665999 3_4:+66545657 Msa0515320:CDS
GAAGGAACTGATCAATCCTG+AGG 0.672688 3_4:-66543553 None:intergenic
TGTTACGGTAACCGAGACTG+TGG 0.674195 3_4:+66542002 Msa0515320:CDS
AGAACAGCTTACGAAAACAA+AGG 0.678776 3_4:-66546835 None:intergenic
ATAGATCCGAGGAGTTGCAG+TGG 0.681963 3_4:-66544156 None:intergenic
CAATTCAAGCTTCTGAACAG+GGG 0.690052 3_4:+66541764 Msa0515320:CDS
CATGTGGAATCTGCTAACGC+GGG 0.690431 3_4:+66541940 Msa0515320:CDS
GTATTGGTGGCAACTATGGT+GGG 0.696502 3_4:+66545780 Msa0515320:CDS
GGCATGAGATCGTCACATGG+GGG 0.705286 3_4:-66542183 None:intergenic
ATAAACCAAATATGCCAGTG+AGG 0.716327 3_4:-66544602 None:intergenic
TCAACAGAAGTAGTAGTCGG+CGG 0.717128 3_4:+66542039 Msa0515320:CDS
GGAGAATCGAGAAAATTGCG+TGG 0.720279 3_4:-66541080 None:intergenic
AGTCTCGGTTACCGTAACAG+TGG 0.725404 3_4:-66541998 None:intergenic
AATGGCCTACAAATGGTGGG+CGG 0.733981 3_4:+66543841 Msa0515320:CDS
GCAACGCAGGTGGAACACTG+AGG 0.765183 3_4:+66542934 Msa0515320:CDS
ACCATGGCAACAGAATGTGG+TGG 0.804367 3_4:+66545660 Msa0515320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATACATATGTAAATAAAA+AGG - chr3_4:66541138-66541157 None:intergenic 10.0%
!!! AATTGTTATTTGAAATTATT+GGG + chr3_4:66541178-66541197 Msa0515320:intron 10.0%
!! AAAGTAAAATCTATAAAATA+AGG - chr3_4:66543432-66543451 None:intergenic 10.0%
!! AAATAAATAAATTAAAACCT+TGG - chr3_4:66545545-66545564 None:intergenic 10.0%
!!! TTTTTGTGTTTTGATTTTTA+GGG - chr3_4:66540747-66540766 None:intergenic 15.0%
!!! ATTTTTGTGTTTTGATTTTT+AGG - chr3_4:66540748-66540767 None:intergenic 15.0%
!! AACAATTGTTAATAATGAAA+TGG - chr3_4:66541165-66541184 None:intergenic 15.0%
!!! CAATTGTTATTTGAAATTAT+TGG + chr3_4:66541177-66541196 Msa0515320:intron 15.0%
!! AAATTCATTCAATAAAAACA+GGG - chr3_4:66541375-66541394 None:intergenic 15.0%
!! TAAATTCATTCAATAAAAAC+AGG - chr3_4:66541376-66541395 None:intergenic 15.0%
!!! ACATAAGATAAAAAGTATTT+CGG - chr3_4:66542817-66542836 None:intergenic 15.0%
!!! AAGTAATCTTCTATTTTTTT+TGG + chr3_4:66543758-66543777 Msa0515320:intron 15.0%
!! AAATCCTATATAATTAGTAA+AGG + chr3_4:66546014-66546033 Msa0515320:intron 15.0%
!! AATATTAATAATATCAGACA+GGG - chr3_4:66546249-66546268 None:intergenic 15.0%
!! AGAAAAAGATTGAGATTTAA+GGG - chr3_4:66540831-66540850 None:intergenic 20.0%
!!! ACAACCTTGTTATATTATTT+TGG - chr3_4:66541247-66541266 None:intergenic 20.0%
!! TTAAATTGAAAACAAACAAC+AGG - chr3_4:66541345-66541364 None:intergenic 20.0%
!! ACATTGTAAACAGAATATAA+TGG - chr3_4:66541432-66541451 None:intergenic 20.0%
!! TAATCAAAAGAATGAACTAA+AGG + chr3_4:66542302-66542321 Msa0515320:CDS 20.0%
!! AATTAGAACAAGATAATGTT+AGG + chr3_4:66542349-66542368 Msa0515320:CDS 20.0%
!! ATAAATGTAATAGCATACAT+TGG - chr3_4:66543720-66543739 None:intergenic 20.0%
!! TATATAGATTATCTGATTCA+GGG + chr3_4:66544551-66544570 Msa0515320:intron 20.0%
!!! TATTTGGTTTATCTAATAGA+TGG + chr3_4:66544613-66544632 Msa0515320:CDS 20.0%
!! ATATACAATATCATCATCAT+TGG - chr3_4:66545165-66545184 None:intergenic 20.0%
!!! AAGCACTTTTATATTTTGAA+GGG - chr3_4:66545279-66545298 None:intergenic 20.0%
!! ATTCTAAATAAACAAAGTGA+CGG - chr3_4:66545992-66546011 None:intergenic 20.0%
!! TCTACCTTTACTAATTATAT+AGG - chr3_4:66546021-66546040 None:intergenic 20.0%
!! GAATATTAATAATATCAGAC+AGG - chr3_4:66546250-66546269 None:intergenic 20.0%
!! TATCCTTAATAATAATTGCA+TGG + chr3_4:66546577-66546596 Msa0515320:intron 20.0%
!! GTATACTAATGTAAAGAAAA+TGG + chr3_4:66546973-66546992 Msa0515320:three_prime_UTR 20.0%
! GAGAAAAAGATTGAGATTTA+AGG - chr3_4:66540832-66540851 None:intergenic 25.0%
! ACGAAAAACGAGAAATTAAA+GGG - chr3_4:66540891-66540910 None:intergenic 25.0%
! AACGAAAAACGAGAAATTAA+AGG - chr3_4:66540892-66540911 None:intergenic 25.0%
!!! TTTTCAGGAGTAAATCAATT+TGG + chr3_4:66540952-66540971 Msa0515320:five_prime_UTR 25.0%
! TTTCAGGAGTAAATCAATTT+GGG + chr3_4:66540953-66540972 Msa0515320:five_prime_UTR 25.0%
! GTGACCAAAATAATATAACA+AGG + chr3_4:66541240-66541259 Msa0515320:intron 25.0%
!! ATAAATAATTTGTGTGTCCT+AGG + chr3_4:66541274-66541293 Msa0515320:intron 25.0%
! ATAAATGTGTAAAACAACCT+AGG - chr3_4:66541294-66541313 None:intergenic 25.0%
! TGAATTTAATGTCTGAATTC+AGG + chr3_4:66541388-66541407 Msa0515320:intron 25.0%
! GGAAGATTTAATTAATCGTT+TGG + chr3_4:66541561-66541580 Msa0515320:CDS 25.0%
! TAAAAAAATATATGCGTACC+AGG - chr3_4:66542792-66542811 None:intergenic 25.0%
! GCAAGAAAATATACAATGAT+TGG + chr3_4:66542860-66542879 Msa0515320:intron 25.0%
! TTACAGAACAAACATTAGTT+GGG + chr3_4:66542891-66542910 Msa0515320:intron 25.0%
! TGACATGGATATAAAAATTG+CGG + chr3_4:66543098-66543117 Msa0515320:intron 25.0%
!!! AGTAATACAACACTTGTTAT+AGG - chr3_4:66543147-66543166 None:intergenic 25.0%
! CTATTAAACAAATGAATTCC+TGG + chr3_4:66543203-66543222 Msa0515320:intron 25.0%
! TTAGTAAATGCATACAATCA+TGG - chr3_4:66543333-66543352 None:intergenic 25.0%
!! TATAGATTTTACTTTGTTGC+CGG + chr3_4:66543437-66543456 Msa0515320:intron 25.0%
! GTATATAGATTATCTGATTC+AGG + chr3_4:66544550-66544569 Msa0515320:intron 25.0%
! AGGTAATAATCTGCATAAAA+AGG - chr3_4:66544585-66544604 None:intergenic 25.0%
!! CTTATATGATATTCTTTTCC+AGG + chr3_4:66544738-66544757 Msa0515320:intron 25.0%
!! AACTGGTAACATTTTATATG+TGG - chr3_4:66544812-66544831 None:intergenic 25.0%
! TCAGTAATTCATAACAAAAC+TGG - chr3_4:66544829-66544848 None:intergenic 25.0%
! TGAATTACTGAATTTCATGT+TGG + chr3_4:66544838-66544857 Msa0515320:intron 25.0%
! AAGCAAGGCAAAAAATAATA+GGG - chr3_4:66544882-66544901 None:intergenic 25.0%
! TTATATATAATGGCAATACC+AGG + chr3_4:66545114-66545133 Msa0515320:intron 25.0%
!!! CAAGCACTTTTATATTTTGA+AGG - chr3_4:66545280-66545299 None:intergenic 25.0%
!!! GTCTATTTTGGTCTAAATTT+CGG + chr3_4:66545380-66545399 Msa0515320:intron 25.0%
! ACATAAATATAAAACTCAGC+TGG + chr3_4:66545435-66545454 Msa0515320:intron 25.0%
! AAAGCCATTATGAATAGTAA+TGG - chr3_4:66545717-66545736 None:intergenic 25.0%
!!! AAGTTTTTGATTGAGATTCT+TGG - chr3_4:66546045-66546064 None:intergenic 25.0%
!! ATTGAAAGGATATTTCTGAT+GGG + chr3_4:66546117-66546136 Msa0515320:intron 25.0%
! TATGTAATAAGGGGAAATTT+GGG - chr3_4:66546348-66546367 None:intergenic 25.0%
! TTTCGGATAGTATGTAATAA+GGG - chr3_4:66546358-66546377 None:intergenic 25.0%
! AAATCAACAATTCAAGACAA+TGG - chr3_4:66546620-66546639 None:intergenic 25.0%
! TGTTCAACAATTGAAAACAT+TGG + chr3_4:66546741-66546760 Msa0515320:CDS 25.0%
! GTTCAACAATTGAAAACATT+GGG + chr3_4:66546742-66546761 Msa0515320:CDS 25.0%
! ATTGTTGAATTTCTGATACA+CGG + chr3_4:66546929-66546948 Msa0515320:three_prime_UTR 25.0%
! TAATGTAAAGAAAATGGAAG+AGG + chr3_4:66546979-66546998 Msa0515320:three_prime_UTR 25.0%
!! GGTTTTGTGAAGATTTTCTA+GGG - chr3_4:66540795-66540814 None:intergenic 30.0%
!!! TGGTTTTGTGAAGATTTTCT+AGG - chr3_4:66540796-66540815 None:intergenic 30.0%
TAAAGGGAAGAATGAGAAAA+CGG - chr3_4:66540875-66540894 None:intergenic 30.0%
!! TTTTTCTGTTTCTCCATCTT+CGG + chr3_4:66541017-66541036 Msa0515320:five_prime_UTR 30.0%
! AATCGTTTTCTTCTCCAATT+AGG + chr3_4:66541041-66541060 Msa0515320:five_prime_UTR 30.0%
! ATCGTTTTCTTCTCCAATTA+GGG + chr3_4:66541042-66541061 Msa0515320:five_prime_UTR 30.0%
! TTGAAATTATTGGGTTGTCT+TGG + chr3_4:66541187-66541206 Msa0515320:intron 30.0%
CATTCAATAAAAACAGGGTT+CGG - chr3_4:66541370-66541389 None:intergenic 30.0%
! TAATGTCTGAATTCAGGTTA+AGG + chr3_4:66541394-66541413 Msa0515320:intron 30.0%
! GAATTCAAAATACCCGATTT+TGG + chr3_4:66541456-66541475 Msa0515320:CDS 30.0%
ATAGGCTTATCATCCAAAAT+CGG - chr3_4:66541472-66541491 None:intergenic 30.0%
TAAATCTTCCTTCAAACCTT+TGG - chr3_4:66541551-66541570 None:intergenic 30.0%
AGATTCCAAGACTATTAATG+TGG + chr3_4:66541732-66541751 Msa0515320:CDS 30.0%
TGTAGTTGAACCATTTGAAA+CGG + chr3_4:66541795-66541814 Msa0515320:CDS 30.0%
TAATAATAGTGTGTCAGCAA+TGG + chr3_4:66541903-66541922 Msa0515320:CDS 30.0%
!! TAGTTCTGAGAAGAATAATG+AGG + chr3_4:66542074-66542093 Msa0515320:CDS 30.0%
TGAGAAGAATAATGAGGATT+CGG + chr3_4:66542080-66542099 Msa0515320:CDS 30.0%
ATAAACAGGTACATCATTTC+TGG - chr3_4:66542400-66542419 None:intergenic 30.0%
GAATGTGATTCATCATAAAC+AGG - chr3_4:66542414-66542433 None:intergenic 30.0%
TTATGATGAATCACATTCAG+TGG + chr3_4:66542416-66542435 Msa0515320:CDS 30.0%
!!! TTGTTATTTTCTTCACCAGA+TGG - chr3_4:66542468-66542487 None:intergenic 30.0%
ACTAATGTTCATATCTTGGT+GGG - chr3_4:66542739-66542758 None:intergenic 30.0%
TACTAATGTTCATATCTTGG+TGG - chr3_4:66542740-66542759 None:intergenic 30.0%
CAGTACTAATGTTCATATCT+TGG - chr3_4:66542743-66542762 None:intergenic 30.0%
!!! ATGTTTTTTCTGTACGTACA+AGG + chr3_4:66542833-66542852 Msa0515320:intron 30.0%
!!! TGTTTTTTCTGTACGTACAA+GGG + chr3_4:66542834-66542853 Msa0515320:intron 30.0%
GTTACAGAACAAACATTAGT+TGG + chr3_4:66542890-66542909 Msa0515320:intron 30.0%
!! AACACTTGTTATAGGAGTAT+CGG - chr3_4:66543139-66543158 None:intergenic 30.0%
!! AATTCCTGGCACTTTAATTT+TGG + chr3_4:66543217-66543236 Msa0515320:intron 30.0%
! ATAGATTTTACTTTGTTGCC+GGG + chr3_4:66543438-66543457 Msa0515320:intron 30.0%
! TTGAGTCTAAACGTTTCTTT+TGG + chr3_4:66543496-66543515 Msa0515320:intron 30.0%
CATAGCAATGAGTCTTTATT+TGG - chr3_4:66543649-66543668 None:intergenic 30.0%
ACATTGGAATTTACAGTAAC+AGG - chr3_4:66543704-66543723 None:intergenic 30.0%
! AACTTCATTTTCACTTCTTC+AGG - chr3_4:66543891-66543910 None:intergenic 30.0%
AAAGGTAAATAATAGATCCG+AGG - chr3_4:66544170-66544189 None:intergenic 30.0%
CTGAGCTTCTATTATATATG+CGG + chr3_4:66544682-66544701 Msa0515320:CDS 30.0%
! GGTAACATTTTATATGTGGA+AGG - chr3_4:66544808-66544827 None:intergenic 30.0%
CAAGCAAGGCAAAAAATAAT+AGG - chr3_4:66544883-66544902 None:intergenic 30.0%
!!! CTATTATTTTTTGCCTTGCT+TGG + chr3_4:66544881-66544900 Msa0515320:CDS 30.0%
CAAAGACATAATTCTCTACA+AGG - chr3_4:66544965-66544984 None:intergenic 30.0%
!! TGTGTTTTTAACAGTGTCAA+AGG - chr3_4:66545033-66545052 None:intergenic 30.0%
ATTGCTTTAGCACAAAATAG+CGG + chr3_4:66545196-66545215 Msa0515320:intron 30.0%
! ACTGCACTTACATTTTGTAA+TGG + chr3_4:66545224-66545243 Msa0515320:intron 30.0%
! CTGCACTTACATTTTGTAAT+GGG + chr3_4:66545225-66545244 Msa0515320:intron 30.0%
TATTATGCCAGAACTATGAT+TGG + chr3_4:66545343-66545362 Msa0515320:intron 30.0%
!!! ATGGTATTTGGTGTCTATTT+TGG + chr3_4:66545368-66545387 Msa0515320:intron 30.0%
TATGTGATGCATCTTATTGT+TGG + chr3_4:66545479-66545498 Msa0515320:intron 30.0%
CTAATGATGATTAATGACCA+AGG + chr3_4:66545525-66545544 Msa0515320:intron 30.0%
GCTACCATTACTATTCATAA+TGG + chr3_4:66545710-66545729 Msa0515320:CDS 30.0%
!! ATAATGGCTTTGATTGTTCT+GGG + chr3_4:66545726-66545745 Msa0515320:CDS 30.0%
! TGGGACTTTTTACAGTAATT+GGG + chr3_4:66545745-66545764 Msa0515320:CDS 30.0%
! TGGGATATTTTACAGTGTAT+TGG + chr3_4:66545764-66545783 Msa0515320:CDS 30.0%
! GATATTTTACAGTGTATTGG+TGG + chr3_4:66545767-66545786 Msa0515320:CDS 30.0%
! ACTATCACATACTTGCTAAA+AGG + chr3_4:66545823-66545842 Msa0515320:CDS 30.0%
TGCTAAAAGGATGTTAACAA+AGG + chr3_4:66545836-66545855 Msa0515320:CDS 30.0%
! GATGTTAACAAAGGTTTGTT+TGG + chr3_4:66545845-66545864 Msa0515320:intron 30.0%
TTTCTCATTTACTGTGTCTT+TGG + chr3_4:66545873-66545892 Msa0515320:intron 30.0%
GCTAATTGCATAAATGCATT+AGG - chr3_4:66545961-66545980 None:intergenic 30.0%
! GATTGAAAGGATATTTCTGA+TGG + chr3_4:66546116-66546135 Msa0515320:intron 30.0%
ATTAATAATATCAGACAGGG+AGG - chr3_4:66546246-66546265 None:intergenic 30.0%
ATGTAATAAGGGGAAATTTG+GGG - chr3_4:66546347-66546366 None:intergenic 30.0%
GTATGTAATAAGGGGAAATT+TGG - chr3_4:66546349-66546368 None:intergenic 30.0%
TTCGGATAGTATGTAATAAG+GGG - chr3_4:66546357-66546376 None:intergenic 30.0%
GTTTCGGATAGTATGTAATA+AGG - chr3_4:66546359-66546378 None:intergenic 30.0%
GCACCATGCAATTATTATTA+AGG - chr3_4:66546583-66546602 None:intergenic 30.0%
ATTGTTGAACATGCTCAATT+GGG - chr3_4:66546732-66546751 None:intergenic 30.0%
AATTGTTGAACATGCTCAAT+TGG - chr3_4:66546733-66546752 None:intergenic 30.0%
TGTAATCAAACTGAATTGAG+CGG - chr3_4:66546904-66546923 None:intergenic 30.0%
! TTTAAGGGAGTGTGTGAAAT+TGG - chr3_4:66540816-66540835 None:intergenic 35.0%
! TGTTCTTCTTCAGTGTTTTC+AGG + chr3_4:66540937-66540956 Msa0515320:five_prime_UTR 35.0%
AAGAAAACGATTACCGAAGA+TGG - chr3_4:66541033-66541052 None:intergenic 35.0%
TTCTTCTCCAATTAGGGTTT+CGG + chr3_4:66541048-66541067 Msa0515320:five_prime_UTR 35.0%
TTGTATACCGAAACCCTAAT+TGG - chr3_4:66541058-66541077 None:intergenic 35.0%
CTCACAGTGATGATAATTTG+TGG - chr3_4:66541104-66541123 None:intergenic 35.0%
TAGGCTTATCATCCAAAATC+GGG - chr3_4:66541471-66541490 None:intergenic 35.0%
ATGATAAGCCTATCGATAAG+TGG + chr3_4:66541479-66541498 Msa0515320:CDS 35.0%
TGAAAGAGGAACTGAAAAGA+AGG + chr3_4:66541515-66541534 Msa0515320:CDS 35.0%
TACAATTCAAGCTTCTGAAC+AGG + chr3_4:66541762-66541781 Msa0515320:CDS 35.0%
ACAATTCAAGCTTCTGAACA+GGG + chr3_4:66541763-66541782 Msa0515320:CDS 35.0%
GCTACATTATCCGTTTCAAA+TGG - chr3_4:66541808-66541827 None:intergenic 35.0%
ATTAAGAATGTTGACCAGGA+TGG + chr3_4:66541859-66541878 Msa0515320:CDS 35.0%
CACTATTATTAGCGTCAACT+GGG - chr3_4:66541894-66541913 None:intergenic 35.0%
ACACTATTATTAGCGTCAAC+TGG - chr3_4:66541895-66541914 None:intergenic 35.0%
TACTTCTGTTGATACAGTCT+CGG - chr3_4:66542031-66542050 None:intergenic 35.0%
GTATCAACAGAAGTAGTAGT+CGG + chr3_4:66542036-66542055 Msa0515320:CDS 35.0%
TTACTTGAGTCCCTAAACTA+GGG - chr3_4:66542248-66542267 None:intergenic 35.0%
TTTACTTGAGTCCCTAAACT+AGG - chr3_4:66542249-66542268 None:intergenic 35.0%
!!! CTATTGGTTTTGTTCAACTC+TGG - chr3_4:66542504-66542523 None:intergenic 35.0%
! ACCAATAGTAGTGATGATGT+AGG + chr3_4:66542516-66542535 Msa0515320:CDS 35.0%
! CCAATAGTAGTGATGATGTA+GGG + chr3_4:66542517-66542536 Msa0515320:CDS 35.0%
! AAGTTCTGGTGATGATTCTA+TGG + chr3_4:66542566-66542585 Msa0515320:CDS 35.0%
GAATCATATTGCCTAATCTC+AGG - chr3_4:66542603-66542622 None:intergenic 35.0%
TGAGAATAACGAAGTCCTTA+TGG + chr3_4:66542653-66542672 Msa0515320:CDS 35.0%
GAGAATAACGAAGTCCTTAT+GGG + chr3_4:66542654-66542673 Msa0515320:CDS 35.0%
AGAATAACGAAGTCCTTATG+GGG + chr3_4:66542655-66542674 Msa0515320:CDS 35.0%
CAAAGCAAACCAATAGTTGT+GGG + chr3_4:66542684-66542703 Msa0515320:CDS 35.0%
AACTTACCAATGCGTTCTTT+AGG - chr3_4:66543079-66543098 None:intergenic 35.0%
AATAGTTCAAGATACAGCGT+AGG - chr3_4:66543188-66543207 None:intergenic 35.0%
GCATTTACTAAGCGAAGATA+AGG + chr3_4:66543342-66543361 Msa0515320:intron 35.0%
CGAAGATAAGGTTTAGTTGT+TGG + chr3_4:66543354-66543373 Msa0515320:intron 35.0%
! AAGTTCTTGCACAGCTTTTA+GGG - chr3_4:66543588-66543607 None:intergenic 35.0%
AAGAACTTCTTGGGAAAACT+GGG + chr3_4:66543600-66543619 Msa0515320:CDS 35.0%
GGAATTTACAGTAACAGGAA+GGG - chr3_4:66543699-66543718 None:intergenic 35.0%
TGGAATTTACAGTAACAGGA+AGG - chr3_4:66543700-66543719 None:intergenic 35.0%
! ATGCCGTGTATAATTTGCAA+TGG + chr3_4:66543823-66543842 Msa0515320:CDS 35.0%
AGGCCATTGCAAATTATACA+CGG - chr3_4:66543829-66543848 None:intergenic 35.0%
AATTTGCAATGGCCTACAAA+TGG + chr3_4:66543834-66543853 Msa0515320:CDS 35.0%
ATACCACTAACTAGCACAAT+GGG - chr3_4:66544304-66544323 None:intergenic 35.0%
AATACCACTAACTAGCACAA+TGG - chr3_4:66544305-66544324 None:intergenic 35.0%
TTCATAACTAAGAGCCACTT+GGG + chr3_4:66544406-66544425 Msa0515320:intron 35.0%
TATGCAGATTATTACCTCAC+TGG + chr3_4:66544588-66544607 Msa0515320:intron 35.0%
TATTACCTCACTGGCATATT+TGG + chr3_4:66544597-66544616 Msa0515320:CDS 35.0%
ATAAACCAAATATGCCAGTG+AGG - chr3_4:66544605-66544624 None:intergenic 35.0%
TAGATGGTTACCAGCAAAAT+TGG + chr3_4:66544629-66544648 Msa0515320:CDS 35.0%
! AAAATTGGCTTCGTATTCTC+TGG + chr3_4:66544644-66544663 Msa0515320:CDS 35.0%
! AAATTGGCTTCGTATTCTCT+GGG + chr3_4:66544645-66544664 Msa0515320:CDS 35.0%
AAGGAGAAAACTCTGAACTT+GGG - chr3_4:66544789-66544808 None:intergenic 35.0%
! ATGTTGGCATTTTCAAATGC+AGG + chr3_4:66544854-66544873 Msa0515320:intron 35.0%
! TTTTTAACAGTGTCAAAGGC+TGG - chr3_4:66545029-66545048 None:intergenic 35.0%
TTGTGCTAAAGCAATGAGAA+TGG - chr3_4:66545191-66545210 None:intergenic 35.0%
!! TATAAAAGTGCTTGTCGTTC+TGG + chr3_4:66545286-66545305 Msa0515320:intron 35.0%
CTATGATTGGAGATGGTATT+TGG + chr3_4:66545356-66545375 Msa0515320:intron 35.0%
!! CATAATGGCTTTGATTGTTC+TGG + chr3_4:66545725-66545744 Msa0515320:CDS 35.0%
! CTGGGACTTTTTACAGTAAT+TGG + chr3_4:66545744-66545763 Msa0515320:CDS 35.0%
!! AAACAAAGTGACGGATAACT+GGG - chr3_4:66545983-66546002 None:intergenic 35.0%
!! TAAACAAAGTGACGGATAAC+TGG - chr3_4:66545984-66546003 None:intergenic 35.0%
CACTTCAAATCTCGATTGAA+AGG + chr3_4:66546103-66546122 Msa0515320:intron 35.0%
TCACATGCATTGTTCTGTAT+GGG + chr3_4:66546184-66546203 Msa0515320:intron 35.0%
TGTAATAAGGGGAAATTTGG+GGG - chr3_4:66546346-66546365 None:intergenic 35.0%
AAGAAATGGAAGAGCAATAG+GGG - chr3_4:66546480-66546499 None:intergenic 35.0%
GAAGAAATGGAAGAGCAATA+GGG - chr3_4:66546481-66546500 None:intergenic 35.0%
AATTGTACCACAGGAAGAAA+TGG - chr3_4:66546494-66546513 None:intergenic 35.0%
CTGTGGTACAATTTAGTCAT+GGG + chr3_4:66546501-66546520 Msa0515320:intron 35.0%
AAAATGTCTGTAATGCTCAC+TGG - chr3_4:66546548-66546567 None:intergenic 35.0%
GACAATGGCAGAATATTTCA+GGG - chr3_4:66546605-66546624 None:intergenic 35.0%
AGACAATGGCAGAATATTTC+AGG - chr3_4:66546606-66546625 None:intergenic 35.0%
! CTGTTGTTACTTCTCATCAT+AGG + chr3_4:66546645-66546664 Msa0515320:intron 35.0%
TATGTTGTTGAAGATGTCGA+TGG + chr3_4:66546670-66546689 Msa0515320:CDS 35.0%
GACTCATTCAAACTCATAAG+AGG - chr3_4:66546768-66546787 None:intergenic 35.0%
AGCTTACGAAAACAAAGGTA+GGG - chr3_4:66546833-66546852 None:intergenic 35.0%
AGAACAGCTTACGAAAACAA+AGG - chr3_4:66546838-66546857 None:intergenic 35.0%
TACCTGAAGTAATACCGGAT+GGG - chr3_4:66540697-66540716 None:intergenic 40.0%
TTACCTGAAGTAATACCGGA+TGG - chr3_4:66540698-66540717 None:intergenic 40.0%
ATCCGGTATTACTTCAGGTA+AGG + chr3_4:66540697-66540716 Msa0515320:five_prime_UTR 40.0%
TGCCTTACCTGAAGTAATAC+CGG - chr3_4:66540702-66540721 None:intergenic 40.0%
!! GGATCTGCTGCTTTCAATTT+CGG + chr3_4:66541208-66541227 Msa0515320:intron 40.0%
! GTCTGAATTCAGGTTAAGGA+AGG + chr3_4:66541398-66541417 Msa0515320:intron 40.0%
TAAGCCTATCGATAAGTGGA+AGG + chr3_4:66541483-66541502 Msa0515320:CDS 40.0%
GTAACCTTCCACTTATCGAT+AGG - chr3_4:66541490-66541509 None:intergenic 40.0%
GGAACTGAAAAGAAGGAAGT+TGG + chr3_4:66541522-66541541 Msa0515320:CDS 40.0%
TCGAAGAAGGATGAGGTTAA+CGG + chr3_4:66541682-66541701 Msa0515320:CDS 40.0%
!! TTTGGACACTCAAGTTGATG+AGG + chr3_4:66541705-66541724 Msa0515320:CDS 40.0%
AGCGTCCACATTAATAGTCT+TGG - chr3_4:66541740-66541759 None:intergenic 40.0%
AAGACTATTAATGTGGACGC+TGG + chr3_4:66541739-66541758 Msa0515320:CDS 40.0%
CAATTCAAGCTTCTGAACAG+GGG + chr3_4:66541764-66541783 Msa0515320:CDS 40.0%
TGAAACGGATAATGTAGCGA+AGG + chr3_4:66541810-66541829 Msa0515320:CDS 40.0%
!!! CCAGAGGTTTTGGATAATGA+CGG + chr3_4:66541835-66541854 Msa0515320:CDS 40.0%
CGGTATTAAGAATGTTGACC+AGG + chr3_4:66541855-66541874 Msa0515320:CDS 40.0%
TAATGTGGAGACCACTGTTA+CGG + chr3_4:66541987-66542006 Msa0515320:CDS 40.0%
AGATAATGTTAGGCCAGAGA+TGG + chr3_4:66542359-66542378 Msa0515320:CDS 40.0%
! GGTACATCATTTCTGGATGA+TGG - chr3_4:66542393-66542412 None:intergenic 40.0%
GAATCACATTCAGTGGATGT+TGG + chr3_4:66542423-66542442 Msa0515320:CDS 40.0%
CTGCATGAAAAAAAGCCATC+TGG + chr3_4:66542450-66542469 Msa0515320:CDS 40.0%
CCCTACATCATCACTACTAT+TGG - chr3_4:66542520-66542539 None:intergenic 40.0%
! TGATGTAGGGTATCCAGAAA+AGG + chr3_4:66542530-66542549 Msa0515320:CDS 40.0%
GTATCCAGAAAAGGTGAACT+TGG + chr3_4:66542539-66542558 Msa0515320:CDS 40.0%
! TGGTGATGATTCTATGGAAG+AGG + chr3_4:66542572-66542591 Msa0515320:CDS 40.0%
GCAAAGCAAACCAATAGTTG+TGG + chr3_4:66542683-66542702 Msa0515320:CDS 40.0%
AAACCAATAGTTGTGGGAGA+TGG + chr3_4:66542690-66542709 Msa0515320:CDS 40.0%
! GTGGGTATCACTATTTCTTG+CGG - chr3_4:66542721-66542740 None:intergenic 40.0%
ATACTTTCGCTTCTCAGTCA+AGG - chr3_4:66542769-66542788 None:intergenic 40.0%
GATACACCTAAAGAACGCAT+TGG + chr3_4:66543070-66543089 Msa0515320:CDS 40.0%
! AACGCATTGGTAAGTTGACA+TGG + chr3_4:66543083-66543102 Msa0515320:intron 40.0%
! GTGTCCAAAATTAAAGTGCC+AGG - chr3_4:66543224-66543243 None:intergenic 40.0%
ACACAAACACACACTAATCC+CGG - chr3_4:66543459-66543478 None:intergenic 40.0%
!! AATCCTGAGGGAATTTGTTG+CGG - chr3_4:66543543-66543562 None:intergenic 40.0%
AAGGAACTGATCAATCCTGA+GGG - chr3_4:66543555-66543574 None:intergenic 40.0%
!!! CTTTTAGGGTAAATGGACGA+AGG - chr3_4:66543574-66543593 None:intergenic 40.0%
!!! TGCACAGCTTTTAGGGTAAA+TGG - chr3_4:66543581-66543600 None:intergenic 40.0%
! GAAGTTCTTGCACAGCTTTT+AGG - chr3_4:66543589-66543608 None:intergenic 40.0%
AAAGCTGTGCAAGAACTTCT+TGG + chr3_4:66543590-66543609 Msa0515320:CDS 40.0%
AAGCTGTGCAAGAACTTCTT+GGG + chr3_4:66543591-66543610 Msa0515320:CDS 40.0%
CAAGAACTTCTTGGGAAAAC+TGG + chr3_4:66543599-66543618 Msa0515320:CDS 40.0%
AGATCATCCAGAGTGACAAT+AGG - chr3_4:66544125-66544144 None:intergenic 40.0%
! ATTAGCCTGCAATTTGCATC+TGG + chr3_4:66544255-66544274 Msa0515320:intron 40.0%
TGTGCTAGTTAGTGGTATTG+TGG + chr3_4:66544306-66544325 Msa0515320:intron 40.0%
CTTCATAACTAAGAGCCACT+TGG + chr3_4:66544405-66544424 Msa0515320:intron 40.0%
! GAATACGAAGCCAATTTTGC+TGG - chr3_4:66544642-66544661 None:intergenic 40.0%
! AATTGGCTTCGTATTCTCTG+GGG + chr3_4:66544646-66544665 Msa0515320:CDS 40.0%
GGAGAAAAGGAGAAAATTCC+TGG - chr3_4:66544759-66544778 None:intergenic 40.0%
AGGAGAAAACTCTGAACTTG+GGG - chr3_4:66544788-66544807 None:intergenic 40.0%
GAAGGAGAAAACTCTGAACT+TGG - chr3_4:66544790-66544809 None:intergenic 40.0%
! AAGTAATGAAGCACCCAGAA+AGG - chr3_4:66544907-66544926 None:intergenic 40.0%
TCGAAGAGTTCGCAATGATT+TGG + chr3_4:66544934-66544953 Msa0515320:CDS 40.0%
! TAAAATCAGTGCTGTTACCC+AGG - chr3_4:66544998-66545017 None:intergenic 40.0%
ACCATCTCCAATCATAGTTC+TGG - chr3_4:66545353-66545372 None:intergenic 40.0%
! TGATTGCACTGCATGTTTTG+AGG + chr3_4:66545629-66545648 Msa0515320:CDS 40.0%
!! GATTGCACTGCATGTTTTGA+GGG + chr3_4:66545630-66545649 Msa0515320:CDS 40.0%
AACAGAATGTGGTGGTTGTT+TGG + chr3_4:66545668-66545687 Msa0515320:CDS 40.0%
ACAGAATGTGGTGGTTGTTT+GGG + chr3_4:66545669-66545688 Msa0515320:CDS 40.0%
GTCACATGCATTGTTCTGTA+TGG + chr3_4:66546183-66546202 Msa0515320:intron 40.0%
CACATGCATTGTTCTGTATG+GGG + chr3_4:66546185-66546204 Msa0515320:intron 40.0%
CAGATGGGACAGAATTGTTT+CGG - chr3_4:66546375-66546394 None:intergenic 40.0%
AACTTGCATATGCAGCAGAT+GGG - chr3_4:66546390-66546409 None:intergenic 40.0%
AAACTTGCATATGCAGCAGA+TGG - chr3_4:66546391-66546410 None:intergenic 40.0%
TGTCACCAAGGATCAACTTT+GGG - chr3_4:66546428-66546447 None:intergenic 40.0%
ATGTCACCAAGGATCAACTT+TGG - chr3_4:66546429-66546448 None:intergenic 40.0%
GGAAGAAATGGAAGAGCAAT+AGG - chr3_4:66546482-66546501 None:intergenic 40.0%
CCATGACTAAATTGTACCAC+AGG - chr3_4:66546503-66546522 None:intergenic 40.0%
CCTGTGGTACAATTTAGTCA+TGG + chr3_4:66546500-66546519 Msa0515320:intron 40.0%
TGGTACAATTTAGTCATGGG+AGG + chr3_4:66546504-66546523 Msa0515320:intron 40.0%
GGTACAATTTAGTCATGGGA+GGG + chr3_4:66546505-66546524 Msa0515320:intron 40.0%
TTGAACATGCTCAATTGGGA+GGG - chr3_4:66546728-66546747 None:intergenic 40.0%
CAGCTTACGAAAACAAAGGT+AGG - chr3_4:66546834-66546853 None:intergenic 40.0%
ACCTGAAGTAATACCGGATG+GGG - chr3_4:66540696-66540715 None:intergenic 45.0%
GCATTCGATTTCGTTGTTCG+TGG + chr3_4:66540977-66540996 Msa0515320:five_prime_UTR 45.0%
GGAGAATCGAGAAAATTGCG+TGG - chr3_4:66541083-66541102 None:intergenic 45.0%
GAAGGTTACAGAGCTGAAAG+AGG + chr3_4:66541501-66541520 Msa0515320:CDS 45.0%
AGAAGGAAGTTGGCTACCAA+AGG + chr3_4:66541532-66541551 Msa0515320:CDS 45.0%
GTTGGCTACCAAAGGTTTGA+AGG + chr3_4:66541540-66541559 Msa0515320:CDS 45.0%
GAAGGATGAGGTTAACGGTT+TGG + chr3_4:66541687-66541706 Msa0515320:CDS 45.0%
TAATGTAGCGAAGGTTCCAG+AGG + chr3_4:66541819-66541838 Msa0515320:CDS 45.0%
CCGTCATTATCCAAAACCTC+TGG - chr3_4:66541838-66541857 None:intergenic 45.0%
GTGTCAGCAATGGATCTAGA+AGG + chr3_4:66541913-66541932 Msa0515320:CDS 45.0%
GGATCTAGAAGGTGAACATG+TGG + chr3_4:66541924-66541943 Msa0515320:CDS 45.0%
ACATGTGGAATCTGCTAACG+CGG + chr3_4:66541939-66541958 Msa0515320:CDS 45.0%
TGTTGCCCATCCTTCTAATG+TGG + chr3_4:66541972-66541991 Msa0515320:CDS 45.0%
GGTCTCCACATTAGAAGGAT+GGG - chr3_4:66541980-66541999 None:intergenic 45.0%
TGGTCTCCACATTAGAAGGA+TGG - chr3_4:66541981-66542000 None:intergenic 45.0%
ACAGTGGTCTCCACATTAGA+AGG - chr3_4:66541985-66542004 None:intergenic 45.0%
TCAACAGAAGTAGTAGTCGG+CGG + chr3_4:66542039-66542058 Msa0515320:CDS 45.0%
AGGATTCGGCAATCAAGCTA+GGG + chr3_4:66542094-66542113 Msa0515320:CDS 45.0%
GCTAGGGAATGAGGAATCAA+AGG + chr3_4:66542110-66542129 Msa0515320:CDS 45.0%
TTTGTGTCAGACTCCAGTTG+GGG - chr3_4:66542162-66542181 None:intergenic 45.0%
CTTTGTGTCAGACTCCAGTT+GGG - chr3_4:66542163-66542182 None:intergenic 45.0%
!!! TTTTCTGGAGCGGAAGAGTT+GGG - chr3_4:66542207-66542226 None:intergenic 45.0%
!! AGATACCTGGTTTTCTGGAG+CGG - chr3_4:66542217-66542236 None:intergenic 45.0%
TCCAGAAAACCAGGTATCTG+AGG + chr3_4:66542218-66542237 Msa0515320:CDS 45.0%
!! ACCTCAGATACCTGGTTTTC+TGG - chr3_4:66542222-66542241 None:intergenic 45.0%
! TCTGAGGTCAACCCTAGTTT+AGG + chr3_4:66542234-66542253 Msa0515320:CDS 45.0%
CTGAGGTCAACCCTAGTTTA+GGG + chr3_4:66542235-66542254 Msa0515320:CDS 45.0%
TAATGTTAGGCCAGAGATGG+TGG + chr3_4:66542362-66542381 Msa0515320:CDS 45.0%
TCACATTCAGTGGATGTTGG+AGG + chr3_4:66542426-66542445 Msa0515320:CDS 45.0%
CACATTCAGTGGATGTTGGA+GGG + chr3_4:66542427-66542446 Msa0515320:CDS 45.0%
! CTGTCCAAGTTCACCTTTTC+TGG - chr3_4:66542546-66542565 None:intergenic 45.0%
GTGAACTTGGACAGAAGTTC+TGG + chr3_4:66542552-66542571 Msa0515320:CDS 45.0%
AAGAGGACTTGCCTGAGATT+AGG + chr3_4:66542589-66542608 Msa0515320:CDS 45.0%
TAACGAAGTCCTTATGGGGA+AGG + chr3_4:66542659-66542678 Msa0515320:CDS 45.0%
ACACCATCTCCCACAACTAT+TGG - chr3_4:66542696-66542715 None:intergenic 45.0%
!! ACTGAGAAGCGAAAGTATCC+TGG + chr3_4:66542771-66542790 Msa0515320:CDS 45.0%
GGAACAATGAGCCTGCAAAA+AGG + chr3_4:66542912-66542931 Msa0515320:CDS 45.0%
TGGAACACTGAGGCAGTTAA+AGG + chr3_4:66542944-66542963 Msa0515320:CDS 45.0%
TTGGGTGTAGTAGCAGATCT+GGG - chr3_4:66542992-66543011 None:intergenic 45.0%
! AGAGTAATTTGCCCGTCCTT+GGG - chr3_4:66543010-66543029 None:intergenic 45.0%
!! CTCTGAAGCGCAACTTATCT+AGG + chr3_4:66543026-66543045 Msa0515320:CDS 45.0%
TAAGGTTTAGTTGTTGGCGC+TGG + chr3_4:66543360-66543379 Msa0515320:intron 45.0%
GAAGGAACTGATCAATCCTG+AGG - chr3_4:66543556-66543575 None:intergenic 45.0%
! GAGTGTTAGCAGTTTCTGGA+TGG + chr3_4:66543622-66543641 Msa0515320:CDS 45.0%
TGTTTCAATGGCCTCTTCAG+TGG - chr3_4:66543799-66543818 None:intergenic 45.0%
CACGGCATTTCGTGTTTCAA+TGG - chr3_4:66543811-66543830 None:intergenic 45.0%
TTGCAATGGCCTACAAATGG+TGG + chr3_4:66543837-66543856 Msa0515320:CDS 45.0%
TGCAATGGCCTACAAATGGT+GGG + chr3_4:66543838-66543857 Msa0515320:CDS 45.0%
CATCCAGAGTGACAATAGGT+GGG - chr3_4:66544121-66544140 None:intergenic 45.0%
TCATCCAGAGTGACAATAGG+TGG - chr3_4:66544122-66544141 None:intergenic 45.0%
!! GAGGAGTTGCAGTGGTTTTA+CGG - chr3_4:66544151-66544170 None:intergenic 45.0%
GTAAAACCACTGCAACTCCT+CGG + chr3_4:66544150-66544169 Msa0515320:CDS 45.0%
! GCAACTTGCTCTTCTGACAA+AGG - chr3_4:66544188-66544207 None:intergenic 45.0%
AGCAACCAGATGCAAATTGC+AGG - chr3_4:66544263-66544282 None:intergenic 45.0%
ATGCCCATTGTGCTAGTTAG+TGG + chr3_4:66544298-66544317 Msa0515320:intron 45.0%
!! TGGAAGCTTTGAGTGCATCT+TGG + chr3_4:66544326-66544345 Msa0515320:CDS 45.0%
ATAACTAAGAGCCACTTGGG+TGG + chr3_4:66544409-66544428 Msa0515320:intron 45.0%
TGTCTTTGTTGCTGTCAACC+TGG + chr3_4:66544977-66544996 Msa0515320:CDS 45.0%
GTCTTTGTTGCTGTCAACCT+GGG + chr3_4:66544978-66544997 Msa0515320:CDS 45.0%
ATAACGACGCTTCAAGCAGA+TGG - chr3_4:66545071-66545090 None:intergenic 45.0%
GTGTAGTGTACGCTAAAACC+TGG - chr3_4:66545135-66545154 None:intergenic 45.0%
GCCAGAACTATGATTGGAGA+TGG + chr3_4:66545349-66545368 Msa0515320:intron 45.0%
! CAGTGTATTGGTGGCAACTA+TGG + chr3_4:66545776-66545795 Msa0515320:CDS 45.0%
! TGTATTGGTGGCAACTATGG+TGG + chr3_4:66545779-66545798 Msa0515320:CDS 45.0%
! GTATTGGTGGCAACTATGGT+GGG + chr3_4:66545780-66545799 Msa0515320:CDS 45.0%
TCAGCTACTAGCGTAACTCT+AGG + chr3_4:66546161-66546180 Msa0515320:intron 45.0%
TAGGAGTTAGCAGAACACTC+AGG - chr3_4:66546285-66546304 None:intergenic 45.0%
GGACGAAATGAGGTACGAAT+GGG - chr3_4:66546325-66546344 None:intergenic 45.0%
GAAATTTGGGGGACGAAATG+AGG - chr3_4:66546335-66546354 None:intergenic 45.0%
! CAAGGATCAACTTTGGGAGT+TGG - chr3_4:66546422-66546441 None:intergenic 45.0%
! CAACTCCCAAAGTTGATCCT+TGG + chr3_4:66546420-66546439 Msa0515320:intron 45.0%
TGCTCTTCCATTTCTTCCTG+TGG + chr3_4:66546484-66546503 Msa0515320:intron 45.0%
ATGTCGATGGAGAGATGACA+GGG + chr3_4:66546683-66546702 Msa0515320:CDS 45.0%
GTTGAACATGCTCAATTGGG+AGG - chr3_4:66546729-66546748 None:intergenic 45.0%
!! ATTAACTATATTATATATAA+TGG + chr3_4:66545104-66545123 Msa0515320:intron 5.0%
ACCCCATCCGGTATTACTTC+AGG + chr3_4:66540692-66540711 Msa0515320:five_prime_UTR 50.0%
! AGCCTCCTGTTCCTTTTTGC+GGG - chr3_4:66541626-66541645 None:intergenic 50.0%
! CAGCCTCCTGTTCCTTTTTG+CGG - chr3_4:66541627-66541646 None:intergenic 50.0%
CTCATCCTTCTTCGAACCCT+CGG - chr3_4:66541677-66541696 None:intergenic 50.0%
GCTTCTGAACAGGGGAATAG+TGG + chr3_4:66541772-66541791 Msa0515320:CDS 50.0%
! AGCGAAGGTTCCAGAGGTTT+TGG + chr3_4:66541825-66541844 Msa0515320:CDS 50.0%
CATGTGGAATCTGCTAACGC+GGG + chr3_4:66541940-66541959 Msa0515320:CDS 50.0%
AGTCTCGGTTACCGTAACAG+TGG - chr3_4:66542001-66542020 None:intergenic 50.0%
TGTTACGGTAACCGAGACTG+TGG + chr3_4:66542002-66542021 Msa0515320:CDS 50.0%
GAGGATTCGGCAATCAAGCT+AGG + chr3_4:66542093-66542112 Msa0515320:CDS 50.0%
GGCAATCAAGCTAGGGAATG+AGG + chr3_4:66542101-66542120 Msa0515320:CDS 50.0%
GCTTTGTGTCAGACTCCAGT+TGG - chr3_4:66542164-66542183 None:intergenic 50.0%
TGGGCATGAGATCGTCACAT+GGG - chr3_4:66542188-66542207 None:intergenic 50.0%
TTGGGCATGAGATCGTCACA+TGG - chr3_4:66542189-66542208 None:intergenic 50.0%
!!! GTTTTCTGGAGCGGAAGAGT+TGG - chr3_4:66542208-66542227 None:intergenic 50.0%
TAGGGTTGACCTCAGATACC+TGG - chr3_4:66542230-66542249 None:intergenic 50.0%
GATGGTTCTTCCACCATCTC+TGG - chr3_4:66542375-66542394 None:intergenic 50.0%
TGCTTTGCTCCTTCCCCATA+AGG - chr3_4:66542671-66542690 None:intergenic 50.0%
CTTGGGTGTAGTAGCAGATC+TGG - chr3_4:66542993-66543012 None:intergenic 50.0%
CAGATCTGCTACTACACCCA+AGG + chr3_4:66542991-66543010 Msa0515320:CDS 50.0%
TCTGCTACTACACCCAAGGA+CGG + chr3_4:66542995-66543014 Msa0515320:CDS 50.0%
! CAGAGTAATTTGCCCGTCCT+TGG - chr3_4:66543011-66543030 None:intergenic 50.0%
TTTGTTGCGGCTCTTCGAGA+TGG - chr3_4:66543530-66543549 None:intergenic 50.0%
!! CTGGGAGTGTTAGCAGTTTC+TGG + chr3_4:66543618-66543637 Msa0515320:CDS 50.0%
! AATGGCCTACAAATGGTGGG+CGG + chr3_4:66543841-66543860 Msa0515320:CDS 50.0%
TTGACAGCAGGAGTAGGAGT+GGG - chr3_4:66543924-66543943 None:intergenic 50.0%
!! ATTGGAGCACTGTTGACAGC+AGG - chr3_4:66543936-66543955 None:intergenic 50.0%
TGGGTCCACTTTCTCAGGAA+GGG - chr3_4:66544102-66544121 None:intergenic 50.0%
ATAGGTGGGTCCACTTTCTC+AGG - chr3_4:66544107-66544126 None:intergenic 50.0%
ATAGATCCGAGGAGTTGCAG+TGG - chr3_4:66544159-66544178 None:intergenic 50.0%
GCAAGTTGCTGCGAAACTTG+CGG + chr3_4:66544199-66544218 Msa0515320:CDS 50.0%
!! AGCTTTGAGTGCATCTTGGC+TGG + chr3_4:66544330-66544349 Msa0515320:CDS 50.0%
CTTGGGGCAAGATGGAGAAA+AGG - chr3_4:66544772-66544791 None:intergenic 50.0%
ACTCTGAACTTGGGGCAAGA+TGG - chr3_4:66544780-66544799 None:intergenic 50.0%
! TTTGCCTTGCTTGGCCTTTC+TGG + chr3_4:66544890-66544909 Msa0515320:CDS 50.0%
! TTGCCTTGCTTGGCCTTTCT+GGG + chr3_4:66544891-66544910 Msa0515320:CDS 50.0%
!! TGTGCTGACTGTCATTTGCC+AGG + chr3_4:66545588-66545607 Msa0515320:CDS 50.0%
! TGCCAGGCACTCTTTGTTTG+TGG + chr3_4:66545604-66545623 Msa0515320:CDS 50.0%
!! GTCCACAAACAAAGAGTGCC+TGG - chr3_4:66545609-66545628 None:intergenic 50.0%
!!! ACTGCATGTTTTGAGGGCTG+TGG + chr3_4:66545636-66545655 Msa0515320:CDS 50.0%
!! TTTTGAGGGCTGTGGAACCA+TGG + chr3_4:66545644-66545663 Msa0515320:CDS 50.0%
GGAACCATGGCAACAGAATG+TGG + chr3_4:66545657-66545676 Msa0515320:CDS 50.0%
ACCATGGCAACAGAATGTGG+TGG + chr3_4:66545660-66545679 Msa0515320:CDS 50.0%
ACCACCACATTCTGTTGCCA+TGG - chr3_4:66545664-66545683 None:intergenic 50.0%
GAATGTGGTGGTTGTTTGGG+AGG + chr3_4:66545672-66545691 Msa0515320:CDS 50.0%
!! TGGCAACTATGGTGGGTCAA+CGG + chr3_4:66545787-66545806 Msa0515320:CDS 50.0%
!! CTATGGTGGGTCAACGGATA+TGG + chr3_4:66545793-66545812 Msa0515320:CDS 50.0%
!! GAATGGGCTGAGTGAGAGTT+TGG - chr3_4:66546309-66546328 None:intergenic 50.0%
GGGACGAAATGAGGTACGAA+TGG - chr3_4:66546326-66546345 None:intergenic 50.0%
ACACTCACGTACTCATGAGG+GGG - chr3_4:66546452-66546471 None:intergenic 50.0%
CACACTCACGTACTCATGAG+GGG - chr3_4:66546453-66546472 None:intergenic 50.0%
GCACACTCACGTACTCATGA+GGG - chr3_4:66546454-66546473 None:intergenic 50.0%
TGCACACTCACGTACTCATG+AGG - chr3_4:66546455-66546474 None:intergenic 50.0%
GATGTCGATGGAGAGATGAC+AGG + chr3_4:66546682-66546701 Msa0515320:CDS 50.0%
GAGAGATGACAGGGTCTGAT+TGG + chr3_4:66546692-66546711 Msa0515320:CDS 50.0%
GTAGGGCGAGTCTACTTCTA+CGG - chr3_4:66546816-66546835 None:intergenic 50.0%
TTTGGATGAAGCCCTTCGCG+AGG + chr3_4:66541579-66541598 Msa0515320:CDS 55.0%
ATGAAGCCCTTCGCGAGGAA+AGG + chr3_4:66541584-66541603 Msa0515320:CDS 55.0%
TGAAGCCCTTCGCGAGGAAA+GGG + chr3_4:66541585-66541604 Msa0515320:CDS 55.0%
TGCCCGCAAAAAGGAACAGG+AGG + chr3_4:66541621-66541640 Msa0515320:CDS 55.0%
AAAGGAACAGGAGGCTGCTG+AGG + chr3_4:66541630-66541649 Msa0515320:CDS 55.0%
CGAGGGTTCGAAGAAGGATG+AGG + chr3_4:66541675-66541694 Msa0515320:CDS 55.0%
AGTCTCGGTGACCACAGTCT+CGG - chr3_4:66542016-66542035 None:intergenic 55.0%
AGAAGTAGTAGTCGGCGGTC+AGG + chr3_4:66542044-66542063 Msa0515320:CDS 55.0%
! TGAGGAATCAAAGGCGCAGC+TGG + chr3_4:66542119-66542138 Msa0515320:CDS 55.0%
! AAAGGCGCAGCTGGATAGTG+AGG + chr3_4:66542128-66542147 Msa0515320:CDS 55.0%
TGAGGACTCAAAGCCCCAAC+TGG + chr3_4:66542146-66542165 Msa0515320:CDS 55.0%
GGCATGAGATCGTCACATGG+GGG - chr3_4:66542186-66542205 None:intergenic 55.0%
GGGCATGAGATCGTCACATG+GGG - chr3_4:66542187-66542206 None:intergenic 55.0%
CTCTTCCGCTCCAGAAAACC+AGG + chr3_4:66542209-66542228 Msa0515320:CDS 55.0%
AGCCTGCAAAAAGGCAACGC+AGG + chr3_4:66542921-66542940 Msa0515320:CDS 55.0%
! CACCTGCGTTGCCTTTTTGC+AGG - chr3_4:66542926-66542945 None:intergenic 55.0%
CTGCAAAAAGGCAACGCAGG+TGG + chr3_4:66542924-66542943 Msa0515320:CDS 55.0%
CTGCTACTACACCCAAGGAC+GGG + chr3_4:66542996-66543015 Msa0515320:CDS 55.0%
GAGCCGCAACAAATTCCCTC+AGG + chr3_4:66543537-66543556 Msa0515320:CDS 55.0%
GCAGTACTCGTCCACTGAAG+AGG + chr3_4:66543785-66543804 Msa0515320:intron 55.0%
AAGAGCCGCCCACCATTTGT+AGG - chr3_4:66543849-66543868 None:intergenic 55.0%
GTTGACAGCAGGAGTAGGAG+TGG - chr3_4:66543925-66543944 None:intergenic 55.0%
GCACTGTTGACAGCAGGAGT+AGG - chr3_4:66543930-66543949 None:intergenic 55.0%
GAAGCCTCTGGCTGTGAAGA+GGG - chr3_4:66543975-66543994 None:intergenic 55.0%
!! TTACCAATGGTGGCGGAGGT+GGG - chr3_4:66544037-66544056 None:intergenic 55.0%
ACTTTCTCAGGAAGGGGTGG+TGG - chr3_4:66544095-66544114 None:intergenic 55.0%
ACCACCCCTTCCTGAGAAAG+TGG + chr3_4:66544094-66544113 Msa0515320:CDS 55.0%
TCCACTTTCTCAGGAAGGGG+TGG - chr3_4:66544098-66544117 None:intergenic 55.0%
GGGTCCACTTTCTCAGGAAG+GGG - chr3_4:66544101-66544120 None:intergenic 55.0%
GTGGGTCCACTTTCTCAGGA+AGG - chr3_4:66544103-66544122 None:intergenic 55.0%
GGACCCACCTATTGTCACTC+TGG + chr3_4:66544115-66544134 Msa0515320:CDS 55.0%
! GGGTAAGAGTACGAGGCAGT+AGG + chr3_4:66544226-66544245 Msa0515320:intron 55.0%
!! GTGGTTGTTTGGGAGGTGCT+GGG + chr3_4:66545679-66545698 Msa0515320:CDS 55.0%
!! TGGTTGTTTGGGAGGTGCTG+GGG + chr3_4:66545680-66545699 Msa0515320:CDS 55.0%
GGCTGAGTGAGAGTTTGGCT+AGG - chr3_4:66546304-66546323 None:intergenic 55.0%
TCATGAGGGGGATGTCACCA+AGG - chr3_4:66546440-66546459 None:intergenic 55.0%
ACATGCTCAATTGGGAGGGC+TGG - chr3_4:66546724-66546743 None:intergenic 55.0%
AGCCTCCCTTTCCTCGCGAA+GGG - chr3_4:66541593-66541612 None:intergenic 60.0%
TGCTGAGGCTGCCCGCAAAA+AGG + chr3_4:66541612-66541631 Msa0515320:CDS 60.0%
GGCTGCCCGCAAAAAGGAAC+AGG + chr3_4:66541618-66541637 Msa0515320:CDS 60.0%
CTGGGTCAGTGACACCATCC+TGG - chr3_4:66541876-66541895 None:intergenic 60.0%
GGAATCTGCTAACGCGGGAG+AGG + chr3_4:66541945-66541964 Msa0515320:CDS 60.0%
ATCTGCTAACGCGGGAGAGG+AGG + chr3_4:66541948-66541967 Msa0515320:CDS 60.0%
GCAACGCAGGTGGAACACTG+AGG + chr3_4:66542934-66542953 Msa0515320:CDS 60.0%
GTTGCGGCTCTTCGAGATGG+TGG - chr3_4:66543527-66543546 None:intergenic 60.0%
ACAGCAGGAGTAGGAGTGGG+AGG - chr3_4:66543921-66543940 None:intergenic 60.0%
GGTGGTGCGGGAGGAACTAT+TGG - chr3_4:66543954-66543973 None:intergenic 60.0%
TGGCTGTGAAGAGGGTGGTG+CGG - chr3_4:66543967-66543986 None:intergenic 60.0%
ACCACCCTCTTCACAGCCAG+AGG + chr3_4:66543968-66543987 Msa0515320:CDS 60.0%
GGAAGCCTCTGGCTGTGAAG+AGG - chr3_4:66543976-66543995 None:intergenic 60.0%
! TTGCTCCCTGTGCTGACGAG+GGG - chr3_4:66543997-66544016 None:intergenic 60.0%
! GTTGCTCCCTGTGCTGACGA+GGG - chr3_4:66543998-66544017 None:intergenic 60.0%
! TGTTGCTCCCTGTGCTGACG+AGG - chr3_4:66543999-66544018 None:intergenic 60.0%
!! CTTACCAATGGTGGCGGAGG+TGG - chr3_4:66544038-66544057 None:intergenic 60.0%
CACCTCCGCCACCATTGGTA+AGG + chr3_4:66544036-66544055 Msa0515320:CDS 60.0%
ACTGGTGGGGGCCTTACCAA+TGG - chr3_4:66544050-66544069 None:intergenic 60.0%
TAAGGCCCCCACCAGTTGCT+AGG + chr3_4:66544054-66544073 Msa0515320:CDS 60.0%
AAGGCCCCCACCAGTTGCTA+GGG + chr3_4:66544055-66544074 Msa0515320:CDS 60.0%
CGTTCCCTAGCAACTGGTGG+GGG - chr3_4:66544062-66544081 None:intergenic 60.0%
GCGTTCCCTAGCAACTGGTG+GGG - chr3_4:66544063-66544082 None:intergenic 60.0%
GGCGTTCCCTAGCAACTGGT+GGG - chr3_4:66544064-66544083 None:intergenic 60.0%
AGGCGTTCCCTAGCAACTGG+TGG - chr3_4:66544065-66544084 None:intergenic 60.0%
!! GGAAGGCGTTCCCTAGCAAC+TGG - chr3_4:66544068-66544087 None:intergenic 60.0%
TGCTGCGAAACTTGCGGCTC+AGG + chr3_4:66544205-66544224 Msa0515320:CDS 60.0%
GCTGCGAAACTTGCGGCTCA+GGG + chr3_4:66544206-66544225 Msa0515320:CDS 60.0%
! CGGCTCAGGGTAAGAGTACG+AGG + chr3_4:66544219-66544238 Msa0515320:intron 60.0%
GCACCCAGAAAGGCCAAGCA+AGG - chr3_4:66544897-66544916 None:intergenic 60.0%
! GGTGGTTGTTTGGGAGGTGC+TGG + chr3_4:66545678-66545697 Msa0515320:CDS 60.0%
TGCTCAATTGGGAGGGCTGG+AGG - chr3_4:66546721-66546740 None:intergenic 60.0%
AGCCCTTCGCGAGGAAAGGG+AGG + chr3_4:66541588-66541607 Msa0515320:CDS 65.0%
CAGCCTCCCTTTCCTCGCGA+AGG - chr3_4:66541594-66541613 None:intergenic 65.0%
CGAGGAAAGGGAGGCTGCTG+AGG + chr3_4:66541597-66541616 Msa0515320:CDS 65.0%
TGCTGAGGCTTCCCCCGAAC+AGG + chr3_4:66541645-66541664 Msa0515320:CDS 65.0%
TGAGGCTTCCCCCGAACAGG+AGG + chr3_4:66541648-66541667 Msa0515320:CDS 65.0%
ACCCTCGGCAGCCTCCTGTT+CGG - chr3_4:66541662-66541681 None:intergenic 65.0%
GGCTGCCGAGGGTTCGAAGA+AGG + chr3_4:66541669-66541688 Msa0515320:CDS 65.0%
TGTGAAGAGGGTGGTGCGGG+AGG - chr3_4:66543963-66543982 None:intergenic 65.0%
GGCTGTGAAGAGGGTGGTGC+GGG - chr3_4:66543966-66543985 None:intergenic 65.0%
GCCTCTGGCTGTGAAGAGGG+TGG - chr3_4:66543972-66543991 None:intergenic 65.0%
TGCTGACGAGGGGAAGCCTC+TGG - chr3_4:66543987-66544006 None:intergenic 65.0%
AGGCTTCCCCTCGTCAGCAC+AGG + chr3_4:66543988-66544007 Msa0515320:CDS 65.0%
GGCTTCCCCTCGTCAGCACA+GGG + chr3_4:66543989-66544008 Msa0515320:CDS 65.0%
TCTCCCACCTCCGCCACCAT+TGG + chr3_4:66544031-66544050 Msa0515320:CDS 65.0%
!! GGCCTTACCAATGGTGGCGG+AGG - chr3_4:66544041-66544060 None:intergenic 65.0%
GGGGGCCTTACCAATGGTGG+CGG - chr3_4:66544044-66544063 None:intergenic 65.0%
GGTGGGGGCCTTACCAATGG+TGG - chr3_4:66544047-66544066 None:intergenic 65.0%
! GAAGGGGTGGTGGCGATGGA+AGG - chr3_4:66544085-66544104 None:intergenic 65.0%
! TCAGGAAGGGGTGGTGGCGA+TGG - chr3_4:66544089-66544108 None:intergenic 65.0%
!! TTGGGAGGTGCTGGGGAAGC+AGG + chr3_4:66545687-66545706 Msa0515320:CDS 65.0%
!! TGGGAGGTGCTGGGGAAGCA+GGG + chr3_4:66545688-66545707 Msa0515320:CDS 65.0%
CTCGGCAGCCTCCTGTTCGG+GGG - chr3_4:66541659-66541678 None:intergenic 70.0%
CCTCGGCAGCCTCCTGTTCG+GGG - chr3_4:66541660-66541679 None:intergenic 70.0%
CCCTCGGCAGCCTCCTGTTC+GGG - chr3_4:66541661-66541680 None:intergenic 70.0%
CCCGAACAGGAGGCTGCCGA+GGG + chr3_4:66541658-66541677 Msa0515320:CDS 70.0%
GGCGGAGGTGGGAGAGTGAC+TGG - chr3_4:66544026-66544045 None:intergenic 70.0%
CCCCGAACAGGAGGCTGCCG+AGG + chr3_4:66541657-66541676 Msa0515320:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 66540681 66547016 66540681 ID=Msa0515320;Name=Msa0515320
chr3_4 mRNA 66540681 66547016 66540681 ID=Msa0515320-mRNA-1;Parent=Msa0515320;Name=Msa0515320-mRNA-1;_AED=0.11;_eAED=0.11;_QI=476|0.66|0.7|1|0.88|0.8|10|242|927
chr3_4 exon 66540681 66541118 66540681 ID=Msa0515320-mRNA-1:exon:17099;Parent=Msa0515320-mRNA-1
chr3_4 exon 66541410 66542792 66541410 ID=Msa0515320-mRNA-1:exon:17100;Parent=Msa0515320-mRNA-1
chr3_4 exon 66542897 66543091 66542897 ID=Msa0515320-mRNA-1:exon:17101;Parent=Msa0515320-mRNA-1
chr3_4 exon 66543522 66543673 66543522 ID=Msa0515320-mRNA-1:exon:17102;Parent=Msa0515320-mRNA-1
chr3_4 exon 66543789 66544227 66543789 ID=Msa0515320-mRNA-1:exon:17103;Parent=Msa0515320-mRNA-1
chr3_4 exon 66544314 66544351 66544314 ID=Msa0515320-mRNA-1:exon:17104;Parent=Msa0515320-mRNA-1
chr3_4 exon 66544595 66544703 66544595 ID=Msa0515320-mRNA-1:exon:17105;Parent=Msa0515320-mRNA-1
chr3_4 exon 66544876 66544999 66544876 ID=Msa0515320-mRNA-1:exon:17106;Parent=Msa0515320-mRNA-1
chr3_4 exon 66545584 66545857 66545584 ID=Msa0515320-mRNA-1:exon:17107;Parent=Msa0515320-mRNA-1
chr3_4 exon 66546667 66547016 66546667 ID=Msa0515320-mRNA-1:exon:17108;Parent=Msa0515320-mRNA-1
chr3_4 five_prime_UTR 66540681 66541118 66540681 ID=Msa0515320-mRNA-1:five_prime_utr;Parent=Msa0515320-mRNA-1
chr3_4 five_prime_UTR 66541410 66541447 66541410 ID=Msa0515320-mRNA-1:five_prime_utr;Parent=Msa0515320-mRNA-1
chr3_4 CDS 66541448 66542792 66541448 ID=Msa0515320-mRNA-1:cds;Parent=Msa0515320-mRNA-1
chr3_4 CDS 66542897 66543091 66542897 ID=Msa0515320-mRNA-1:cds;Parent=Msa0515320-mRNA-1
chr3_4 CDS 66543522 66543673 66543522 ID=Msa0515320-mRNA-1:cds;Parent=Msa0515320-mRNA-1
chr3_4 CDS 66543789 66544227 66543789 ID=Msa0515320-mRNA-1:cds;Parent=Msa0515320-mRNA-1
chr3_4 CDS 66544314 66544351 66544314 ID=Msa0515320-mRNA-1:cds;Parent=Msa0515320-mRNA-1
chr3_4 CDS 66544595 66544703 66544595 ID=Msa0515320-mRNA-1:cds;Parent=Msa0515320-mRNA-1
chr3_4 CDS 66544876 66544999 66544876 ID=Msa0515320-mRNA-1:cds;Parent=Msa0515320-mRNA-1
chr3_4 CDS 66545584 66545857 66545584 ID=Msa0515320-mRNA-1:cds;Parent=Msa0515320-mRNA-1
chr3_4 CDS 66546667 66546774 66546667 ID=Msa0515320-mRNA-1:cds;Parent=Msa0515320-mRNA-1
chr3_4 three_prime_UTR 66546775 66547016 66546775 ID=Msa0515320-mRNA-1:three_prime_utr;Parent=Msa0515320-mRNA-1
Gene Sequence

>Msa0515320

ATGTCATCGAATTCAAAATACCCGATTTTGGATGATAAGCCTATCGATAAGTGGAAGGTTACAGAGCTGAAAGAGGAACTGAAAAGAAGGAAGTTGGCTACCAAAGGTTTGAAGGAAGATTTAATTAATCGTTTGGATGAAGCCCTTCGCGAGGAAAGGGAGGCTGCTGAGGCTGCCCGCAAAAAGGAACAGGAGGCTGCTGAGGCTTCCCCCGAACAGGAGGCTGCCGAGGGTTCGAAGAAGGATGAGGTTAACGGTTTGGACACTCAAGTTGATGAGGTAAAAGATTCCAAGACTATTAATGTGGACGCTGGTACAATTCAAGCTTCTGAACAGGGGAATAGTGGTGTAGTTGAACCATTTGAAACGGATAATGTAGCGAAGGTTCCAGAGGTTTTGGATAATGACGGTATTAAGAATGTTGACCAGGATGGTGTCACTGACCCAGTTGACGCTAATAATAGTGTGTCAGCAATGGATCTAGAAGGTGAACATGTGGAATCTGCTAACGCGGGAGAGGAGGCTGTTGCCCATCCTTCTAATGTGGAGACCACTGTTACGGTAACCGAGACTGTGGTCACCGAGACTGTATCAACAGAAGTAGTAGTCGGCGGTCAGGATTCTTGTAGTTCTGAGAAGAATAATGAGGATTCGGCAATCAAGCTAGGGAATGAGGAATCAAAGGCGCAGCTGGATAGTGAGGACTCAAAGCCCCAACTGGAGTCTGACACAAAGCCCCCATGTGACGATCTCATGCCCAACTCTTCCGCTCCAGAAAACCAGGTATCTGAGGTCAACCCTAGTTTAGGGACTCAAGTAAAATCTGATTCTTTTTCTACTGATTCTGTGTCAATTAATCAAAAGAATGAACTAAAGGATACTATAATTGCTAATAATGTCAAATTAGAACAAGATAATGTTAGGCCAGAGATGGTGGAAGAACCATCATCCAGAAATGATGTACCTGTTTATGATGAATCACATTCAGTGGATGTTGGAGGGCTGCATGAAAAAAAGCCATCTGGTGAAGAAAATAACAACAATGTTACGAGTCCAGAGTTGAACAAAACCAATAGTAGTGATGATGTAGGGTATCCAGAAAAGGTGAACTTGGACAGAAGTTCTGGTGATGATTCTATGGAAGAGGACTTGCCTGAGATTAGGCAATATGATTCTAAGTTTAATGATGAACTTAGTGACAAAGTTGAGAATAACGAAGTCCTTATGGGGAAGGAGCAAAGCAAACCAATAGTTGTGGGAGATGGTGTATCCGCAAGAAATAGTGATACCCACCAAGATATGAACATTAGTACTGTTTCCTTGACTGAGAAGCGAAAGTATCCTGAACAAACATTAGTTGGGAACAATGAGCCTGCAAAAAGGCAACGCAGGTGGAACACTGAGGCAGTTAAAGGAGCAGATCTGCAAAGCACTACTCCCAGATCTGCTACTACACCCAAGGACGGGCAAATTACTCTGAAGCGCAACTTATCTAGGTCTAATTCATCTGCAACTGATGATACACCTAAAGAACGCATTGTTCCACCATCTCGAAGAGCCGCAACAAATTCCCTCAGGATTGATCAGTTCCTTCGTCCATTTACCCTAAAAGCTGTGCAAGAACTTCTTGGGAAAACTGGGAGTGTTAGCAGTTTCTGGATGGACCAAATAAAGACTCATTGCTATGTTACTTACTCGTCCACTGAAGAGGCCATTGAAACACGAAATGCCGTGTATAATTTGCAATGGCCTACAAATGGTGGGCGGCTCTTAATTGCTGAGTTTGTTGATCCTGAAGAAGTGAAAATGAAGTTAGAAGCTCCTCCCACTCCTACTCCTGCTGTCAACAGTGCTCCAATAGTTCCTCCCGCACCACCCTCTTCACAGCCAGAGGCTTCCCCTCGTCAGCACAGGGAGCAACATCTTCCAGTCACTCTCCCACCTCCGCCACCATTGGTAAGGCCCCCACCAGTTGCTAGGGAACGCCTTCCATCGCCACCACCCCTTCCTGAGAAAGTGGACCCACCTATTGTCACTCTGGATGATCTCTTCCGTAAAACCACTGCAACTCCTCGGATCTATTATTTACCTTTGTCAGAAGAGCAAGTTGCTGCGAAACTTGCGGCTCAGGTTAGTGGTATTGTGGAAGCTTTGAGTGCATCTTGGCTGATTATTACCTCACTGGCATATTTGGTTTATCTAATAGATGGTTACCAGCAAAATTGGCTTCGTATTCTCTGGGGTTTTGATAGTGCACTGAGCTTCTATTATATATGCGGAGCCCTATTATTTTTTGCCTTGCTTGGCCTTTCTGGGTGCTTCATTACTTGTTATGATCGAAGAGTTCGCAATGATTTGGCTCAACCTTGTAGAGAATTATGTCTTTGTTGCTGTCAACCTGGAGTTTGTGCTGACTGTCATTTGCCAGGCACTCTTTGTTTGTGGACTGATTGCACTGCATGTTTTGAGGGCTGTGGAACCATGGCAACAGAATGTGGTGGTTGTTTGGGAGGTGCTGGGGAAGCAGGGCTACCATTACTATTCATAATGGCTTTGATTGTTCTGGGACTTTTTACAGTAATTGGGATATTTTACAGTGTATTGGTGGCAACTATGGTGGGTCAACGGATATGGCAACGTCACTATCACATACTTGCTAAAAGGATGTTAACAAAGGAGTATGTTGTTGAAGATGTCGATGGAGAGATGACAGGGTCTGATTGGTCTCCTCCAGCCCTCCCAATTGAGCATGTTCAACAATTGAAAACATTGGGCCTCTTATGA
Protein sequence

>Msa0515320

MSSNSKYPILDDKPIDKWKVTELKEELKRRKLATKGLKEDLINRLDEALREEREAAEAARKKEQEAAEASPEQEAAEGSKKDEVNGLDTQVDEVKDSKTINVDAGTIQASEQGNSGVVEPFETDNVAKVPEVLDNDGIKNVDQDGVTDPVDANNSVSAMDLEGEHVESANAGEEAVAHPSNVETTVTVTETVVTETVSTEVVVGGQDSCSSEKNNEDSAIKLGNEESKAQLDSEDSKPQLESDTKPPCDDLMPNSSAPENQVSEVNPSLGTQVKSDSFSTDSVSINQKNELKDTIIANNVKLEQDNVRPEMVEEPSSRNDVPVYDESHSVDVGGLHEKKPSGEENNNNVTSPELNKTNSSDDVGYPEKVNLDRSSGDDSMEEDLPEIRQYDSKFNDELSDKVENNEVLMGKEQSKPIVVGDGVSARNSDTHQDMNISTVSLTEKRKYPEQTLVGNNEPAKRQRRWNTEAVKGADLQSTTPRSATTPKDGQITLKRNLSRSNSSATDDTPKERIVPPSRRAATNSLRIDQFLRPFTLKAVQELLGKTGSVSSFWMDQIKTHCYVTYSSTEEAIETRNAVYNLQWPTNGGRLLIAEFVDPEEVKMKLEAPPTPTPAVNSAPIVPPAPPSSQPEASPRQHREQHLPVTLPPPPPLVRPPPVARERLPSPPPLPEKVDPPIVTLDDLFRKTTATPRIYYLPLSEEQVAAKLAAQVSGIVEALSASWLIITSLAYLVYLIDGYQQNWLRILWGFDSALSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCQPGVCADCHLPGTLCLWTDCTACFEGCGTMATECGGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSDWSPPALPIEHVQQLKTLGLL*