AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0536490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0536490 MtrunA17_Chr4g0010651 46.294 769 326 16 5 719 615 1350 0.0 620
Msa0536490 MtrunA17_Chr4g0010521 46.429 756 339 11 5 719 613 1343 0.0 604
Msa0536490 MtrunA17_Chr5g0442761 39.913 461 218 10 5 434 621 1053 2.72e-85 296
Msa0536490 MtrunA17_Chr6g0482111 32.251 462 254 11 8 451 625 1045 1.89e-56 210
Msa0536490 MtrunA17_Chr3g0081531 29.487 468 256 12 8 448 615 1035 6.66e-49 187
Msa0536490 MtrunA17_Chr3g0084151 29.011 455 258 8 11 437 612 1029 3.44e-45 175
Msa0536490 MtrunA17_Chr8g0371711 27.074 458 271 14 5 445 628 1039 8.41e-37 149
Msa0536490 MtrunA17_Chr6g0482511 30.424 401 219 12 8 390 656 1014 7.10e-35 143
Msa0536490 MtrunA17_Chr4g0006771 31.232 349 199 8 8 340 614 937 1.72e-33 138
Msa0536490 MtrunA17_Chr6g0481011 26.180 466 272 12 1 446 635 1048 4.65e-33 137
Msa0536490 MtrunA17_Chr8g0353371 34.496 258 162 3 8 263 640 892 1.15e-32 136
Msa0536490 MtrunA17_Chr2g0300251 31.086 267 178 4 8 274 618 878 2.06e-32 135
Msa0536490 MtrunA17_Chr8g0354701 26.916 509 283 17 10 461 631 1107 7.03e-32 134
Msa0536490 MtrunA17_Chr8g0354721 29.973 377 206 9 5 332 625 992 1.14e-31 133
Msa0536490 MtrunA17_Chr5g0417051 32.171 258 173 1 28 285 1 256 2.40e-31 124
Msa0536490 MtrunA17_Chr1g0146421 27.740 447 270 13 8 446 608 1009 1.39e-30 129
Msa0536490 MtrunA17_Chr6g0480521 25.727 447 264 11 8 446 612 998 1.43e-30 129
Msa0536490 MtrunA17_Chr5g0415831 27.069 447 274 12 14 445 4 413 2.14e-30 124
Msa0536490 MtrunA17_Chr8g0354681 32.967 273 168 4 5 272 629 891 6.56e-30 127
Msa0536490 MtrunA17_Chr6g0480981 25.966 466 271 15 1 445 362 774 9.84e-30 126
Msa0536490 MtrunA17_Chr8g0354711 33.074 257 164 4 8 264 627 875 1.04e-29 127
Msa0536490 MtrunA17_Chr6g0484161 31.716 268 153 5 8 274 634 872 2.46e-29 125
Msa0536490 MtrunA17_Chr2g0299841 40.385 156 93 0 2 157 658 813 1.00e-28 123
Msa0536490 MtrunA17_Chr4g0025771 29.588 267 155 4 8 274 69 302 5.82e-28 119
Msa0536490 MtrunA17_Chr2g0299921 37.234 188 114 1 5 192 618 801 1.00e-27 120
Msa0536490 MtrunA17_Chr6g0480911 24.945 457 310 12 1 452 631 1059 1.36e-27 120
Msa0536490 MtrunA17_Chr8g0379351 27.381 336 201 10 4 325 157 463 1.95e-27 117
Msa0536490 MtrunA17_Chr6g0480401 30.712 267 157 3 8 274 109 347 2.91e-27 114
Msa0536490 MtrunA17_Chr2g0299851 36.702 188 115 1 5 192 619 802 2.97e-27 119
Msa0536490 MtrunA17_Chr6g0480311 32.941 255 141 6 8 262 602 826 4.21e-27 118
Msa0536490 MtrunA17_Chr6g0479671 31.461 267 176 4 8 274 613 872 5.78e-27 118
Msa0536490 MtrunA17_Chr6g0480051 30.072 276 181 6 1 274 382 647 6.59e-27 117
Msa0536490 MtrunA17_Chr6g0479761 30.882 272 158 6 8 278 472 714 1.43e-26 115
Msa0536490 MtrunA17_Chr6g0479651 30.855 269 177 5 6 274 620 879 1.47e-26 116
Msa0536490 MtrunA17_Chr6g0480321 32.283 254 142 5 8 261 469 692 1.59e-26 116
Msa0536490 MtrunA17_Chr2g0299881 35.602 191 119 2 2 192 621 807 1.64e-26 117
Msa0536490 MtrunA17_Chr6g0478451 25.166 453 289 10 6 449 615 1026 1.74e-26 116
Msa0536490 MtrunA17_Chr4g0025751 30.769 260 146 6 3 262 594 819 6.77e-26 114
Msa0536490 MtrunA17_Chr2g0299791 35.106 188 118 1 5 192 620 803 7.16e-26 114
Msa0536490 MtrunA17_Chr6g0481141 27.011 348 201 8 8 331 665 983 2.63e-25 112
Msa0536490 MtrunA17_Chr3g0084721 35.821 201 117 4 4 194 623 821 3.56e-25 112
Msa0536490 MtrunA17_Chr3g0084731 40.541 148 86 1 5 152 622 767 3.77e-25 112
Msa0536490 MtrunA17_Chr2g0299811 35.106 188 118 1 5 192 467 650 1.13e-24 110
Msa0536490 MtrunA17_Chr6g0479641 29.412 255 146 2 8 262 616 836 1.40e-24 110
Msa0536490 MtrunA17_Chr8g0368251 30.370 270 158 5 5 274 607 846 1.41e-24 110
Msa0536490 MtrunA17_Chr6g0451551 27.765 443 259 14 14 446 780 1171 2.11e-24 109
Msa0536490 MtrunA17_Chr6g0479631 29.478 268 159 6 8 274 614 852 5.68e-24 108
Msa0536490 MtrunA17_Chr6g0481231 29.070 258 154 4 5 262 5 233 5.75e-24 105
Msa0536490 MtrunA17_Chr3g0084851 36.709 158 98 1 2 159 621 776 6.98e-24 108
Msa0536490 MtrunA17_Chr4g0025831 24.558 452 268 16 8 446 611 1002 1.13e-23 107
Msa0536490 MtrunA17_Chr3g0084841 38.816 152 91 1 4 155 624 773 2.32e-23 106
Msa0536490 MtrunA17_Chr6g0479841 29.213 267 160 4 8 274 267 504 3.23e-23 105
Msa0536490 MtrunA17_Chr6g0480421 30.078 256 141 3 8 263 473 690 3.52e-23 105
Msa0536490 MtrunA17_Chr4g0025741 29.084 251 145 3 8 258 609 826 7.84e-23 104
Msa0536490 MtrunA17_Chr6g0481251 23.871 465 266 11 8 446 472 874 1.94e-22 103
Msa0536490 MtrunA17_Chr4g0025811 28.627 255 149 4 8 262 607 828 4.35e-22 102
Msa0536490 MtrunA17_Chr6g0478771 28.889 270 161 6 8 274 599 840 2.87e-21 99.8
Msa0536490 MtrunA17_Chr6g0480451 24.222 450 275 12 5 446 671 1062 4.84e-21 99.0
Msa0536490 MtrunA17_Chr2g0281531 29.741 232 142 2 6 237 172 382 5.53e-21 95.9
Msa0536490 MtrunA17_Chr6g0479051 27.304 293 180 6 8 274 578 863 3.16e-20 96.3
Msa0536490 MtrunA17_Chr6g0479001 28.159 277 168 6 1 274 591 839 3.80e-20 96.3
Msa0536490 MtrunA17_Chr6g0478741 27.941 272 144 5 8 277 600 821 4.74e-20 95.5
Msa0536490 MtrunA17_Chr6g0478841 27.734 256 154 5 8 262 599 824 5.93e-20 95.5
Msa0536490 MtrunA17_Chr6g0480041 28.175 252 151 5 8 258 630 852 1.64e-19 94.0
Msa0536490 MtrunA17_Chr6g0479621 29.482 251 146 4 8 258 610 829 5.30e-19 92.4
Msa0536490 MtrunA17_Chr8g0350801 28.070 285 184 3 8 272 645 928 4.62e-18 89.4
Msa0536490 MtrunA17_Chr8g0342641 28.938 273 178 6 1 269 604 864 6.50e-18 89.0
Msa0536490 MtrunA17_Chr7g0248121 23.476 328 189 2 1 266 619 946 6.63e-18 89.0
Msa0536490 MtrunA17_Chr2g0330121 31.086 267 172 5 1 266 443 698 1.75e-17 87.4
Msa0536490 MtrunA17_Chr6g0480461 30.275 218 122 5 8 225 659 846 2.02e-17 87.4
Msa0536490 MtrunA17_Chr3g0118981 27.757 263 156 5 1 261 641 871 2.18e-17 87.4
Msa0536490 MtrunA17_Chr5g0439951 28.309 272 173 6 1 266 615 870 4.54e-17 86.3
Msa0536490 MtrunA17_Chr4g0018431 26.937 271 163 6 1 268 640 878 5.62e-17 85.9
Msa0536490 MtrunA17_Chr6g0482141 29.231 260 146 9 8 264 659 883 6.03e-17 85.9
Msa0536490 MtrunA17_Chr6g0482141 24.217 351 190 10 14 323 781 1096 3.63e-13 73.6
Msa0536490 MtrunA17_Chr6g0472561 24.859 354 213 12 108 446 7 322 1.46e-16 82.4
Msa0536490 MtrunA17_Chr8g0342791 28.958 259 168 6 11 266 610 855 2.17e-16 84.3
Msa0536490 MtrunA17_Chr8g0348541 26.284 331 179 5 1 267 624 953 2.44e-16 84.0
Msa0536490 MtrunA17_Chr7g0248521 23.926 326 187 5 1 266 618 942 3.22e-16 83.6
Msa0536490 MtrunA17_Chr6g0480861 34.375 160 99 1 113 272 12 165 3.59e-16 77.4
Msa0536490 MtrunA17_Chr2g0298531 26.296 270 165 5 1 268 629 866 3.89e-16 83.2
Msa0536490 MtrunA17_Chr6g0480181 33.775 151 90 2 8 158 600 740 4.12e-16 82.8
Msa0536490 MtrunA17_Chr1g0153511 28.679 265 145 9 8 266 580 806 4.38e-16 83.2
Msa0536490 MtrunA17_Chr1g0153511 31.081 222 145 6 8 227 1191 1406 3.82e-13 73.6
Msa0536490 MtrunA17_Chr1g0153511 26.692 266 151 13 7 266 955 1182 1.65e-11 68.2
Msa0536490 MtrunA17_Chr1g0153511 27.857 280 169 14 11 266 1006 1276 4.95e-11 66.6
Msa0536490 MtrunA17_Chr2g0298291 26.667 270 164 5 1 268 624 861 4.68e-16 82.8
Msa0536490 MtrunA17_Chr6g0481191 30.457 197 108 4 8 204 233 400 1.16e-15 80.1
Msa0536490 MtrunA17_Chr8g0342731 26.846 298 190 7 1 290 42 319 2.86e-15 80.5
Msa0536490 MtrunA17_Chr6g0482491 28.912 294 154 11 8 266 634 907 4.47e-15 79.7
Msa0536490 MtrunA17_Chr6g0482491 24.615 325 204 10 16 323 877 1177 4.44e-13 73.2
Msa0536490 MtrunA17_Chr6g0480271 36.066 122 77 1 8 129 614 734 4.71e-15 79.3
Msa0536490 MtrunA17_Chr7g0256881 24.695 328 183 7 1 264 610 937 5.50e-15 79.7
Msa0536490 MtrunA17_Chr6g0482351 25.595 336 192 11 8 324 1083 1379 7.62e-15 79.3
Msa0536490 MtrunA17_Chr6g0482351 29.057 265 164 12 8 266 646 892 3.96e-12 70.5
Msa0536490 MtrunA17_Chr7g0242801 27.481 262 169 5 1 254 693 941 1.20e-14 78.6
Msa0536490 MtrunA17_Chr6g0479821 31.944 144 89 2 8 151 621 755 1.71e-14 77.8
Msa0536490 MtrunA17_Chr4g0020591 29.963 267 175 5 1 266 622 877 3.63e-14 77.0
Msa0536490 MtrunA17_Chr8g0342691 26.174 298 192 7 1 290 614 891 5.66e-14 76.3
Msa0536490 MtrunA17_Chr7g0248511 25.305 328 184 7 1 267 625 952 1.16e-13 75.1
Msa0536490 MtrunA17_Chr6g0480361 33.846 130 77 2 22 151 123 243 1.81e-13 73.6
Msa0536490 MtrunA17_Chr1g0172541 25.776 322 187 11 16 323 751 1034 1.87e-13 74.7
Msa0536490 MtrunA17_Chr1g0172541 28.514 249 152 7 8 249 603 832 2.65e-11 67.4
Msa0536490 MtrunA17_Chr3g0119601 26.144 306 178 7 6 264 620 924 4.26e-13 73.6
Msa0536490 MtrunA17_Chr7g0248201 27.500 160 116 0 6 165 13 172 7.22e-13 68.9
Msa0536490 MtrunA17_Chr6g0479591 27.468 233 156 7 47 274 600 824 7.26e-13 72.4
Msa0536490 MtrunA17_Chr6g0482441 28.315 279 175 11 8 266 603 876 1.28e-12 72.0
Msa0536490 MtrunA17_Chr3g0102121 25.373 268 166 5 1 266 633 868 3.30e-12 70.5
Msa0536490 MtrunA17_Chr3g0077971 26.718 262 162 8 16 272 1175 1411 4.71e-12 70.1
Msa0536490 MtrunA17_Chr6g0480151 30.709 127 87 1 8 134 608 733 5.84e-12 69.3
Msa0536490 MtrunA17_Chr8g0363851 27.419 248 164 4 4 248 458 692 6.95e-12 69.3
Msa0536490 MtrunA17_Chr5g0394041 26.217 267 182 6 1 260 227 485 1.95e-11 67.8
Msa0536490 MtrunA17_Chr8g0342671 26.394 269 183 6 1 265 618 875 2.36e-11 67.8
Msa0536490 MtrunA17_Chr6g0479701 31.496 127 86 1 8 134 621 746 2.62e-11 67.4
Msa0536490 MtrunA17_Chr4g0005401 27.586 174 99 2 1 154 645 811 4.14e-11 67.0
Msa0536490 MtrunA17_Chr6g0482461 23.476 328 211 11 7 324 280 577 5.29e-11 66.2
Msa0536490 MtrunA17_Chr7g0243031 26.562 256 174 5 1 251 130 376 7.42e-11 65.9
Msa0536490 MtrunA17_Chr8g0363891 27.731 238 157 3 14 248 3 228 7.55e-11 65.9
Msa0536490 MtrunA17_Chr8g0363891 27.799 259 139 8 21 266 245 468 8.29e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0536490 AT5G18350.1 31.629 313 151 10 10 278 717 1010 2.78e-19 94.0
Msa0536490 AT5G17680.1 28.472 288 178 7 1 280 617 884 7.70e-19 92.4
Msa0536490 AT5G17680.2 28.472 288 178 7 1 280 618 885 8.04e-19 92.4
Msa0536490 AT4G12010.1 24.837 306 177 7 11 271 645 942 4.02e-17 87.0
Msa0536490 AT5G17880.1 26.592 267 175 5 11 275 662 909 1.27e-15 82.0
Msa0536490 AT5G17880.2 26.592 267 175 5 11 275 662 909 1.67e-15 81.6
Msa0536490 AT5G49140.1 26.667 270 135 4 1 270 623 829 1.86e-15 81.3
Msa0536490 AT1G27180.3 28.873 284 177 10 9 271 681 960 1.98e-15 81.3
Msa0536490 AT1G27180.1 28.873 284 177 10 9 271 843 1122 2.42e-15 81.3
Msa0536490 AT1G27180.5 28.873 284 177 10 9 271 679 958 2.87e-15 80.9
Msa0536490 AT1G27180.8 28.873 284 177 10 9 271 679 958 2.87e-15 80.9
Msa0536490 AT1G27180.2 28.873 284 177 10 9 271 681 960 2.90e-15 80.9
Msa0536490 AT1G27180.7 28.873 284 177 10 9 271 505 784 3.96e-15 80.5
Msa0536490 AT1G27180.6 28.873 284 177 10 9 271 505 784 3.96e-15 80.5
Msa0536490 AT1G27180.4 28.873 284 177 10 9 271 505 784 3.96e-15 80.5
Msa0536490 AT1G63750.3 23.885 314 172 8 1 310 622 872 5.60e-15 80.1
Msa0536490 AT1G63750.1 23.885 314 172 8 1 310 455 705 5.67e-15 79.7
Msa0536490 AT1G63750.2 23.885 314 172 8 1 310 455 705 5.67e-15 79.7
Msa0536490 AT1G69550.1 28.035 346 216 10 10 329 957 1295 5.89e-15 80.1
Msa0536490 AT1G69550.1 26.780 295 189 7 1 271 685 976 1.42e-11 68.9
Msa0536490 AT5G45230.1 26.296 270 184 6 1 269 650 905 1.23e-14 79.0
Msa0536490 AT2G16870.1 26.515 264 131 4 1 264 615 815 1.79e-14 78.2
Msa0536490 AT1G56510.1 26.316 266 135 4 1 266 616 820 1.90e-14 78.2
Msa0536490 AT2G16870.3 26.515 264 131 4 1 264 341 541 2.58e-14 77.4
Msa0536490 AT2G16870.2 26.515 264 131 4 1 264 341 541 2.58e-14 77.4
Msa0536490 AT4G16890.3 28.195 266 173 7 1 254 765 1024 1.04e-13 75.9
Msa0536490 AT4G16900.1 30.247 162 107 2 1 162 701 856 1.45e-13 75.1
Msa0536490 AT2G17060.1 24.912 285 184 6 11 276 683 956 1.46e-13 75.5
Msa0536490 AT2G17060.2 24.912 285 184 6 11 276 683 956 1.64e-13 75.1
Msa0536490 AT4G19530.2 27.652 264 168 6 11 271 667 910 1.75e-13 75.1
Msa0536490 AT4G19530.1 27.652 264 168 6 11 271 667 910 1.80e-13 75.1
Msa0536490 AT4G16900.2 30.247 162 107 2 1 162 701 856 1.86e-13 74.7
Msa0536490 AT4G16890.1 28.625 269 154 7 1 247 774 1026 2.26e-13 74.7
Msa0536490 AT4G36150.1 27.240 279 175 7 9 271 652 918 2.30e-13 74.7
Msa0536490 AT4G16890.5 28.625 269 154 7 1 247 765 1017 2.72e-13 74.7
Msa0536490 AT5G45200.2 25.177 282 172 6 10 266 419 686 2.81e-13 74.3
Msa0536490 AT5G45200.1 25.177 282 172 6 10 266 663 930 2.86e-13 74.3
Msa0536490 AT4G16860.2 30.435 161 106 2 1 161 757 911 3.55e-13 73.9
Msa0536490 AT4G16860.1 30.435 161 106 2 1 161 919 1073 3.70e-13 73.9
Msa0536490 AT1G56540.1 26.316 228 143 5 54 264 600 819 3.77e-13 73.9
Msa0536490 AT5G45200.3 25.177 282 172 6 10 266 663 930 3.82e-13 73.9
Msa0536490 AT1G56540.2 26.316 228 143 5 54 264 436 655 5.00e-13 73.6
Msa0536490 AT4G08450.2 31.098 164 107 2 1 164 760 917 7.10e-13 73.2
Msa0536490 AT4G08450.1 31.098 164 107 2 1 164 760 917 7.26e-13 73.2
Msa0536490 AT5G45250.1 24.906 265 162 7 11 266 662 898 1.80e-12 71.6
Msa0536490 AT4G16950.2 28.400 250 154 6 1 246 908 1136 3.02e-12 71.2
Msa0536490 AT4G16920.9 28.400 250 154 6 1 246 902 1130 3.15e-12 71.2
Msa0536490 AT4G16920.1 28.400 250 154 6 1 246 902 1130 3.17e-12 70.9
Msa0536490 AT4G16890.2 30.263 152 103 1 1 152 774 922 3.29e-12 70.9
Msa0536490 AT5G38350.1 26.512 215 146 4 6 218 475 679 3.42e-12 70.9
Msa0536490 AT4G16890.4 30.263 152 103 1 1 152 619 767 4.39e-12 70.5
Msa0536490 AT4G16950.1 28.400 250 154 6 1 246 908 1136 4.58e-12 70.5
Msa0536490 AT4G16950.3 28.400 250 154 6 1 246 908 1136 4.86e-12 70.5
Msa0536490 AT4G16920.3 28.400 250 154 6 1 246 902 1130 5.26e-12 70.5
Msa0536490 AT4G16920.5 28.400 250 154 6 1 246 902 1130 5.26e-12 70.5
Msa0536490 AT4G16920.4 28.400 250 154 6 1 246 902 1130 5.63e-12 70.1
Msa0536490 AT4G16920.7 28.400 250 154 6 1 246 902 1130 5.63e-12 70.1
Msa0536490 AT4G16920.6 28.400 250 154 6 1 246 902 1130 6.56e-12 70.1
Msa0536490 AT4G16920.2 28.400 250 154 6 1 246 902 1130 7.16e-12 70.1
Msa0536490 AT4G16920.8 28.400 250 154 6 1 246 902 1130 7.16e-12 70.1
Msa0536490 AT4G16950.4 28.400 250 154 6 1 246 908 1136 7.41e-12 69.7
Msa0536490 AT5G11250.2 26.300 327 154 10 10 264 724 1035 7.55e-12 69.7
Msa0536490 AT5G11250.3 26.300 327 154 10 10 264 642 953 7.83e-12 69.7
Msa0536490 AT5G11250.1 26.300 327 154 10 10 264 642 953 7.83e-12 69.7
Msa0536490 AT1G27170.1 33.077 130 86 1 9 137 670 799 8.66e-12 69.7
Msa0536490 AT1G27170.2 25.939 293 169 8 9 260 670 955 9.27e-12 69.7
Msa0536490 AT4G12020.7 31.579 152 101 1 8 159 1249 1397 9.64e-12 69.7
Msa0536490 AT4G12020.1 31.579 152 101 1 8 159 1257 1405 9.89e-12 69.7
Msa0536490 AT4G12020.9 31.579 152 101 1 8 159 1257 1405 9.89e-12 69.7
Msa0536490 AT4G12020.5 31.579 152 101 1 8 159 1182 1330 9.92e-12 69.7
Msa0536490 AT4G12020.6 31.579 152 101 1 8 159 1249 1397 1.02e-11 69.3
Msa0536490 AT4G12020.8 31.579 152 101 1 8 159 1249 1397 1.02e-11 69.3
Msa0536490 AT5G18360.1 31.126 151 97 2 1 151 622 765 1.03e-11 69.3
Msa0536490 AT5G40910.1 32.432 148 94 3 1 145 601 745 1.06e-11 69.3
Msa0536490 AT5G40910.9 32.432 148 94 3 1 145 601 745 1.06e-11 69.3
Msa0536490 AT4G12020.4 31.579 152 101 1 8 159 1249 1397 1.14e-11 69.3
Msa0536490 AT4G12020.2 31.579 152 101 1 8 159 1257 1405 1.19e-11 69.3
Msa0536490 AT4G12020.10 31.579 152 101 1 8 159 1249 1397 1.20e-11 69.3
Msa0536490 AT4G12020.3 31.579 152 101 1 8 159 1257 1405 1.29e-11 69.3
Msa0536490 AT5G40910.2 32.432 148 94 3 1 145 417 561 1.52e-11 68.6
Msa0536490 AT5G40910.3 32.432 148 94 3 1 145 417 561 1.52e-11 68.6
Msa0536490 AT5G40910.5 32.432 148 94 3 1 145 417 561 1.52e-11 68.6
Msa0536490 AT5G40910.7 32.432 148 94 3 1 145 417 561 1.52e-11 68.6
Msa0536490 AT5G40910.8 32.432 148 94 3 1 145 417 561 1.52e-11 68.6
Msa0536490 AT4G16940.1 26.087 207 104 6 1 164 713 913 1.55e-11 68.9
Msa0536490 AT4G16940.4 26.087 207 104 6 1 164 713 913 1.56e-11 68.9
Msa0536490 AT5G40910.6 32.593 135 87 2 1 134 417 548 1.86e-11 68.6
Msa0536490 AT5G40910.4 32.593 135 87 2 1 134 417 548 1.86e-11 68.6
Msa0536490 AT4G16940.6 26.087 207 104 6 1 164 713 913 2.25e-11 68.2
Msa0536490 AT4G16940.2 26.087 207 104 6 1 164 713 913 2.26e-11 68.2
Msa0536490 AT4G16940.3 26.087 207 104 6 1 164 713 913 2.26e-11 68.2
Msa0536490 AT4G16940.5 26.087 207 104 6 1 164 713 913 2.26e-11 68.2
Msa0536490 AT5G51630.5 29.452 146 100 1 1 146 712 854 4.22e-11 67.4
Msa0536490 AT5G44510.4 26.756 299 150 10 8 287 656 904 6.39e-11 66.6
Msa0536490 AT5G44510.3 26.756 299 150 10 8 287 656 904 6.43e-11 66.6
Msa0536490 AT5G41750.1 32.867 143 89 3 1 140 618 756 6.53e-11 66.6
Msa0536490 AT5G41750.2 32.867 143 89 3 1 140 618 756 6.53e-11 66.6
Msa0536490 AT5G51630.1 28.571 161 109 2 1 161 776 930 6.88e-11 66.6
Msa0536490 AT5G44510.2 26.846 298 149 10 9 287 657 904 7.08e-11 66.6
Msa0536490 AT5G51630.4 28.571 161 109 2 1 161 712 866 7.31e-11 66.6
Msa0536490 AT5G51630.6 28.571 161 109 2 1 161 712 866 7.31e-11 66.6
Msa0536490 AT5G44510.1 26.756 299 150 10 8 287 656 904 7.35e-11 66.6
Msa0536490 AT5G51630.2 28.571 161 109 2 1 161 712 866 8.05e-11 66.6
Msa0536490 AT5G51630.3 28.571 161 109 2 1 161 728 882 8.41e-11 66.2
Msa0536490 AT5G44870.1 24.231 260 172 6 11 266 703 941 9.22e-11 66.2

Find 148 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGAACTTAGTTGGAAATTT+TGG 0.064923 4_1:+13717924 Msa0536490:CDS
ACATTCAAGTCTTCCAATTT+TGG 0.117449 4_1:-13716504 None:intergenic
CTTGGAATGCTTTCCAAAAT+TGG 0.131508 4_1:+13716491 Msa0536490:CDS
TCTACTTTCTGAATGCTTAA+TGG 0.176807 4_1:-13716633 None:intergenic
GTGAGGTTACCAATAGAATT+TGG 0.218774 4_1:-13716240 None:intergenic
AGAAGAAGGCTTCTCGAATT+TGG 0.250153 4_1:+13716416 Msa0536490:CDS
ATCCTTGAGGCATGCCATTC+TGG 0.260471 4_1:+13717818 Msa0536490:CDS
CTTGCTAAGGCCAATATTAA+AGG 0.263509 4_1:+13717557 Msa0536490:CDS
ACTTGACAGATGCCGTAATT+TGG 0.276491 4_1:+13715999 Msa0536490:CDS
ATTCGTAATGTGGCAAGTTT+TGG 0.299221 4_1:-13716333 None:intergenic
CTTGCCACATTACGAATTGA+TGG 0.300030 4_1:+13716339 Msa0536490:CDS
TGGAGATTCCCCTTTAATAT+TGG 0.305041 4_1:-13717567 None:intergenic
ACATTATCATACAAATAAAA+TGG 0.305686 4_1:-13716729 None:intergenic
TGAATGCTTAATGGAAGTTC+TGG 0.309156 4_1:-13716624 None:intergenic
TAGACATGTCAGTTTGTAAA+AGG 0.318029 4_1:+13716277 Msa0536490:CDS
AAGCTTTGAGTCATCGCTAT+TGG 0.321059 4_1:+13717843 Msa0536490:CDS
TCTGAGAAGACTAGAAAATT+CGG 0.323752 4_1:+13718228 Msa0536490:CDS
AAGAAGTTTCCAAATTCTAT+TGG 0.324255 4_1:+13716231 Msa0536490:CDS
AGCTTTGAGTCATCGCTATT+GGG 0.329363 4_1:+13717844 Msa0536490:CDS
TGTTTCCGACAAATATTTGA+TGG 0.330981 4_1:+13718195 Msa0536490:CDS
AAATAAGTCAAGCAGGAAAA+AGG 0.335860 4_1:+13718420 Msa0536490:CDS
AAGGGTCTTAATGCATGTTT+TGG 0.346349 4_1:+13717222 Msa0536490:CDS
TCGAAAGAGTGTTGAGGGAG+AGG 0.352111 4_1:+13717738 Msa0536490:CDS
TTATCTACTATTGAGGAATT+CGG 0.352712 4_1:+13718007 Msa0536490:CDS
GCACTTAAGTAAACAATGTT+TGG 0.360133 4_1:-13716051 None:intergenic
AGAGGACGTTGATACTGATT+TGG 0.361036 4_1:+13718081 Msa0536490:CDS
TCCTCTAAGTCCCATGTTGT+TGG 0.366055 4_1:+13717081 Msa0536490:CDS
ACAGTTGATTATAAATCGTT+GGG 0.378005 4_1:+13717281 Msa0536490:CDS
GACTTAGAGGACACCATTCC+AGG 0.382380 4_1:-13717069 None:intergenic
AATAACACTGCGTTGAACTT+TGG 0.383676 4_1:-13717893 None:intergenic
CCCGATTCTAGCATCTGGTT+TGG 0.384694 4_1:+13717386 Msa0536490:CDS
ACCAACAACATGGGACTTAG+AGG 0.387825 4_1:-13717082 None:intergenic
TATGAATCAGCAATAAGTTT+AGG 0.388328 4_1:-13717683 None:intergenic
TGAAGACAAGCGAACTTAGT+TGG 0.391290 4_1:+13717915 Msa0536490:CDS
GGTTTGCATTTGTTTATTGA+TGG 0.402731 4_1:+13717102 Msa0536490:CDS
AATTCCTCAATAGTAGATAA+TGG 0.405307 4_1:-13718004 None:intergenic
ATGATGTTTAATAAATCATA+TGG 0.405446 4_1:+13718136 Msa0536490:CDS
CTGAGAAGACTAGAAAATTC+GGG 0.412260 4_1:+13718229 Msa0536490:CDS
TCGAATGCTAATGCAACAAC+AGG 0.412967 4_1:-13716985 None:intergenic
TCCACCCTCAACGTTCCATT+AGG 0.417946 4_1:-13718280 None:intergenic
CATTATTCTATTGAAATGTC+AGG 0.420255 4_1:+13717979 Msa0536490:CDS
CACAGTTGATTATAAATCGT+TGG 0.426320 4_1:+13717280 Msa0536490:CDS
TTGCTAAGGCCAATATTAAA+GGG 0.426548 4_1:+13717558 Msa0536490:CDS
AGATGAAGAGGAAGAGGAAG+AGG 0.426997 4_1:+13718057 Msa0536490:CDS
TTTATAGCTCCAGAGATATC+AGG 0.429506 4_1:-13715961 None:intergenic
TGAGGAAGATGAAGAGGAAG+AGG 0.430582 4_1:+13718051 Msa0536490:CDS
AGAGGAAGAGGAAGAGGAAG+AGG 0.438291 4_1:+13718063 Msa0536490:CDS
TGAAGATCTCCACATTATCT+TGG 0.438889 4_1:+13716473 Msa0536490:CDS
GCTCCATAGGCAGCAGAGGC+TGG 0.440843 4_1:-13717587 None:intergenic
CAAAGTCTTTGTTGAGGTCG+TGG 0.443284 4_1:+13717531 Msa0536490:intron
TTGTTCTTTGCAGATATTTG+AGG 0.443800 4_1:+13715891 Msa0536490:CDS
CGTCAAACCTTACCAAATTA+CGG 0.443879 4_1:-13716011 None:intergenic
AGACATGGAAGATACATTCT+TGG 0.446621 4_1:-13716105 None:intergenic
TCTCCAGCCTCTGCTGCCTA+TGG 0.448141 4_1:+13717584 Msa0536490:CDS
AGTTTCCATCAAATATTTGT+CGG 0.449121 4_1:-13718200 None:intergenic
ACTACGGTTACTGCAGTGTC+GGG 0.449544 4_1:+13717145 Msa0536490:CDS
AATTTCAACAGGATACCTAA+TGG 0.451301 4_1:+13718265 Msa0536490:CDS
TTGCTTTAAACTTGCTCCAT+AGG 0.451707 4_1:-13717600 None:intergenic
ACCAAACCAGATGCTAGAAT+CGG 0.459086 4_1:-13717387 None:intergenic
CCTATCATCAAAACTATCAA+TGG 0.467500 4_1:-13716198 None:intergenic
CGAAAGAGTGTTGAGGGAGA+GGG 0.468127 4_1:+13717739 Msa0536490:CDS
GGATTGCCACGTTGTCTCCA+TGG 0.470694 4_1:-13717365 None:intergenic
GCAATCCCGATTCTAGCATC+TGG 0.471833 4_1:+13717381 Msa0536490:CDS
GGATAGGATCTAATTTCAAC+AGG 0.472252 4_1:+13718254 Msa0536490:CDS
ATTGATGGATTCTCTCAAGT+TGG 0.472398 4_1:+13716354 Msa0536490:CDS
AGGATCCTTTGATGCATTGT+GGG 0.481672 4_1:-13716551 None:intergenic
GCATTTGTTTATTGATGGAA+AGG 0.488692 4_1:+13717107 Msa0536490:CDS
TGTGGTACGTGTTGTTGAGT+TGG 0.491158 4_1:+13717646 Msa0536490:CDS
AGCATCTGGTTTGGTTCCAA+AGG 0.496707 4_1:+13717395 Msa0536490:CDS
GATTGCCACGTTGTCTCCAT+GGG 0.496790 4_1:-13717364 None:intergenic
AATATTCGAAAGAGTGTTGA+GGG 0.498732 4_1:+13717733 Msa0536490:CDS
ACTCAAATACCTGATATCTC+TGG 0.499054 4_1:+13715952 Msa0536490:CDS
GGTTCCATTATCTACTATTG+AGG 0.499395 4_1:+13718000 Msa0536490:CDS
AATTCTATTGGTAACCTCAC+AGG 0.503132 4_1:+13716243 Msa0536490:CDS
CTAGAAAATTCGGGAAGGAT+AGG 0.504090 4_1:+13718238 Msa0536490:CDS
ACAGATGCCGTAATTTGGTA+AGG 0.504129 4_1:+13716004 Msa0536490:CDS
GTAAGGTTTGACGAGTCCAT+TGG 0.510446 4_1:+13716021 Msa0536490:CDS
TTGCGAAAGCTTAACTTCAA+AGG 0.512105 4_1:+13716665 Msa0536490:CDS
TTGGTGACACTGCATTTAAG+TGG 0.512202 4_1:+13716435 Msa0536490:CDS
ATCAAGCGTGCTATGGTCAA+TGG 0.513918 4_1:+13716689 Msa0536490:CDS
AGCCTTCTTCTACTACTGAA+TGG 0.518263 4_1:-13716404 None:intergenic
GTTCAATGATGAAGAGTGGA+AGG 0.525262 4_1:+13717203 Msa0536490:CDS
GTTGCATTAGCATTCGAGTT+GGG 0.526852 4_1:+13716991 Msa0536490:CDS
AAGAACACGAAGATTGTGGT+TGG 0.530388 4_1:+13717621 Msa0536490:CDS
ACATGTTAGTGTGTGACCTC+AGG 0.534800 4_1:+13717175 Msa0536490:CDS
CATCATAACATCTTTCTCTA+CGG 0.538759 4_1:-13718119 None:intergenic
GACTACGGTTACTGCAGTGT+CGG 0.538913 4_1:+13717144 Msa0536490:CDS
TAACTATGAGGAAGATGAAG+AGG 0.541984 4_1:+13718045 Msa0536490:CDS
TTATTGAGAGCCCAGAAAAG+AGG 0.544139 4_1:-13716958 None:intergenic
AAGGATCCTTTGATGCATTG+TGG 0.547632 4_1:-13716552 None:intergenic
GAAAGCATTCCAAGATAATG+TGG 0.549100 4_1:-13716482 None:intergenic
GATACCTAATGGAACGTTGA+GGG 0.552530 4_1:+13718276 Msa0536490:CDS
GATGAGACCACAGTGAATCA+TGG 0.554359 4_1:+13718328 Msa0536490:CDS
TCTATCCCACAATGCATCAA+AGG 0.554685 4_1:+13716546 Msa0536490:CDS
GACTCAAAGCTTCACCAGAA+TGG 0.555021 4_1:-13717832 None:intergenic
AAGCAAGAACACGAAGATTG+TGG 0.555349 4_1:+13717617 Msa0536490:CDS
AGAACACGAAGATTGTGGTT+GGG 0.555576 4_1:+13717622 Msa0536490:CDS
ATCCATTCAGTAGTAGAAGA+AGG 0.560020 4_1:+13716402 Msa0536490:CDS
AATGTTTGGCATAAATCCAA+TGG 0.560178 4_1:-13716037 None:intergenic
CACCAGAATGGCATGCCTCA+AGG 0.560945 4_1:-13717820 None:intergenic
CAAAGGCATCAAGCGTGCTA+TGG 0.561906 4_1:+13716682 Msa0536490:CDS
CCAAACCAGATGCTAGAATC+GGG 0.565428 4_1:-13717386 None:intergenic
TGATTCACATTGAACTTGAA+CGG 0.566867 4_1:-13717259 None:intergenic
ACAAATGCAAACCAACAACA+TGG 0.572408 4_1:-13717092 None:intergenic
ATCTCATTTGATACTCCCCA+TGG 0.573857 4_1:+13717348 Msa0536490:CDS
ACAAGATCTTATCCGCGGGT+TGG 0.577405 4_1:+13717778 Msa0536490:CDS
TGTTGCATTAGCATTCGAGT+TGG 0.579469 4_1:+13716990 Msa0536490:CDS
ATTCTATTGGTAACCTCACA+GGG 0.580559 4_1:+13716244 Msa0536490:CDS
ATGCTCCAAATAAGTCAAGC+AGG 0.581772 4_1:+13718413 Msa0536490:CDS
GAAATATATCACAAAGACTA+CGG 0.582973 4_1:+13717129 Msa0536490:CDS
TCATCTGCTTATTATCCTTG+AGG 0.583501 4_1:+13717805 Msa0536490:CDS
ATCAAGAATTCTTAAGACAA+AGG 0.588305 4_1:-13716571 None:intergenic
AATGAGAGAAACTCGAGACA+TGG 0.590192 4_1:-13716120 None:intergenic
AACCTCTGAGTCTAACTATG+AGG 0.591387 4_1:+13718033 Msa0536490:CDS
ACGTGTTGTTGAGTTGGTGA+AGG 0.591929 4_1:+13717652 Msa0536490:CDS
GAATCCATCAATTCGTAATG+TGG 0.592675 4_1:-13716343 None:intergenic
AGAGAAGGAAAGAATACAAG+TGG 0.592916 4_1:+13716883 Msa0536490:intron
ATTGCTGATTCATACACAGA+TGG 0.602754 4_1:+13717692 Msa0536490:CDS
ACTTGCTCCATAGGCAGCAG+AGG 0.606640 4_1:-13717591 None:intergenic
AGAGGAATATCTTTACTACC+AGG 0.607865 4_1:-13716940 None:intergenic
CGAAGATTGTGGTTGGGATG+TGG 0.609876 4_1:+13717628 Msa0536490:CDS
TTCCTCATAGTTAGACTCAG+AGG 0.610264 4_1:-13718035 None:intergenic
GGAAGATTGATGATAGAACA+TGG 0.612711 4_1:+13717866 Msa0536490:CDS
GCTTTGAGTCATCGCTATTG+GGG 0.613081 4_1:+13717845 Msa0536490:CDS
TTCAATGATGAAGAGTGGAA+GGG 0.616367 4_1:+13717204 Msa0536490:CDS
TATTGATGATACTCAACAGA+AGG 0.616490 4_1:+13718306 Msa0536490:CDS
GAGTTATTGTAGAAATCTCA+AGG 0.617184 4_1:+13716596 Msa0536490:CDS
ACCTAATGGAACGTTGAGGG+TGG 0.619222 4_1:+13718279 Msa0536490:CDS
AAATATTCGAAAGAGTGTTG+AGG 0.620461 4_1:+13717732 Msa0536490:CDS
GAGGTCGTGGATGCTTGCTA+AGG 0.624977 4_1:+13717544 Msa0536490:CDS
TTATCATACAAATAAAATGG+TGG 0.627783 4_1:-13716726 None:intergenic
TGCTAAGGCCAATATTAAAG+GGG 0.639326 4_1:+13717559 Msa0536490:CDS
CAAATGCAAACCAACAACAT+GGG 0.643293 4_1:-13717091 None:intergenic
AAGAAACAAGATCTTATCCG+CGG 0.649292 4_1:+13717773 Msa0536490:CDS
CAGTTGATTATAAATCGTTG+GGG 0.653109 4_1:+13717282 Msa0536490:CDS
AGAAACAAGATCTTATCCGC+GGG 0.659660 4_1:+13717774 Msa0536490:CDS
GGATACCTAATGGAACGTTG+AGG 0.663801 4_1:+13718275 Msa0536490:CDS
CATCATTGAACAAAATCCTG+AGG 0.667870 4_1:-13717191 None:intergenic
GAAGACTAGAAAATTCGGGA+AGG 0.670943 4_1:+13718233 Msa0536490:CDS
AGAGAATGATAAGATAAACT+CGG 0.672382 4_1:+13717023 Msa0536490:CDS
CGAATGCTAATGCAACAACA+GGG 0.682656 4_1:-13716984 None:intergenic
GCAGATGAATATCCAACCCG+CGG 0.687171 4_1:-13717790 None:intergenic
CTACGGTTACTGCAGTGTCG+GGG 0.688076 4_1:+13717146 Msa0536490:CDS
TGAGGTCACACACTAACATG+TGG 0.700299 4_1:-13717173 None:intergenic
CTATATATTCAAGCCCTGTG+AGG 0.700712 4_1:-13716257 None:intergenic
TACTCCCCATGGAGACAACG+TGG 0.723044 4_1:+13717359 Msa0536490:CDS
ATTGCCACGTTGTCTCCATG+GGG 0.723193 4_1:-13717363 None:intergenic
CTCAACACCATGATTCACTG+TGG 0.724851 4_1:-13718335 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATCTTTTAAAAGGTTTA+AGG + chr4_1:13716377-13716396 Msa0536490:CDS 15.0%
!! ACATTATCATACAAATAAAA+TGG - chr4_1:13716732-13716751 None:intergenic 15.0%
!! TTAATTATTCACTTATACTA+AGG - chr4_1:13716764-13716783 None:intergenic 15.0%
!! ATGATGTTTAATAAATCATA+TGG + chr4_1:13718136-13718155 Msa0536490:CDS 15.0%
!!! AAGTTGGAAAATCTTTTAAA+AGG + chr4_1:13716370-13716389 Msa0536490:CDS 20.0%
!! TTATCATACAAATAAAATGG+TGG - chr4_1:13716729-13716748 None:intergenic 20.0%
!! AGTTTATCTAACTCTATTAA+AGG - chr4_1:13717501-13717520 None:intergenic 20.0%
!! AACAAAGACTTTGTAAAATT+TGG - chr4_1:13717524-13717543 None:intergenic 20.0%
! AAGAAGTTTCCAAATTCTAT+TGG + chr4_1:13716231-13716250 Msa0536490:CDS 25.0%
! ATCAAGAATTCTTAAGACAA+AGG - chr4_1:13716574-13716593 None:intergenic 25.0%
! ATAAACCTGTAACATCAAAA+TGG - chr4_1:13716861-13716880 None:intergenic 25.0%
!! TAAAGATATTCCTCTTTTCT+GGG + chr4_1:13716948-13716967 Msa0536490:CDS 25.0%
! AGAGAATGATAAGATAAACT+CGG + chr4_1:13717023-13717042 Msa0536490:CDS 25.0%
! GAAATATATCACAAAGACTA+CGG + chr4_1:13717129-13717148 Msa0536490:CDS 25.0%
! ACAGTTGATTATAAATCGTT+GGG + chr4_1:13717281-13717300 Msa0536490:CDS 25.0%
!! ATTTTACAAAGTCTTTGTTG+AGG + chr4_1:13717525-13717544 Msa0536490:intron 25.0%
! TATGAATCAGCAATAAGTTT+AGG - chr4_1:13717686-13717705 None:intergenic 25.0%
! CATTATTCTATTGAAATGTC+AGG + chr4_1:13717979-13717998 Msa0536490:CDS 25.0%
! AATTCCTCAATAGTAGATAA+TGG - chr4_1:13718007-13718026 None:intergenic 25.0%
! TTATCTACTATTGAGGAATT+CGG + chr4_1:13718007-13718026 Msa0536490:CDS 25.0%
! AGTTTCCATCAAATATTTGT+CGG - chr4_1:13718203-13718222 None:intergenic 25.0%
TTGTTCTTTGCAGATATTTG+AGG + chr4_1:13715891-13715910 Msa0536490:CDS 30.0%
AATGTTTGGCATAAATCCAA+TGG - chr4_1:13716040-13716059 None:intergenic 30.0%
GCACTTAAGTAAACAATGTT+TGG - chr4_1:13716054-13716073 None:intergenic 30.0%
!!! CCATTTTTTGCATTACATCA+GGG - chr4_1:13716173-13716192 None:intergenic 30.0%
!!! TCCATTTTTTGCATTACATC+AGG - chr4_1:13716174-13716193 None:intergenic 30.0%
CCTATCATCAAAACTATCAA+TGG - chr4_1:13716201-13716220 None:intergenic 30.0%
!!! CCATTGATAGTTTTGATGAT+AGG + chr4_1:13716198-13716217 Msa0536490:CDS 30.0%
TAGACATGTCAGTTTGTAAA+AGG + chr4_1:13716277-13716296 Msa0536490:CDS 30.0%
! ACATTCAAGTCTTCCAATTT+TGG - chr4_1:13716507-13716526 None:intergenic 30.0%
GAGTTATTGTAGAAATCTCA+AGG + chr4_1:13716596-13716615 Msa0536490:CDS 30.0%
TCTACTTTCTGAATGCTTAA+TGG - chr4_1:13716636-13716655 None:intergenic 30.0%
CATCGTGTATGTAAAATTCA+TGG - chr4_1:13716800-13716819 None:intergenic 30.0%
! CATGAATTTTACATACACGA+TGG + chr4_1:13716798-13716817 Msa0536490:intron 30.0%
!! CAATTTGGAATTTTTGTTGC+TGG - chr4_1:13716914-13716933 None:intergenic 30.0%
CAGCAACAAAAATTCCAAAT+TGG + chr4_1:13716912-13716931 Msa0536490:CDS 30.0%
!!! AATTCCAAATTGGTTTTTCC+TGG + chr4_1:13716922-13716941 Msa0536490:CDS 30.0%
! GTAAAGATATTCCTCTTTTC+TGG + chr4_1:13716947-13716966 Msa0536490:CDS 30.0%
GGTTTGCATTTGTTTATTGA+TGG + chr4_1:13717102-13717121 Msa0536490:CDS 30.0%
GCATTTGTTTATTGATGGAA+AGG + chr4_1:13717107-13717126 Msa0536490:CDS 30.0%
! TTTTGTTCAATGATGAAGAG+TGG + chr4_1:13717199-13717218 Msa0536490:CDS 30.0%
!!! ATGCATGTTTTGGAAGAAAT+TGG + chr4_1:13717232-13717251 Msa0536490:CDS 30.0%
TGATTCACATTGAACTTGAA+CGG - chr4_1:13717262-13717281 None:intergenic 30.0%
CACAGTTGATTATAAATCGT+TGG + chr4_1:13717280-13717299 Msa0536490:CDS 30.0%
CAGTTGATTATAAATCGTTG+GGG + chr4_1:13717282-13717301 Msa0536490:CDS 30.0%
!! ATGAATCCAAGAGAAGTATT+TGG + chr4_1:13717465-13717484 Msa0536490:intron 30.0%
TAATCACCAAATACTTCTCT+TGG - chr4_1:13717474-13717493 None:intergenic 30.0%
TTGCTAAGGCCAATATTAAA+GGG + chr4_1:13717558-13717577 Msa0536490:CDS 30.0%
!! AAATATTCGAAAGAGTGTTG+AGG + chr4_1:13717732-13717751 Msa0536490:CDS 30.0%
!! AATATTCGAAAGAGTGTTGA+GGG + chr4_1:13717733-13717752 Msa0536490:CDS 30.0%
! CGAACTTAGTTGGAAATTTT+GGG + chr4_1:13717925-13717944 Msa0536490:CDS 30.0%
CATCATAACATCTTTCTCTA+CGG - chr4_1:13718122-13718141 None:intergenic 30.0%
TGTTTCCGACAAATATTTGA+TGG + chr4_1:13718195-13718214 Msa0536490:CDS 30.0%
TCTGAGAAGACTAGAAAATT+CGG + chr4_1:13718228-13718247 Msa0536490:CDS 30.0%
AATTTCAACAGGATACCTAA+TGG + chr4_1:13718265-13718284 Msa0536490:CDS 30.0%
! TATTGATGATACTCAACAGA+AGG + chr4_1:13718306-13718325 Msa0536490:CDS 30.0%
! TTTTTCCTGCTTGACTTATT+TGG - chr4_1:13718421-13718440 None:intergenic 30.0%
AAATAAGTCAAGCAGGAAAA+AGG + chr4_1:13718420-13718439 Msa0536490:CDS 30.0%
ACTCAAATACCTGATATCTC+TGG + chr4_1:13715952-13715971 Msa0536490:CDS 35.0%
TTTATAGCTCCAGAGATATC+AGG - chr4_1:13715964-13715983 None:intergenic 35.0%
CGTCAAACCTTACCAAATTA+CGG - chr4_1:13716014-13716033 None:intergenic 35.0%
AGACATGGAAGATACATTCT+TGG - chr4_1:13716108-13716127 None:intergenic 35.0%
CCCTGATGTAATGCAAAAAA+TGG + chr4_1:13716170-13716189 Msa0536490:CDS 35.0%
GTGAGGTTACCAATAGAATT+TGG - chr4_1:13716243-13716262 None:intergenic 35.0%
! AATTCTATTGGTAACCTCAC+AGG + chr4_1:13716243-13716262 Msa0536490:CDS 35.0%
! ATTCTATTGGTAACCTCACA+GGG + chr4_1:13716244-13716263 Msa0536490:CDS 35.0%
! ATTCGTAATGTGGCAAGTTT+TGG - chr4_1:13716336-13716355 None:intergenic 35.0%
GAATCCATCAATTCGTAATG+TGG - chr4_1:13716346-13716365 None:intergenic 35.0%
!! ATTGATGGATTCTCTCAAGT+TGG + chr4_1:13716354-13716373 Msa0536490:CDS 35.0%
ATCCATTCAGTAGTAGAAGA+AGG + chr4_1:13716402-13716421 Msa0536490:CDS 35.0%
TGAAGATCTCCACATTATCT+TGG + chr4_1:13716473-13716492 Msa0536490:CDS 35.0%
!! GAAAGCATTCCAAGATAATG+TGG - chr4_1:13716485-13716504 None:intergenic 35.0%
CTTGGAATGCTTTCCAAAAT+TGG + chr4_1:13716491-13716510 Msa0536490:CDS 35.0%
TGAATGCTTAATGGAAGTTC+TGG - chr4_1:13716627-13716646 None:intergenic 35.0%
TTGCGAAAGCTTAACTTCAA+AGG + chr4_1:13716665-13716684 Msa0536490:CDS 35.0%
!! GATGACCATTTTGATGTTAC+AGG + chr4_1:13716853-13716872 Msa0536490:intron 35.0%
GTTACAGGTTTATGAAGAGA+AGG + chr4_1:13716868-13716887 Msa0536490:intron 35.0%
AGAGAAGGAAAGAATACAAG+TGG + chr4_1:13716883-13716902 Msa0536490:intron 35.0%
ACTACCAGGAAAAACCAATT+TGG - chr4_1:13716929-13716948 None:intergenic 35.0%
AGAGGAATATCTTTACTACC+AGG - chr4_1:13716943-13716962 None:intergenic 35.0%
! TCAACCTCAAAAGTTTTACC+TGG + chr4_1:13717051-13717070 Msa0536490:CDS 35.0%
! CATTCCAGGTAAAACTTTTG+AGG - chr4_1:13717058-13717077 None:intergenic 35.0%
! CTCAAAAGTTTTACCTGGAA+TGG + chr4_1:13717056-13717075 Msa0536490:CDS 35.0%
CAAATGCAAACCAACAACAT+GGG - chr4_1:13717094-13717113 None:intergenic 35.0%
ACAAATGCAAACCAACAACA+TGG - chr4_1:13717095-13717114 None:intergenic 35.0%
CATCATTGAACAAAATCCTG+AGG - chr4_1:13717194-13717213 None:intergenic 35.0%
TTCAATGATGAAGAGTGGAA+GGG + chr4_1:13717204-13717223 Msa0536490:CDS 35.0%
! AAGGGTCTTAATGCATGTTT+TGG + chr4_1:13717222-13717241 Msa0536490:CDS 35.0%
CTTGCTAAGGCCAATATTAA+AGG + chr4_1:13717557-13717576 Msa0536490:CDS 35.0%
TGCTAAGGCCAATATTAAAG+GGG + chr4_1:13717559-13717578 Msa0536490:CDS 35.0%
TGGAGATTCCCCTTTAATAT+TGG - chr4_1:13717570-13717589 None:intergenic 35.0%
! TTGCTTTAAACTTGCTCCAT+AGG - chr4_1:13717603-13717622 None:intergenic 35.0%
!! ATTGCTGATTCATACACAGA+TGG + chr4_1:13717692-13717711 Msa0536490:CDS 35.0%
AAGAAACAAGATCTTATCCG+CGG + chr4_1:13717773-13717792 Msa0536490:CDS 35.0%
TCATCTGCTTATTATCCTTG+AGG + chr4_1:13717805-13717824 Msa0536490:CDS 35.0%
! GGAAGATTGATGATAGAACA+TGG + chr4_1:13717866-13717885 Msa0536490:CDS 35.0%
AATAACACTGCGTTGAACTT+TGG - chr4_1:13717896-13717915 None:intergenic 35.0%
! GCGAACTTAGTTGGAAATTT+TGG + chr4_1:13717924-13717943 Msa0536490:CDS 35.0%
GGTTCCATTATCTACTATTG+AGG + chr4_1:13718000-13718019 Msa0536490:CDS 35.0%
TAACTATGAGGAAGATGAAG+AGG + chr4_1:13718045-13718064 Msa0536490:CDS 35.0%
CTGAGAAGACTAGAAAATTC+GGG + chr4_1:13718229-13718248 Msa0536490:CDS 35.0%
GGATAGGATCTAATTTCAAC+AGG + chr4_1:13718254-13718273 Msa0536490:CDS 35.0%
ACTTGACAGATGCCGTAATT+TGG + chr4_1:13715999-13716018 Msa0536490:CDS 40.0%
ACAGATGCCGTAATTTGGTA+AGG + chr4_1:13716004-13716023 Msa0536490:CDS 40.0%
AATGAGAGAAACTCGAGACA+TGG - chr4_1:13716123-13716142 None:intergenic 40.0%
CTATATATTCAAGCCCTGTG+AGG - chr4_1:13716260-13716279 None:intergenic 40.0%
CTTGCCACATTACGAATTGA+TGG + chr4_1:13716339-13716358 Msa0536490:CDS 40.0%
AGCCTTCTTCTACTACTGAA+TGG - chr4_1:13716407-13716426 None:intergenic 40.0%
AGAAGAAGGCTTCTCGAATT+TGG + chr4_1:13716416-13716435 Msa0536490:CDS 40.0%
! TTGGTGACACTGCATTTAAG+TGG + chr4_1:13716435-13716454 Msa0536490:CDS 40.0%
TCTATCCCACAATGCATCAA+AGG + chr4_1:13716546-13716565 Msa0536490:CDS 40.0%
AGGATCCTTTGATGCATTGT+GGG - chr4_1:13716554-13716573 None:intergenic 40.0%
AAGGATCCTTTGATGCATTG+TGG - chr4_1:13716555-13716574 None:intergenic 40.0%
TTATTGAGAGCCCAGAAAAG+AGG - chr4_1:13716961-13716980 None:intergenic 40.0%
CGAATGCTAATGCAACAACA+GGG - chr4_1:13716987-13717006 None:intergenic 40.0%
TCGAATGCTAATGCAACAAC+AGG - chr4_1:13716988-13717007 None:intergenic 40.0%
TGTTGCATTAGCATTCGAGT+TGG + chr4_1:13716990-13717009 Msa0536490:CDS 40.0%
! GTTGCATTAGCATTCGAGTT+GGG + chr4_1:13716991-13717010 Msa0536490:CDS 40.0%
GTTCAATGATGAAGAGTGGA+AGG + chr4_1:13717203-13717222 Msa0536490:CDS 40.0%
ATCTCATTTGATACTCCCCA+TGG + chr4_1:13717348-13717367 Msa0536490:CDS 40.0%
ACCAAACCAGATGCTAGAAT+CGG - chr4_1:13717390-13717409 None:intergenic 40.0%
AGCATACGAGGAATTACCTT+TGG - chr4_1:13717414-13717433 None:intergenic 40.0%
AAGCAAGAACACGAAGATTG+TGG + chr4_1:13717617-13717636 Msa0536490:CDS 40.0%
AAGAACACGAAGATTGTGGT+TGG + chr4_1:13717621-13717640 Msa0536490:CDS 40.0%
AGAACACGAAGATTGTGGTT+GGG + chr4_1:13717622-13717641 Msa0536490:CDS 40.0%
AGAAACAAGATCTTATCCGC+GGG + chr4_1:13717774-13717793 Msa0536490:CDS 40.0%
!! AAGCTTTGAGTCATCGCTAT+TGG + chr4_1:13717843-13717862 Msa0536490:CDS 40.0%
!! AGCTTTGAGTCATCGCTATT+GGG + chr4_1:13717844-13717863 Msa0536490:CDS 40.0%
TGAAGACAAGCGAACTTAGT+TGG + chr4_1:13717915-13717934 Msa0536490:CDS 40.0%
AACCTCTGAGTCTAACTATG+AGG + chr4_1:13718033-13718052 Msa0536490:CDS 40.0%
TTCCTCATAGTTAGACTCAG+AGG - chr4_1:13718038-13718057 None:intergenic 40.0%
! AGAGGACGTTGATACTGATT+TGG + chr4_1:13718081-13718100 Msa0536490:CDS 40.0%
GAAGACTAGAAAATTCGGGA+AGG + chr4_1:13718233-13718252 Msa0536490:CDS 40.0%
CTAGAAAATTCGGGAAGGAT+AGG + chr4_1:13718238-13718257 Msa0536490:CDS 40.0%
GATACCTAATGGAACGTTGA+GGG + chr4_1:13718276-13718295 Msa0536490:CDS 40.0%
ATGCTCCAAATAAGTCAAGC+AGG + chr4_1:13718413-13718432 Msa0536490:CDS 40.0%
GCAGGAAAAAGGTTGTTATG+AGG + chr4_1:13718431-13718450 Msa0536490:CDS 40.0%
GGAAAAAGGTTGTTATGAGG+TGG + chr4_1:13718434-13718453 Msa0536490:CDS 40.0%
GTAAGGTTTGACGAGTCCAT+TGG + chr4_1:13716021-13716040 Msa0536490:CDS 45.0%
ATCAAGCGTGCTATGGTCAA+TGG + chr4_1:13716689-13716708 Msa0536490:CDS 45.0%
TCCTCTAAGTCCCATGTTGT+TGG + chr4_1:13717081-13717100 Msa0536490:CDS 45.0%
ACCAACAACATGGGACTTAG+AGG - chr4_1:13717085-13717104 None:intergenic 45.0%
TGAGGTCACACACTAACATG+TGG - chr4_1:13717176-13717195 None:intergenic 45.0%
ACATGTTAGTGTGTGACCTC+AGG + chr4_1:13717175-13717194 Msa0536490:CDS 45.0%
CCAAACCAGATGCTAGAATC+GGG - chr4_1:13717389-13717408 None:intergenic 45.0%
!! AGCATCTGGTTTGGTTCCAA+AGG + chr4_1:13717395-13717414 Msa0536490:CDS 45.0%
CAAAGTCTTTGTTGAGGTCG+TGG + chr4_1:13717531-13717550 Msa0536490:intron 45.0%
! TGTGGTACGTGTTGTTGAGT+TGG + chr4_1:13717646-13717665 Msa0536490:CDS 45.0%
!! ACGTGTTGTTGAGTTGGTGA+AGG + chr4_1:13717652-13717671 Msa0536490:CDS 45.0%
GACTCAAAGCTTCACCAGAA+TGG - chr4_1:13717835-13717854 None:intergenic 45.0%
! GCTTTGAGTCATCGCTATTG+GGG + chr4_1:13717845-13717864 Msa0536490:CDS 45.0%
TGAGGAAGATGAAGAGGAAG+AGG + chr4_1:13718051-13718070 Msa0536490:CDS 45.0%
AGATGAAGAGGAAGAGGAAG+AGG + chr4_1:13718057-13718076 Msa0536490:CDS 45.0%
GGATACCTAATGGAACGTTG+AGG + chr4_1:13718275-13718294 Msa0536490:CDS 45.0%
GATGAGACCACAGTGAATCA+TGG + chr4_1:13718328-13718347 Msa0536490:CDS 45.0%
CTCAACACCATGATTCACTG+TGG - chr4_1:13718338-13718357 None:intergenic 45.0%
!! CAAAGGCATCAAGCGTGCTA+TGG + chr4_1:13716682-13716701 Msa0536490:CDS 50.0%
GACTTAGAGGACACCATTCC+AGG - chr4_1:13717072-13717091 None:intergenic 50.0%
GACTACGGTTACTGCAGTGT+CGG + chr4_1:13717144-13717163 Msa0536490:CDS 50.0%
ACTACGGTTACTGCAGTGTC+GGG + chr4_1:13717145-13717164 Msa0536490:CDS 50.0%
ATTGCCACGTTGTCTCCATG+GGG - chr4_1:13717366-13717385 None:intergenic 50.0%
GATTGCCACGTTGTCTCCAT+GGG - chr4_1:13717367-13717386 None:intergenic 50.0%
GCAATCCCGATTCTAGCATC+TGG + chr4_1:13717381-13717400 Msa0536490:CDS 50.0%
CCCGATTCTAGCATCTGGTT+TGG + chr4_1:13717386-13717405 Msa0536490:CDS 50.0%
CGAAGATTGTGGTTGGGATG+TGG + chr4_1:13717628-13717647 Msa0536490:CDS 50.0%
!! TCGAAAGAGTGTTGAGGGAG+AGG + chr4_1:13717738-13717757 Msa0536490:CDS 50.0%
!! CGAAAGAGTGTTGAGGGAGA+GGG + chr4_1:13717739-13717758 Msa0536490:CDS 50.0%
ACAAGATCTTATCCGCGGGT+TGG + chr4_1:13717778-13717797 Msa0536490:CDS 50.0%
GCAGATGAATATCCAACCCG+CGG - chr4_1:13717793-13717812 None:intergenic 50.0%
ATCCTTGAGGCATGCCATTC+TGG + chr4_1:13717818-13717837 Msa0536490:CDS 50.0%
AGAGGAAGAGGAAGAGGAAG+AGG + chr4_1:13718063-13718082 Msa0536490:CDS 50.0%
ACCTAATGGAACGTTGAGGG+TGG + chr4_1:13718279-13718298 Msa0536490:CDS 50.0%
TCCACCCTCAACGTTCCATT+AGG - chr4_1:13718283-13718302 None:intergenic 50.0%
CTACGGTTACTGCAGTGTCG+GGG + chr4_1:13717146-13717165 Msa0536490:CDS 55.0%
TACTCCCCATGGAGACAACG+TGG + chr4_1:13717359-13717378 Msa0536490:CDS 55.0%
GGATTGCCACGTTGTCTCCA+TGG - chr4_1:13717368-13717387 None:intergenic 55.0%
GTTCTCTGCTCGAGCATACG+AGG - chr4_1:13717426-13717445 None:intergenic 55.0%
! GAGGTCGTGGATGCTTGCTA+AGG + chr4_1:13717544-13717563 Msa0536490:CDS 55.0%
ACTTGCTCCATAGGCAGCAG+AGG - chr4_1:13717594-13717613 None:intergenic 55.0%
CACCAGAATGGCATGCCTCA+AGG - chr4_1:13717823-13717842 None:intergenic 55.0%
TCTCCAGCCTCTGCTGCCTA+TGG + chr4_1:13717584-13717603 Msa0536490:CDS 60.0%
GCTCCATAGGCAGCAGAGGC+TGG - chr4_1:13717590-13717609 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 13715886 13718477 13715886 ID=Msa0536490;Name=Msa0536490
chr4_1 mRNA 13715886 13718477 13715886 ID=Msa0536490-mRNA-1;Parent=Msa0536490;Name=Msa0536490-mRNA-1;_AED=0.04;_eAED=0.07;_QI=0|0|0|1|1|1|3|0|775
chr4_1 exon 13715886 13716739 13715886 ID=Msa0536490-mRNA-1:exon:4351;Parent=Msa0536490-mRNA-1
chr4_1 exon 13716885 13717416 13716885 ID=Msa0536490-mRNA-1:exon:4352;Parent=Msa0536490-mRNA-1
chr4_1 exon 13717536 13718477 13717536 ID=Msa0536490-mRNA-1:exon:4353;Parent=Msa0536490-mRNA-1
chr4_1 CDS 13715886 13716739 13715886 ID=Msa0536490-mRNA-1:cds;Parent=Msa0536490-mRNA-1
chr4_1 CDS 13716885 13717416 13716885 ID=Msa0536490-mRNA-1:cds;Parent=Msa0536490-mRNA-1
chr4_1 CDS 13717536 13718477 13717536 ID=Msa0536490-mRNA-1:cds;Parent=Msa0536490-mRNA-1
Gene Sequence

>Msa0536490

TTGTATTGTTCTTTGCAGATATTTGAGGATTTGACATTCATTAATCTCTCTCAGTGTCATTCTGTAACTCAAATACCTGATATCTCTGGAGCTATAAATTTAAGAGTATTGACACTTGACAGATGCCGTAATTTGGTAAGGTTTGACGAGTCCATTGGATTTATGCCAAACATTGTTTACTTAAGTGCTTCAGAGTGCACAATGCTCAAAAGTTTTGTGCCAAGAATGTATCTTCCATGTCTCGAGTTTCTCTCATTTAACTTATGCAGAAGACTTGCACACTTCCCTGATGTAATGCAAAAAATGGATAAGCCATTGATAGTTTTGATGATAGGTACTGCTATTAAGAAGTTTCCAAATTCTATTGGTAACCTCACAGGGCTTGAATATATAGACATGTCAGTTTGTAAAAGGCTCAATGATCTGTCAAGTAGCTTCTTGTTGTTGCCAAAACTTGCCACATTACGAATTGATGGATTCTCTCAAGTTGGAAAATCTTTTAAAAGGTTTAAGGTGATCCATTCAGTAGTAGAAGAAGGCTTCTCGAATTTGGTGACACTGCATTTAAGTGGTTCTAATCTATCAGATGAAGATCTCCACATTATCTTGGAATGCTTTCCAAAATTGGAAGACTTGAATGTGTCGCACAGTAATTTTGCATCTATCCCACAATGCATCAAAGGATCCTTTGTCTTAAGAATTCTTGATGTGAGTTATTGTAGAAATCTCAAGGAGATTCCAGAACTTCCATTAAGCATTCAGAAAGTAGATGCAAGATATTGCGAAAGCTTAACTTCAAAGGCATCAAGCGTGCTATGGTCAATGGTTTGTCTACTTTATCCACCATTTTATTTAGAAGGAAAGAATACAAGTGGTGATGCCAGCAACAAAAATTCCAAATTGGTTTTTCCTGGTAGTAAAGATATTCCTCTTTTCTGGGCTCTCAATAACTTCCCTGTTGTTGCATTAGCATTCGAGTTGGGTGAAGTAAAAGAGAATGATAAGATAAACTCGGACACTTCAACCTCAAAAGTTTTACCTGGAATGGTGTCCTCTAAGTCCCATGTTGTTGGTTTGCATTTGTTTATTGATGGAAAGGAAATATATCACAAAGACTACGGTTACTGCAGTGTCGGGGAACACCACATGTTAGTGTGTGACCTCAGGATTTTGTTCAATGATGAAGAGTGGAAGGGTCTTAATGCATGTTTTGGAAGAAATTGGAAGACCGTTCAAGTTCAATGTGAATCACAGTTGATTATAAATCGTTGGGGACTTTACATGTACAAACAGAAAACAAATCACACTGATGATAATATCTCATTTGATACTCCCCATGGAGACAACGTGGCAATCCCGATTCTAGCATCTGGTTTGGTTCCAAAGTCTTTGTTGAGGTCGTGGATGCTTGCTAAGGCCAATATTAAAGGGGAATCTCCAGCCTCTGCTGCCTATGGAGCAAGTTTAAAGCAAGAACACGAAGATTGTGGTTGGGATGTGGTACGTGTTGTTGAGTTGGTGAAGGAGAATATACCTAAACTTATTGCTGATTCATACACAGATGGCATACTGAGTGCACAACAAATATTCGAAAGAGTGTTGAGGGAGAGGGAAAAGTTTCTGAAGAAACAAGATCTTATCCGCGGGTTGGATATTCATCTGCTTATTATCCTTGAGGCATGCCATTCTGGTGAAGCTTTGAGTCATCGCTATTGGGGAAGATTGATGATAGAACATGGAGATCCAAAGTTCAACGCAGTGTTATTGAAGACAAGCGAACTTAGTTGGAAATTTTGGGACAGCAGTGAAACGTCGCGTGATAAGATGAACATTATTCTATTGAAATGTCAGGTTCCATTATCTACTATTGAGGAATTCGGTTCAACCTCTGAGTCTAACTATGAGGAAGATGAAGAGGAAGAGGAAGAGGAAGAGGACGTTGATACTGATTTGGATGTGTTACTAAGCACCGTAGAGAAAGATGTTATGATGTTTAATAAATCATATGGCATGTTGCAAGCATCTATTGTTCTAACTGAAGATCTTGTTTCCGACAAATATTTGATGGAAACTTTATCTCTGAGAAGACTAGAAAATTCGGGAAGGATAGGATCTAATTTCAACAGGATACCTAATGGAACGTTGAGGGTGGAAGATATTGATGATACTCAACAGAAGGATGAGACCACAGTGAATCATGGTGTTGAGCAAGCAGTTCAGAATCAGAATCAGAATCAAAATCAAATGATGCTTGAGTTGACGAATGCTCCAAATAAGTCAAGCAGGAAAAAGGTTGTTATGAGGTGGATTCTATGTTGCTTCACTTAA
Protein sequence

>Msa0536490

LYCSLQIFEDLTFINLSQCHSVTQIPDISGAINLRVLTLDRCRNLVRFDESIGFMPNIVYLSASECTMLKSFVPRMYLPCLEFLSFNLCRRLAHFPDVMQKMDKPLIVLMIGTAIKKFPNSIGNLTGLEYIDMSVCKRLNDLSSSFLLLPKLATLRIDGFSQVGKSFKRFKVIHSVVEEGFSNLVTLHLSGSNLSDEDLHIILECFPKLEDLNVSHSNFASIPQCIKGSFVLRILDVSYCRNLKEIPELPLSIQKVDARYCESLTSKASSVLWSMVCLLYPPFYLEGKNTSGDASNKNSKLVFPGSKDIPLFWALNNFPVVALAFELGEVKENDKINSDTSTSKVLPGMVSSKSHVVGLHLFIDGKEIYHKDYGYCSVGEHHMLVCDLRILFNDEEWKGLNACFGRNWKTVQVQCESQLIINRWGLYMYKQKTNHTDDNISFDTPHGDNVAIPILASGLVPKSLLRSWMLAKANIKGESPASAAYGASLKQEHEDCGWDVVRVVELVKENIPKLIADSYTDGILSAQQIFERVLREREKFLKKQDLIRGLDIHLLIILEACHSGEALSHRYWGRLMIEHGDPKFNAVLLKTSELSWKFWDSSETSRDKMNIILLKCQVPLSTIEEFGSTSESNYEEDEEEEEEEEDVDTDLDVLLSTVEKDVMMFNKSYGMLQASIVLTEDLVSDKYLMETLSLRRLENSGRIGSNFNRIPNGTLRVEDIDDTQQKDETTVNHGVEQAVQNQNQNQNQMMLELTNAPNKSSRKKVVMRWILCCFT*