Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539720 | XP_013455276.1 | 90.877 | 559 | 51 | 0 | 1 | 559 | 1 | 559 | 0.0 | 1031 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539720 | sp|Q0WP01|PTR9_ARATH | 64.351 | 547 | 183 | 2 | 10 | 549 | 9 | 550 | 0.0 | 690 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539720 | A0A072UI11 | 90.877 | 559 | 51 | 0 | 1 | 559 | 1 | 559 | 0.0 | 1031 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0539720 | Msa0812220 | 0.801326 | 9.492815e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539720 | MtrunA17_Chr4g0014781 | 90.877 | 559 | 51 | 0 | 1 | 559 | 1 | 559 | 0.0 | 1031 |
| Msa0539720 | MtrunA17_Chr4g0014801 | 90.877 | 559 | 51 | 0 | 1 | 559 | 1 | 559 | 0.0 | 1016 |
| Msa0539720 | MtrunA17_Chr4g0014791 | 89.286 | 560 | 56 | 2 | 1 | 559 | 1 | 557 | 0.0 | 1013 |
| Msa0539720 | MtrunA17_Chr4g0014871 | 86.275 | 561 | 75 | 2 | 1 | 559 | 1 | 561 | 0.0 | 1008 |
| Msa0539720 | MtrunA17_Chr4g0014841 | 88.551 | 559 | 62 | 1 | 1 | 559 | 1 | 557 | 0.0 | 1002 |
| Msa0539720 | MtrunA17_Chr4g0014861 | 86.175 | 434 | 59 | 1 | 125 | 557 | 1 | 434 | 0.0 | 787 |
| Msa0539720 | MtrunA17_Chr3g0077151 | 67.463 | 544 | 166 | 5 | 13 | 554 | 12 | 546 | 0.0 | 725 |
| Msa0539720 | MtrunA17_Chr8g0353031 | 47.145 | 543 | 255 | 6 | 30 | 551 | 19 | 550 | 3.67e-163 | 476 |
| Msa0539720 | MtrunA17_Chr7g0241741 | 41.062 | 565 | 308 | 6 | 8 | 551 | 1 | 561 | 6.77e-160 | 468 |
| Msa0539720 | MtrunA17_Chr8g0375311 | 42.281 | 570 | 299 | 9 | 10 | 554 | 21 | 585 | 2.02e-159 | 467 |
| Msa0539720 | MtrunA17_Chr7g0261811 | 41.563 | 563 | 305 | 6 | 17 | 558 | 15 | 574 | 7.10e-157 | 461 |
| Msa0539720 | MtrunA17_Chr8g0375291 | 42.909 | 550 | 286 | 8 | 17 | 542 | 28 | 573 | 1.02e-154 | 455 |
| Msa0539720 | MtrunA17_Chr4g0005901 | 40.248 | 564 | 312 | 6 | 10 | 552 | 13 | 572 | 3.92e-154 | 453 |
| Msa0539720 | MtrunA17_Chr4g0008651 | 40.647 | 556 | 303 | 6 | 17 | 552 | 22 | 570 | 1.77e-152 | 450 |
| Msa0539720 | MtrunA17_Chr3g0104011 | 41.476 | 569 | 300 | 8 | 10 | 552 | 3 | 564 | 9.07e-152 | 447 |
| Msa0539720 | MtrunA17_Chr7g0261791 | 41.293 | 557 | 302 | 6 | 17 | 551 | 17 | 570 | 2.33e-151 | 447 |
| Msa0539720 | MtrunA17_Chr7g0261881 | 38.721 | 563 | 321 | 6 | 17 | 558 | 15 | 574 | 9.56e-149 | 440 |
| Msa0539720 | MtrunA17_Chr3g0114501 | 40.681 | 558 | 308 | 8 | 17 | 554 | 10 | 564 | 2.37e-148 | 439 |
| Msa0539720 | MtrunA17_Chr3g0112671 | 39.572 | 561 | 306 | 8 | 10 | 551 | 14 | 560 | 3.27e-148 | 438 |
| Msa0539720 | MtrunA17_Chr1g0166791 | 41.293 | 557 | 301 | 8 | 17 | 551 | 12 | 564 | 1.36e-147 | 437 |
| Msa0539720 | MtrunA17_Chr3g0112611 | 39.543 | 569 | 314 | 8 | 3 | 551 | 11 | 569 | 2.16e-147 | 437 |
| Msa0539720 | MtrunA17_Chr1g0166711 | 42.266 | 556 | 296 | 8 | 17 | 551 | 13 | 564 | 3.49e-147 | 436 |
| Msa0539720 | MtrunA17_Chr7g0240381 | 39.568 | 556 | 303 | 8 | 17 | 552 | 17 | 559 | 2.20e-146 | 434 |
| Msa0539720 | MtrunA17_Chr8g0375351 | 40.747 | 562 | 305 | 8 | 17 | 554 | 28 | 585 | 2.88e-145 | 431 |
| Msa0539720 | MtrunA17_Chr1g0187241 | 40.036 | 557 | 308 | 7 | 17 | 551 | 14 | 566 | 3.43e-144 | 428 |
| Msa0539720 | MtrunA17_Chr7g0261771 | 39.748 | 556 | 311 | 6 | 17 | 551 | 19 | 571 | 4.70e-144 | 429 |
| Msa0539720 | MtrunA17_Chr8g0375341 | 40.248 | 564 | 305 | 11 | 17 | 555 | 28 | 584 | 1.15e-143 | 427 |
| Msa0539720 | MtrunA17_Chr8g0375361 | 40.177 | 565 | 310 | 7 | 17 | 557 | 27 | 587 | 2.27e-141 | 421 |
| Msa0539720 | MtrunA17_Chr8g0375331 | 38.986 | 572 | 316 | 9 | 1 | 548 | 1 | 563 | 3.70e-138 | 412 |
| Msa0539720 | MtrunA17_Chr8g0375321 | 38.669 | 556 | 313 | 7 | 17 | 548 | 25 | 576 | 2.83e-137 | 410 |
| Msa0539720 | MtrunA17_Chr1g0166741 | 39.292 | 537 | 293 | 8 | 17 | 531 | 15 | 540 | 1.75e-136 | 408 |
| Msa0539720 | MtrunA17_Chr7g0261851 | 38.061 | 557 | 319 | 6 | 17 | 551 | 16 | 568 | 3.12e-134 | 403 |
| Msa0539720 | MtrunA17_Chr1g0166771 | 40.472 | 509 | 270 | 8 | 48 | 534 | 10 | 507 | 3.48e-128 | 386 |
| Msa0539720 | MtrunA17_Chr5g0399061 | 37.913 | 575 | 326 | 8 | 12 | 559 | 10 | 580 | 1.07e-127 | 386 |
| Msa0539720 | MtrunA17_Chr3g0082631 | 41.929 | 477 | 234 | 9 | 102 | 553 | 3 | 461 | 1.25e-126 | 379 |
| Msa0539720 | MtrunA17_Chr4g0056431 | 38.632 | 585 | 319 | 8 | 8 | 559 | 4 | 581 | 1.74e-126 | 383 |
| Msa0539720 | MtrunA17_Chr5g0399071 | 39.474 | 570 | 306 | 11 | 21 | 559 | 17 | 578 | 7.85e-125 | 379 |
| Msa0539720 | MtrunA17_Chr5g0422881 | 37.209 | 559 | 319 | 10 | 28 | 559 | 19 | 572 | 3.65e-124 | 377 |
| Msa0539720 | MtrunA17_Chr3g0142101 | 36.852 | 559 | 318 | 11 | 9 | 545 | 15 | 560 | 1.44e-121 | 370 |
| Msa0539720 | MtrunA17_Chr7g0255621 | 35.842 | 558 | 325 | 9 | 25 | 555 | 16 | 567 | 5.09e-119 | 364 |
| Msa0539720 | MtrunA17_Chr7g0255611 | 35.563 | 568 | 329 | 11 | 1 | 541 | 7 | 564 | 1.56e-118 | 363 |
| Msa0539720 | MtrunA17_Chr7g0217461 | 36.426 | 582 | 333 | 12 | 10 | 559 | 5 | 581 | 6.84e-117 | 358 |
| Msa0539720 | MtrunA17_Chr6g0451841 | 37.571 | 527 | 293 | 9 | 48 | 552 | 24 | 536 | 5.18e-115 | 352 |
| Msa0539720 | MtrunA17_Chr7g0255601 | 34.561 | 570 | 342 | 9 | 9 | 551 | 7 | 572 | 1.17e-112 | 348 |
| Msa0539720 | MtrunA17_Chr4g0063591 | 40.036 | 552 | 302 | 8 | 16 | 545 | 9 | 553 | 1.45e-111 | 344 |
| Msa0539720 | MtrunA17_Chr7g0214461 | 34.182 | 550 | 328 | 10 | 23 | 548 | 72 | 611 | 5.50e-111 | 344 |
| Msa0539720 | MtrunA17_Chr1g0166731 | 40.570 | 456 | 246 | 8 | 116 | 550 | 9 | 460 | 2.29e-110 | 337 |
| Msa0539720 | MtrunA17_Chr5g0415791 | 35.368 | 557 | 318 | 9 | 29 | 551 | 29 | 577 | 4.81e-110 | 341 |
| Msa0539720 | MtrunA17_Chr5g0400371 | 34.896 | 576 | 339 | 10 | 3 | 548 | 86 | 655 | 2.12e-109 | 341 |
| Msa0539720 | MtrunA17_Chr7g0261661 | 38.596 | 456 | 256 | 6 | 117 | 551 | 1 | 453 | 1.75e-108 | 333 |
| Msa0539720 | MtrunA17_Chr5g0415961 | 34.079 | 581 | 343 | 10 | 11 | 558 | 6 | 579 | 1.72e-107 | 333 |
| Msa0539720 | MtrunA17_Chr1g0213711 | 33.448 | 580 | 338 | 11 | 9 | 559 | 1 | 561 | 4.11e-107 | 333 |
| Msa0539720 | MtrunA17_Chr4g0054891 | 35.450 | 567 | 325 | 13 | 10 | 546 | 91 | 646 | 1.71e-106 | 333 |
| Msa0539720 | MtrunA17_Chr8g0362711 | 35.512 | 566 | 324 | 9 | 18 | 550 | 13 | 570 | 5.96e-106 | 329 |
| Msa0539720 | MtrunA17_Chr3g0142091 | 35.409 | 562 | 326 | 11 | 20 | 558 | 17 | 564 | 3.16e-105 | 328 |
| Msa0539720 | MtrunA17_Chr7g0261751 | 37.238 | 478 | 241 | 7 | 17 | 437 | 19 | 494 | 7.12e-104 | 322 |
| Msa0539720 | MtrunA17_Chr2g0284701 | 34.072 | 587 | 348 | 10 | 2 | 551 | 4 | 588 | 8.33e-103 | 322 |
| Msa0539720 | MtrunA17_Chr7g0218851 | 33.095 | 559 | 324 | 12 | 23 | 548 | 40 | 581 | 1.04e-101 | 319 |
| Msa0539720 | MtrunA17_Chr4g0059971 | 35.219 | 548 | 323 | 10 | 35 | 552 | 40 | 585 | 6.42e-101 | 317 |
| Msa0539720 | MtrunA17_Chr8g0362781 | 33.157 | 567 | 340 | 8 | 23 | 555 | 24 | 585 | 1.86e-100 | 315 |
| Msa0539720 | MtrunA17_Chr2g0276751 | 35.097 | 567 | 336 | 11 | 10 | 558 | 19 | 571 | 4.13e-100 | 315 |
| Msa0539720 | MtrunA17_Chr1g0157611 | 34.103 | 563 | 332 | 10 | 16 | 548 | 1 | 554 | 3.45e-99 | 311 |
| Msa0539720 | MtrunA17_Chr1g0157601 | 34.502 | 542 | 322 | 10 | 33 | 548 | 19 | 553 | 5.20e-98 | 308 |
| Msa0539720 | MtrunA17_Chr8g0379971 | 34.464 | 560 | 312 | 11 | 15 | 522 | 6 | 562 | 5.38e-98 | 310 |
| Msa0539720 | MtrunA17_Chr4g0011041 | 32.327 | 563 | 342 | 10 | 17 | 548 | 24 | 578 | 7.45e-98 | 308 |
| Msa0539720 | MtrunA17_Chr5g0439381 | 36.022 | 558 | 317 | 9 | 17 | 551 | 16 | 556 | 1.26e-97 | 308 |
| Msa0539720 | MtrunA17_Chr1g0147631 | 33.860 | 570 | 337 | 11 | 4 | 548 | 10 | 564 | 1.47e-97 | 308 |
| Msa0539720 | MtrunA17_Chr8g0390331 | 33.935 | 554 | 329 | 12 | 23 | 548 | 9 | 553 | 6.23e-97 | 306 |
| Msa0539720 | MtrunA17_Chr3g0133341 | 33.696 | 552 | 330 | 11 | 25 | 551 | 10 | 550 | 8.95e-97 | 305 |
| Msa0539720 | MtrunA17_Chr4g0059991 | 33.698 | 549 | 327 | 10 | 35 | 550 | 28 | 572 | 5.28e-96 | 304 |
| Msa0539720 | MtrunA17_Chr7g0214731 | 31.851 | 562 | 340 | 10 | 30 | 555 | 62 | 616 | 2.56e-93 | 298 |
| Msa0539720 | MtrunA17_Chr1g0157621 | 34.674 | 522 | 307 | 10 | 53 | 548 | 4 | 517 | 3.75e-92 | 293 |
| Msa0539720 | MtrunA17_Chr4g0059981 | 33.218 | 578 | 343 | 11 | 6 | 552 | 17 | 582 | 9.00e-90 | 288 |
| Msa0539720 | MtrunA17_Chr4g0060001 | 32.496 | 557 | 341 | 8 | 27 | 555 | 27 | 576 | 1.90e-89 | 287 |
| Msa0539720 | MtrunA17_Chr4g0011471 | 32.008 | 528 | 322 | 9 | 50 | 548 | 37 | 556 | 2.34e-89 | 286 |
| Msa0539720 | MtrunA17_Chr7g0240271 | 30.796 | 565 | 351 | 9 | 17 | 549 | 12 | 568 | 3.95e-89 | 286 |
| Msa0539720 | MtrunA17_Chr4g0069581 | 34.702 | 487 | 285 | 11 | 87 | 552 | 44 | 518 | 1.01e-87 | 281 |
| Msa0539720 | MtrunA17_Chr4g0003761 | 32.486 | 551 | 339 | 11 | 25 | 550 | 27 | 569 | 1.60e-87 | 282 |
| Msa0539720 | MtrunA17_Chr2g0331521 | 30.357 | 560 | 356 | 10 | 17 | 548 | 10 | 563 | 5.63e-87 | 280 |
| Msa0539720 | MtrunA17_Chr2g0331471 | 33.624 | 574 | 336 | 17 | 10 | 550 | 68 | 629 | 5.68e-87 | 283 |
| Msa0539720 | MtrunA17_Chr2g0331481 | 31.944 | 576 | 344 | 15 | 10 | 550 | 4 | 566 | 2.16e-86 | 280 |
| Msa0539720 | MtrunA17_Chr2g0331511 | 31.634 | 569 | 349 | 13 | 10 | 548 | 4 | 562 | 1.32e-85 | 278 |
| Msa0539720 | MtrunA17_Chr8g0379991 | 34.513 | 565 | 306 | 10 | 58 | 559 | 9 | 572 | 1.98e-85 | 276 |
| Msa0539720 | MtrunA17_Chr1g0177591 | 32.000 | 550 | 333 | 14 | 21 | 550 | 36 | 564 | 3.22e-85 | 275 |
| Msa0539720 | MtrunA17_Chr7g0271221 | 32.288 | 542 | 340 | 11 | 29 | 553 | 17 | 548 | 4.65e-84 | 273 |
| Msa0539720 | MtrunA17_Chr1g0193391 | 30.935 | 556 | 355 | 13 | 17 | 553 | 3 | 548 | 3.86e-83 | 271 |
| Msa0539720 | MtrunA17_Chr8g0362801 | 34.483 | 464 | 268 | 8 | 119 | 551 | 3 | 461 | 3.40e-81 | 262 |
| Msa0539720 | MtrunA17_Chr7g0261731 | 40.663 | 332 | 174 | 5 | 17 | 327 | 19 | 348 | 7.29e-81 | 257 |
| Msa0539720 | MtrunA17_Chr2g0331461 | 31.414 | 573 | 351 | 15 | 10 | 550 | 4 | 566 | 9.20e-80 | 263 |
| Msa0539720 | MtrunA17_Chr7g0240281 | 30.880 | 557 | 343 | 9 | 27 | 549 | 22 | 570 | 7.69e-77 | 254 |
| Msa0539720 | MtrunA17_Chr3g0112631 | 42.593 | 270 | 149 | 3 | 287 | 551 | 4 | 272 | 1.18e-74 | 239 |
| Msa0539720 | MtrunA17_Chr2g0326211 | 31.993 | 572 | 330 | 14 | 16 | 552 | 1 | 548 | 3.18e-74 | 246 |
| Msa0539720 | MtrunA17_Chr5g0415841 | 32.102 | 433 | 268 | 6 | 137 | 551 | 35 | 459 | 5.84e-73 | 240 |
| Msa0539720 | MtrunA17_Chr2g0325951 | 30.473 | 571 | 340 | 13 | 16 | 552 | 1 | 548 | 2.04e-71 | 238 |
| Msa0539720 | MtrunA17_Chr2g0325961 | 31.239 | 573 | 334 | 14 | 16 | 552 | 1 | 549 | 8.83e-71 | 237 |
| Msa0539720 | MtrunA17_Chr1g0177611 | 31.278 | 454 | 273 | 13 | 117 | 550 | 1 | 435 | 1.29e-67 | 225 |
| Msa0539720 | MtrunA17_Chr7g0235521 | 30.735 | 449 | 275 | 8 | 127 | 549 | 19 | 457 | 2.30e-65 | 220 |
| Msa0539720 | MtrunA17_Chr7g0240131 | 30.512 | 449 | 276 | 8 | 127 | 549 | 19 | 457 | 3.30e-64 | 217 |
| Msa0539720 | MtrunA17_Chr7g0240181 | 30.512 | 449 | 276 | 8 | 127 | 549 | 19 | 457 | 4.60e-64 | 217 |
| Msa0539720 | MtrunA17_Chr7g0240211 | 30.512 | 449 | 276 | 8 | 127 | 549 | 19 | 457 | 4.85e-64 | 217 |
| Msa0539720 | MtrunA17_Chr4g0014851 | 83.621 | 116 | 18 | 1 | 1 | 115 | 1 | 116 | 3.37e-63 | 204 |
| Msa0539720 | MtrunA17_Chr1g0177631 | 30.973 | 452 | 277 | 13 | 117 | 550 | 1 | 435 | 1.57e-61 | 209 |
| Msa0539720 | MtrunA17_Chr4g0060071 | 38.745 | 271 | 161 | 4 | 282 | 551 | 32 | 298 | 5.39e-59 | 198 |
| Msa0539720 | MtrunA17_Chr3g0142111 | 37.209 | 301 | 169 | 4 | 9 | 291 | 26 | 324 | 6.23e-59 | 199 |
| Msa0539720 | MtrunA17_Chr7g0240151 | 29.241 | 448 | 265 | 8 | 127 | 549 | 19 | 439 | 2.45e-58 | 201 |
| Msa0539720 | MtrunA17_Chr7g0234181 | 31.719 | 413 | 259 | 7 | 137 | 548 | 23 | 413 | 8.69e-56 | 193 |
| Msa0539720 | MtrunA17_Chr7g0234151 | 30.752 | 439 | 275 | 8 | 116 | 548 | 3 | 418 | 1.74e-54 | 190 |
| Msa0539720 | MtrunA17_Chr7g0234381 | 30.455 | 440 | 275 | 8 | 116 | 548 | 3 | 418 | 8.10e-54 | 188 |
| Msa0539720 | MtrunA17_Chr3g0142121 | 36.782 | 261 | 153 | 5 | 287 | 545 | 12 | 262 | 1.47e-52 | 181 |
| Msa0539720 | MtrunA17_Chr7g0261721 | 41.500 | 200 | 116 | 1 | 352 | 551 | 3 | 201 | 4.70e-50 | 172 |
| Msa0539720 | MtrunA17_Chr3g0112651 | 39.877 | 163 | 86 | 4 | 116 | 269 | 21 | 180 | 2.89e-31 | 120 |
| Msa0539720 | MtrunA17_Chr1g0166721 | 53.535 | 99 | 46 | 0 | 17 | 115 | 13 | 111 | 1.15e-29 | 114 |
| Msa0539720 | MtrunA17_Chr3g0112661 | 42.241 | 116 | 66 | 1 | 17 | 132 | 19 | 133 | 6.09e-28 | 108 |
| Msa0539720 | MtrunA17_Chr1g0147591 | 30.808 | 198 | 121 | 6 | 141 | 324 | 3 | 198 | 2.51e-25 | 103 |
| Msa0539720 | MtrunA17_Chr7g0261671 | 44.444 | 99 | 55 | 0 | 17 | 115 | 20 | 118 | 2.76e-25 | 100 |
| Msa0539720 | MtrunA17_Chr2g0326221 | 27.615 | 239 | 143 | 3 | 313 | 551 | 15 | 223 | 4.99e-22 | 95.1 |
| Msa0539720 | MtrunA17_Chr4g0060061 | 34.211 | 114 | 74 | 1 | 137 | 249 | 15 | 128 | 6.01e-19 | 83.2 |
| Msa0539720 | MtrunA17_Chr3g0082621 | 40.000 | 90 | 54 | 0 | 44 | 133 | 1 | 90 | 7.13e-18 | 79.0 |
| Msa0539720 | MtrunA17_Chr7g0261831 | 32.278 | 158 | 88 | 4 | 251 | 394 | 3 | 155 | 2.45e-17 | 81.3 |
| Msa0539720 | MtrunA17_Chr1g0147581 | 35.772 | 123 | 71 | 2 | 404 | 525 | 1 | 116 | 6.13e-17 | 77.0 |
| Msa0539720 | MtrunA17_Chr7g0240221 | 27.273 | 99 | 72 | 0 | 17 | 115 | 15 | 113 | 7.12e-14 | 68.6 |
| Msa0539720 | MtrunA17_Chr7g0240191 | 27.273 | 99 | 72 | 0 | 17 | 115 | 15 | 113 | 7.12e-14 | 68.6 |
| Msa0539720 | MtrunA17_Chr7g0240161 | 27.273 | 99 | 72 | 0 | 17 | 115 | 15 | 113 | 7.12e-14 | 68.6 |
| Msa0539720 | MtrunA17_Chr7g0240141 | 26.263 | 99 | 73 | 0 | 17 | 115 | 15 | 113 | 2.99e-13 | 66.6 |
| Msa0539720 | MtrunA17_Chr4g0060051 | 33.010 | 103 | 69 | 0 | 10 | 112 | 3 | 105 | 2.43e-12 | 64.3 |
| Msa0539720 | MtrunA17_Chr7g0261821 | 44.444 | 63 | 35 | 0 | 489 | 551 | 1 | 63 | 5.51e-12 | 61.2 |
| Msa0539720 | MtrunA17_Chr7g0235511 | 25.743 | 101 | 73 | 1 | 17 | 115 | 15 | 115 | 2.06e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539720 | AT1G22540.1 | 64.351 | 547 | 183 | 2 | 10 | 549 | 9 | 550 | 0.0 | 690 |
| Msa0539720 | AT1G72125.1 | 58.303 | 554 | 220 | 7 | 12 | 556 | 10 | 561 | 0.0 | 624 |
| Msa0539720 | AT1G72140.1 | 55.818 | 550 | 213 | 5 | 16 | 551 | 19 | 552 | 0.0 | 606 |
| Msa0539720 | AT1G72120.1 | 57.143 | 560 | 225 | 8 | 1 | 552 | 1 | 553 | 0.0 | 605 |
| Msa0539720 | AT1G22550.1 | 54.466 | 571 | 228 | 7 | 1 | 552 | 3 | 560 | 0.0 | 589 |
| Msa0539720 | AT1G22570.1 | 55.142 | 564 | 225 | 7 | 10 | 552 | 5 | 561 | 0.0 | 577 |
| Msa0539720 | AT1G22570.2 | 55.303 | 528 | 212 | 6 | 42 | 552 | 4 | 524 | 0.0 | 545 |
| Msa0539720 | AT1G72130.1 | 53.271 | 535 | 222 | 6 | 29 | 555 | 23 | 537 | 0.0 | 536 |
| Msa0539720 | AT3G54450.1 | 44.567 | 543 | 270 | 8 | 29 | 551 | 11 | 542 | 4.90e-168 | 488 |
| Msa0539720 | AT5G01180.2 | 40.000 | 560 | 310 | 7 | 17 | 554 | 11 | 566 | 2.26e-152 | 449 |
| Msa0539720 | AT5G01180.3 | 40.000 | 560 | 310 | 7 | 17 | 554 | 11 | 566 | 2.26e-152 | 449 |
| Msa0539720 | AT5G01180.1 | 40.000 | 560 | 310 | 7 | 17 | 554 | 11 | 566 | 2.26e-152 | 449 |
| Msa0539720 | AT3G54140.1 | 40.283 | 566 | 311 | 7 | 10 | 552 | 3 | 564 | 4.62e-152 | 448 |
| Msa0539720 | AT3G54140.2 | 40.283 | 566 | 311 | 7 | 10 | 552 | 3 | 564 | 4.62e-152 | 448 |
| Msa0539720 | AT2G02040.1 | 40.799 | 576 | 313 | 8 | 3 | 554 | 13 | 584 | 1.20e-151 | 447 |
| Msa0539720 | AT1G72130.2 | 52.681 | 429 | 176 | 5 | 133 | 554 | 10 | 418 | 3.67e-149 | 435 |
| Msa0539720 | AT1G72130.3 | 52.681 | 429 | 176 | 5 | 133 | 554 | 10 | 418 | 3.67e-149 | 435 |
| Msa0539720 | AT2G37900.1 | 40.845 | 568 | 292 | 11 | 10 | 551 | 17 | 566 | 3.81e-145 | 431 |
| Msa0539720 | AT1G62200.1 | 40.942 | 552 | 287 | 7 | 17 | 541 | 38 | 577 | 3.15e-144 | 429 |
| Msa0539720 | AT3G53960.1 | 39.310 | 580 | 313 | 10 | 3 | 551 | 2 | 573 | 5.31e-144 | 429 |
| Msa0539720 | AT2G02020.1 | 40.391 | 562 | 294 | 10 | 1 | 550 | 10 | 542 | 4.06e-138 | 412 |
| Msa0539720 | AT1G62200.3 | 39.415 | 581 | 284 | 10 | 17 | 541 | 52 | 620 | 5.29e-138 | 414 |
| Msa0539720 | AT1G62200.2 | 39.415 | 581 | 284 | 10 | 17 | 541 | 38 | 606 | 7.09e-138 | 414 |
| Msa0539720 | AT2G40460.1 | 38.998 | 559 | 316 | 7 | 11 | 551 | 4 | 555 | 1.52e-137 | 411 |
| Msa0539720 | AT5G46050.1 | 39.029 | 556 | 314 | 6 | 17 | 551 | 13 | 564 | 6.59e-135 | 405 |
| Msa0539720 | AT5G46040.1 | 38.879 | 535 | 304 | 5 | 17 | 531 | 13 | 544 | 6.95e-134 | 402 |
| Msa0539720 | AT2G37900.2 | 41.071 | 504 | 253 | 11 | 74 | 551 | 2 | 487 | 1.91e-125 | 377 |
| Msa0539720 | AT5G14940.1 | 39.227 | 543 | 298 | 11 | 29 | 548 | 5 | 538 | 1.05e-124 | 377 |
| Msa0539720 | AT2G02020.2 | 38.790 | 562 | 282 | 12 | 1 | 550 | 10 | 521 | 1.62e-123 | 374 |
| Msa0539720 | AT1G68570.1 | 38.007 | 542 | 301 | 7 | 40 | 551 | 32 | 568 | 3.25e-117 | 360 |
| Msa0539720 | AT1G68570.2 | 37.989 | 537 | 298 | 7 | 45 | 551 | 7 | 538 | 7.21e-117 | 358 |
| Msa0539720 | AT3G01350.1 | 37.385 | 543 | 306 | 9 | 33 | 546 | 9 | 546 | 2.61e-115 | 353 |
| Msa0539720 | AT1G69870.1 | 37.097 | 558 | 306 | 10 | 28 | 551 | 48 | 594 | 4.98e-115 | 355 |
| Msa0539720 | AT2G26690.1 | 38.698 | 553 | 307 | 8 | 16 | 545 | 9 | 552 | 2.24e-113 | 349 |
| Msa0539720 | AT1G12110.1 | 35.204 | 588 | 333 | 11 | 3 | 559 | 7 | 577 | 3.36e-111 | 344 |
| Msa0539720 | AT1G32450.1 | 33.975 | 571 | 340 | 8 | 10 | 548 | 16 | 581 | 7.43e-110 | 341 |
| Msa0539720 | AT4G21680.1 | 35.417 | 576 | 337 | 13 | 5 | 550 | 2 | 572 | 6.60e-107 | 333 |
| Msa0539720 | AT2G26690.2 | 38.023 | 526 | 294 | 8 | 43 | 545 | 3 | 519 | 3.11e-103 | 322 |
| Msa0539720 | AT3G21670.1 | 36.691 | 556 | 311 | 11 | 21 | 551 | 19 | 558 | 3.76e-100 | 315 |
| Msa0539720 | AT1G52190.1 | 33.456 | 544 | 320 | 10 | 40 | 548 | 30 | 566 | 5.14e-100 | 315 |
| Msa0539720 | AT1G69850.1 | 33.046 | 581 | 347 | 9 | 9 | 551 | 3 | 579 | 5.72e-100 | 315 |
| Msa0539720 | AT3G16180.1 | 34.347 | 559 | 323 | 12 | 25 | 548 | 16 | 565 | 6.44e-100 | 315 |
| Msa0539720 | AT5G46050.2 | 38.679 | 424 | 247 | 4 | 137 | 551 | 33 | 452 | 7.60e-100 | 310 |
| Msa0539720 | AT1G18880.1 | 34.539 | 553 | 329 | 11 | 35 | 558 | 23 | 571 | 1.05e-99 | 314 |
| Msa0539720 | AT2G26690.3 | 37.670 | 515 | 289 | 8 | 54 | 545 | 2 | 507 | 1.63e-98 | 309 |
| Msa0539720 | AT1G27040.1 | 32.509 | 566 | 354 | 8 | 6 | 550 | 2 | 560 | 3.46e-98 | 309 |
| Msa0539720 | AT1G27040.2 | 32.793 | 555 | 345 | 8 | 17 | 550 | 9 | 556 | 1.13e-97 | 308 |
| Msa0539720 | AT1G59740.1 | 34.151 | 571 | 339 | 10 | 3 | 546 | 12 | 572 | 3.61e-97 | 307 |
| Msa0539720 | AT5G62730.1 | 32.275 | 567 | 355 | 9 | 1 | 551 | 32 | 585 | 2.91e-96 | 305 |
| Msa0539720 | AT1G33440.1 | 34.921 | 567 | 331 | 10 | 7 | 548 | 14 | 567 | 4.83e-95 | 302 |
| Msa0539720 | AT5G62680.1 | 33.575 | 551 | 327 | 10 | 35 | 551 | 47 | 592 | 9.24e-95 | 302 |
| Msa0539720 | AT3G47960.1 | 33.333 | 549 | 329 | 11 | 35 | 551 | 65 | 608 | 2.60e-92 | 296 |
| Msa0539720 | AT1G27040.3 | 33.081 | 529 | 326 | 8 | 43 | 550 | 7 | 528 | 1.51e-91 | 291 |
| Msa0539720 | AT1G27080.1 | 32.855 | 557 | 330 | 11 | 29 | 556 | 12 | 553 | 4.26e-91 | 291 |
| Msa0539720 | AT5G62730.2 | 32.392 | 531 | 336 | 8 | 37 | 551 | 3 | 526 | 1.28e-90 | 288 |
| Msa0539720 | AT5G19640.1 | 31.694 | 549 | 316 | 13 | 32 | 548 | 60 | 581 | 2.18e-89 | 288 |
| Msa0539720 | AT5G13400.1 | 30.551 | 563 | 357 | 8 | 20 | 551 | 52 | 611 | 3.73e-87 | 282 |
| Msa0539720 | AT5G28470.2 | 31.239 | 557 | 342 | 13 | 28 | 554 | 14 | 559 | 3.94e-84 | 273 |
| Msa0539720 | AT1G27080.2 | 32.824 | 524 | 308 | 11 | 62 | 556 | 3 | 511 | 1.74e-83 | 270 |
| Msa0539720 | AT1G69860.1 | 32.605 | 549 | 323 | 11 | 35 | 554 | 22 | 552 | 1.78e-82 | 268 |
| Msa0539720 | AT5G28470.1 | 31.059 | 557 | 341 | 14 | 28 | 554 | 14 | 557 | 1.17e-81 | 266 |
| Msa0539720 | AT3G25260.1 | 33.818 | 550 | 315 | 14 | 12 | 548 | 2 | 515 | 3.03e-81 | 264 |
| Msa0539720 | AT3G25280.1 | 33.333 | 543 | 315 | 12 | 21 | 548 | 11 | 521 | 4.02e-80 | 261 |
| Msa0539720 | AT3G45680.1 | 31.533 | 574 | 333 | 14 | 11 | 555 | 2 | 544 | 4.88e-74 | 246 |
| Msa0539720 | AT3G45650.1 | 29.234 | 561 | 352 | 13 | 17 | 555 | 8 | 545 | 2.87e-72 | 241 |
| Msa0539720 | AT3G45710.1 | 30.866 | 554 | 322 | 13 | 31 | 552 | 21 | 545 | 2.90e-71 | 238 |
| Msa0539720 | AT3G45700.1 | 30.672 | 551 | 326 | 14 | 30 | 555 | 15 | 534 | 1.42e-70 | 236 |
| Msa0539720 | AT3G45660.1 | 30.268 | 522 | 311 | 12 | 58 | 552 | 48 | 543 | 1.77e-68 | 231 |
| Msa0539720 | AT3G45660.3 | 30.268 | 522 | 311 | 12 | 58 | 552 | 48 | 543 | 1.77e-68 | 231 |
| Msa0539720 | AT3G45660.2 | 30.268 | 522 | 311 | 12 | 58 | 552 | 69 | 564 | 2.65e-68 | 231 |
| Msa0539720 | AT3G45650.2 | 27.939 | 587 | 352 | 14 | 17 | 555 | 8 | 571 | 1.38e-66 | 227 |
| Msa0539720 | AT3G45720.1 | 30.220 | 546 | 320 | 13 | 40 | 555 | 28 | 542 | 3.08e-65 | 223 |
| Msa0539720 | AT5G11570.1 | 27.168 | 519 | 304 | 10 | 40 | 548 | 22 | 476 | 9.24e-63 | 214 |
| Msa0539720 | AT3G45690.1 | 29.720 | 535 | 291 | 15 | 30 | 540 | 17 | 490 | 1.76e-57 | 201 |
| Msa0539720 | AT2G38100.2 | 28.625 | 531 | 311 | 18 | 59 | 558 | 2 | 495 | 9.02e-50 | 179 |
| Msa0539720 | AT2G38100.1 | 28.868 | 530 | 311 | 17 | 59 | 558 | 18 | 511 | 2.58e-49 | 179 |
| Msa0539720 | AT2G38100.3 | 28.868 | 530 | 311 | 17 | 59 | 558 | 24 | 517 | 2.59e-49 | 179 |
Find 125 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTTGTGTTCAAGCTTTC+GGG | 0.147273 | 4_1:+20892249 | Msa0539720:CDS |
| TGGGCTACAACTTTGGTTTA+TGG | 0.163295 | 4_1:+20893946 | Msa0539720:CDS |
| TTCTAAGGTTGGTTCCAATT+TGG | 0.164932 | 4_1:+20893926 | Msa0539720:CDS |
| CTTCTAGCTCTGTGCTCTTT+AGG | 0.180783 | 4_1:-20892296 | None:intergenic |
| TGGTAATATCAAATAATATA+TGG | 0.185801 | 4_1:+20894722 | Msa0539720:three_prime_UTR |
| CTAGAAGCTCATTCTTTAAT+TGG | 0.206643 | 4_1:+20892312 | Msa0539720:CDS |
| GCTACAAGTTTCATCTTCTT+TGG | 0.207090 | 4_1:-20893875 | None:intergenic |
| GATAACATTAGTTGGGTTCT+TGG | 0.227701 | 4_1:+20892395 | Msa0539720:CDS |
| CCCATGCTTCTTAGTTCATT+TGG | 0.244157 | 4_1:-20894396 | None:intergenic |
| GCTTCTCTACTTCCTATCTT+TGG | 0.259450 | 4_1:+20891517 | Msa0539720:CDS |
| ATTAGTTGGGTTCTTGGATT+TGG | 0.259493 | 4_1:+20892401 | Msa0539720:CDS |
| TCTAAGGTTGGTTCCAATTT+GGG | 0.262407 | 4_1:+20893927 | Msa0539720:CDS |
| GAAAGACAACCATTTCAAAA+TGG | 0.266196 | 4_1:-20894794 | None:intergenic |
| TAGCTTATCAACAACGGATT+TGG | 0.272927 | 4_1:+20892568 | Msa0539720:CDS |
| GACATATAGGTTTAACATTA+AGG | 0.274752 | 4_1:+20892478 | Msa0539720:CDS |
| TTAGGTCCAAATCTGGTTAT+TGG | 0.277876 | 4_1:+20890677 | Msa0539720:CDS |
| AAACCTTGTGTTCAAGCTTT+CGG | 0.279638 | 4_1:+20892248 | Msa0539720:CDS |
| CTGCTGAGAATGTGAATATC+TGG | 0.284836 | 4_1:+20891485 | Msa0539720:CDS |
| TACACGACCAATTCTAATAA+AGG | 0.293012 | 4_1:-20892516 | None:intergenic |
| CCATGCTTCTTAGTTCATTT+GGG | 0.297304 | 4_1:-20894395 | None:intergenic |
| CTATACAATTTAACCTTAAT+CGG | 0.298042 | 4_1:-20894666 | None:intergenic |
| ACCAAAGTTGTAGCCCAAAT+TGG | 0.299132 | 4_1:-20893940 | None:intergenic |
| TCCAATTTGGGCTACAACTT+TGG | 0.299380 | 4_1:+20893939 | Msa0539720:CDS |
| AAGAGTCCCTTTATTAGAAT+TGG | 0.302187 | 4_1:+20892509 | Msa0539720:CDS |
| CTTTCTTTCTTTCTTTATGA+AGG | 0.307763 | 4_1:-20890462 | None:intergenic |
| GCATGCAAATGCTCTATATT+TGG | 0.310305 | 4_1:+20894754 | Msa0539720:three_prime_UTR |
| TTCACAATGCTTCAAAGAAT+TGG | 0.319658 | 4_1:+20894162 | Msa0539720:CDS |
| TGCTTCTCTTATCTATATCT+TGG | 0.321108 | 4_1:+20891588 | Msa0539720:CDS |
| ACAAGGATAGTCACCGATTA+AGG | 0.328728 | 4_1:+20894653 | Msa0539720:exon |
| ATGGAGAGAACAATATTTCC+TGG | 0.329908 | 4_1:+20894018 | Msa0539720:CDS |
| TTGCTGCAGCTATAAGAAAT+TGG | 0.340539 | 4_1:+20892540 | Msa0539720:CDS |
| GCTCAGTTAGCTCTTGTTGA+TGG | 0.342685 | 4_1:+20890625 | Msa0539720:CDS |
| CTTGCTGGATTAAGTGTGTT+GGG | 0.352086 | 4_1:+20894570 | Msa0539720:CDS |
| GCACTCTATTTGAGTATTGT+TGG | 0.352342 | 4_1:+20894423 | Msa0539720:CDS |
| TCATCTTCTTTGGATCCCTT+TGG | 0.353258 | 4_1:-20893865 | None:intergenic |
| GGTAATATCAAATAATATAT+GGG | 0.355240 | 4_1:+20894723 | Msa0539720:three_prime_UTR |
| AAAGAAGTGAATTATTCAAT+AGG | 0.359764 | 4_1:+20890564 | Msa0539720:five_prime_UTR |
| AGCTTCTAACAAAACTTCAT+TGG | 0.359790 | 4_1:-20890605 | None:intergenic |
| AAAGACAACCATTTCAAAAT+GGG | 0.361065 | 4_1:-20894793 | None:intergenic |
| GCAGAGAGGGTATCATATTA+TGG | 0.365676 | 4_1:+20891403 | Msa0539720:CDS |
| TGATCTCCAATAACCAGATT+TGG | 0.395184 | 4_1:-20890683 | None:intergenic |
| CTCATTGGAACAATTGCATT+AGG | 0.398098 | 4_1:-20894282 | None:intergenic |
| AGATCAGCTTGGTTTATCAT+AGG | 0.400187 | 4_1:+20890700 | Msa0539720:CDS |
| CAATTGTTCCAATGAGTATA+TGG | 0.401485 | 4_1:+20894289 | Msa0539720:CDS |
| CGTTATCTACGATCGCATAT+TGG | 0.401583 | 4_1:+20894101 | Msa0539720:CDS |
| GCAACAAAAGCACCAAAGAT+AGG | 0.404397 | 4_1:-20891529 | None:intergenic |
| TGAATTGTTCAGAACTTTGA+CGG | 0.417091 | 4_1:-20892616 | None:intergenic |
| TATTCAATAGGTTTGTTTGA+TGG | 0.423664 | 4_1:+20890576 | Msa0539720:exon |
| CCACTAGCAAGATCTATAAC+TGG | 0.427746 | 4_1:+20894126 | Msa0539720:CDS |
| CTCCATAGAACTCCCTTGCT+TGG | 0.430946 | 4_1:-20894001 | None:intergenic |
| ATTTGAGTATTGTTGGTGTT+GGG | 0.435093 | 4_1:+20894430 | Msa0539720:CDS |
| TGCTCGGAACAAGGACATAT+AGG | 0.436004 | 4_1:+20892465 | Msa0539720:CDS |
| AATAAGATTACTTGTGATTG+AGG | 0.440798 | 4_1:-20892182 | None:intergenic |
| ACACGACCAATTCTAATAAA+GGG | 0.444617 | 4_1:-20892515 | None:intergenic |
| TATTTGAGTATTGTTGGTGT+TGG | 0.455265 | 4_1:+20894429 | Msa0539720:CDS |
| CACCAAGCAAGGGAGTTCTA+TGG | 0.456626 | 4_1:+20893999 | Msa0539720:CDS |
| GCGTCTCTTCAAACGATAAA+CGG | 0.459809 | 4_1:+20894057 | Msa0539720:CDS |
| AAATAATATATGGGATTGAA+TGG | 0.460451 | 4_1:+20894732 | Msa0539720:three_prime_UTR |
| ACTTGCTGGATTAAGTGTGT+TGG | 0.466880 | 4_1:+20894569 | Msa0539720:CDS |
| TCTTTCTTTCTTTATGAAGG+TGG | 0.471398 | 4_1:-20890459 | None:intergenic |
| ATATACAAGATAACATTAGT+TGG | 0.471533 | 4_1:+20892387 | Msa0539720:CDS |
| CCTGCAGTTAGGTCCAAATC+TGG | 0.471649 | 4_1:+20890670 | Msa0539720:CDS |
| GAAGCTCATTCTTTAATTGG+TGG | 0.474451 | 4_1:+20892315 | Msa0539720:CDS |
| ACCAACCACCATATACTCAT+TGG | 0.479829 | 4_1:-20894297 | None:intergenic |
| TTTACATTCTTCACCAAGCA+AGG | 0.480785 | 4_1:+20893988 | Msa0539720:CDS |
| GTTGCAGTGCTCTGCTTGAG+TGG | 0.480805 | 4_1:-20891460 | None:intergenic |
| AAGAAGCTAAGGCTGTTCTA+AGG | 0.485876 | 4_1:+20893911 | Msa0539720:CDS |
| GCAAAGATGGTCATGAAACT+TGG | 0.486917 | 4_1:+20894499 | Msa0539720:CDS |
| GTATCATATTATGGAATTCA+AGG | 0.491184 | 4_1:+20891412 | Msa0539720:CDS |
| GGAGAGCAAAATGTGAGGGA+AGG | 0.492286 | 4_1:-20892161 | None:intergenic |
| TATACAAGATAACATTAGTT+GGG | 0.492477 | 4_1:+20892388 | Msa0539720:CDS |
| ACAAAGGACAGCCTGCAGTT+AGG | 0.506012 | 4_1:+20890659 | Msa0539720:CDS |
| TAGCTTCTTCCACCTCACTA+AGG | 0.507911 | 4_1:-20893897 | None:intergenic |
| AACTTGATATCATATCTGAC+AGG | 0.508029 | 4_1:+20891436 | Msa0539720:CDS |
| GAGAGCAAAATGTGAGGGAA+GGG | 0.508275 | 4_1:-20892160 | None:intergenic |
| CTGGTTATTGGAGATCAGCT+TGG | 0.508699 | 4_1:+20890689 | Msa0539720:CDS |
| AGCTAAGGCTGTTCTAAGGT+TGG | 0.516261 | 4_1:+20893915 | Msa0539720:CDS |
| GAGAATGTGAATATCTGGGC+TGG | 0.520799 | 4_1:+20891490 | Msa0539720:CDS |
| GCCCCGAAAGCTTGAACACA+AGG | 0.524049 | 4_1:-20892251 | None:intergenic |
| AGGTGTGGAAGTGGCAGAGA+GGG | 0.526707 | 4_1:+20891390 | Msa0539720:intron |
| TCCAATGAGTATATGGTGGT+TGG | 0.527139 | 4_1:+20894296 | Msa0539720:CDS |
| TCTATAACTGGAAAACCCTC+AGG | 0.538198 | 4_1:+20894138 | Msa0539720:CDS |
| TAGTGAGGTGGAAGAAGCTA+AGG | 0.539918 | 4_1:+20893900 | Msa0539720:CDS |
| TTGAGGAGAGCAAAATGTGA+GGG | 0.540178 | 4_1:-20892165 | None:intergenic |
| CCCAAATGAACTAAGAAGCA+TGG | 0.542573 | 4_1:+20894395 | Msa0539720:CDS |
| AAGGCATTGCTAACACCAAA+GGG | 0.547881 | 4_1:+20893850 | Msa0539720:CDS |
| TATCTAGTTGCCATCGGACA+AGG | 0.552486 | 4_1:+20892218 | Msa0539720:CDS |
| GCAGGAGGTATGTCAAATCC+AGG | 0.552568 | 4_1:-20894036 | None:intergenic |
| TGCTGAGAATGTGAATATCT+GGG | 0.554138 | 4_1:+20891486 | Msa0539720:CDS |
| ATGCTTCAAAGAATTGGCAC+TGG | 0.559271 | 4_1:+20894168 | Msa0539720:CDS |
| TGAAGCATTGTGAAACCTGA+GGG | 0.560105 | 4_1:-20894153 | None:intergenic |
| CCAGTTATAGATCTTGCTAG+TGG | 0.572059 | 4_1:-20894126 | None:intergenic |
| TTGCTGGATTAAGTGTGTTG+GGG | 0.578173 | 4_1:+20894571 | Msa0539720:CDS |
| CAAGGCATTGCTAACACCAA+AGG | 0.579415 | 4_1:+20893849 | Msa0539720:CDS |
| CCAAATGAACTAAGAAGCAT+GGG | 0.579849 | 4_1:+20894396 | Msa0539720:CDS |
| ACCTTGTGTTCAAGCTTTCG+GGG | 0.582205 | 4_1:+20892250 | Msa0539720:CDS |
| GGTGTTGGGAGCTTTCTAAG+TGG | 0.585532 | 4_1:+20894444 | Msa0539720:CDS |
| TATCATATTATGGAATTCAA+GGG | 0.587902 | 4_1:+20891413 | Msa0539720:CDS |
| TAATACTATTTACAGGGACT+AGG | 0.588075 | 4_1:+20892113 | Msa0539720:intron |
| AACTTGTAGCCTTAGTGAGG+TGG | 0.589145 | 4_1:+20893888 | Msa0539720:CDS |
| TTTATGTCCACCTTGTCCGA+TGG | 0.589781 | 4_1:-20892228 | None:intergenic |
| CATTGGTAGCTTCCTCAACA+AGG | 0.590057 | 4_1:+20893831 | Msa0539720:intron |
| TTACATTCTTCACCAAGCAA+GGG | 0.595454 | 4_1:+20893989 | Msa0539720:CDS |
| TTGAAGCATTGTGAAACCTG+AGG | 0.597571 | 4_1:-20894154 | None:intergenic |
| GCGAAATAGCTTATCAACAA+CGG | 0.599644 | 4_1:+20892562 | Msa0539720:CDS |
| TAGGTGTGGAAGTGGCAGAG+AGG | 0.601368 | 4_1:+20891389 | Msa0539720:intron |
| CCAGATTTGGACCTAACTGC+AGG | 0.604501 | 4_1:-20890670 | None:intergenic |
| GCGATGATCATTACAACACA+AGG | 0.605088 | 4_1:-20892428 | None:intergenic |
| TCACTCTATCTAGTTGCCAT+CGG | 0.608693 | 4_1:+20892212 | Msa0539720:CDS |
| CATAAAAGTGTCATCACACA+AGG | 0.610250 | 4_1:+20894636 | Msa0539720:CDS |
| ATTTGGAAGAAGAATGTGAT+GGG | 0.616831 | 4_1:+20892585 | Msa0539720:CDS |
| AAGACAACCATTTCAAAATG+GGG | 0.618818 | 4_1:-20894792 | None:intergenic |
| ATCGTTTGAAGAGACGCAGG+AGG | 0.651425 | 4_1:-20894051 | None:intergenic |
| TTTATCGTTTGAAGAGACGC+AGG | 0.652472 | 4_1:-20894054 | None:intergenic |
| TGAAACTTGTAGCCTTAGTG+AGG | 0.657268 | 4_1:+20893885 | Msa0539720:CDS |
| CTAGTTGCCATCGGACAAGG+TGG | 0.660681 | 4_1:+20892221 | Msa0539720:CDS |
| GATTTGGAAGAAGAATGTGA+TGG | 0.665948 | 4_1:+20892584 | Msa0539720:CDS |
| GATGGAGTCGTTGACTACAA+AGG | 0.676824 | 4_1:+20890643 | Msa0539720:CDS |
| CTAAAAGTAGCAGAAGACCA+TGG | 0.678652 | 4_1:+20894246 | Msa0539720:CDS |
| GTGTTAGCAATGCCTTGTTG+AGG | 0.678778 | 4_1:-20893843 | None:intergenic |
| CGATGATCATTACAACACAA+GGG | 0.690961 | 4_1:-20892427 | None:intergenic |
| ACTTGATATCATATCTGACA+GGG | 0.694680 | 4_1:+20891437 | Msa0539720:CDS |
| TAGGATCATCAACAAGACCA+TGG | 0.697431 | 4_1:-20894263 | None:intergenic |
| TTGTTCCAATGAGTATATGG+TGG | 0.707992 | 4_1:+20894292 | Msa0539720:CDS |
| ATTGAGGAGAGCAAAATGTG+AGG | 0.709462 | 4_1:-20892166 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTTTTTATCATTAATAA+AGG | + | chr4_1:20890905-20890924 | Msa0539720:intron | 10.0% |
| !! | CAATTAATTATTTATGTTAT+AGG | + | chr4_1:20892006-20892025 | Msa0539720:intron | 10.0% |
| !!! | TAGTTTTCTTTTTTAAATTA+CGG | + | chr4_1:20893338-20893357 | Msa0539720:intron | 10.0% |
| !!! | TTTTTATCATTAATAAAGGT+TGG | + | chr4_1:20890909-20890928 | Msa0539720:intron | 15.0% |
| !! | AAAGAGATATAAAATTGATT+TGG | - | chr4_1:20891074-20891093 | None:intergenic | 15.0% |
| !!! | ATGGACTAATTTTTTTTTTT+TGG | + | chr4_1:20891121-20891140 | Msa0539720:intron | 15.0% |
| !!! | ATAAGCTAATTAAAGTTTTT+TGG | + | chr4_1:20891877-20891896 | Msa0539720:intron | 15.0% |
| !!! | ATGTAGTTATTTCTTTTAAA+TGG | + | chr4_1:20893154-20893173 | Msa0539720:intron | 15.0% |
| !!! | TTTGAAAAAACATTTTACAT+TGG | + | chr4_1:20893441-20893460 | Msa0539720:intron | 15.0% |
| !!! | CTTTCAATGTTTTAATTTAT+TGG | - | chr4_1:20893777-20893796 | None:intergenic | 15.0% |
| !! | ATTAAAACATTGAAAGATTA+TGG | + | chr4_1:20893781-20893800 | Msa0539720:intron | 15.0% |
| !!! | TTTAAAAATATCGTGTATTT+TGG | + | chr4_1:20894702-20894721 | Msa0539720:intron | 15.0% |
| !! | TGGTAATATCAAATAATATA+TGG | + | chr4_1:20894722-20894741 | Msa0539720:three_prime_UTR | 15.0% |
| !! | GGTAATATCAAATAATATAT+GGG | + | chr4_1:20894723-20894742 | Msa0539720:three_prime_UTR | 15.0% |
| !! | AAAGAAGTGAATTATTCAAT+AGG | + | chr4_1:20890564-20890583 | Msa0539720:five_prime_UTR | 20.0% |
| !! | CTCTATTATATTGACAATAA+AGG | + | chr4_1:20890738-20890757 | Msa0539720:intron | 20.0% |
| !! | ATTATATTGACAATAAAGGT+TGG | + | chr4_1:20890742-20890761 | Msa0539720:intron | 20.0% |
| !! | ACAAAAAGTTTAATTGAGTT+GGG | - | chr4_1:20890847-20890866 | None:intergenic | 20.0% |
| !! | AACAAAAAGTTTAATTGAGT+TGG | - | chr4_1:20890848-20890867 | None:intergenic | 20.0% |
| !!! | GGAATAATAGAGTTTTTTTT+TGG | - | chr4_1:20891028-20891047 | None:intergenic | 20.0% |
| !!! | GAATTATGAATGTTTTGTTT+AGG | + | chr4_1:20891370-20891389 | Msa0539720:intron | 20.0% |
| !! | TATCATATTATGGAATTCAA+GGG | + | chr4_1:20891413-20891432 | Msa0539720:CDS | 20.0% |
| !! | ATATACAAGATAACATTAGT+TGG | + | chr4_1:20892387-20892406 | Msa0539720:CDS | 20.0% |
| !! | TATACAAGATAACATTAGTT+GGG | + | chr4_1:20892388-20892407 | Msa0539720:CDS | 20.0% |
| !! | AAAAGAAACACTTAAAGATT+TGG | - | chr4_1:20892986-20893005 | None:intergenic | 20.0% |
| !! | AACAAAATAGAAGAAGTTTA+GGG | - | chr4_1:20893534-20893553 | None:intergenic | 20.0% |
| !! | TGTTATGATCACTATATAAA+AGG | - | chr4_1:20893721-20893740 | None:intergenic | 20.0% |
| !!! | TCTTTGATAGAAAATTTTAG+TGG | + | chr4_1:20894477-20894496 | Msa0539720:CDS | 20.0% |
| !! | CTATACAATTTAACCTTAAT+CGG | - | chr4_1:20894669-20894688 | None:intergenic | 20.0% |
| !! | AAATAATATATGGGATTGAA+TGG | + | chr4_1:20894732-20894751 | Msa0539720:three_prime_UTR | 20.0% |
| ! | CTTTCTTTCTTTCTTTATGA+AGG | - | chr4_1:20890465-20890484 | None:intergenic | 25.0% |
| !! | TATTCAATAGGTTTGTTTGA+TGG | + | chr4_1:20890576-20890595 | Msa0539720:exon | 25.0% |
| ! | ACTATTTGAACCTTGAAATT+TGG | + | chr4_1:20890813-20890832 | Msa0539720:intron | 25.0% |
| ! | TAAAATAGTTTAGCTAGGTT+GGG | - | chr4_1:20891005-20891024 | None:intergenic | 25.0% |
| ! | TTTGGTAAAATAGTTTAGCT+AGG | - | chr4_1:20891010-20891029 | None:intergenic | 25.0% |
| !!! | GAGATATAAAATTGATTTGG+TGG | - | chr4_1:20891071-20891090 | None:intergenic | 25.0% |
| ! | AACATTGCATAATATATGCA+GGG | - | chr4_1:20891221-20891240 | None:intergenic | 25.0% |
| ! | AAACATTGCATAATATATGC+AGG | - | chr4_1:20891222-20891241 | None:intergenic | 25.0% |
| ! | GTATCATATTATGGAATTCA+AGG | + | chr4_1:20891412-20891431 | Msa0539720:CDS | 25.0% |
| !! | GTTTGTCTCTTCAATTTTTA+TGG | + | chr4_1:20891647-20891666 | Msa0539720:intron | 25.0% |
| ! | TATTTATGTTATAGGGTCTT+TGG | + | chr4_1:20892014-20892033 | Msa0539720:intron | 25.0% |
| !! | ATTGGCTTAATACTATTTAC+AGG | + | chr4_1:20892106-20892125 | Msa0539720:intron | 25.0% |
| ! | TTGGCTTAATACTATTTACA+GGG | + | chr4_1:20892107-20892126 | Msa0539720:intron | 25.0% |
| ! | AATAAGATTACTTGTGATTG+AGG | - | chr4_1:20892185-20892204 | None:intergenic | 25.0% |
| ! | GACATATAGGTTTAACATTA+AGG | + | chr4_1:20892478-20892497 | Msa0539720:CDS | 25.0% |
| ! | GTTCTTATCCATATAATCAA+TGG | + | chr4_1:20892915-20892934 | Msa0539720:intron | 25.0% |
| !! | GATCAAATCCATTGATTATA+TGG | - | chr4_1:20892926-20892945 | None:intergenic | 25.0% |
| ! | TGGATTTGATCTAAATTACT+TGG | + | chr4_1:20892935-20892954 | Msa0539720:intron | 25.0% |
| !! | ATCTTTAAGTGTTTCTTTTG+TGG | + | chr4_1:20892987-20893006 | Msa0539720:intron | 25.0% |
| ! | AATAACAATAGTGTGTTTAG+AGG | - | chr4_1:20893213-20893232 | None:intergenic | 25.0% |
| ! | CAACAAAATAGAAGAAGTTT+AGG | - | chr4_1:20893535-20893554 | None:intergenic | 25.0% |
| ! | CAACAATTATCGTACATTAA+TGG | + | chr4_1:20893591-20893610 | Msa0539720:intron | 25.0% |
| ! | TGAGAGAAAGATTGATTATT+TGG | + | chr4_1:20893652-20893671 | Msa0539720:intron | 25.0% |
| !! | AATTTGATAACAATGAGTGT+TGG | + | chr4_1:20893692-20893711 | Msa0539720:intron | 25.0% |
| !! | TTATTGGAATTAGTTTGAGT+TGG | - | chr4_1:20893761-20893780 | None:intergenic | 25.0% |
| !! | TAGTCTTTTAATCTCAACAA+AGG | - | chr4_1:20894229-20894248 | None:intergenic | 25.0% |
| !! | GTTTTGTGACAATATCAATA+AGG | + | chr4_1:20894521-20894540 | Msa0539720:CDS | 25.0% |
| !!! | CACATCTTGATTACTTTTAT+TGG | + | chr4_1:20894544-20894563 | Msa0539720:CDS | 25.0% |
| ! | AAAGACAACCATTTCAAAAT+GGG | - | chr4_1:20894796-20894815 | None:intergenic | 25.0% |
| !! | ATACTTTTACCTACGAAAAA+AGG | + | chr4_1:20894817-20894836 | Msa0539720:three_prime_UTR | 25.0% |
| !!! | AATAAATGTCCTTTTTTCGT+AGG | - | chr4_1:20894829-20894848 | None:intergenic | 25.0% |
| ! | GAAAAAAGGACATTTATTGA+CGG | + | chr4_1:20894831-20894850 | Msa0539720:three_prime_UTR | 25.0% |
| TCTTTCTTTCTTTATGAAGG+TGG | - | chr4_1:20890462-20890481 | None:intergenic | 30.0% | |
| AGCTTCTAACAAAACTTCAT+TGG | - | chr4_1:20890608-20890627 | None:intergenic | 30.0% | |
| !! | GGTTTTATGACCAAATTTCA+AGG | - | chr4_1:20890826-20890845 | None:intergenic | 30.0% |
| AAACAAAACAGCAGATTTCA+AGG | - | chr4_1:20890892-20890911 | None:intergenic | 30.0% | |
| GTAAAATAGTTTAGCTAGGT+TGG | - | chr4_1:20891006-20891025 | None:intergenic | 30.0% | |
| !! | ATAAAATTGATTTGGTGGCT+GGG | - | chr4_1:20891066-20891085 | None:intergenic | 30.0% |
| !! | TATAAAATTGATTTGGTGGC+TGG | - | chr4_1:20891067-20891086 | None:intergenic | 30.0% |
| ! | GAACTCACACATTTTAAATG+TGG | + | chr4_1:20891163-20891182 | Msa0539720:intron | 30.0% |
| ! | ACATTTTAAATGTGGAGAAG+TGG | + | chr4_1:20891171-20891190 | Msa0539720:intron | 30.0% |
| ! | CATTTTAAATGTGGAGAAGT+GGG | + | chr4_1:20891172-20891191 | Msa0539720:intron | 30.0% |
| ! | ATTTTAAATGTGGAGAAGTG+GGG | + | chr4_1:20891173-20891192 | Msa0539720:intron | 30.0% |
| ! | ATAAATTTTACCAGTGTGTC+AGG | - | chr4_1:20891307-20891326 | None:intergenic | 30.0% |
| !!! | ATGAATGTTTTGTTTAGGTG+TGG | + | chr4_1:20891375-20891394 | Msa0539720:intron | 30.0% |
| AACTTGATATCATATCTGAC+AGG | + | chr4_1:20891436-20891455 | Msa0539720:CDS | 30.0% | |
| ACTTGATATCATATCTGACA+GGG | + | chr4_1:20891437-20891456 | Msa0539720:CDS | 30.0% | |
| !!! | TTTGTTGCTGATTCTTTTCT+TGG | + | chr4_1:20891544-20891563 | Msa0539720:CDS | 30.0% |
| TGCTTCTCTTATCTATATCT+TGG | + | chr4_1:20891588-20891607 | Msa0539720:CDS | 30.0% | |
| !! | CACTTGCTTTTACGTATTTT+AGG | + | chr4_1:20891625-20891644 | Msa0539720:intron | 30.0% |
| ! | TAGCTTCTTAACACACATTT+TGG | + | chr4_1:20891694-20891713 | Msa0539720:intron | 30.0% |
| AGATTAGCAAAAACCATGAA+AGG | - | chr4_1:20891937-20891956 | None:intergenic | 30.0% | |
| TAATACTATTTACAGGGACT+AGG | + | chr4_1:20892113-20892132 | Msa0539720:intron | 30.0% | |
| CTAGAAGCTCATTCTTTAAT+TGG | + | chr4_1:20892312-20892331 | Msa0539720:CDS | 30.0% | |
| ! | TGGTATTTTACTATGATTGC+AGG | + | chr4_1:20892335-20892354 | Msa0539720:CDS | 30.0% |
| !!! | GCTTTGATTGTTTTTTTGCT+CGG | + | chr4_1:20892449-20892468 | Msa0539720:CDS | 30.0% |
| AAGAGTCCCTTTATTAGAAT+TGG | + | chr4_1:20892509-20892528 | Msa0539720:CDS | 30.0% | |
| ACACGACCAATTCTAATAAA+GGG | - | chr4_1:20892518-20892537 | None:intergenic | 30.0% | |
| TACACGACCAATTCTAATAA+AGG | - | chr4_1:20892519-20892538 | None:intergenic | 30.0% | |
| ATTTGGAAGAAGAATGTGAT+GGG | + | chr4_1:20892585-20892604 | Msa0539720:CDS | 30.0% | |
| TGAATTGTTCAGAACTTTGA+CGG | - | chr4_1:20892619-20892638 | None:intergenic | 30.0% | |
| TTCCACAAGGATAAAATCAT+TGG | + | chr4_1:20892893-20892912 | Msa0539720:intron | 30.0% | |
| ! | AACCAATGATTTTATCCTTG+TGG | - | chr4_1:20892898-20892917 | None:intergenic | 30.0% |
| ! | TTTAAGTGTTTCTTTTGTGG+TGG | + | chr4_1:20892990-20893009 | Msa0539720:intron | 30.0% |
| TGCATAATATTTGCAATGTC+CGG | - | chr4_1:20893030-20893049 | None:intergenic | 30.0% | |
| TTCAGAGAAGAATAAAGACT+AGG | - | chr4_1:20893120-20893139 | None:intergenic | 30.0% | |
| ! | ACTCCCTTCTTATTTAATCA+CGG | + | chr4_1:20893257-20893276 | Msa0539720:intron | 30.0% |
| TTCACAATGCTTCAAAGAAT+TGG | + | chr4_1:20894162-20894181 | Msa0539720:CDS | 30.0% | |
| CAATTGTTCCAATGAGTATA+TGG | + | chr4_1:20894289-20894308 | Msa0539720:CDS | 30.0% | |
| !! | GTTCCTCAATACTTTTTGTT+TGG | + | chr4_1:20894318-20894337 | Msa0539720:CDS | 30.0% |
| !! | ACACCAAACAAAAAGTATTG+AGG | - | chr4_1:20894324-20894343 | None:intergenic | 30.0% |
| !!! | TGTTTCTGAGGTTTTTACAA+TGG | + | chr4_1:20894341-20894360 | Msa0539720:CDS | 30.0% |
| ! | TATTTGAGTATTGTTGGTGT+TGG | + | chr4_1:20894429-20894448 | Msa0539720:CDS | 30.0% |
| ! | ATTTGAGTATTGTTGGTGTT+GGG | + | chr4_1:20894430-20894449 | Msa0539720:CDS | 30.0% |
| !! | GAAAATTTTAGTGGCAAAGA+TGG | + | chr4_1:20894486-20894505 | Msa0539720:CDS | 30.0% |
| !! | TACTTTTATTGGTTACTTGC+TGG | + | chr4_1:20894555-20894574 | Msa0539720:CDS | 30.0% |
| !! | TGTATAACCCCATTTTGAAA+TGG | + | chr4_1:20894785-20894804 | Msa0539720:three_prime_UTR | 30.0% |
| AAGACAACCATTTCAAAATG+GGG | - | chr4_1:20894795-20894814 | None:intergenic | 30.0% | |
| GAAAGACAACCATTTCAAAA+TGG | - | chr4_1:20894797-20894816 | None:intergenic | 30.0% | |
| TTAGGTCCAAATCTGGTTAT+TGG | + | chr4_1:20890677-20890696 | Msa0539720:CDS | 35.0% | |
| TGATCTCCAATAACCAGATT+TGG | - | chr4_1:20890686-20890705 | None:intergenic | 35.0% | |
| AGATCAGCTTGGTTTATCAT+AGG | + | chr4_1:20890700-20890719 | Msa0539720:CDS | 35.0% | |
| !! | AGGTTGGTTTCAAAAAGAGT+TGG | + | chr4_1:20890925-20890944 | Msa0539720:intron | 35.0% |
| ! | CTCTTAGAACCTTGTAGTTT+TGG | + | chr4_1:20890954-20890973 | Msa0539720:intron | 35.0% |
| ACAGTCAAACCAAAACTACA+AGG | - | chr4_1:20890966-20890985 | None:intergenic | 35.0% | |
| CATAATATATGCAGGGTATG+GGG | - | chr4_1:20891214-20891233 | None:intergenic | 35.0% | |
| GCATAATATATGCAGGGTAT+GGG | - | chr4_1:20891215-20891234 | None:intergenic | 35.0% | |
| TGCATAATATATGCAGGGTA+TGG | - | chr4_1:20891216-20891235 | None:intergenic | 35.0% | |
| TGCTGAGAATGTGAATATCT+GGG | + | chr4_1:20891486-20891505 | Msa0539720:CDS | 35.0% | |
| GACGATGATGAATATGATGA+TGG | - | chr4_1:20891735-20891754 | None:intergenic | 35.0% | |
| GATCTTGTGCTAAGAGAATA+CGG | - | chr4_1:20891773-20891792 | None:intergenic | 35.0% | |
| AAACAGGGTCATCGAATAAA+GGG | - | chr4_1:20891808-20891827 | None:intergenic | 35.0% | |
| ACCCTGTTTGGTAAAAATAG+CGG | + | chr4_1:20891819-20891838 | Msa0539720:intron | 35.0% | |
| !!! | TCCGCTATTTTTACCAAACA+GGG | - | chr4_1:20891823-20891842 | None:intergenic | 35.0% |
| !!! | ATCCGCTATTTTTACCAAAC+AGG | - | chr4_1:20891824-20891843 | None:intergenic | 35.0% |
| TAGAATATGTAGGCTCAGTT+TGG | - | chr4_1:20891908-20891927 | None:intergenic | 35.0% | |
| AAGGCAGTGTTAGAATATGT+AGG | - | chr4_1:20891918-20891937 | None:intergenic | 35.0% | |
| TATTCTAACACTGCCTTTCA+TGG | + | chr4_1:20891921-20891940 | Msa0539720:intron | 35.0% | |
| TATGTTATAGGGTCTTTGGA+CGG | + | chr4_1:20892018-20892037 | Msa0539720:intron | 35.0% | |
| GAATAGACAGATAGCTATGT+CGG | + | chr4_1:20892063-20892082 | Msa0539720:intron | 35.0% | |
| !!! | CATGTTTTGATGTTGGTCAT+TGG | + | chr4_1:20892088-20892107 | Msa0539720:intron | 35.0% |
| AAACCTTGTGTTCAAGCTTT+CGG | + | chr4_1:20892248-20892267 | Msa0539720:CDS | 35.0% | |
| GAAGCTCATTCTTTAATTGG+TGG | + | chr4_1:20892315-20892334 | Msa0539720:CDS | 35.0% | |
| GATAACATTAGTTGGGTTCT+TGG | + | chr4_1:20892395-20892414 | Msa0539720:CDS | 35.0% | |
| ATTAGTTGGGTTCTTGGATT+TGG | + | chr4_1:20892401-20892420 | Msa0539720:CDS | 35.0% | |
| CGATGATCATTACAACACAA+GGG | - | chr4_1:20892430-20892449 | None:intergenic | 35.0% | |
| !!! | TTGTTTTTTTGCTCGGAACA+AGG | + | chr4_1:20892456-20892475 | Msa0539720:CDS | 35.0% |
| TTGCTGCAGCTATAAGAAAT+TGG | + | chr4_1:20892540-20892559 | Msa0539720:CDS | 35.0% | |
| GCGAAATAGCTTATCAACAA+CGG | + | chr4_1:20892562-20892581 | Msa0539720:CDS | 35.0% | |
| ! | TAGCTTATCAACAACGGATT+TGG | + | chr4_1:20892568-20892587 | Msa0539720:CDS | 35.0% |
| GATTTGGAAGAAGAATGTGA+TGG | + | chr4_1:20892584-20892603 | Msa0539720:CDS | 35.0% | |
| ACAAGCTCAAGATTCTATCA+TGG | - | chr4_1:20892864-20892883 | None:intergenic | 35.0% | |
| TTGTGATACTACATTCCACA+AGG | + | chr4_1:20892880-20892899 | Msa0539720:intron | 35.0% | |
| CATAATATTTGCAATGTCCG+GGG | - | chr4_1:20893028-20893047 | None:intergenic | 35.0% | |
| GCATAATATTTGCAATGTCC+GGG | - | chr4_1:20893029-20893048 | None:intergenic | 35.0% | |
| AAGAAGGGAGTTGAATTATC+TGG | - | chr4_1:20893248-20893267 | None:intergenic | 35.0% | |
| CCACCGTGATTAAATAAGAA+GGG | - | chr4_1:20893263-20893282 | None:intergenic | 35.0% | |
| ACCACCGTGATTAAATAAGA+AGG | - | chr4_1:20893264-20893283 | None:intergenic | 35.0% | |
| TAATCACGGTGGTTACTTAA+AGG | + | chr4_1:20893271-20893290 | Msa0539720:intron | 35.0% | |
| ! | TGGTTACTTAAAGGTGTGTT+TGG | + | chr4_1:20893280-20893299 | Msa0539720:intron | 35.0% |
| ! | TACTTAAAGGTGTGTTTGGA+TGG | + | chr4_1:20893284-20893303 | Msa0539720:intron | 35.0% |
| !!! | TGTTTTTGGATTGAGGGTTT+AGG | - | chr4_1:20893511-20893530 | None:intergenic | 35.0% |
| !!! | TTAGGGTGTTTTTGGATTGA+GGG | - | chr4_1:20893517-20893536 | None:intergenic | 35.0% |
| !!! | TTTAGGGTGTTTTTGGATTG+AGG | - | chr4_1:20893518-20893537 | None:intergenic | 35.0% |
| !! | GAAGAAGTTTAGGGTGTTTT+TGG | - | chr4_1:20893525-20893544 | None:intergenic | 35.0% |
| GTACATTAATGGTTCATGCT+AGG | + | chr4_1:20893602-20893621 | Msa0539720:intron | 35.0% | |
| !! | TTAGCTTGTAACTTCTGCAT+TGG | + | chr4_1:20893814-20893833 | Msa0539720:intron | 35.0% |
| GCTACAAGTTTCATCTTCTT+TGG | - | chr4_1:20893878-20893897 | None:intergenic | 35.0% | |
| !! | TTCTAAGGTTGGTTCCAATT+TGG | + | chr4_1:20893926-20893945 | Msa0539720:CDS | 35.0% |
| ! | TCTAAGGTTGGTTCCAATTT+GGG | + | chr4_1:20893927-20893946 | Msa0539720:CDS | 35.0% |
| TTTACATTCTTCACCAAGCA+AGG | + | chr4_1:20893988-20894007 | Msa0539720:CDS | 35.0% | |
| TTACATTCTTCACCAAGCAA+GGG | + | chr4_1:20893989-20894008 | Msa0539720:CDS | 35.0% | |
| ATGGAGAGAACAATATTTCC+TGG | + | chr4_1:20894018-20894037 | Msa0539720:CDS | 35.0% | |
| CTCATTGGAACAATTGCATT+AGG | - | chr4_1:20894285-20894304 | None:intergenic | 35.0% | |
| TTGTTCCAATGAGTATATGG+TGG | + | chr4_1:20894292-20894311 | Msa0539720:CDS | 35.0% | |
| !!! | CTTTTTGTTTGGTGTTTCTG+AGG | + | chr4_1:20894329-20894348 | Msa0539720:CDS | 35.0% |
| !! | TCTGAGGTTTTTACAATGGT+TGG | + | chr4_1:20894345-20894364 | Msa0539720:CDS | 35.0% |
| !!! | TTTTACAATGGTTGGTCTTC+AGG | + | chr4_1:20894353-20894372 | Msa0539720:CDS | 35.0% |
| CCATGCTTCTTAGTTCATTT+GGG | - | chr4_1:20894398-20894417 | None:intergenic | 35.0% | |
| ! | CCAAATGAACTAAGAAGCAT+GGG | + | chr4_1:20894396-20894415 | Msa0539720:CDS | 35.0% |
| ! | GCACTCTATTTGAGTATTGT+TGG | + | chr4_1:20894423-20894442 | Msa0539720:CDS | 35.0% |
| !! | CATAAAAGTGTCATCACACA+AGG | + | chr4_1:20894636-20894655 | Msa0539720:CDS | 35.0% |
| GCATGCAAATGCTCTATATT+TGG | + | chr4_1:20894754-20894773 | Msa0539720:three_prime_UTR | 35.0% | |
| !! | AGTTTAGCTAGGTTGGGTTT+TGG | - | chr4_1:20890999-20891018 | None:intergenic | 40.0% |
| !!! | GTTTTGTTTAGGTGTGGAAG+TGG | + | chr4_1:20891381-20891400 | Msa0539720:intron | 40.0% |
| !! | GCAGAGAGGGTATCATATTA+TGG | + | chr4_1:20891403-20891422 | Msa0539720:CDS | 40.0% |
| CTGCTGAGAATGTGAATATC+TGG | + | chr4_1:20891485-20891504 | Msa0539720:CDS | 40.0% | |
| GCTTCTCTACTTCCTATCTT+TGG | + | chr4_1:20891517-20891536 | Msa0539720:CDS | 40.0% | |
| !! | GCAACAAAAGCACCAAAGAT+AGG | - | chr4_1:20891532-20891551 | None:intergenic | 40.0% |
| CAAACAGGGTCATCGAATAA+AGG | - | chr4_1:20891809-20891828 | None:intergenic | 40.0% | |
| CTTTATTCGATGACCCTGTT+TGG | + | chr4_1:20891807-20891826 | Msa0539720:intron | 40.0% | |
| AGCTGATAGCTTATAGCTGA+TGG | + | chr4_1:20891844-20891863 | Msa0539720:intron | 40.0% | |
| TTGAGGAGAGCAAAATGTGA+GGG | - | chr4_1:20892168-20892187 | None:intergenic | 40.0% | |
| ATTGAGGAGAGCAAAATGTG+AGG | - | chr4_1:20892169-20892188 | None:intergenic | 40.0% | |
| TCACTCTATCTAGTTGCCAT+CGG | + | chr4_1:20892212-20892231 | Msa0539720:CDS | 40.0% | |
| AACCTTGTGTTCAAGCTTTC+GGG | + | chr4_1:20892249-20892268 | Msa0539720:CDS | 40.0% | |
| GCGATGATCATTACAACACA+AGG | - | chr4_1:20892431-20892450 | None:intergenic | 40.0% | |
| GCTCAAGATTCTATCATGGT+GGG | - | chr4_1:20892860-20892879 | None:intergenic | 40.0% | |
| AGCTCAAGATTCTATCATGG+TGG | - | chr4_1:20892861-20892880 | None:intergenic | 40.0% | |
| ! | TGAGTTTAGCTCAGTTGGTA+TGG | - | chr4_1:20893057-20893076 | None:intergenic | 40.0% |
| ! | CCCTTCTTATTTAATCACGG+TGG | + | chr4_1:20893260-20893279 | Msa0539720:intron | 40.0% |
| ! | TTAAAGGTGTGTTTGGATGG+AGG | + | chr4_1:20893287-20893306 | Msa0539720:intron | 40.0% |
| ! | TAAAGGTGTGTTTGGATGGA+GGG | + | chr4_1:20893288-20893307 | Msa0539720:intron | 40.0% |
| TTTGGATTGAGGGTTTAGGA+GGG | - | chr4_1:20893507-20893526 | None:intergenic | 40.0% | |
| ! | TTTTGGATTGAGGGTTTAGG+AGG | - | chr4_1:20893508-20893527 | None:intergenic | 40.0% |
| !! | AAGGCATTGCTAACACCAAA+GGG | + | chr4_1:20893850-20893869 | Msa0539720:CDS | 40.0% |
| TCATCTTCTTTGGATCCCTT+TGG | - | chr4_1:20893868-20893887 | None:intergenic | 40.0% | |
| ! | TGAAACTTGTAGCCTTAGTG+AGG | + | chr4_1:20893885-20893904 | Msa0539720:CDS | 40.0% |
| AAGAAGCTAAGGCTGTTCTA+AGG | + | chr4_1:20893911-20893930 | Msa0539720:CDS | 40.0% | |
| TCCAATTTGGGCTACAACTT+TGG | + | chr4_1:20893939-20893958 | Msa0539720:CDS | 40.0% | |
| ACCAAAGTTGTAGCCCAAAT+TGG | - | chr4_1:20893943-20893962 | None:intergenic | 40.0% | |
| ! | TGGGCTACAACTTTGGTTTA+TGG | + | chr4_1:20893946-20893965 | Msa0539720:CDS | 40.0% |
| TTTATCGTTTGAAGAGACGC+AGG | - | chr4_1:20894057-20894076 | None:intergenic | 40.0% | |
| GCGTCTCTTCAAACGATAAA+CGG | + | chr4_1:20894057-20894076 | Msa0539720:CDS | 40.0% | |
| CGTTATCTACGATCGCATAT+TGG | + | chr4_1:20894101-20894120 | Msa0539720:CDS | 40.0% | |
| CCAGTTATAGATCTTGCTAG+TGG | - | chr4_1:20894129-20894148 | None:intergenic | 40.0% | |
| CCACTAGCAAGATCTATAAC+TGG | + | chr4_1:20894126-20894145 | Msa0539720:CDS | 40.0% | |
| TCTATAACTGGAAAACCCTC+AGG | + | chr4_1:20894138-20894157 | Msa0539720:CDS | 40.0% | |
| !! | TGAAGCATTGTGAAACCTGA+GGG | - | chr4_1:20894156-20894175 | None:intergenic | 40.0% |
| !! | TTGAAGCATTGTGAAACCTG+AGG | - | chr4_1:20894157-20894176 | None:intergenic | 40.0% |
| ATGCTTCAAAGAATTGGCAC+TGG | + | chr4_1:20894168-20894187 | Msa0539720:CDS | 40.0% | |
| CTAAAAGTAGCAGAAGACCA+TGG | + | chr4_1:20894246-20894265 | Msa0539720:CDS | 40.0% | |
| TAGGATCATCAACAAGACCA+TGG | - | chr4_1:20894266-20894285 | None:intergenic | 40.0% | |
| TCCAATGAGTATATGGTGGT+TGG | + | chr4_1:20894296-20894315 | Msa0539720:CDS | 40.0% | |
| ACCAACCACCATATACTCAT+TGG | - | chr4_1:20894300-20894319 | None:intergenic | 40.0% | |
| CCCAAATGAACTAAGAAGCA+TGG | + | chr4_1:20894395-20894414 | Msa0539720:CDS | 40.0% | |
| CCCATGCTTCTTAGTTCATT+TGG | - | chr4_1:20894399-20894418 | None:intergenic | 40.0% | |
| GCAAAGATGGTCATGAAACT+TGG | + | chr4_1:20894499-20894518 | Msa0539720:CDS | 40.0% | |
| ! | ACTTGCTGGATTAAGTGTGT+TGG | + | chr4_1:20894569-20894588 | Msa0539720:CDS | 40.0% |
| CTTGCTGGATTAAGTGTGTT+GGG | + | chr4_1:20894570-20894589 | Msa0539720:CDS | 40.0% | |
| TTGCTGGATTAAGTGTGTTG+GGG | + | chr4_1:20894571-20894590 | Msa0539720:CDS | 40.0% | |
| ! | ACAAGGATAGTCACCGATTA+AGG | + | chr4_1:20894653-20894672 | Msa0539720:exon | 40.0% |
| ! | GCTCAGTTAGCTCTTGTTGA+TGG | + | chr4_1:20890625-20890644 | Msa0539720:CDS | 45.0% |
| ! | GATGGAGTCGTTGACTACAA+AGG | + | chr4_1:20890643-20890662 | Msa0539720:CDS | 45.0% |
| CTGGTTATTGGAGATCAGCT+TGG | + | chr4_1:20890689-20890708 | Msa0539720:CDS | 45.0% | |
| !! | AGGTTGGTTTGACAAAGAGC+TGG | + | chr4_1:20890758-20890777 | Msa0539720:intron | 45.0% |
| GCTGGGATGAGAAAAGGTTA+AGG | - | chr4_1:20891049-20891068 | None:intergenic | 45.0% | |
| !! | TTTTTGGTCAAGCAGCCTAG+TGG | + | chr4_1:20891137-20891156 | Msa0539720:intron | 45.0% |
| CTCTGTGAGCTTAGTTCAGT+TGG | - | chr4_1:20891246-20891265 | None:intergenic | 45.0% | |
| TAAACCAACTCCTGACACAC+TGG | + | chr4_1:20891294-20891313 | Msa0539720:intron | 45.0% | |
| TTTACCAGTGTGTCAGGAGT+TGG | - | chr4_1:20891301-20891320 | None:intergenic | 45.0% | |
| GAGAATGTGAATATCTGGGC+TGG | + | chr4_1:20891490-20891509 | Msa0539720:CDS | 45.0% | |
| TATGTAGGCTCAGTTTGGCA+AGG | - | chr4_1:20891903-20891922 | None:intergenic | 45.0% | |
| !!! | GTCGGCTCATGTTTTGATGT+TGG | + | chr4_1:20892081-20892100 | Msa0539720:intron | 45.0% |
| GAGAGCAAAATGTGAGGGAA+GGG | - | chr4_1:20892163-20892182 | None:intergenic | 45.0% | |
| TATCTAGTTGCCATCGGACA+AGG | + | chr4_1:20892218-20892237 | Msa0539720:CDS | 45.0% | |
| TTTATGTCCACCTTGTCCGA+TGG | - | chr4_1:20892231-20892250 | None:intergenic | 45.0% | |
| ACCTTGTGTTCAAGCTTTCG+GGG | + | chr4_1:20892250-20892269 | Msa0539720:CDS | 45.0% | |
| !! | CTTCTAGCTCTGTGCTCTTT+AGG | - | chr4_1:20892299-20892318 | None:intergenic | 45.0% |
| TGCTCGGAACAAGGACATAT+AGG | + | chr4_1:20892465-20892484 | Msa0539720:CDS | 45.0% | |
| ! | AGTGTTTCTTTTGTGGTGGC+CGG | + | chr4_1:20892994-20893013 | Msa0539720:intron | 45.0% |
| TGTGTTTGGATGGAGGGTTT+AGG | + | chr4_1:20893294-20893313 | Msa0539720:intron | 45.0% | |
| TTGGATTGAGGGTTTAGGAG+GGG | - | chr4_1:20893506-20893525 | None:intergenic | 45.0% | |
| ! | CATTGGTAGCTTCCTCAACA+AGG | + | chr4_1:20893831-20893850 | Msa0539720:intron | 45.0% |
| ! | GTGTTAGCAATGCCTTGTTG+AGG | - | chr4_1:20893846-20893865 | None:intergenic | 45.0% |
| !! | CAAGGCATTGCTAACACCAA+AGG | + | chr4_1:20893849-20893868 | Msa0539720:CDS | 45.0% |
| ! | AACTTGTAGCCTTAGTGAGG+TGG | + | chr4_1:20893888-20893907 | Msa0539720:CDS | 45.0% |
| TAGCTTCTTCCACCTCACTA+AGG | - | chr4_1:20893900-20893919 | None:intergenic | 45.0% | |
| TAGTGAGGTGGAAGAAGCTA+AGG | + | chr4_1:20893900-20893919 | Msa0539720:CDS | 45.0% | |
| !! | AGCTAAGGCTGTTCTAAGGT+TGG | + | chr4_1:20893915-20893934 | Msa0539720:CDS | 45.0% |
| !! | ATTATAAAAATGAATTAATT+TGG | - | chr4_1:20891103-20891122 | None:intergenic | 5.0% |
| !!! | AAATTAATTCATTTTTATAA+TGG | + | chr4_1:20891102-20891121 | Msa0539720:intron | 5.0% |
| !!! | TTACTTTTTTTTTTTTTAAA+TGG | + | chr4_1:20891331-20891350 | Msa0539720:intron | 5.0% |
| !! | AATTAATTATTTATGTTATA+GGG | + | chr4_1:20892007-20892026 | Msa0539720:intron | 5.0% |
| ACAAAGGACAGCCTGCAGTT+AGG | + | chr4_1:20890659-20890678 | Msa0539720:CDS | 50.0% | |
| CCAGATTTGGACCTAACTGC+AGG | - | chr4_1:20890673-20890692 | None:intergenic | 50.0% | |
| CCTGCAGTTAGGTCCAAATC+TGG | + | chr4_1:20890670-20890689 | Msa0539720:CDS | 50.0% | |
| ! | TTGGTGGCTGGGATGAGAAA+AGG | - | chr4_1:20891055-20891074 | None:intergenic | 50.0% |
| ATGTGTGAGTTCCAGCCACT+AGG | - | chr4_1:20891155-20891174 | None:intergenic | 50.0% | |
| GGAGAGCAAAATGTGAGGGA+AGG | - | chr4_1:20892164-20892183 | None:intergenic | 50.0% | |
| ! | GTGTTTCTTTTGTGGTGGCC+GGG | + | chr4_1:20892995-20893014 | Msa0539720:intron | 50.0% |
| ! | TGTTTCTTTTGTGGTGGCCG+GGG | + | chr4_1:20892996-20893015 | Msa0539720:intron | 50.0% |
| ! | CCTCGTGAGTTTAGCTCAGT+TGG | - | chr4_1:20893062-20893081 | None:intergenic | 50.0% |
| CCAACTGAGCTAAACTCACG+AGG | + | chr4_1:20893059-20893078 | Msa0539720:intron | 50.0% | |
| TTGGATGGAGGGTTTAGGAG+AGG | + | chr4_1:20893299-20893318 | Msa0539720:intron | 50.0% | |
| ATGGAGGGTTTAGGAGAGGA+AGG | + | chr4_1:20893303-20893322 | Msa0539720:intron | 50.0% | |
| TGGAGGGTTTAGGAGAGGAA+GGG | + | chr4_1:20893304-20893323 | Msa0539720:intron | 50.0% | |
| TTGAGGGTTTAGGAGGGGAA+TGG | - | chr4_1:20893501-20893520 | None:intergenic | 50.0% | |
| CACCAAGCAAGGGAGTTCTA+TGG | + | chr4_1:20893999-20894018 | Msa0539720:CDS | 50.0% | |
| CTCCATAGAACTCCCTTGCT+TGG | - | chr4_1:20894004-20894023 | None:intergenic | 50.0% | |
| ! | GCAGGAGGTATGTCAAATCC+AGG | - | chr4_1:20894039-20894058 | None:intergenic | 50.0% |
| ATCGTTTGAAGAGACGCAGG+AGG | - | chr4_1:20894054-20894073 | None:intergenic | 50.0% | |
| ! | GGTGTTGGGAGCTTTCTAAG+TGG | + | chr4_1:20894444-20894463 | Msa0539720:CDS | 50.0% |
| ! | ATGTGGAGAAGTGGGGTGTC+TGG | + | chr4_1:20891180-20891199 | Msa0539720:intron | 55.0% |
| ! | TGTGGAGAAGTGGGGTGTCT+GGG | + | chr4_1:20891181-20891200 | Msa0539720:intron | 55.0% |
| TAGGTGTGGAAGTGGCAGAG+AGG | + | chr4_1:20891389-20891408 | Msa0539720:intron | 55.0% | |
| AGGTGTGGAAGTGGCAGAGA+GGG | + | chr4_1:20891390-20891409 | Msa0539720:intron | 55.0% | |
| GTTGCAGTGCTCTGCTTGAG+TGG | - | chr4_1:20891463-20891482 | None:intergenic | 55.0% | |
| CTAGTTGCCATCGGACAAGG+TGG | + | chr4_1:20892221-20892240 | Msa0539720:CDS | 55.0% | |
| GCCCCGAAAGCTTGAACACA+AGG | - | chr4_1:20892254-20892273 | None:intergenic | 55.0% | |
| AGGGTTTAGGAGAGGAAGGG+AGG | + | chr4_1:20893307-20893326 | Msa0539720:intron | 55.0% | |
| GGGTTTAGGAGAGGAAGGGA+GGG | + | chr4_1:20893308-20893327 | Msa0539720:intron | 55.0% | |
| GGTTTAGGAGAGGAAGGGAG+GGG | + | chr4_1:20893309-20893328 | Msa0539720:intron | 55.0% | |
| GGTTTAGGAGGGGAATGGAG+GGG | - | chr4_1:20893496-20893515 | None:intergenic | 55.0% | |
| GGGTTTAGGAGGGGAATGGA+GGG | - | chr4_1:20893497-20893516 | None:intergenic | 55.0% | |
| AGGGTTTAGGAGGGGAATGG+AGG | - | chr4_1:20893498-20893517 | None:intergenic | 55.0% | |
| TGGTCAAGCAGCCTAGTGGC+TGG | + | chr4_1:20891141-20891160 | Msa0539720:intron | 60.0% | |
| ! | GTGGAGAAGTGGGGTGTCTG+GGG | + | chr4_1:20891182-20891201 | Msa0539720:intron | 60.0% |
| AATGTCCGGGGTTCGAACCC+CGG | - | chr4_1:20893016-20893035 | None:intergenic | 60.0% | |
| TTAGGAGGGGAATGGAGGGG+AGG | - | chr4_1:20893493-20893512 | None:intergenic | 60.0% | |
| GGTGGCCGGGGTTCGAACCC+CGG | + | chr4_1:20893008-20893027 | Msa0539720:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 20890456 | 20894855 | 20890456 | ID=Msa0539720;Name=Msa0539720 |
| chr4_1 | mRNA | 20890456 | 20894855 | 20890456 | ID=Msa0539720-mRNA-1;Parent=Msa0539720;Name=Msa0539720-mRNA-1;_AED=0.08;_eAED=0.08;_QI=139|1|1|1|0.75|0.6|5|164|559 |
| chr4_1 | exon | 20890456 | 20890721 | 20890456 | ID=Msa0539720-mRNA-1:exon:5977;Parent=Msa0539720-mRNA-1 |
| chr4_1 | exon | 20891392 | 20891609 | 20891392 | ID=Msa0539720-mRNA-1:exon:5978;Parent=Msa0539720-mRNA-1 |
| chr4_1 | exon | 20892128 | 20892639 | 20892128 | ID=Msa0539720-mRNA-1:exon:5979;Parent=Msa0539720-mRNA-1 |
| chr4_1 | exon | 20893840 | 20894687 | 20893840 | ID=Msa0539720-mRNA-1:exon:5980;Parent=Msa0539720-mRNA-1 |
| chr4_1 | exon | 20894717 | 20894855 | 20894717 | ID=Msa0539720-mRNA-1:exon:5981;Parent=Msa0539720-mRNA-1 |
| chr4_1 | five_prime_UTR | 20890456 | 20890594 | 20890456 | ID=Msa0539720-mRNA-1:five_prime_utr;Parent=Msa0539720-mRNA-1 |
| chr4_1 | CDS | 20890595 | 20890721 | 20890595 | ID=Msa0539720-mRNA-1:cds;Parent=Msa0539720-mRNA-1 |
| chr4_1 | CDS | 20891392 | 20891609 | 20891392 | ID=Msa0539720-mRNA-1:cds;Parent=Msa0539720-mRNA-1 |
| chr4_1 | CDS | 20892128 | 20892639 | 20892128 | ID=Msa0539720-mRNA-1:cds;Parent=Msa0539720-mRNA-1 |
| chr4_1 | CDS | 20893840 | 20894662 | 20893840 | ID=Msa0539720-mRNA-1:cds;Parent=Msa0539720-mRNA-1 |
| chr4_1 | three_prime_UTR | 20894663 | 20894687 | 20894663 | ID=Msa0539720-mRNA-1:three_prime_utr;Parent=Msa0539720-mRNA-1 |
| chr4_1 | three_prime_UTR | 20894717 | 20894855 | 20894717 | ID=Msa0539720-mRNA-1:three_prime_utr;Parent=Msa0539720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
