Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535620 | XP_003604913.1 | 99.042 | 313 | 3 | 0 | 1 | 313 | 1 | 313 | 0.0 | 640 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535620 | sp|Q0PGJ6|AKRC9_ARATH | 69.524 | 315 | 94 | 1 | 1 | 313 | 1 | 315 | 1.60e-169 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535620 | G7JTE4 | 99.042 | 313 | 3 | 0 | 1 | 313 | 1 | 313 | 0.0 | 640 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0535620 | Msa1393420 | 0.804154 | 2.474811e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535620 | MtrunA17_Chr4g0009531 | 99.042 | 313 | 3 | 0 | 1 | 313 | 1 | 313 | 0.0 | 640 |
| Msa0535620 | MtrunA17_Chr8g0368931 | 71.746 | 315 | 87 | 1 | 1 | 313 | 1 | 315 | 3.00e-170 | 474 |
| Msa0535620 | MtrunA17_Chr8g0368921 | 70.533 | 319 | 88 | 3 | 1 | 313 | 1 | 319 | 5.70e-168 | 469 |
| Msa0535620 | MtrunA17_Chr4g0009581 | 70.455 | 308 | 82 | 2 | 5 | 312 | 6 | 304 | 4.72e-151 | 426 |
| Msa0535620 | MtrunA17_Chr7g0239701 | 61.489 | 309 | 118 | 1 | 6 | 313 | 10 | 318 | 9.31e-135 | 385 |
| Msa0535620 | MtrunA17_Chr4g0009621 | 70.042 | 237 | 62 | 2 | 76 | 312 | 1 | 228 | 8.01e-108 | 313 |
| Msa0535620 | MtrunA17_Chr4g0018921 | 41.801 | 311 | 173 | 4 | 9 | 313 | 7 | 315 | 1.17e-85 | 260 |
| Msa0535620 | MtrunA17_Chr6g0480011 | 43.450 | 313 | 167 | 5 | 10 | 313 | 11 | 322 | 2.52e-83 | 254 |
| Msa0535620 | MtrunA17_Chr6g0480021 | 41.987 | 312 | 152 | 7 | 10 | 312 | 11 | 302 | 4.01e-80 | 245 |
| Msa0535620 | MtrunA17_Chr3g0121001 | 44.876 | 283 | 150 | 5 | 15 | 291 | 20 | 302 | 2.55e-77 | 238 |
| Msa0535620 | MtrunA17_Chr1g0173621 | 40.717 | 307 | 165 | 7 | 14 | 312 | 18 | 315 | 6.58e-75 | 232 |
| Msa0535620 | MtrunA17_Chr7g0243551 | 44.803 | 279 | 151 | 3 | 6 | 283 | 13 | 289 | 3.80e-74 | 230 |
| Msa0535620 | MtrunA17_Chr6g0479981 | 38.854 | 314 | 172 | 7 | 10 | 310 | 11 | 317 | 5.97e-74 | 230 |
| Msa0535620 | MtrunA17_Chr5g0447951 | 43.098 | 297 | 152 | 6 | 15 | 299 | 19 | 310 | 5.03e-67 | 212 |
| Msa0535620 | MtrunA17_Chr5g0447961 | 43.098 | 297 | 152 | 6 | 15 | 299 | 19 | 310 | 5.03e-67 | 212 |
| Msa0535620 | MtrunA17_Chr5g0447941 | 43.098 | 297 | 152 | 6 | 15 | 299 | 19 | 310 | 9.71e-67 | 211 |
| Msa0535620 | MtrunA17_Chr4g0036051 | 39.519 | 291 | 160 | 5 | 10 | 286 | 5 | 293 | 7.38e-64 | 204 |
| Msa0535620 | MtrunA17_Chr4g0036261 | 46.961 | 181 | 93 | 2 | 135 | 313 | 5 | 184 | 5.06e-54 | 174 |
| Msa0535620 | MtrunA17_Chr4g0036321 | 44.633 | 177 | 85 | 3 | 143 | 312 | 1 | 171 | 6.88e-46 | 153 |
| Msa0535620 | MtrunA17_Chr4g0036301 | 43.503 | 177 | 87 | 3 | 143 | 312 | 1 | 171 | 1.81e-45 | 152 |
| Msa0535620 | MtrunA17_Chr6g0479811 | 39.252 | 107 | 63 | 1 | 183 | 287 | 1 | 107 | 2.81e-21 | 87.0 |
| Msa0535620 | MtrunA17_Chr4g0036291 | 42.105 | 95 | 51 | 2 | 10 | 100 | 11 | 105 | 4.39e-18 | 78.6 |
| Msa0535620 | MtrunA17_Chr4g0036311 | 41.053 | 95 | 52 | 3 | 10 | 100 | 11 | 105 | 1.38e-17 | 77.0 |
| Msa0535620 | MtrunA17_Chr4g0036251 | 43.478 | 92 | 48 | 2 | 10 | 100 | 11 | 99 | 2.81e-17 | 75.9 |
| Msa0535620 | MtrunA17_Chr3g0127491 | 24.159 | 327 | 188 | 10 | 16 | 293 | 46 | 361 | 1.52e-14 | 73.6 |
| Msa0535620 | MtrunA17_Chr6g0479791 | 37.931 | 87 | 51 | 2 | 228 | 312 | 18 | 103 | 6.72e-14 | 67.0 |
| Msa0535620 | MtrunA17_Chr4g0009611 | 71.795 | 39 | 11 | 0 | 5 | 43 | 6 | 44 | 8.20e-14 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535620 | AT2G37770.2 | 69.524 | 315 | 94 | 1 | 1 | 313 | 1 | 315 | 1.63e-170 | 476 |
| Msa0535620 | AT2G37790.1 | 68.571 | 315 | 96 | 2 | 1 | 313 | 1 | 314 | 8.47e-165 | 461 |
| Msa0535620 | AT3G53880.1 | 68.571 | 315 | 97 | 1 | 1 | 313 | 1 | 315 | 1.57e-158 | 445 |
| Msa0535620 | AT2G37760.2 | 66.032 | 315 | 101 | 2 | 1 | 313 | 1 | 311 | 2.48e-154 | 434 |
| Msa0535620 | AT2G37760.1 | 66.032 | 315 | 101 | 2 | 1 | 313 | 1 | 311 | 2.48e-154 | 434 |
| Msa0535620 | AT3G53880.2 | 70.383 | 287 | 83 | 1 | 1 | 285 | 1 | 287 | 2.25e-145 | 412 |
| Msa0535620 | AT2G37760.4 | 67.010 | 291 | 90 | 2 | 1 | 289 | 1 | 287 | 1.98e-142 | 404 |
| Msa0535620 | AT2G37760.3 | 67.010 | 291 | 90 | 2 | 1 | 289 | 1 | 287 | 1.98e-142 | 404 |
| Msa0535620 | AT2G37760.5 | 67.128 | 289 | 89 | 2 | 1 | 287 | 1 | 285 | 1.26e-141 | 401 |
| Msa0535620 | AT2G37760.6 | 67.954 | 259 | 81 | 1 | 57 | 313 | 7 | 265 | 3.65e-128 | 366 |
| Msa0535620 | AT2G37760.7 | 67.954 | 259 | 81 | 1 | 57 | 313 | 7 | 265 | 3.65e-128 | 366 |
| Msa0535620 | AT2G37770.1 | 72.059 | 204 | 57 | 0 | 1 | 204 | 1 | 204 | 1.38e-109 | 320 |
| Msa0535620 | AT5G01670.1 | 45.338 | 311 | 165 | 5 | 5 | 312 | 13 | 321 | 1.40e-91 | 275 |
| Msa0535620 | AT5G01670.2 | 42.090 | 335 | 162 | 6 | 8 | 312 | 16 | 348 | 1.22e-85 | 261 |
| Msa0535620 | AT5G62420.1 | 43.269 | 312 | 168 | 5 | 9 | 313 | 7 | 316 | 1.32e-85 | 260 |
| Msa0535620 | AT1G59960.1 | 42.020 | 307 | 168 | 6 | 16 | 313 | 21 | 326 | 1.59e-77 | 240 |
| Msa0535620 | AT1G59950.1 | 43.648 | 307 | 163 | 6 | 16 | 313 | 15 | 320 | 1.80e-74 | 232 |
| Msa0535620 | AT2G21250.1 | 40.714 | 280 | 150 | 5 | 10 | 275 | 5 | 282 | 2.07e-71 | 223 |
| Msa0535620 | AT2G21260.1 | 39.286 | 280 | 154 | 5 | 10 | 275 | 5 | 282 | 2.09e-69 | 218 |
| Msa0535620 | AT2G21250.2 | 41.981 | 212 | 112 | 4 | 8 | 210 | 3 | 212 | 1.11e-54 | 178 |
| Msa0535620 | AT2G21260.2 | 35.885 | 209 | 118 | 5 | 81 | 275 | 8 | 214 | 1.85e-39 | 139 |
| Msa0535620 | AT1G06690.1 | 24.735 | 283 | 154 | 9 | 34 | 275 | 90 | 354 | 5.85e-15 | 75.1 |
| Msa0535620 | AT5G53580.1 | 27.273 | 209 | 112 | 6 | 95 | 275 | 145 | 341 | 1.54e-12 | 67.8 |
Find 89 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAAATTGCAGAGAAATT+AGG | 0.199496 | 4_1:+11988681 | Msa0535620:CDS |
| ACAATTGTAATTCAGATTAA+AGG | 0.207226 | 4_1:+11989599 | Msa0535620:three_prime_UTR |
| GCGTATCTGATGACATTTAT+TGG | 0.224914 | 4_1:+11989621 | Msa0535620:three_prime_UTR |
| TATTAGAGCCAGCTATTTAT+AGG | 0.241867 | 4_1:-11985350 | None:intergenic |
| ATCTTGAGTTGTTGAAAGTT+TGG | 0.275998 | 4_1:-11985214 | None:intergenic |
| ATGATTTGAATCATGTTTCT+AGG | 0.294504 | 4_1:-11989782 | None:intergenic |
| AAAATCCCTTCAGTTGGTTT+AGG | 0.304365 | 4_1:+11985451 | Msa0535620:CDS |
| AAGGGGAACAGGTGAATTTA+AGG | 0.304369 | 4_1:+11987674 | Msa0535620:CDS |
| AGCTGTCACCACTGCTGTTC+AGG | 0.310235 | 4_1:+11985507 | Msa0535620:CDS |
| CTGCTTAATTTCAGAAAACT+TGG | 0.316707 | 4_1:-11988838 | None:intergenic |
| TTTATCATGGAAACAGTATC+TGG | 0.318557 | 4_1:-11989509 | None:intergenic |
| ATAGGTGTCGTTAACGAAAA+AGG | 0.330578 | 4_1:-11989391 | None:intergenic |
| TTTCAGAAAACTTGGGAAAC+AGG | 0.330594 | 4_1:-11988830 | None:intergenic |
| AAGAAATTGCAGAGAAATTA+GGG | 0.331646 | 4_1:+11988682 | Msa0535620:CDS |
| CTTCAGTTGGTTTAGGTACA+TGG | 0.350368 | 4_1:+11985458 | Msa0535620:CDS |
| AAAGAAACTTCAAGATCTAT+TGG | 0.353555 | 4_1:+11987800 | Msa0535620:CDS |
| TGATTACCTTGACCTATATC+TGG | 0.355631 | 4_1:+11987008 | Msa0535620:CDS |
| AACTTGGGAAACAGGTCTTC+AGG | 0.356272 | 4_1:-11988822 | None:intergenic |
| TCTGCAATTTCTTTGACAAC+TGG | 0.366535 | 4_1:-11988672 | None:intergenic |
| CTAGCCTCATTAGTGCTCTT+AGG | 0.384199 | 4_1:-11988762 | None:intergenic |
| ACGGTTGAGATTTGATTAGA+TGG | 0.387838 | 4_1:-11985271 | None:intergenic |
| TCCAATGCTTTCCATGTGCT+TGG | 0.405126 | 4_1:-11987723 | None:intergenic |
| AGTGCCTCCAGCTGTTAATC+AGG | 0.409491 | 4_1:+11987833 | Msa0535620:CDS |
| TCTAGCTTTAATCTTTATCA+TGG | 0.413236 | 4_1:-11989522 | None:intergenic |
| TGGTTAAGCGCGAGGAGTTA+TGG | 0.419398 | 4_1:+11986793 | Msa0535620:CDS |
| TGACTTTATCTAGATTGGTT+CGG | 0.420444 | 4_1:+11986743 | Msa0535620:intron |
| GCACTAATGAGGCTAGGATC+AGG | 0.429925 | 4_1:+11988769 | Msa0535620:CDS |
| TTACGTGTTAATGTCTTGTT+CGG | 0.434491 | 4_1:+11989713 | Msa0535620:three_prime_UTR |
| AACTTTGCCTGCTGCCATCC+AGG | 0.436626 | 4_1:-11987867 | None:intergenic |
| GGGATCTCAGATGGATTTGA+AGG | 0.447149 | 4_1:-11985250 | None:intergenic |
| CATCGAAGGGCAACTTGTCC+TGG | 0.456266 | 4_1:-11988711 | None:intergenic |
| TTAGGACCATTGAAGAACTC+TGG | 0.460512 | 4_1:+11989421 | Msa0535620:CDS |
| AACAGCAGTGGTGACAGCTT+TGG | 0.460871 | 4_1:-11985503 | None:intergenic |
| GTGAGCATGAAAAGGGGAAC+AGG | 0.465211 | 4_1:+11987663 | Msa0535620:CDS |
| TATGGATCACCTCAAAACTA+TGG | 0.469262 | 4_1:+11986811 | Msa0535620:CDS |
| AGTTAATGCCTACCAGATAT+AGG | 0.469546 | 4_1:-11987020 | None:intergenic |
| ACTTGGGAAACAGGTCTTCA+GGG | 0.469741 | 4_1:-11988821 | None:intergenic |
| TCTGGCAAGGCTAAAGCTAT+AGG | 0.474064 | 4_1:+11987759 | Msa0535620:CDS |
| ACTGGCCAGTGAGCATGAAA+AGG | 0.479855 | 4_1:+11987655 | Msa0535620:CDS |
| CTGGCCAGTGAGCATGAAAA+GGG | 0.486506 | 4_1:+11987656 | Msa0535620:CDS |
| TAGGACCATTGAAGAACTCT+GGG | 0.489961 | 4_1:+11989422 | Msa0535620:CDS |
| ACCATCCCAGAGTTCTTCAA+TGG | 0.490741 | 4_1:-11989427 | None:intergenic |
| TGATTAGATGGGATCTCAGA+TGG | 0.497616 | 4_1:-11985259 | None:intergenic |
| AGAAGATGTGCCAAAAGCAT+TGG | 0.499100 | 4_1:+11986960 | Msa0535620:CDS |
| CGGTTGAGATTTGATTAGAT+GGG | 0.501657 | 4_1:-11985270 | None:intergenic |
| TGCTTAATTTCAGAAAACTT+GGG | 0.502831 | 4_1:-11988837 | None:intergenic |
| CATGCAGGATAAGCTAATCA+AGG | 0.504025 | 4_1:+11989365 | Msa0535620:intron |
| CAGGACAAGTTGCCCTTCGA+TGG | 0.505645 | 4_1:+11988712 | Msa0535620:CDS |
| TCATAGGGATATTCTCCTCT+AGG | 0.507356 | 4_1:+11988612 | Msa0535620:intron |
| ATTGCATCCTGGATGGCAGC+AGG | 0.516476 | 4_1:+11987860 | Msa0535620:CDS |
| ATACAGAAAGTAACACTTCA+CGG | 0.519492 | 4_1:-11989575 | None:intergenic |
| GGTACATGGCAAGCTGAACC+TGG | 0.529494 | 4_1:+11985472 | Msa0535620:CDS |
| CTGCTTGTAGTCCCCATCGA+AGG | 0.531744 | 4_1:-11988725 | None:intergenic |
| AATCAGGTGGAATTGCATCC+TGG | 0.533764 | 4_1:+11987849 | Msa0535620:CDS |
| ACAGCTTTGGCAACAACACC+AGG | 0.537975 | 4_1:-11985490 | None:intergenic |
| AGGACAAGTTGCCCTTCGAT+GGG | 0.548239 | 4_1:+11988713 | Msa0535620:CDS |
| AAAATCTTGACGTGTACGAT+TGG | 0.549851 | 4_1:+11988793 | Msa0535620:CDS |
| CTTCGATGGGGACTACAAGC+AGG | 0.550658 | 4_1:+11988726 | Msa0535620:CDS |
| GGTGCTAAAATCCCTTCAGT+TGG | 0.556264 | 4_1:+11985445 | Msa0535620:CDS |
| CACTAATGAGGCTAGGATCA+GGG | 0.564278 | 4_1:+11988770 | Msa0535620:CDS |
| ACCAAGCACATGGAAAGCAT+TGG | 0.567964 | 4_1:+11987722 | Msa0535620:CDS |
| AAAATAGAATGAGGATTGAA+CGG | 0.570516 | 4_1:-11985290 | None:intergenic |
| CTAAGAGCACTAATGAGGCT+AGG | 0.572110 | 4_1:+11988763 | Msa0535620:CDS |
| AATGGTCCTAAAAGCACCAT+AGG | 0.572997 | 4_1:-11989409 | None:intergenic |
| TTGGAAGCACTATATGACTC+TGG | 0.576606 | 4_1:+11987741 | Msa0535620:CDS |
| TATTCTCCTCTAGGCTCACC+AGG | 0.581983 | 4_1:+11988621 | Msa0535620:CDS |
| GATGGATTTGAAGGCTAGTG+TGG | 0.584930 | 4_1:-11985241 | None:intergenic |
| GCCTCCAGCTGTTAATCAGG+TGG | 0.597679 | 4_1:+11987836 | Msa0535620:CDS |
| AGGTGGAATTGCATCCTGGA+TGG | 0.599767 | 4_1:+11987853 | Msa0535620:CDS |
| TGCCTACCAGATATAGGTCA+AGG | 0.606192 | 4_1:-11987014 | None:intergenic |
| TGCTTGTAGTCCCCATCGAA+GGG | 0.608407 | 4_1:-11988724 | None:intergenic |
| GCTACCTAAGAGCACTAATG+AGG | 0.608800 | 4_1:+11988758 | Msa0535620:CDS |
| CATGTACCTAAACCAACTGA+AGG | 0.618785 | 4_1:-11985457 | None:intergenic |
| AATTCCACCTGATTAACAGC+TGG | 0.622795 | 4_1:-11987840 | None:intergenic |
| AGACACGACATCAATATACA+TGG | 0.623729 | 4_1:+11989653 | Msa0535620:three_prime_UTR |
| AAAATCTAAGAAATAATGAA+CGG | 0.627305 | 4_1:-11985324 | None:intergenic |
| TCCACCTGATTAACAGCTGG+AGG | 0.631397 | 4_1:-11987837 | None:intergenic |
| GGATGGTGTGGTTAAGCGCG+AGG | 0.635891 | 4_1:+11986785 | Msa0535620:CDS |
| ACCATTGAAGAACTCTGGGA+TGG | 0.639574 | 4_1:+11989426 | Msa0535620:CDS |
| ATGCAGGATAAGCTAATCAA+GGG | 0.646587 | 4_1:+11989366 | Msa0535620:intron |
| AATGTATACCTGAACAGCAG+TGG | 0.652530 | 4_1:-11985515 | None:intergenic |
| GTGCAGACATACCAAGCACA+TGG | 0.659725 | 4_1:+11987712 | Msa0535620:CDS |
| AGCACTATATGACTCTGGCA+AGG | 0.665424 | 4_1:+11987746 | Msa0535620:CDS |
| AGTACTCCTGGTGAGCCTAG+AGG | 0.672177 | 4_1:-11988627 | None:intergenic |
| ATGTACCTAAACCAACTGAA+GGG | 0.674693 | 4_1:-11985456 | None:intergenic |
| AGCTTATAAGAATCAATCAG+AGG | 0.675966 | 4_1:+11986491 | Msa0535620:CDS |
| TGGCCAGTGAGCATGAAAAG+GGG | 0.679544 | 4_1:+11987657 | Msa0535620:CDS |
| GAGAAATTAGGGAAGACACC+AGG | 0.682506 | 4_1:+11988693 | Msa0535620:CDS |
| GGACAAGTTGCCCTTCGATG+GGG | 0.698167 | 4_1:+11988714 | Msa0535620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTATTATTATTATTTA+AGG | + | chr4_1:11989268-11989287 | Msa0535620:intron | 0.0% |
| !!! | AATGTAAAATAATTTGTATT+TGG | - | chr4_1:11985918-11985937 | None:intergenic | 10.0% |
| !!! | CATCTATAAATATTTATTTT+AGG | + | chr4_1:11988907-11988926 | Msa0535620:intron | 10.0% |
| !! | AAAATCTAAGAAATAATGAA+CGG | - | chr4_1:11985327-11985346 | None:intergenic | 15.0% |
| !! | TTCAAAATCAATATTTGTAA+TGG | + | chr4_1:11985976-11985995 | Msa0535620:intron | 15.0% |
| !!! | TTGTAAAATGATTTTTGTTT+GGG | - | chr4_1:11986316-11986335 | None:intergenic | 15.0% |
| !!! | ATTGTAAAATGATTTTTGTT+TGG | - | chr4_1:11986317-11986336 | None:intergenic | 15.0% |
| !!! | AATTTTGTTTTGATAAAAAG+AGG | + | chr4_1:11986657-11986676 | Msa0535620:intron | 15.0% |
| !!! | ATTTTGTTTTGATAAAAAGA+GGG | + | chr4_1:11986658-11986677 | Msa0535620:intron | 15.0% |
| !!! | AAAAAATCAATTGTTTTTTG+AGG | + | chr4_1:11989058-11989077 | Msa0535620:intron | 15.0% |
| !! | TGTAATGTAAAAATAGAATG+AGG | - | chr4_1:11985302-11985321 | None:intergenic | 20.0% |
| !! | CCTATATATAAGAAAAAGTT+AGG | - | chr4_1:11985600-11985619 | None:intergenic | 20.0% |
| !!! | CCTAACTTTTTCTTATATAT+AGG | + | chr4_1:11985597-11985616 | Msa0535620:intron | 20.0% |
| !!! | ATTATTTTTGTTTGAGTAAG+TGG | + | chr4_1:11985650-11985669 | Msa0535620:intron | 20.0% |
| !! | ATTCAAGCTATAATCAATTA+TGG | - | chr4_1:11986117-11986136 | None:intergenic | 20.0% |
| !!! | TAGTAGTTTTAATTATTCCT+AGG | + | chr4_1:11986392-11986411 | Msa0535620:intron | 20.0% |
| !!! | TTTTAATTATTCCTAGGTTT+TGG | + | chr4_1:11986398-11986417 | Msa0535620:intron | 20.0% |
| !! | ACGCTAAAATAAAACAAAAA+TGG | - | chr4_1:11986520-11986539 | None:intergenic | 20.0% |
| !! | ATGTTTGTATCCAAAAATTA+TGG | - | chr4_1:11986600-11986619 | None:intergenic | 20.0% |
| !!! | GTGAATATATGTTGATATTT+TGG | + | chr4_1:11987053-11987072 | Msa0535620:intron | 20.0% |
| !! | AAATTCAATTCAGTTATTAC+CGG | + | chr4_1:11987428-11987447 | Msa0535620:intron | 20.0% |
| !! | TTTATTATTGCAAAATCTTG+AGG | + | chr4_1:11987987-11988006 | Msa0535620:intron | 20.0% |
| !! | TTATTATTGCAAAATCTTGA+GGG | + | chr4_1:11987988-11988007 | Msa0535620:intron | 20.0% |
| !! | TCATTAAGCTCTTTATAAAT+AGG | - | chr4_1:11988476-11988495 | None:intergenic | 20.0% |
| !!! | TTTTTTTCTTCTTATCTCAT+AGG | + | chr4_1:11988596-11988615 | Msa0535620:intron | 20.0% |
| !!! | TTTTTTCTTCTTATCTCATA+GGG | + | chr4_1:11988597-11988616 | Msa0535620:intron | 20.0% |
| !!! | TTATGATTCTGTGTATTTTT+AGG | + | chr4_1:11989550-11989569 | Msa0535620:three_prime_UTR | 20.0% |
| !! | ACAATTGTAATTCAGATTAA+AGG | + | chr4_1:11989599-11989618 | Msa0535620:three_prime_UTR | 20.0% |
| ! | AAAATAGAATGAGGATTGAA+CGG | - | chr4_1:11985293-11985312 | None:intergenic | 25.0% |
| !!! | ATTTTTTGCCTATAAATAGC+TGG | + | chr4_1:11985342-11985361 | Msa0535620:five_prime_UTR | 25.0% |
| ! | CAGAAAAACAAAGAACAAAA+TGG | + | chr4_1:11985390-11985409 | Msa0535620:exon | 25.0% |
| ! | CTATAGTATGAATAGTACTT+CGG | - | chr4_1:11985624-11985643 | None:intergenic | 25.0% |
| ! | TAAGTGGATATTTAGATTGA+CGG | + | chr4_1:11985666-11985685 | Msa0535620:intron | 25.0% |
| !!! | CAAGAATTGATTTTGACTTT+AGG | + | chr4_1:11985823-11985842 | Msa0535620:intron | 25.0% |
| ! | CGTTCAATTTATTGTTCTTA+TGG | + | chr4_1:11985878-11985897 | Msa0535620:intron | 25.0% |
| ! | TACTCTATATCATATGTGTT+TGG | - | chr4_1:11986007-11986026 | None:intergenic | 25.0% |
| ! | CATATGATATAGAGTATGTT+TGG | + | chr4_1:11986011-11986030 | Msa0535620:intron | 25.0% |
| !! | ATGTTTGGTTTCACATTTAA+AGG | + | chr4_1:11986026-11986045 | Msa0535620:intron | 25.0% |
| !!! | GAATCTATTTTGACAATGTT+TGG | + | chr4_1:11986063-11986082 | Msa0535620:intron | 25.0% |
| ! | TATAGCTTGAATCTAGAAAT+TGG | + | chr4_1:11986125-11986144 | Msa0535620:intron | 25.0% |
| !!! | TTTTAGTCATAACTGATTCA+TGG | - | chr4_1:11986207-11986226 | None:intergenic | 25.0% |
| !! | TTATACTCCACCATAATTTT+TGG | + | chr4_1:11986587-11986606 | Msa0535620:intron | 25.0% |
| ! | TTTGTATCCAAAAATTATGG+TGG | - | chr4_1:11986597-11986616 | None:intergenic | 25.0% |
| ! | TTTCTTGACTTTATCTAGAT+TGG | + | chr4_1:11986738-11986757 | Msa0535620:intron | 25.0% |
| !!! | TGTTCTGTTTTTAAGAATGT+TGG | + | chr4_1:11986860-11986879 | Msa0535620:intron | 25.0% |
| !!! | GTTGGAAAAATGTTTGTTTT+AGG | + | chr4_1:11986878-11986897 | Msa0535620:intron | 25.0% |
| !!! | AAAGTTTTATCCAATGCTTT+TGG | - | chr4_1:11986973-11986992 | None:intergenic | 25.0% |
| !! | TTTTTATACTTCTTGGATTG+AGG | + | chr4_1:11987130-11987149 | Msa0535620:intron | 25.0% |
| ! | AAACCAACTTCATAATTCAT+TGG | - | chr4_1:11987517-11987536 | None:intergenic | 25.0% |
| ! | AAAGAAACTTCAAGATCTAT+TGG | + | chr4_1:11987800-11987819 | Msa0535620:CDS | 25.0% |
| ! | GTAACATTTCGATTGATTAA+GGG | + | chr4_1:11988100-11988119 | Msa0535620:intron | 25.0% |
| !!! | AGATTGTTTGGGATATTTTA+TGG | + | chr4_1:11988181-11988200 | Msa0535620:intron | 25.0% |
| ! | TTGTAGAGACATTTCATAAA+CGG | - | chr4_1:11988210-11988229 | None:intergenic | 25.0% |
| !!! | GTTGTTTTCATAAATTGTCT+TGG | - | chr4_1:11988263-11988282 | None:intergenic | 25.0% |
| ! | AAAGAAATTGCAGAGAAATT+AGG | + | chr4_1:11988681-11988700 | Msa0535620:CDS | 25.0% |
| ! | AAGAAATTGCAGAGAAATTA+GGG | + | chr4_1:11988682-11988701 | Msa0535620:CDS | 25.0% |
| ! | TGCTTAATTTCAGAAAACTT+GGG | - | chr4_1:11988840-11988859 | None:intergenic | 25.0% |
| ! | TGTCATAACAAATGCAAATT+TGG | + | chr4_1:11989000-11989019 | Msa0535620:intron | 25.0% |
| ! | CTGCAATAATCAAAGATATA+TGG | - | chr4_1:11989090-11989109 | None:intergenic | 25.0% |
| !! | AGTATTTTTCCACAATATCA+AGG | - | chr4_1:11989135-11989154 | None:intergenic | 25.0% |
| ! | ATATTGTGGAAAAATACTGT+TGG | + | chr4_1:11989137-11989156 | Msa0535620:intron | 25.0% |
| ! | GAGTGTAAATACAATAAGTA+AGG | + | chr4_1:11989307-11989326 | Msa0535620:intron | 25.0% |
| !!! | TCTAGCTTTAATCTTTATCA+TGG | - | chr4_1:11989525-11989544 | None:intergenic | 25.0% |
| TATTAGAGCCAGCTATTTAT+AGG | - | chr4_1:11985353-11985372 | None:intergenic | 30.0% | |
| CAACTGAAAAAACTTGATTG+CGG | - | chr4_1:11985419-11985438 | None:intergenic | 30.0% | |
| !!! | AAGTTTTTTCAGTTGAACAC+TGG | + | chr4_1:11985424-11985443 | Msa0535620:CDS | 30.0% |
| GACGTATCTGATTCAAAATT+TGG | + | chr4_1:11985556-11985575 | Msa0535620:intron | 30.0% | |
| ATTTAGATTGACGGTGAATT+TGG | + | chr4_1:11985675-11985694 | Msa0535620:intron | 30.0% | |
| ATGACTAAAAATGTAGACGT+TGG | + | chr4_1:11986217-11986236 | Msa0535620:intron | 30.0% | |
| TCACATTGAATACCAAAAAG+CGG | - | chr4_1:11986246-11986265 | None:intergenic | 30.0% | |
| !! | ATTTCTAGCTTCATAGTCAA+TGG | - | chr4_1:11986274-11986293 | None:intergenic | 30.0% |
| !! | TAATTATTCCTAGGTTTTGG+AGG | + | chr4_1:11986401-11986420 | Msa0535620:intron | 30.0% |
| !! | AGATGTCTATGTTTTTGTTC+AGG | + | chr4_1:11986440-11986459 | Msa0535620:intron | 30.0% |
| AGCTTATAAGAATCAATCAG+AGG | + | chr4_1:11986491-11986510 | Msa0535620:CDS | 30.0% | |
| ! | AGTCAATTTGCTTGAAGTTA+AGG | - | chr4_1:11986709-11986728 | None:intergenic | 30.0% |
| ! | TGACTTTATCTAGATTGGTT+CGG | + | chr4_1:11986743-11986762 | Msa0535620:intron | 30.0% |
| !! | ATAAACAGACCATAGTTTTG+AGG | - | chr4_1:11986823-11986842 | None:intergenic | 30.0% |
| TGAAACAGTAAACAAAGCAA+AGG | - | chr4_1:11986921-11986940 | None:intergenic | 30.0% | |
| !! | TTTGCTTTGTTTACTGTTTC+AGG | + | chr4_1:11986920-11986939 | Msa0535620:intron | 30.0% |
| AAATTGATACCATGTGACAT+TGG | + | chr4_1:11987094-11987113 | Msa0535620:intron | 30.0% | |
| !!! | GGGGATTTTTTTATACTTCT+TGG | + | chr4_1:11987123-11987142 | Msa0535620:intron | 30.0% |
| TTGAATGTAACCATATGTGT+TGG | + | chr4_1:11987242-11987261 | Msa0535620:intron | 30.0% | |
| AAATAAGTAGCACTAACACA+CGG | - | chr4_1:11987305-11987324 | None:intergenic | 30.0% | |
| !! | TGTGTTAGTGCTACTTATTT+GGG | + | chr4_1:11987305-11987324 | Msa0535620:intron | 30.0% |
| ATACACGACATTGAAAATAC+CGG | - | chr4_1:11987450-11987469 | None:intergenic | 30.0% | |
| CGTAACATTTCGATTGATTA+AGG | + | chr4_1:11988099-11988118 | Msa0535620:intron | 30.0% | |
| CTGCTTAATTTCAGAAAACT+TGG | - | chr4_1:11988841-11988860 | None:intergenic | 30.0% | |
| !!! | CAAGTTTTCTGAAATTAAGC+AGG | + | chr4_1:11988839-11988858 | Msa0535620:CDS | 30.0% |
| ATTGCATAGAGATATAGTGA+TGG | - | chr4_1:11988977-11988996 | None:intergenic | 30.0% | |
| TCACTATATCTCTATGCAAT+TGG | + | chr4_1:11988977-11988996 | Msa0535620:intron | 30.0% | |
| !!! | AACAGTATCTGGTTTTATTG+TGG | - | chr4_1:11989501-11989520 | None:intergenic | 30.0% |
| TTTATCATGGAAACAGTATC+TGG | - | chr4_1:11989512-11989531 | None:intergenic | 30.0% | |
| ATACAGAAAGTAACACTTCA+CGG | - | chr4_1:11989578-11989597 | None:intergenic | 30.0% | |
| ! | TTACGTGTTAATGTCTTGTT+CGG | + | chr4_1:11989713-11989732 | Msa0535620:three_prime_UTR | 30.0% |
| CGGTTGAGATTTGATTAGAT+GGG | - | chr4_1:11985273-11985292 | None:intergenic | 35.0% | |
| ACGGTTGAGATTTGATTAGA+TGG | - | chr4_1:11985274-11985293 | None:intergenic | 35.0% | |
| ! | AAAATCCCTTCAGTTGGTTT+AGG | + | chr4_1:11985451-11985470 | Msa0535620:CDS | 35.0% |
| ATGTACCTAAACCAACTGAA+GGG | - | chr4_1:11985459-11985478 | None:intergenic | 35.0% | |
| AAATCGCGGCACTTTAATTA+TGG | - | chr4_1:11985740-11985759 | None:intergenic | 35.0% | |
| !!! | TGTTGACTTTTGCAAAATCG+CGG | - | chr4_1:11985754-11985773 | None:intergenic | 35.0% |
| !! | GTCAACACGATTGATTTTAG+AGG | + | chr4_1:11985767-11985786 | Msa0535620:intron | 35.0% |
| !! | GTCTATGTTTTTGTTCAGGT+TGG | + | chr4_1:11986444-11986463 | Msa0535620:intron | 35.0% |
| TATGGATCACCTCAAAACTA+TGG | + | chr4_1:11986811-11986830 | Msa0535620:CDS | 35.0% | |
| TGATTACCTTGACCTATATC+TGG | + | chr4_1:11987008-11987027 | Msa0535620:CDS | 35.0% | |
| AGTTAATGCCTACCAGATAT+AGG | - | chr4_1:11987023-11987042 | None:intergenic | 35.0% | |
| !! | GTGTGTTAGTGCTACTTATT+TGG | + | chr4_1:11987304-11987323 | Msa0535620:intron | 35.0% |
| ! | TAATCACATGTGTCATTGCT+GGG | - | chr4_1:11987409-11987428 | None:intergenic | 35.0% |
| ! | TTAATCACATGTGTCATTGC+TGG | - | chr4_1:11987410-11987429 | None:intergenic | 35.0% |
| ! | GGTATTTTCAATGTCGTGTA+TGG | + | chr4_1:11987449-11987468 | Msa0535620:intron | 35.0% |
| GTGCCAATGAATTATGAAGT+TGG | + | chr4_1:11987511-11987530 | Msa0535620:intron | 35.0% | |
| CTCAATTGAGTAATCTGCAT+TGG | + | chr4_1:11987564-11987583 | Msa0535620:intron | 35.0% | |
| ! | ATTTCGTTTTGTAGATCCAC+TGG | + | chr4_1:11987637-11987656 | Msa0535620:intron | 35.0% |
| ! | CATGCATTTTGCGAATCAAA+AGG | + | chr4_1:11987891-11987910 | Msa0535620:CDS | 35.0% |
| ATTGCAAAATCTTGAGGGAT+CGG | + | chr4_1:11987993-11988012 | Msa0535620:intron | 35.0% | |
| ! | CGATTGATTAAGGGTCTTTT+TGG | + | chr4_1:11988109-11988128 | Msa0535620:intron | 35.0% |
| !! | CACTTGTTGTGAGATTGTTT+GGG | + | chr4_1:11988170-11988189 | Msa0535620:intron | 35.0% |
| ATGCTATAAGTGCTCGATTA+AGG | + | chr4_1:11988402-11988421 | Msa0535620:intron | 35.0% | |
| TCTGCAATTTCTTTGACAAC+TGG | - | chr4_1:11988675-11988694 | None:intergenic | 35.0% | |
| AAAATCTTGACGTGTACGAT+TGG | + | chr4_1:11988793-11988812 | Msa0535620:CDS | 35.0% | |
| TTTCAGAAAACTTGGGAAAC+AGG | - | chr4_1:11988833-11988852 | None:intergenic | 35.0% | |
| TCCTGATGACATTTGAACTA+TGG | + | chr4_1:11989031-11989050 | Msa0535620:intron | 35.0% | |
| TCCATAGTTCAAATGTCATC+AGG | - | chr4_1:11989035-11989054 | None:intergenic | 35.0% | |
| ACATTGAAACTTACACATGC+AGG | + | chr4_1:11989350-11989369 | Msa0535620:intron | 35.0% | |
| ATGCAGGATAAGCTAATCAA+GGG | + | chr4_1:11989366-11989385 | Msa0535620:intron | 35.0% | |
| !! | ATAGGTGTCGTTAACGAAAA+AGG | - | chr4_1:11989394-11989413 | None:intergenic | 35.0% |
| ! | TTTTTCGTTAACGACACCTA+TGG | + | chr4_1:11989393-11989412 | Msa0535620:CDS | 35.0% |
| GCGTATCTGATGACATTTAT+TGG | + | chr4_1:11989621-11989640 | Msa0535620:three_prime_UTR | 35.0% | |
| AGACACGACATCAATATACA+TGG | + | chr4_1:11989653-11989672 | Msa0535620:three_prime_UTR | 35.0% | |
| TGATTAGATGGGATCTCAGA+TGG | - | chr4_1:11985262-11985281 | None:intergenic | 40.0% | |
| CTGAAAAAACTTGATTGCGG+TGG | - | chr4_1:11985416-11985435 | None:intergenic | 40.0% | |
| CATGTACCTAAACCAACTGA+AGG | - | chr4_1:11985460-11985479 | None:intergenic | 40.0% | |
| ! | CTTCAGTTGGTTTAGGTACA+TGG | + | chr4_1:11985458-11985477 | Msa0535620:CDS | 40.0% |
| AATGTATACCTGAACAGCAG+TGG | - | chr4_1:11985518-11985537 | None:intergenic | 40.0% | |
| ! | GGCAAAATCACGATGTTTTG+TGG | + | chr4_1:11985696-11985715 | Msa0535620:intron | 40.0% |
| !! | CTCAAAAAGCTTTTCGAGGA+TGG | + | chr4_1:11986768-11986787 | Msa0535620:CDS | 40.0% |
| ! | AATGCTTTTGGCACATCTTC+TGG | - | chr4_1:11986961-11986980 | None:intergenic | 40.0% |
| ! | AGAAGATGTGCCAAAAGCAT+TGG | + | chr4_1:11986960-11986979 | Msa0535620:CDS | 40.0% |
| TACCTTGACCTATATCTGGT+AGG | + | chr4_1:11987012-11987031 | Msa0535620:intron | 40.0% | |
| ! | ACCATGTGACATTGGTGATT+CGG | + | chr4_1:11987102-11987121 | Msa0535620:intron | 40.0% |
| ! | TAACCATATGTGTTGGTGTC+TGG | + | chr4_1:11987249-11987268 | Msa0535620:intron | 40.0% |
| AAGGGGAACAGGTGAATTTA+AGG | + | chr4_1:11987674-11987693 | Msa0535620:CDS | 40.0% | |
| !! | TTGGAAGCACTATATGACTC+TGG | + | chr4_1:11987741-11987760 | Msa0535620:CDS | 40.0% |
| AATTCCACCTGATTAACAGC+TGG | - | chr4_1:11987843-11987862 | None:intergenic | 40.0% | |
| TTGCAAAATCTTGAGGGATC+GGG | + | chr4_1:11987994-11988013 | Msa0535620:intron | 40.0% | |
| !! | GCACTTGTTGTGAGATTGTT+TGG | + | chr4_1:11988169-11988188 | Msa0535620:intron | 40.0% |
| ! | ACTATCTTTTAGACCCTGTG+TGG | - | chr4_1:11988435-11988454 | None:intergenic | 40.0% |
| TCATAGGGATATTCTCCTCT+AGG | + | chr4_1:11988612-11988631 | Msa0535620:intron | 40.0% | |
| !!! | ATGTCACTTTTGAGTACTCC+TGG | - | chr4_1:11988642-11988661 | None:intergenic | 40.0% |
| CTGAAATTAAGCAGGCAAGT+TGG | + | chr4_1:11988847-11988866 | Msa0535620:intron | 40.0% | |
| TGATAGGAGCCTTGATATTG+TGG | + | chr4_1:11989123-11989142 | Msa0535620:intron | 40.0% | |
| CATGCAGGATAAGCTAATCA+AGG | + | chr4_1:11989365-11989384 | Msa0535620:intron | 40.0% | |
| !! | AATGGTCCTAAAAGCACCAT+AGG | - | chr4_1:11989412-11989431 | None:intergenic | 40.0% |
| TTAGGACCATTGAAGAACTC+TGG | + | chr4_1:11989421-11989440 | Msa0535620:CDS | 40.0% | |
| TAGGACCATTGAAGAACTCT+GGG | + | chr4_1:11989422-11989441 | Msa0535620:CDS | 40.0% | |
| ! | GATGGATTTGAAGGCTAGTG+TGG | - | chr4_1:11985244-11985263 | None:intergenic | 45.0% |
| ! | GGGATCTCAGATGGATTTGA+AGG | - | chr4_1:11985253-11985272 | None:intergenic | 45.0% |
| GGTGCTAAAATCCCTTCAGT+TGG | + | chr4_1:11985445-11985464 | Msa0535620:CDS | 45.0% | |
| !!! | AGACGTTGGTAACCGCTTTT+TGG | + | chr4_1:11986231-11986250 | Msa0535620:intron | 45.0% |
| AGTTCACTCCTCCAAAACCT+AGG | - | chr4_1:11986412-11986431 | None:intergenic | 45.0% | |
| ! | GGCTCTCAAAAAGCTTTTCG+AGG | + | chr4_1:11986764-11986783 | Msa0535620:CDS | 45.0% |
| !! | AAAGCTTTTCGAGGATGGTG+TGG | + | chr4_1:11986773-11986792 | Msa0535620:CDS | 45.0% |
| TGCCTACCAGATATAGGTCA+AGG | - | chr4_1:11987017-11987036 | None:intergenic | 45.0% | |
| ! | CCATGTGACATTGGTGATTC+GGG | + | chr4_1:11987103-11987122 | Msa0535620:intron | 45.0% |
| ! | CATGTGACATTGGTGATTCG+GGG | + | chr4_1:11987104-11987123 | Msa0535620:intron | 45.0% |
| ! | GGATTGAGGTATCCAATGTG+TGG | + | chr4_1:11987144-11987163 | Msa0535620:intron | 45.0% |
| GCATAGTCAATGCCACACAT+TGG | - | chr4_1:11987159-11987178 | None:intergenic | 45.0% | |
| TTGACTATGCAGCACATACG+CGG | + | chr4_1:11987169-11987188 | Msa0535620:intron | 45.0% | |
| TGACCAGACACCAACACATA+TGG | - | chr4_1:11987255-11987274 | None:intergenic | 45.0% | |
| TGTTCGACACTGACACATGT+CGG | + | chr4_1:11987276-11987295 | Msa0535620:intron | 45.0% | |
| TAAGTAGCACTAACACACGG+TGG | - | chr4_1:11987302-11987321 | None:intergenic | 45.0% | |
| !! | ATGACTTCGTTGGTGCTACA+TGG | - | chr4_1:11987362-11987381 | None:intergenic | 45.0% |
| ! | ATGACGCACTGACACAAACA+TGG | - | chr4_1:11987478-11987497 | None:intergenic | 45.0% |
| ! | ACCAAGCACATGGAAAGCAT+TGG | + | chr4_1:11987722-11987741 | Msa0535620:CDS | 45.0% |
| TCCAATGCTTTCCATGTGCT+TGG | - | chr4_1:11987726-11987745 | None:intergenic | 45.0% | |
| AGCACTATATGACTCTGGCA+AGG | + | chr4_1:11987746-11987765 | Msa0535620:CDS | 45.0% | |
| TCTGGCAAGGCTAAAGCTAT+AGG | + | chr4_1:11987759-11987778 | Msa0535620:CDS | 45.0% | |
| AATCAGGTGGAATTGCATCC+TGG | + | chr4_1:11987849-11987868 | Msa0535620:CDS | 45.0% | |
| TGAGTAATCAGCAGATGCGA+GGG | + | chr4_1:11988024-11988043 | Msa0535620:intron | 45.0% | |
| ATGCGAGGGATAGAGATCAT+AGG | + | chr4_1:11988038-11988057 | Msa0535620:intron | 45.0% | |
| ATTAAGGTGTGTGTCCACAC+AGG | + | chr4_1:11988418-11988437 | Msa0535620:intron | 45.0% | |
| TTAAGGTGTGTGTCCACACA+GGG | + | chr4_1:11988419-11988438 | Msa0535620:intron | 45.0% | |
| GAGAAATTAGGGAAGACACC+AGG | + | chr4_1:11988693-11988712 | Msa0535620:CDS | 45.0% | |
| !! | GCTACCTAAGAGCACTAATG+AGG | + | chr4_1:11988758-11988777 | Msa0535620:CDS | 45.0% |
| CTAGCCTCATTAGTGCTCTT+AGG | - | chr4_1:11988765-11988784 | None:intergenic | 45.0% | |
| !! | CTAAGAGCACTAATGAGGCT+AGG | + | chr4_1:11988763-11988782 | Msa0535620:CDS | 45.0% |
| CACTAATGAGGCTAGGATCA+GGG | + | chr4_1:11988770-11988789 | Msa0535620:CDS | 45.0% | |
| ACTTGGGAAACAGGTCTTCA+GGG | - | chr4_1:11988824-11988843 | None:intergenic | 45.0% | |
| AACTTGGGAAACAGGTCTTC+AGG | - | chr4_1:11988825-11988844 | None:intergenic | 45.0% | |
| CAGTTGCCATAGTCTGTGAT+AGG | + | chr4_1:11989107-11989126 | Msa0535620:intron | 45.0% | |
| AAGGCTCCTATCACAGACTA+TGG | - | chr4_1:11989116-11989135 | None:intergenic | 45.0% | |
| ! | ACGACACCTATGGTGCTTTT+AGG | + | chr4_1:11989403-11989422 | Msa0535620:CDS | 45.0% |
| ! | ACCATTGAAGAACTCTGGGA+TGG | + | chr4_1:11989426-11989445 | Msa0535620:CDS | 45.0% |
| ACCATCCCAGAGTTCTTCAA+TGG | - | chr4_1:11989430-11989449 | None:intergenic | 45.0% | |
| ! | ACAGCTTTGGCAACAACACC+AGG | - | chr4_1:11985493-11985512 | None:intergenic | 50.0% |
| AACAGCAGTGGTGACAGCTT+TGG | - | chr4_1:11985506-11985525 | None:intergenic | 50.0% | |
| TGGTTAAGCGCGAGGAGTTA+TGG | + | chr4_1:11986793-11986812 | Msa0535620:CDS | 50.0% | |
| CCCGAATCACCAATGTCACA+TGG | - | chr4_1:11987106-11987125 | None:intergenic | 50.0% | |
| AGCACCAACGAAGTCATGTC+CGG | + | chr4_1:11987365-11987384 | Msa0535620:intron | 50.0% | |
| GAAACCGGACATGACTTCGT+TGG | - | chr4_1:11987372-11987391 | None:intergenic | 50.0% | |
| ACGAAGTCATGTCCGGTTTC+TGG | + | chr4_1:11987372-11987391 | Msa0535620:intron | 50.0% | |
| ! | TTTTCATGCTCACTGGCCAG+TGG | - | chr4_1:11987656-11987675 | None:intergenic | 50.0% |
| ACTGGCCAGTGAGCATGAAA+AGG | + | chr4_1:11987655-11987674 | Msa0535620:CDS | 50.0% | |
| CTGGCCAGTGAGCATGAAAA+GGG | + | chr4_1:11987656-11987675 | Msa0535620:CDS | 50.0% | |
| TGGCCAGTGAGCATGAAAAG+GGG | + | chr4_1:11987657-11987676 | Msa0535620:CDS | 50.0% | |
| ! | GTTCCCCTTTTCATGCTCAC+TGG | - | chr4_1:11987663-11987682 | None:intergenic | 50.0% |
| GTGAGCATGAAAAGGGGAAC+AGG | + | chr4_1:11987663-11987682 | Msa0535620:CDS | 50.0% | |
| GTGCAGACATACCAAGCACA+TGG | + | chr4_1:11987712-11987731 | Msa0535620:CDS | 50.0% | |
| AGTGCCTCCAGCTGTTAATC+AGG | + | chr4_1:11987833-11987852 | Msa0535620:CDS | 50.0% | |
| TCCACCTGATTAACAGCTGG+AGG | - | chr4_1:11987840-11987859 | None:intergenic | 50.0% | |
| AGGTGGAATTGCATCCTGGA+TGG | + | chr4_1:11987853-11987872 | Msa0535620:CDS | 50.0% | |
| GTGAGTAATCAGCAGATGCG+AGG | + | chr4_1:11988023-11988042 | Msa0535620:intron | 50.0% | |
| TATTCTCCTCTAGGCTCACC+AGG | + | chr4_1:11988621-11988640 | Msa0535620:CDS | 50.0% | |
| AGGACAAGTTGCCCTTCGAT+GGG | + | chr4_1:11988713-11988732 | Msa0535620:CDS | 50.0% | |
| TGCTTGTAGTCCCCATCGAA+GGG | - | chr4_1:11988727-11988746 | None:intergenic | 50.0% | |
| GCACTAATGAGGCTAGGATC+AGG | + | chr4_1:11988769-11988788 | Msa0535620:CDS | 50.0% | |
| GGTACATGGCAAGCTGAACC+TGG | + | chr4_1:11985472-11985491 | Msa0535620:CDS | 55.0% | |
| AGCTGTCACCACTGCTGTTC+AGG | + | chr4_1:11985507-11985526 | Msa0535620:CDS | 55.0% | |
| GCACAACACTGGCCAGAAAC+CGG | - | chr4_1:11987387-11987406 | None:intergenic | 55.0% | |
| GTCATTGCTGGGCACAACAC+TGG | - | chr4_1:11987398-11987417 | None:intergenic | 55.0% | |
| GCCTCCAGCTGTTAATCAGG+TGG | + | chr4_1:11987836-11987855 | Msa0535620:CDS | 55.0% | |
| ATTGCATCCTGGATGGCAGC+AGG | + | chr4_1:11987860-11987879 | Msa0535620:CDS | 55.0% | |
| AACTTTGCCTGCTGCCATCC+AGG | - | chr4_1:11987870-11987889 | None:intergenic | 55.0% | |
| AGTACTCCTGGTGAGCCTAG+AGG | - | chr4_1:11988630-11988649 | None:intergenic | 55.0% | |
| CATCGAAGGGCAACTTGTCC+TGG | - | chr4_1:11988714-11988733 | None:intergenic | 55.0% | |
| CAGGACAAGTTGCCCTTCGA+TGG | + | chr4_1:11988712-11988731 | Msa0535620:CDS | 55.0% | |
| GGACAAGTTGCCCTTCGATG+GGG | + | chr4_1:11988714-11988733 | Msa0535620:CDS | 55.0% | |
| CTGCTTGTAGTCCCCATCGA+AGG | - | chr4_1:11988728-11988747 | None:intergenic | 55.0% | |
| CTTCGATGGGGACTACAAGC+AGG | + | chr4_1:11988726-11988745 | Msa0535620:CDS | 55.0% | |
| GGATGGTGTGGTTAAGCGCG+AGG | + | chr4_1:11986785-11986804 | Msa0535620:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 11985215 | 11989802 | 11985215 | ID=Msa0535620;Name=Msa0535620 |
| chr4_1 | mRNA | 11985215 | 11989802 | 11985215 | ID=Msa0535620-mRNA-1;Parent=Msa0535620;Name=Msa0535620-mRNA-1;_AED=0.30;_eAED=0.30;_QI=194|1|1|1|1|1|7|344|313 |
| chr4_1 | exon | 11985215 | 11985528 | 11985215 | ID=Msa0535620-mRNA-1:exon:3841;Parent=Msa0535620-mRNA-1 |
| chr4_1 | exon | 11986462 | 11986512 | 11986462 | ID=Msa0535620-mRNA-1:exon:3842;Parent=Msa0535620-mRNA-1 |
| chr4_1 | exon | 11986756 | 11986832 | 11986756 | ID=Msa0535620-mRNA-1:exon:3843;Parent=Msa0535620-mRNA-1 |
| chr4_1 | exon | 11986942 | 11987029 | 11986942 | ID=Msa0535620-mRNA-1:exon:3844;Parent=Msa0535620-mRNA-1 |
| chr4_1 | exon | 11987651 | 11987926 | 11987651 | ID=Msa0535620-mRNA-1:exon:3845;Parent=Msa0535620-mRNA-1 |
| chr4_1 | exon | 11988618 | 11988860 | 11988618 | ID=Msa0535620-mRNA-1:exon:3846;Parent=Msa0535620-mRNA-1 |
| chr4_1 | exon | 11989372 | 11989802 | 11989372 | ID=Msa0535620-mRNA-1:exon:3847;Parent=Msa0535620-mRNA-1 |
| chr4_1 | five_prime_UTR | 11985215 | 11985408 | 11985215 | ID=Msa0535620-mRNA-1:five_prime_utr;Parent=Msa0535620-mRNA-1 |
| chr4_1 | CDS | 11985409 | 11985528 | 11985409 | ID=Msa0535620-mRNA-1:cds;Parent=Msa0535620-mRNA-1 |
| chr4_1 | CDS | 11986462 | 11986512 | 11986462 | ID=Msa0535620-mRNA-1:cds;Parent=Msa0535620-mRNA-1 |
| chr4_1 | CDS | 11986756 | 11986832 | 11986756 | ID=Msa0535620-mRNA-1:cds;Parent=Msa0535620-mRNA-1 |
| chr4_1 | CDS | 11986942 | 11987029 | 11986942 | ID=Msa0535620-mRNA-1:cds;Parent=Msa0535620-mRNA-1 |
| chr4_1 | CDS | 11987651 | 11987926 | 11987651 | ID=Msa0535620-mRNA-1:cds;Parent=Msa0535620-mRNA-1 |
| chr4_1 | CDS | 11988618 | 11988860 | 11988618 | ID=Msa0535620-mRNA-1:cds;Parent=Msa0535620-mRNA-1 |
| chr4_1 | CDS | 11989372 | 11989458 | 11989372 | ID=Msa0535620-mRNA-1:cds;Parent=Msa0535620-mRNA-1 |
| chr4_1 | three_prime_UTR | 11989459 | 11989802 | 11989459 | ID=Msa0535620-mRNA-1:three_prime_utr;Parent=Msa0535620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
