Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0528850 | XP_013456763.1 | 97.391 | 115 | 3 | 0 | 1 | 115 | 1 | 115 | 4.59e-79 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0528850 | sp|Q9LQY3|P24D9_ARATH | 64.706 | 102 | 36 | 0 | 14 | 115 | 12 | 113 | 2.28e-45 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0528850 | I3T547 | 97.391 | 115 | 3 | 0 | 1 | 115 | 1 | 115 | 2.19e-79 | 243 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0528850 | Msa0636700 | 0.888061 | 8.244420e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0528850 | MtrunA17_Chr4g0042721 | 97.391 | 115 | 3 | 0 | 1 | 115 | 1 | 115 | 4.22e-83 | 243 |
| Msa0528850 | MtrunA17_Chr6g0453521 | 65.517 | 87 | 30 | 0 | 22 | 108 | 17 | 103 | 2.11e-40 | 135 |
| Msa0528850 | MtrunA17_Chr5g0417891 | 50.000 | 122 | 57 | 3 | 1 | 119 | 1 | 121 | 1.09e-39 | 133 |
| Msa0528850 | MtrunA17_Chr5g0417931 | 52.212 | 113 | 47 | 5 | 1 | 107 | 3 | 114 | 1.82e-33 | 117 |
| Msa0528850 | MtrunA17_Chr5g0417901 | 34.161 | 161 | 97 | 4 | 1 | 158 | 3 | 157 | 8.30e-27 | 100 |
| Msa0528850 | MtrunA17_Chr7g0217901 | 58.824 | 68 | 23 | 1 | 13 | 75 | 4 | 71 | 1.02e-22 | 85.9 |
| Msa0528850 | MtrunA17_Chr3g0114751 | 40.000 | 100 | 51 | 3 | 15 | 108 | 14 | 110 | 6.66e-21 | 85.1 |
| Msa0528850 | MtrunA17_Chr2g0277981 | 40.594 | 101 | 55 | 3 | 12 | 112 | 7 | 102 | 4.69e-20 | 82.4 |
| Msa0528850 | MtrunA17_Chr5g0423921 | 40.659 | 91 | 48 | 2 | 25 | 115 | 27 | 111 | 3.60e-19 | 80.5 |
| Msa0528850 | MtrunA17_Chr8g0380801 | 35.354 | 99 | 52 | 2 | 15 | 109 | 13 | 103 | 5.31e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0528850 | AT1G26690.1 | 64.706 | 102 | 36 | 0 | 14 | 115 | 12 | 113 | 2.32e-46 | 150 |
| Msa0528850 | AT1G69460.1 | 62.745 | 102 | 38 | 0 | 14 | 115 | 12 | 113 | 2.12e-43 | 143 |
| Msa0528850 | AT1G14010.1 | 57.692 | 104 | 44 | 0 | 12 | 115 | 8 | 111 | 3.87e-41 | 137 |
| Msa0528850 | AT3G29070.1 | 54.839 | 93 | 42 | 0 | 25 | 117 | 34 | 126 | 6.58e-33 | 116 |
| Msa0528850 | AT2G03040.1 | 55.914 | 93 | 40 | 1 | 24 | 115 | 20 | 112 | 5.25e-32 | 112 |
| Msa0528850 | AT2G03290.1 | 55.914 | 93 | 40 | 1 | 24 | 115 | 20 | 112 | 6.00e-32 | 114 |
| Msa0528850 | AT1G09580.1 | 38.095 | 105 | 59 | 2 | 8 | 111 | 12 | 111 | 5.40e-19 | 80.5 |
| Msa0528850 | AT1G21900.1 | 35.714 | 98 | 59 | 2 | 12 | 108 | 13 | 107 | 1.24e-16 | 73.9 |
| Msa0528850 | AT1G57620.1 | 30.928 | 97 | 59 | 3 | 14 | 107 | 11 | 102 | 1.35e-11 | 60.5 |
Find 27 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGTCTTCTGAGATGCATT+TGG | 0.409852 | 4_1:-1813393 | None:intergenic |
| GGTAAAGGGTAACCCTCGTT+GGG | 0.443213 | 4_1:-1813458 | None:intergenic |
| TATGGAGATCGTGTTCAATC+TGG | 0.449834 | 4_1:+1813626 | Msa0528850:CDS |
| GCATTTGTTGCTGCAGAAGC+TGG | 0.459925 | 4_1:+1813656 | Msa0528850:CDS |
| CATGGAAATAACTATCACTA+TGG | 0.460188 | 4_1:+1813608 | Msa0528850:CDS |
| ACGGTGATTCTGTGTGAATC+AGG | 0.470784 | 4_1:-1813479 | None:intergenic |
| TTCTGTGTGAATCAGGTAAA+GGG | 0.476873 | 4_1:-1813472 | None:intergenic |
| GGAGGAAGAAGAAAGAGTAA+AGG | 0.484211 | 4_1:+1813998 | Msa0528850:CDS |
| AGGAGTAGAAGTAGAAGAAG+AGG | 0.488866 | 4_1:+1813977 | Msa0528850:CDS |
| ATTCAGTGGAAGATGAAAAC+AGG | 0.491337 | 4_1:-1813340 | None:intergenic |
| AGAAGAAAGAGTAAAGGAAG+AGG | 0.492062 | 4_1:+1814004 | Msa0528850:CDS |
| AAAAGCAATTCCATGACTGT+TGG | 0.505073 | 4_1:+1813416 | Msa0528850:CDS |
| ATTCTGTGTGAATCAGGTAA+AGG | 0.528712 | 4_1:-1813473 | None:intergenic |
| GTTTAGGTTACATCGTCTCA+TGG | 0.531885 | 4_1:+1813590 | Msa0528850:intron |
| AAGATTTGAGTTCAAATCTG+AGG | 0.534501 | 4_1:-1813364 | None:intergenic |
| AGATTTGAGTTCAAATCTGA+GGG | 0.538909 | 4_1:-1813363 | None:intergenic |
| AGTAGAAGTAGAAGAAGAGG+AGG | 0.539062 | 4_1:+1813980 | Msa0528850:CDS |
| ATTCACACAGAATCACCGTC+AGG | 0.545208 | 4_1:+1813483 | Msa0528850:CDS |
| TTCAAATCTGAGGGATTCAG+TGG | 0.571693 | 4_1:-1813354 | None:intergenic |
| AGGTAAAGGGTAACCCTCGT+TGG | 0.582707 | 4_1:-1813459 | None:intergenic |
| GGTGTACTTTCCAACAGTCA+TGG | 0.589902 | 4_1:-1813426 | None:intergenic |
| ACCCTCGTTGGGGTTAACGA+TGG | 0.671660 | 4_1:-1813447 | None:intergenic |
| TTCACACAGAATCACCGTCA+GGG | 0.676656 | 4_1:+1813484 | Msa0528850:CDS |
| GGCTGCTGAGAATAAACCTG+AGG | 0.691504 | 4_1:+1813700 | Msa0528850:CDS |
| GTAAAGGGTAACCCTCGTTG+GGG | 0.701463 | 4_1:-1813457 | None:intergenic |
| CACCATCGTTAACCCCAACG+AGG | 0.704046 | 4_1:+1813445 | Msa0528850:CDS |
| ACCATCGTTAACCCCAACGA+GGG | 0.730690 | 4_1:+1813446 | Msa0528850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTGATTTTTTTTTTC+TGG | + | chr4_1:1813567-1813586 | Msa0528850:intron | 10.0% |
| !!! | AATTTTGATTTTTTTTTTCT+GGG | + | chr4_1:1813568-1813587 | Msa0528850:intron | 10.0% |
| !!! | AAATTTTGATTTTTTTTTTC+TGG | + | chr4_1:1813567-1813586 | Msa0528850:intron | 10.0% |
| !!! | AATTTTGATTTTTTTTTTCT+GGG | + | chr4_1:1813568-1813587 | Msa0528850:intron | 10.0% |
| !! | NNNNNNNNAGACACTTTATT+AGG | + | chr4_1:1813844-1813863 | Msa0528850:intron | 15.0% |
| !! | NNNNNNNNAGACACTTTATT+AGG | + | chr4_1:1813844-1813863 | Msa0528850:intron | 15.0% |
| !!! | ATTCAACTGTTTTTGATTAA+TGG | + | chr4_1:1813537-1813556 | Msa0528850:intron | 20.0% |
| !!! | TTCAACTGTTTTTGATTAAT+GGG | + | chr4_1:1813538-1813557 | Msa0528850:intron | 20.0% |
| !!! | ATTCAACTGTTTTTGATTAA+TGG | + | chr4_1:1813537-1813556 | Msa0528850:intron | 20.0% |
| !!! | TTCAACTGTTTTTGATTAAT+GGG | + | chr4_1:1813538-1813557 | Msa0528850:intron | 20.0% |
| !! | AAAGATGAAAAAAGGGTTTT+GGG | - | chr4_1:1813304-1813323 | None:intergenic | 25.0% |
| ! | AGAAGAGAAAGATGAAAAAA+GGG | - | chr4_1:1813311-1813330 | None:intergenic | 25.0% |
| ! | TAGAAGAGAAAGATGAAAAA+AGG | - | chr4_1:1813312-1813331 | None:intergenic | 25.0% |
| !!! | GATTTTTTTTTTCTGGGTTT+AGG | + | chr4_1:1813574-1813593 | Msa0528850:intron | 25.0% |
| !!! | TGATTACATGACTTGTTTTT+GGG | + | chr4_1:1813679-1813698 | Msa0528850:CDS | 25.0% |
| !! | TCTTTTTCTTTGAATCATTG+AGG | - | chr4_1:1813898-1813917 | None:intergenic | 25.0% |
| !! | AAAGATGAAAAAAGGGTTTT+GGG | - | chr4_1:1813304-1813323 | None:intergenic | 25.0% |
| ! | AGAAGAGAAAGATGAAAAAA+GGG | - | chr4_1:1813311-1813330 | None:intergenic | 25.0% |
| ! | TAGAAGAGAAAGATGAAAAA+AGG | - | chr4_1:1813312-1813331 | None:intergenic | 25.0% |
| !!! | GATTTTTTTTTTCTGGGTTT+AGG | + | chr4_1:1813574-1813593 | Msa0528850:intron | 25.0% |
| !!! | TGATTACATGACTTGTTTTT+GGG | + | chr4_1:1813679-1813698 | Msa0528850:CDS | 25.0% |
| !! | TCTTTTTCTTTGAATCATTG+AGG | - | chr4_1:1813898-1813917 | None:intergenic | 25.0% |
| ! | GAAAGATGAAAAAAGGGTTT+TGG | - | chr4_1:1813305-1813324 | None:intergenic | 30.0% |
| ! | AGATTTGAGTTCAAATCTGA+GGG | - | chr4_1:1813366-1813385 | None:intergenic | 30.0% |
| ! | AAGATTTGAGTTCAAATCTG+AGG | - | chr4_1:1813367-1813386 | None:intergenic | 30.0% |
| GAATTTGATTCAAAGCAGTT+TGG | - | chr4_1:1813521-1813540 | None:intergenic | 30.0% | |
| CATGGAAATAACTATCACTA+TGG | + | chr4_1:1813608-1813627 | Msa0528850:CDS | 30.0% | |
| !!! | GTGATTACATGACTTGTTTT+TGG | + | chr4_1:1813678-1813697 | Msa0528850:CDS | 30.0% |
| ! | GAAAGATGAAAAAAGGGTTT+TGG | - | chr4_1:1813305-1813324 | None:intergenic | 30.0% |
| ! | AGATTTGAGTTCAAATCTGA+GGG | - | chr4_1:1813366-1813385 | None:intergenic | 30.0% |
| ! | AAGATTTGAGTTCAAATCTG+AGG | - | chr4_1:1813367-1813386 | None:intergenic | 30.0% |
| GAATTTGATTCAAAGCAGTT+TGG | - | chr4_1:1813521-1813540 | None:intergenic | 30.0% | |
| CATGGAAATAACTATCACTA+TGG | + | chr4_1:1813608-1813627 | Msa0528850:CDS | 30.0% | |
| !!! | GTGATTACATGACTTGTTTT+TGG | + | chr4_1:1813678-1813697 | Msa0528850:CDS | 30.0% |
| !!! | GAAAAAAGGGTTTTGGGTTA+AGG | - | chr4_1:1813298-1813317 | None:intergenic | 35.0% |
| ATTCAGTGGAAGATGAAAAC+AGG | - | chr4_1:1813343-1813362 | None:intergenic | 35.0% | |
| AAAAGCAATTCCATGACTGT+TGG | + | chr4_1:1813416-1813435 | Msa0528850:CDS | 35.0% | |
| TTCTGTGTGAATCAGGTAAA+GGG | - | chr4_1:1813475-1813494 | None:intergenic | 35.0% | |
| ATTCTGTGTGAATCAGGTAA+AGG | - | chr4_1:1813476-1813495 | None:intergenic | 35.0% | |
| !! | CGTTGACTATTGATTTGGAA+TGG | + | chr4_1:1813726-1813745 | Msa0528850:intron | 35.0% |
| GAAGAAGAAGAAGAAGAAGA+AGG | + | chr4_1:1813954-1813973 | Msa0528850:CDS | 35.0% | |
| AGAAGAAAGAGTAAAGGAAG+AGG | + | chr4_1:1814004-1814023 | Msa0528850:CDS | 35.0% | |
| !!! | GAAAAAAGGGTTTTGGGTTA+AGG | - | chr4_1:1813298-1813317 | None:intergenic | 35.0% |
| ATTCAGTGGAAGATGAAAAC+AGG | - | chr4_1:1813343-1813362 | None:intergenic | 35.0% | |
| AAAAGCAATTCCATGACTGT+TGG | + | chr4_1:1813416-1813435 | Msa0528850:CDS | 35.0% | |
| TTCTGTGTGAATCAGGTAAA+GGG | - | chr4_1:1813475-1813494 | None:intergenic | 35.0% | |
| ATTCTGTGTGAATCAGGTAA+AGG | - | chr4_1:1813476-1813495 | None:intergenic | 35.0% | |
| !! | CGTTGACTATTGATTTGGAA+TGG | + | chr4_1:1813726-1813745 | Msa0528850:intron | 35.0% |
| GAAGAAGAAGAAGAAGAAGA+AGG | + | chr4_1:1813954-1813973 | Msa0528850:CDS | 35.0% | |
| AGAAGAAAGAGTAAAGGAAG+AGG | + | chr4_1:1814004-1814023 | Msa0528850:CDS | 35.0% | |
| TTCAAATCTGAGGGATTCAG+TGG | - | chr4_1:1813357-1813376 | None:intergenic | 40.0% | |
| !! | GATGTCTTCTGAGATGCATT+TGG | - | chr4_1:1813396-1813415 | None:intergenic | 40.0% |
| ! | GTTTAGGTTACATCGTCTCA+TGG | + | chr4_1:1813590-1813609 | Msa0528850:intron | 40.0% |
| TATGGAGATCGTGTTCAATC+TGG | + | chr4_1:1813626-1813645 | Msa0528850:CDS | 40.0% | |
| ! | GGTGACGTTGACTATTGATT+TGG | + | chr4_1:1813721-1813740 | Msa0528850:intron | 40.0% |
| AGGAGTAGAAGTAGAAGAAG+AGG | + | chr4_1:1813977-1813996 | Msa0528850:CDS | 40.0% | |
| AGTAGAAGTAGAAGAAGAGG+AGG | + | chr4_1:1813980-1813999 | Msa0528850:CDS | 40.0% | |
| GGAGGAAGAAGAAAGAGTAA+AGG | + | chr4_1:1813998-1814017 | Msa0528850:CDS | 40.0% | |
| TTCAAATCTGAGGGATTCAG+TGG | - | chr4_1:1813357-1813376 | None:intergenic | 40.0% | |
| !! | GATGTCTTCTGAGATGCATT+TGG | - | chr4_1:1813396-1813415 | None:intergenic | 40.0% |
| ! | GTTTAGGTTACATCGTCTCA+TGG | + | chr4_1:1813590-1813609 | Msa0528850:intron | 40.0% |
| TATGGAGATCGTGTTCAATC+TGG | + | chr4_1:1813626-1813645 | Msa0528850:CDS | 40.0% | |
| ! | GGTGACGTTGACTATTGATT+TGG | + | chr4_1:1813721-1813740 | Msa0528850:intron | 40.0% |
| AGGAGTAGAAGTAGAAGAAG+AGG | + | chr4_1:1813977-1813996 | Msa0528850:CDS | 40.0% | |
| AGTAGAAGTAGAAGAAGAGG+AGG | + | chr4_1:1813980-1813999 | Msa0528850:CDS | 40.0% | |
| GGAGGAAGAAGAAAGAGTAA+AGG | + | chr4_1:1813998-1814017 | Msa0528850:CDS | 40.0% | |
| GGTGTACTTTCCAACAGTCA+TGG | - | chr4_1:1813429-1813448 | None:intergenic | 45.0% | |
| ACGGTGATTCTGTGTGAATC+AGG | - | chr4_1:1813482-1813501 | None:intergenic | 45.0% | |
| ATTCACACAGAATCACCGTC+AGG | + | chr4_1:1813483-1813502 | Msa0528850:CDS | 45.0% | |
| TTCACACAGAATCACCGTCA+GGG | + | chr4_1:1813484-1813503 | Msa0528850:CDS | 45.0% | |
| ! | TGGACTTTTGCTTACCCTGA+CGG | - | chr4_1:1813501-1813520 | None:intergenic | 45.0% |
| TCAATAGTCAACGTCACCTC+AGG | - | chr4_1:1813719-1813738 | None:intergenic | 45.0% | |
| ACAATGCTTCCCCTAAGTGT+GGG | - | chr4_1:1813875-1813894 | None:intergenic | 45.0% | |
| GGTGTACTTTCCAACAGTCA+TGG | - | chr4_1:1813429-1813448 | None:intergenic | 45.0% | |
| ACGGTGATTCTGTGTGAATC+AGG | - | chr4_1:1813482-1813501 | None:intergenic | 45.0% | |
| ATTCACACAGAATCACCGTC+AGG | + | chr4_1:1813483-1813502 | Msa0528850:CDS | 45.0% | |
| TTCACACAGAATCACCGTCA+GGG | + | chr4_1:1813484-1813503 | Msa0528850:CDS | 45.0% | |
| ! | TGGACTTTTGCTTACCCTGA+CGG | - | chr4_1:1813501-1813520 | None:intergenic | 45.0% |
| TCAATAGTCAACGTCACCTC+AGG | - | chr4_1:1813719-1813738 | None:intergenic | 45.0% | |
| ACAATGCTTCCCCTAAGTGT+GGG | - | chr4_1:1813875-1813894 | None:intergenic | 45.0% | |
| ACCATCGTTAACCCCAACGA+GGG | + | chr4_1:1813446-1813465 | Msa0528850:CDS | 50.0% | |
| GTAAAGGGTAACCCTCGTTG+GGG | - | chr4_1:1813460-1813479 | None:intergenic | 50.0% | |
| GGTAAAGGGTAACCCTCGTT+GGG | - | chr4_1:1813461-1813480 | None:intergenic | 50.0% | |
| AGGTAAAGGGTAACCCTCGT+TGG | - | chr4_1:1813462-1813481 | None:intergenic | 50.0% | |
| ! | GCATTTGTTGCTGCAGAAGC+TGG | + | chr4_1:1813656-1813675 | Msa0528850:CDS | 50.0% |
| GGCTGCTGAGAATAAACCTG+AGG | + | chr4_1:1813700-1813719 | Msa0528850:CDS | 50.0% | |
| AATGCTTCCCCTAAGTGTGG+GGG | - | chr4_1:1813873-1813892 | None:intergenic | 50.0% | |
| CAATGCTTCCCCTAAGTGTG+GGG | - | chr4_1:1813874-1813893 | None:intergenic | 50.0% | |
| GACAATGCTTCCCCTAAGTG+TGG | - | chr4_1:1813876-1813895 | None:intergenic | 50.0% | |
| ACCATCGTTAACCCCAACGA+GGG | + | chr4_1:1813446-1813465 | Msa0528850:CDS | 50.0% | |
| GTAAAGGGTAACCCTCGTTG+GGG | - | chr4_1:1813460-1813479 | None:intergenic | 50.0% | |
| GGTAAAGGGTAACCCTCGTT+GGG | - | chr4_1:1813461-1813480 | None:intergenic | 50.0% | |
| AGGTAAAGGGTAACCCTCGT+TGG | - | chr4_1:1813462-1813481 | None:intergenic | 50.0% | |
| ! | GCATTTGTTGCTGCAGAAGC+TGG | + | chr4_1:1813656-1813675 | Msa0528850:CDS | 50.0% |
| GGCTGCTGAGAATAAACCTG+AGG | + | chr4_1:1813700-1813719 | Msa0528850:CDS | 50.0% | |
| AATGCTTCCCCTAAGTGTGG+GGG | - | chr4_1:1813873-1813892 | None:intergenic | 50.0% | |
| CAATGCTTCCCCTAAGTGTG+GGG | - | chr4_1:1813874-1813893 | None:intergenic | 50.0% | |
| GACAATGCTTCCCCTAAGTG+TGG | - | chr4_1:1813876-1813895 | None:intergenic | 50.0% | |
| CACCATCGTTAACCCCAACG+AGG | + | chr4_1:1813445-1813464 | Msa0528850:CDS | 55.0% | |
| ACCCTCGTTGGGGTTAACGA+TGG | - | chr4_1:1813450-1813469 | None:intergenic | 55.0% | |
| ATGCTTCCCCTAAGTGTGGG+GGG | - | chr4_1:1813872-1813891 | None:intergenic | 55.0% | |
| CACCATCGTTAACCCCAACG+AGG | + | chr4_1:1813445-1813464 | Msa0528850:CDS | 55.0% | |
| ACCCTCGTTGGGGTTAACGA+TGG | - | chr4_1:1813450-1813469 | None:intergenic | 55.0% | |
| ATGCTTCCCCTAAGTGTGGG+GGG | - | chr4_1:1813872-1813891 | None:intergenic | 55.0% | |
| ATTAGGCCCCCCCCACACTT+AGG | + | chr4_1:1813861-1813880 | Msa0528850:intron | 60.0% | |
| TTAGGCCCCCCCCACACTTA+GGG | + | chr4_1:1813862-1813881 | Msa0528850:intron | 60.0% | |
| TGCTTCCCCTAAGTGTGGGG+GGG | - | chr4_1:1813871-1813890 | None:intergenic | 60.0% | |
| ATTAGGCCCCCCCCACACTT+AGG | + | chr4_1:1813861-1813880 | Msa0528850:intron | 60.0% | |
| TTAGGCCCCCCCCACACTTA+GGG | + | chr4_1:1813862-1813881 | Msa0528850:intron | 60.0% | |
| TGCTTCCCCTAAGTGTGGGG+GGG | - | chr4_1:1813871-1813890 | None:intergenic | 60.0% | |
| TAGGCCCCCCCCACACTTAG+GGG | + | chr4_1:1813863-1813882 | Msa0528850:intron | 65.0% | |
| GCTTCCCCTAAGTGTGGGGG+GGG | - | chr4_1:1813870-1813889 | None:intergenic | 65.0% | |
| TAGGCCCCCCCCACACTTAG+GGG | + | chr4_1:1813863-1813882 | Msa0528850:intron | 65.0% | |
| GCTTCCCCTAAGTGTGGGGG+GGG | - | chr4_1:1813870-1813889 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 1813287 | 1814045 | 1813287 | ID=Msa0528850;Name=Msa0528850 |
| chr4_1 | mRNA | 1813287 | 1814045 | 1813287 | ID=Msa0528850-mRNA-1;Parent=Msa0528850;Name=Msa0528850-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0|0|0.66|1|1|3|0|159 |
| chr4_1 | exon | 1813287 | 1813505 | 1813287 | ID=Msa0528850-mRNA-1:exon:556;Parent=Msa0528850-mRNA-1 |
| chr4_1 | exon | 1813596 | 1813721 | 1813596 | ID=Msa0528850-mRNA-1:exon:557;Parent=Msa0528850-mRNA-1 |
| chr4_1 | exon | 1813911 | 1814045 | 1813911 | ID=Msa0528850-mRNA-1:exon:558;Parent=Msa0528850-mRNA-1 |
| chr4_1 | CDS | 1813287 | 1813505 | 1813287 | ID=Msa0528850-mRNA-1:cds;Parent=Msa0528850-mRNA-1 |
| chr4_1 | CDS | 1813596 | 1813721 | 1813596 | ID=Msa0528850-mRNA-1:cds;Parent=Msa0528850-mRNA-1 |
| chr4_1 | CDS | 1813911 | 1814045 | 1813911 | ID=Msa0528850-mRNA-1:cds;Parent=Msa0528850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
