Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546850 | XP_003606353.1 | 93.529 | 340 | 21 | 1 | 1 | 339 | 1 | 340 | 0.0 | 623 |
| Msa0546850 | XP_003606353.1 | 93.750 | 64 | 3 | 1 | 335 | 397 | 540 | 603 | 7.57e-28 | 127 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546850 | sp|O64825|LYK4_ARATH | 29.258 | 229 | 152 | 8 | 16 | 238 | 9 | 233 | 4.19e-23 | 104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546850 | G7JNC0 | 93.529 | 340 | 21 | 1 | 1 | 339 | 1 | 340 | 0.0 | 623 |
| Msa0546850 | G7JNC0 | 93.750 | 64 | 3 | 1 | 335 | 397 | 540 | 603 | 3.61e-28 | 127 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0546850 | Msa0582410 | 0.883346 | 4.851039e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546850 | MtrunA17_Chr4g0028801 | 93.529 | 340 | 21 | 1 | 1 | 339 | 1 | 340 | 0.0 | 623 |
| Msa0546850 | MtrunA17_Chr4g0028801 | 93.750 | 64 | 3 | 1 | 335 | 397 | 540 | 603 | 6.96e-32 | 127 |
| Msa0546850 | MtrunA17_Chr4g0028761 | 91.729 | 133 | 11 | 0 | 1 | 133 | 1 | 133 | 2.19e-83 | 251 |
| Msa0546850 | MtrunA17_Chr5g0403381 | 36.239 | 218 | 127 | 8 | 29 | 240 | 28 | 239 | 2.17e-27 | 114 |
| Msa0546850 | MtrunA17_Chr1g0154511 | 29.730 | 259 | 166 | 10 | 10 | 258 | 2 | 254 | 4.83e-23 | 101 |
| Msa0546850 | MtrunA17_Chr7g0248904 | 27.468 | 233 | 157 | 7 | 14 | 239 | 23 | 250 | 8.77e-20 | 91.7 |
| Msa0546850 | MtrunA17_Chr5g0439334 | 31.481 | 216 | 140 | 5 | 29 | 240 | 23 | 234 | 1.83e-17 | 84.3 |
| Msa0546850 | MtrunA17_Chr3g0119351 | 28.017 | 232 | 159 | 6 | 29 | 257 | 48 | 274 | 1.03e-15 | 79.0 |
| Msa0546850 | MtrunA17_Chr8g0373711 | 30.732 | 205 | 125 | 10 | 46 | 240 | 26 | 223 | 2.89e-15 | 77.4 |
| Msa0546850 | MtrunA17_Chr7g0248881 | 24.898 | 245 | 172 | 6 | 6 | 242 | 1 | 241 | 5.04e-15 | 77.0 |
| Msa0546850 | MtrunA17_Chr5g0403371 | 25.794 | 252 | 161 | 10 | 57 | 303 | 46 | 276 | 4.08e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546850 | AT2G23770.1 | 29.258 | 229 | 152 | 8 | 16 | 238 | 9 | 233 | 4.26e-24 | 104 |
| Msa0546850 | AT2G33580.1 | 26.423 | 246 | 160 | 8 | 14 | 247 | 11 | 247 | 1.16e-12 | 70.1 |
Find 57 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGAATAATCCTTCAAATT+TGG | 0.109353 | 4_1:+39295806 | None:intergenic |
| TGAAGAACATCACCAAATTT+TGG | 0.193751 | 4_1:+39296995 | None:intergenic |
| GGTTGAGTTTGTTGGATTAA+AGG | 0.199574 | 4_1:+39296550 | None:intergenic |
| CAACAAACTCAACCACTTTA+TGG | 0.208880 | 4_1:-39296541 | Msa0546850:CDS |
| GGACCATTTGAATCTCTTAT+TGG | 0.212065 | 4_1:+39296770 | None:intergenic |
| GGATTTGTTGGAAGAAAATT+AGG | 0.225775 | 4_1:+39296707 | None:intergenic |
| TATCTCACTTGATGATTTCT+TGG | 0.248654 | 4_1:-39296849 | Msa0546850:CDS |
| GATATATTGAGTAAGAAATT+TGG | 0.252816 | 4_1:-39296872 | Msa0546850:CDS |
| CAAGGTAATGAACCAAAATT+TGG | 0.255977 | 4_1:-39297007 | Msa0546850:CDS |
| TGTGTTGATTCTTGTGTAAA+TGG | 0.278179 | 4_1:+39296686 | None:intergenic |
| TATATTGCAGGACCTGTTAT+AGG | 0.285313 | 4_1:-39296650 | Msa0546850:CDS |
| TGAGTTTGGCTTGGTAAAAT+TGG | 0.286613 | 4_1:+39297131 | None:intergenic |
| GTGAATAATCCTTCAAATTT+GGG | 0.295265 | 4_1:+39295807 | None:intergenic |
| GAAGTTGTAGAGGTTCTTAT+TGG | 0.300824 | 4_1:+39296515 | None:intergenic |
| ACAAAGTCATGATTCATCTT+TGG | 0.305448 | 4_1:-39297450 | Msa0546850:CDS |
| AAGAACTTTGTAGCTGAGTT+TGG | 0.310131 | 4_1:+39297117 | None:intergenic |
| TTTGAAGGATTATTCACTTC+CGG | 0.354863 | 4_1:-39295801 | Msa0546850:CDS |
| TGACACATGCAAAACATTCT+TGG | 0.355561 | 4_1:-39297314 | Msa0546850:CDS |
| CCATCAAATTTGTATATTGC+AGG | 0.370900 | 4_1:-39296662 | Msa0546850:CDS |
| TTAGAACATGCACATTCAAT+AGG | 0.395559 | 4_1:+39297154 | None:intergenic |
| AACAATACAAAACCTATAAC+AGG | 0.398331 | 4_1:+39296638 | None:intergenic |
| GGAGGCGGCGAAGGAGAATC+TGG | 0.400781 | 4_1:+39296728 | None:intergenic |
| TTGATTCCAACAAGAAAATC+AGG | 0.402588 | 4_1:+39296482 | None:intergenic |
| CCTGCAATATACAAATTTGA+TGG | 0.412524 | 4_1:+39296662 | None:intergenic |
| CATAAAGTGGTTGAGTTTGT+TGG | 0.414042 | 4_1:+39296542 | None:intergenic |
| AAATTATCTCCTTGTATAAG+AGG | 0.426063 | 4_1:+39296896 | None:intergenic |
| TCTTGTGTAAATGGATTTGT+TGG | 0.464502 | 4_1:+39296695 | None:intergenic |
| CTCACTTGATGATTTCTTGG+AGG | 0.475261 | 4_1:-39296846 | Msa0546850:CDS |
| CTTTGTAGCTGAGTTTGGCT+TGG | 0.493453 | 4_1:+39297122 | None:intergenic |
| ATGAAACATCACCAGGTTCA+AGG | 0.500802 | 4_1:-39297357 | Msa0546850:CDS |
| TTCATTACATTGGTTGCAAG+TGG | 0.502752 | 4_1:-39296617 | Msa0546850:CDS |
| GTTTGGGAAGGTAGCGAAGG+TGG | 0.505854 | 4_1:-39295863 | Msa0546850:intron |
| TTTGGACATGAACATCTAAG+AGG | 0.509272 | 4_1:+39296968 | None:intergenic |
| ATTGTCAAATATTGCTTGTG+AGG | 0.512870 | 4_1:-39297080 | Msa0546850:CDS |
| ATTCCAATAAGAGATTCAAA+TGG | 0.526234 | 4_1:-39296773 | Msa0546850:CDS |
| TATTCAAATGAAACATCACC+AGG | 0.534191 | 4_1:-39297364 | Msa0546850:CDS |
| GTTACATACCCTCTTATACA+AGG | 0.542990 | 4_1:-39296905 | Msa0546850:CDS |
| TCCACAGTTGGCCTATGCAA+TGG | 0.547103 | 4_1:+39295731 | None:intergenic |
| AAACACAAACAAAGAGCCTC+CGG | 0.562359 | 4_1:+39295782 | None:intergenic |
| TAACAATTAGAATTGTCGTA+AGG | 0.565979 | 4_1:+39297385 | None:intergenic |
| TCTTATTGGTGACCATAAAG+TGG | 0.570815 | 4_1:+39296529 | None:intergenic |
| TGGGAAGGTAGCGAAGGTGG+TGG | 0.570831 | 4_1:-39295860 | Msa0546850:intron |
| AGAAAATTAGGAGGCGGCGA+AGG | 0.575534 | 4_1:+39296719 | None:intergenic |
| GGAATTAAAACAACTGTCTG+AGG | 0.581866 | 4_1:+39296791 | None:intergenic |
| AGATAAGCATGAAGTTGTAG+AGG | 0.582426 | 4_1:+39296505 | None:intergenic |
| AATTATCTCCTTGTATAAGA+GGG | 0.590188 | 4_1:+39296897 | None:intergenic |
| TTTGTTGGAAGAAAATTAGG+AGG | 0.590849 | 4_1:+39296710 | None:intergenic |
| GTTGGAAGAAAATTAGGAGG+CGG | 0.595539 | 4_1:+39296713 | None:intergenic |
| AATTACTCTAGTATCATGAA+AGG | 0.607508 | 4_1:-39296944 | Msa0546850:CDS |
| TTCATGATATCATCCACAGT+TGG | 0.608179 | 4_1:+39295719 | None:intergenic |
| AACTGTGGATGATATCATGA+AGG | 0.617121 | 4_1:-39295717 | Msa0546850:CDS |
| TTGCAAGTGTACCTTGAACC+TGG | 0.636420 | 4_1:+39297346 | None:intergenic |
| TCTTCTCAAATACTCAAACA+AGG | 0.637830 | 4_1:-39297193 | Msa0546850:CDS |
| GAAGGATTATTCACTTCCGG+AGG | 0.662386 | 4_1:-39295798 | Msa0546850:CDS |
| TCCATTGCATAGGCCAACTG+TGG | 0.681918 | 4_1:-39295732 | Msa0546850:CDS |
| TGAAAGATGATCCATTGCAT+AGG | 0.685411 | 4_1:-39295742 | Msa0546850:CDS |
| GTATTTGAGAAGAAGATGTG+AGG | 0.691273 | 4_1:+39297203 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATATTGTGAATTTAAT+TGG | - | chr4_1:39296894-39296913 | Msa0546850:CDS | 10.0% |
| !! | ATTAATATTGTGAATTTAAT+TGG | - | chr4_1:39296894-39296913 | Msa0546850:CDS | 10.0% |
| !!! | ATGATACTAGAGTAATTTTT+TGG | + | chr4_1:39296228-39296247 | None:intergenic | 20.0% |
| !! | GATATATTGAGTAAGAAATT+TGG | - | chr4_1:39296303-39296322 | Msa0546850:intron | 20.0% |
| !!! | TTTTGTATTGTTCATTACAT+TGG | - | chr4_1:39296548-39296567 | Msa0546850:CDS | 20.0% |
| !!! | AATTTAATTGGTGTTTGTTA+TGG | - | chr4_1:39296906-39296925 | Msa0546850:CDS | 20.0% |
| !! | ATATATTTGTAACCGAAAAT+TGG | - | chr4_1:39297128-39297147 | Msa0546850:CDS | 20.0% |
| !!! | ATGATACTAGAGTAATTTTT+TGG | + | chr4_1:39296228-39296247 | None:intergenic | 20.0% |
| !! | GATATATTGAGTAAGAAATT+TGG | - | chr4_1:39296303-39296322 | Msa0546850:intron | 20.0% |
| !!! | TTTTGTATTGTTCATTACAT+TGG | - | chr4_1:39296548-39296567 | Msa0546850:CDS | 20.0% |
| !!! | AATTTAATTGGTGTTTGTTA+TGG | - | chr4_1:39296906-39296925 | Msa0546850:CDS | 20.0% |
| !! | ATATATTTGTAACCGAAAAT+TGG | - | chr4_1:39297128-39297147 | Msa0546850:CDS | 20.0% |
| ! | TAACAATTAGAATTGTCGTA+AGG | + | chr4_1:39295793-39295812 | None:intergenic | 25.0% |
| !!! | TTGAGATTTTTGAAATGGTT+TGG | + | chr4_1:39295909-39295928 | None:intergenic | 25.0% |
| !!! | ACCTTGATTTTTGTTTTGAT+CGG | + | chr4_1:39296154-39296173 | None:intergenic | 25.0% |
| ! | AATTACTCTAGTATCATGAA+AGG | - | chr4_1:39296231-39296250 | Msa0546850:intron | 25.0% |
| ! | AATTATCTCCTTGTATAAGA+GGG | + | chr4_1:39296281-39296300 | None:intergenic | 25.0% |
| ! | AAATTATCTCCTTGTATAAG+AGG | + | chr4_1:39296282-39296301 | None:intergenic | 25.0% |
| ! | TGAGGAAAAATTGATGAAAA+GGG | + | chr4_1:39296369-39296388 | None:intergenic | 25.0% |
| ! | ATTCCAATAAGAGATTCAAA+TGG | - | chr4_1:39296402-39296421 | Msa0546850:intron | 25.0% |
| !!! | GGAATGTCAAATATTTTGAT+TGG | + | chr4_1:39296429-39296448 | None:intergenic | 25.0% |
| ! | AACAATACAAAACCTATAAC+AGG | + | chr4_1:39296540-39296559 | None:intergenic | 25.0% |
| !!! | ATTGGTGATTTTGTTTACAA+GGG | - | chr4_1:39296784-39296803 | Msa0546850:CDS | 25.0% |
| !!! | AGTTTTTGAGTTACCTAAAA+CGG | - | chr4_1:39296959-39296978 | Msa0546850:CDS | 25.0% |
| ! | ATCCATGCAATACTTTAAAT+TGG | - | chr4_1:39297005-39297024 | Msa0546850:CDS | 25.0% |
| ! | ATACTTTAAATTGGCATAGA+AGG | - | chr4_1:39297014-39297033 | Msa0546850:CDS | 25.0% |
| !! | TATCTAACAATCTTTTGCAT+GGG | - | chr4_1:39297179-39297198 | Msa0546850:CDS | 25.0% |
| !!! | AAGGTTGATATTTTTGCATT+TGG | - | chr4_1:39297214-39297233 | Msa0546850:CDS | 25.0% |
| ! | AAATTGGTTAAAGATTGTGT+TGG | - | chr4_1:39297283-39297302 | Msa0546850:CDS | 25.0% |
| !!! | ATTGTGTTGGATTTTTGTTT+GGG | - | chr4_1:39297296-39297315 | Msa0546850:CDS | 25.0% |
| ! | GTGAATAATCCTTCAAATTT+GGG | + | chr4_1:39297371-39297390 | None:intergenic | 25.0% |
| ! | AGTGAATAATCCTTCAAATT+TGG | + | chr4_1:39297372-39297391 | None:intergenic | 25.0% |
| !!! | TTGTTTGTGTTTTTTAGCTA+AGG | - | chr4_1:39297404-39297423 | Msa0546850:CDS | 25.0% |
| ! | TAACAATTAGAATTGTCGTA+AGG | + | chr4_1:39295793-39295812 | None:intergenic | 25.0% |
| !!! | TTGAGATTTTTGAAATGGTT+TGG | + | chr4_1:39295909-39295928 | None:intergenic | 25.0% |
| !!! | ACCTTGATTTTTGTTTTGAT+CGG | + | chr4_1:39296154-39296173 | None:intergenic | 25.0% |
| ! | AATTACTCTAGTATCATGAA+AGG | - | chr4_1:39296231-39296250 | Msa0546850:intron | 25.0% |
| ! | AATTATCTCCTTGTATAAGA+GGG | + | chr4_1:39296281-39296300 | None:intergenic | 25.0% |
| ! | AAATTATCTCCTTGTATAAG+AGG | + | chr4_1:39296282-39296301 | None:intergenic | 25.0% |
| ! | TGAGGAAAAATTGATGAAAA+GGG | + | chr4_1:39296369-39296388 | None:intergenic | 25.0% |
| ! | ATTCCAATAAGAGATTCAAA+TGG | - | chr4_1:39296402-39296421 | Msa0546850:intron | 25.0% |
| !!! | GGAATGTCAAATATTTTGAT+TGG | + | chr4_1:39296429-39296448 | None:intergenic | 25.0% |
| ! | AACAATACAAAACCTATAAC+AGG | + | chr4_1:39296540-39296559 | None:intergenic | 25.0% |
| !!! | ATTGGTGATTTTGTTTACAA+GGG | - | chr4_1:39296784-39296803 | Msa0546850:CDS | 25.0% |
| !!! | AGTTTTTGAGTTACCTAAAA+CGG | - | chr4_1:39296959-39296978 | Msa0546850:CDS | 25.0% |
| ! | ATCCATGCAATACTTTAAAT+TGG | - | chr4_1:39297005-39297024 | Msa0546850:CDS | 25.0% |
| ! | ATACTTTAAATTGGCATAGA+AGG | - | chr4_1:39297014-39297033 | Msa0546850:CDS | 25.0% |
| !! | TATCTAACAATCTTTTGCAT+GGG | - | chr4_1:39297179-39297198 | Msa0546850:CDS | 25.0% |
| !!! | AAGGTTGATATTTTTGCATT+TGG | - | chr4_1:39297214-39297233 | Msa0546850:CDS | 25.0% |
| ! | AAATTGGTTAAAGATTGTGT+TGG | - | chr4_1:39297283-39297302 | Msa0546850:CDS | 25.0% |
| !!! | ATTGTGTTGGATTTTTGTTT+GGG | - | chr4_1:39297296-39297315 | Msa0546850:CDS | 25.0% |
| ! | GTGAATAATCCTTCAAATTT+GGG | + | chr4_1:39297371-39297390 | None:intergenic | 25.0% |
| ! | AGTGAATAATCCTTCAAATT+TGG | + | chr4_1:39297372-39297391 | None:intergenic | 25.0% |
| !!! | TTGTTTGTGTTTTTTAGCTA+AGG | - | chr4_1:39297404-39297423 | Msa0546850:CDS | 25.0% |
| ACAAAGTCATGATTCATCTT+TGG | - | chr4_1:39295725-39295744 | Msa0546850:CDS | 30.0% | |
| TATTCAAATGAAACATCACC+AGG | - | chr4_1:39295811-39295830 | Msa0546850:CDS | 30.0% | |
| !! | GAGGTTTGAGATTTTTGAAA+TGG | + | chr4_1:39295914-39295933 | None:intergenic | 30.0% |
| TCTTCTCAAATACTCAAACA+AGG | - | chr4_1:39295982-39296001 | Msa0546850:intron | 30.0% | |
| TTAGAACATGCACATTCAAT+AGG | + | chr4_1:39296024-39296043 | None:intergenic | 30.0% | |
| ATTGTCAAATATTGCTTGTG+AGG | - | chr4_1:39296095-39296114 | Msa0546850:intron | 30.0% | |
| TCCGATCAAAACAAAAATCA+AGG | - | chr4_1:39296150-39296169 | Msa0546850:intron | 30.0% | |
| CAAGGTAATGAACCAAAATT+TGG | - | chr4_1:39296168-39296187 | Msa0546850:intron | 30.0% | |
| ! | TGAAGAACATCACCAAATTT+TGG | + | chr4_1:39296183-39296202 | None:intergenic | 30.0% |
| ! | TATCTCACTTGATGATTTCT+TGG | - | chr4_1:39296326-39296345 | Msa0546850:intron | 30.0% |
| CTGAGGAAAAATTGATGAAA+AGG | + | chr4_1:39296370-39296389 | None:intergenic | 30.0% | |
| TTTGTTGGAAGAAAATTAGG+AGG | + | chr4_1:39296468-39296487 | None:intergenic | 30.0% | |
| !! | GGATTTGTTGGAAGAAAATT+AGG | + | chr4_1:39296471-39296490 | None:intergenic | 30.0% |
| ! | TCTTGTGTAAATGGATTTGT+TGG | + | chr4_1:39296483-39296502 | None:intergenic | 30.0% |
| !! | TGTGTTGATTCTTGTGTAAA+TGG | + | chr4_1:39296492-39296511 | None:intergenic | 30.0% |
| CCTGCAATATACAAATTTGA+TGG | + | chr4_1:39296516-39296535 | None:intergenic | 30.0% | |
| CCATCAAATTTGTATATTGC+AGG | - | chr4_1:39296513-39296532 | Msa0546850:CDS | 30.0% | |
| ! | TTATCTCCTGATTTTCTTGT+TGG | - | chr4_1:39296687-39296706 | Msa0546850:CDS | 30.0% |
| TTGATTCCAACAAGAAAATC+AGG | + | chr4_1:39296696-39296715 | None:intergenic | 30.0% | |
| ! | GCTTTTCAATCTCTTCTATA+TGG | + | chr4_1:39296737-39296756 | None:intergenic | 30.0% |
| TTTAGTGATGTGAACAAGAT+TGG | - | chr4_1:39296766-39296785 | Msa0546850:CDS | 30.0% | |
| !! | GATTGGTGATTTTGTTTACA+AGG | - | chr4_1:39296783-39296802 | Msa0546850:CDS | 30.0% |
| TGTTTACAAGGGTTAATCAA+TGG | - | chr4_1:39296795-39296814 | Msa0546850:CDS | 30.0% | |
| ! | GTGAGAGTGATTTAATTTCA+TGG | - | chr4_1:39296928-39296947 | Msa0546850:CDS | 30.0% |
| TTGCTTAAGGGATTGTTTAA+TGG | - | chr4_1:39296982-39297001 | Msa0546850:CDS | 30.0% | |
| !! | TGCCAATTTAAAGTATTGCA+TGG | + | chr4_1:39297010-39297029 | None:intergenic | 30.0% |
| ! | CAATTTTCCTCTCCAATTTT+CGG | + | chr4_1:39297143-39297162 | None:intergenic | 30.0% |
| ! | GTATCTAACAATCTTTTGCA+TGG | - | chr4_1:39297178-39297197 | Msa0546850:CDS | 30.0% |
| ! | AGAAAGCTTTGATGGAAAAT+TGG | - | chr4_1:39297267-39297286 | Msa0546850:CDS | 30.0% |
| ! | GATTGTGTTGGATTTTTGTT+TGG | - | chr4_1:39297295-39297314 | Msa0546850:CDS | 30.0% |
| ! | TTTTGTTGACCCAAATTTGA+AGG | - | chr4_1:39297359-39297378 | Msa0546850:CDS | 30.0% |
| TTTGAAGGATTATTCACTTC+CGG | - | chr4_1:39297374-39297393 | Msa0546850:CDS | 30.0% | |
| ACAAAGTCATGATTCATCTT+TGG | - | chr4_1:39295725-39295744 | Msa0546850:CDS | 30.0% | |
| TATTCAAATGAAACATCACC+AGG | - | chr4_1:39295811-39295830 | Msa0546850:CDS | 30.0% | |
| !! | GAGGTTTGAGATTTTTGAAA+TGG | + | chr4_1:39295914-39295933 | None:intergenic | 30.0% |
| TCTTCTCAAATACTCAAACA+AGG | - | chr4_1:39295982-39296001 | Msa0546850:intron | 30.0% | |
| TTAGAACATGCACATTCAAT+AGG | + | chr4_1:39296024-39296043 | None:intergenic | 30.0% | |
| ATTGTCAAATATTGCTTGTG+AGG | - | chr4_1:39296095-39296114 | Msa0546850:intron | 30.0% | |
| TCCGATCAAAACAAAAATCA+AGG | - | chr4_1:39296150-39296169 | Msa0546850:intron | 30.0% | |
| CAAGGTAATGAACCAAAATT+TGG | - | chr4_1:39296168-39296187 | Msa0546850:intron | 30.0% | |
| ! | TGAAGAACATCACCAAATTT+TGG | + | chr4_1:39296183-39296202 | None:intergenic | 30.0% |
| ! | TATCTCACTTGATGATTTCT+TGG | - | chr4_1:39296326-39296345 | Msa0546850:intron | 30.0% |
| CTGAGGAAAAATTGATGAAA+AGG | + | chr4_1:39296370-39296389 | None:intergenic | 30.0% | |
| TTTGTTGGAAGAAAATTAGG+AGG | + | chr4_1:39296468-39296487 | None:intergenic | 30.0% | |
| !! | GGATTTGTTGGAAGAAAATT+AGG | + | chr4_1:39296471-39296490 | None:intergenic | 30.0% |
| ! | TCTTGTGTAAATGGATTTGT+TGG | + | chr4_1:39296483-39296502 | None:intergenic | 30.0% |
| !! | TGTGTTGATTCTTGTGTAAA+TGG | + | chr4_1:39296492-39296511 | None:intergenic | 30.0% |
| CCTGCAATATACAAATTTGA+TGG | + | chr4_1:39296516-39296535 | None:intergenic | 30.0% | |
| CCATCAAATTTGTATATTGC+AGG | - | chr4_1:39296513-39296532 | Msa0546850:CDS | 30.0% | |
| ! | TTATCTCCTGATTTTCTTGT+TGG | - | chr4_1:39296687-39296706 | Msa0546850:CDS | 30.0% |
| TTGATTCCAACAAGAAAATC+AGG | + | chr4_1:39296696-39296715 | None:intergenic | 30.0% | |
| ! | GCTTTTCAATCTCTTCTATA+TGG | + | chr4_1:39296737-39296756 | None:intergenic | 30.0% |
| TTTAGTGATGTGAACAAGAT+TGG | - | chr4_1:39296766-39296785 | Msa0546850:CDS | 30.0% | |
| !! | GATTGGTGATTTTGTTTACA+AGG | - | chr4_1:39296783-39296802 | Msa0546850:CDS | 30.0% |
| TGTTTACAAGGGTTAATCAA+TGG | - | chr4_1:39296795-39296814 | Msa0546850:CDS | 30.0% | |
| ! | GTGAGAGTGATTTAATTTCA+TGG | - | chr4_1:39296928-39296947 | Msa0546850:CDS | 30.0% |
| TTGCTTAAGGGATTGTTTAA+TGG | - | chr4_1:39296982-39297001 | Msa0546850:CDS | 30.0% | |
| !! | TGCCAATTTAAAGTATTGCA+TGG | + | chr4_1:39297010-39297029 | None:intergenic | 30.0% |
| ! | CAATTTTCCTCTCCAATTTT+CGG | + | chr4_1:39297143-39297162 | None:intergenic | 30.0% |
| ! | GTATCTAACAATCTTTTGCA+TGG | - | chr4_1:39297178-39297197 | Msa0546850:CDS | 30.0% |
| ! | AGAAAGCTTTGATGGAAAAT+TGG | - | chr4_1:39297267-39297286 | Msa0546850:CDS | 30.0% |
| ! | GATTGTGTTGGATTTTTGTT+TGG | - | chr4_1:39297295-39297314 | Msa0546850:CDS | 30.0% |
| ! | TTTTGTTGACCCAAATTTGA+AGG | - | chr4_1:39297359-39297378 | Msa0546850:CDS | 30.0% |
| TTTGAAGGATTATTCACTTC+CGG | - | chr4_1:39297374-39297393 | Msa0546850:CDS | 30.0% | |
| TGACACATGCAAAACATTCT+TGG | - | chr4_1:39295861-39295880 | Msa0546850:intron | 35.0% | |
| !! | CCTTAGTGTTTTTGTTGAAG+AGG | + | chr4_1:39295933-39295952 | None:intergenic | 35.0% |
| CCTCTTCAACAAAAACACTA+AGG | - | chr4_1:39295930-39295949 | Msa0546850:intron | 35.0% | |
| GTATTTGAGAAGAAGATGTG+AGG | + | chr4_1:39295975-39295994 | None:intergenic | 35.0% | |
| !! | TGAGTTTGGCTTGGTAAAAT+TGG | + | chr4_1:39296047-39296066 | None:intergenic | 35.0% |
| AAGAACTTTGTAGCTGAGTT+TGG | + | chr4_1:39296061-39296080 | None:intergenic | 35.0% | |
| TTTGGACATGAACATCTAAG+AGG | + | chr4_1:39296210-39296229 | None:intergenic | 35.0% | |
| GTTACATACCCTCTTATACA+AGG | - | chr4_1:39296270-39296289 | Msa0546850:intron | 35.0% | |
| GGAATTAAAACAACTGTCTG+AGG | + | chr4_1:39296387-39296406 | None:intergenic | 35.0% | |
| GGACCATTTGAATCTCTTAT+TGG | + | chr4_1:39296408-39296427 | None:intergenic | 35.0% | |
| TATATTGCAGGACCTGTTAT+AGG | - | chr4_1:39296525-39296544 | Msa0546850:CDS | 35.0% | |
| ! | TTCATTACATTGGTTGCAAG+TGG | - | chr4_1:39296558-39296577 | Msa0546850:CDS | 35.0% |
| !! | GGTTGAGTTTGTTGGATTAA+AGG | + | chr4_1:39296628-39296647 | None:intergenic | 35.0% |
| CATAAAGTGGTTGAGTTTGT+TGG | + | chr4_1:39296636-39296655 | None:intergenic | 35.0% | |
| CAACAAACTCAACCACTTTA+TGG | - | chr4_1:39296634-39296653 | Msa0546850:CDS | 35.0% | |
| ! | TCTTATTGGTGACCATAAAG+TGG | + | chr4_1:39296649-39296668 | None:intergenic | 35.0% |
| GAAGTTGTAGAGGTTCTTAT+TGG | + | chr4_1:39296663-39296682 | None:intergenic | 35.0% | |
| AGATAAGCATGAAGTTGTAG+AGG | + | chr4_1:39296673-39296692 | None:intergenic | 35.0% | |
| AGGGTTAATCAATGGTATTG+AGG | - | chr4_1:39296803-39296822 | Msa0546850:CDS | 35.0% | |
| GTATTGAGGTGATGATAAAG+AGG | - | chr4_1:39296817-39296836 | Msa0546850:CDS | 35.0% | |
| TTACCTAAAACGGTTGCTTA+AGG | - | chr4_1:39296969-39296988 | Msa0546850:CDS | 35.0% | |
| TACCTAAAACGGTTGCTTAA+GGG | - | chr4_1:39296970-39296989 | Msa0546850:CDS | 35.0% | |
| ACATTCATGTGAGCATAAGA+AGG | + | chr4_1:39297097-39297116 | None:intergenic | 35.0% | |
| TTTGTAACCGAAAATTGGAG+AGG | - | chr4_1:39297133-39297152 | Msa0546850:CDS | 35.0% | |
| CGAAAATTGGAGAGGAAAAT+TGG | - | chr4_1:39297141-39297160 | Msa0546850:CDS | 35.0% | |
| !! | TGTTGGATTTTTGTTTGGGA+AGG | - | chr4_1:39297300-39297319 | Msa0546850:CDS | 35.0% |
| TGAAAGATGATCCATTGCAT+AGG | - | chr4_1:39297433-39297452 | Msa0546850:CDS | 35.0% | |
| TTCATGATATCATCCACAGT+TGG | + | chr4_1:39297459-39297478 | None:intergenic | 35.0% | |
| AACTGTGGATGATATCATGA+AGG | - | chr4_1:39297458-39297477 | Msa0546850:CDS | 35.0% | |
| CATGAAGGTTCTTGCAAAAA+TGG | - | chr4_1:39297473-39297492 | Msa0546850:CDS | 35.0% | |
| TGACACATGCAAAACATTCT+TGG | - | chr4_1:39295861-39295880 | Msa0546850:intron | 35.0% | |
| !! | CCTTAGTGTTTTTGTTGAAG+AGG | + | chr4_1:39295933-39295952 | None:intergenic | 35.0% |
| CCTCTTCAACAAAAACACTA+AGG | - | chr4_1:39295930-39295949 | Msa0546850:intron | 35.0% | |
| GTATTTGAGAAGAAGATGTG+AGG | + | chr4_1:39295975-39295994 | None:intergenic | 35.0% | |
| !! | TGAGTTTGGCTTGGTAAAAT+TGG | + | chr4_1:39296047-39296066 | None:intergenic | 35.0% |
| AAGAACTTTGTAGCTGAGTT+TGG | + | chr4_1:39296061-39296080 | None:intergenic | 35.0% | |
| TTTGGACATGAACATCTAAG+AGG | + | chr4_1:39296210-39296229 | None:intergenic | 35.0% | |
| GTTACATACCCTCTTATACA+AGG | - | chr4_1:39296270-39296289 | Msa0546850:intron | 35.0% | |
| GGAATTAAAACAACTGTCTG+AGG | + | chr4_1:39296387-39296406 | None:intergenic | 35.0% | |
| GGACCATTTGAATCTCTTAT+TGG | + | chr4_1:39296408-39296427 | None:intergenic | 35.0% | |
| TATATTGCAGGACCTGTTAT+AGG | - | chr4_1:39296525-39296544 | Msa0546850:CDS | 35.0% | |
| ! | TTCATTACATTGGTTGCAAG+TGG | - | chr4_1:39296558-39296577 | Msa0546850:CDS | 35.0% |
| !! | GGTTGAGTTTGTTGGATTAA+AGG | + | chr4_1:39296628-39296647 | None:intergenic | 35.0% |
| CATAAAGTGGTTGAGTTTGT+TGG | + | chr4_1:39296636-39296655 | None:intergenic | 35.0% | |
| CAACAAACTCAACCACTTTA+TGG | - | chr4_1:39296634-39296653 | Msa0546850:CDS | 35.0% | |
| ! | TCTTATTGGTGACCATAAAG+TGG | + | chr4_1:39296649-39296668 | None:intergenic | 35.0% |
| GAAGTTGTAGAGGTTCTTAT+TGG | + | chr4_1:39296663-39296682 | None:intergenic | 35.0% | |
| AGATAAGCATGAAGTTGTAG+AGG | + | chr4_1:39296673-39296692 | None:intergenic | 35.0% | |
| AGGGTTAATCAATGGTATTG+AGG | - | chr4_1:39296803-39296822 | Msa0546850:CDS | 35.0% | |
| GTATTGAGGTGATGATAAAG+AGG | - | chr4_1:39296817-39296836 | Msa0546850:CDS | 35.0% | |
| TTACCTAAAACGGTTGCTTA+AGG | - | chr4_1:39296969-39296988 | Msa0546850:CDS | 35.0% | |
| TACCTAAAACGGTTGCTTAA+GGG | - | chr4_1:39296970-39296989 | Msa0546850:CDS | 35.0% | |
| ACATTCATGTGAGCATAAGA+AGG | + | chr4_1:39297097-39297116 | None:intergenic | 35.0% | |
| TTTGTAACCGAAAATTGGAG+AGG | - | chr4_1:39297133-39297152 | Msa0546850:CDS | 35.0% | |
| CGAAAATTGGAGAGGAAAAT+TGG | - | chr4_1:39297141-39297160 | Msa0546850:CDS | 35.0% | |
| !! | TGTTGGATTTTTGTTTGGGA+AGG | - | chr4_1:39297300-39297319 | Msa0546850:CDS | 35.0% |
| TGAAAGATGATCCATTGCAT+AGG | - | chr4_1:39297433-39297452 | Msa0546850:CDS | 35.0% | |
| TTCATGATATCATCCACAGT+TGG | + | chr4_1:39297459-39297478 | None:intergenic | 35.0% | |
| AACTGTGGATGATATCATGA+AGG | - | chr4_1:39297458-39297477 | Msa0546850:CDS | 35.0% | |
| CATGAAGGTTCTTGCAAAAA+TGG | - | chr4_1:39297473-39297492 | Msa0546850:CDS | 35.0% | |
| ATGAAACATCACCAGGTTCA+AGG | - | chr4_1:39295818-39295837 | Msa0546850:CDS | 40.0% | |
| ! | ATTGCTTGTGAGGTTTTCGA+AGG | - | chr4_1:39296105-39296124 | Msa0546850:intron | 40.0% |
| ! | CTCACTTGATGATTTCTTGG+AGG | - | chr4_1:39296329-39296348 | Msa0546850:intron | 40.0% |
| GTTGGAAGAAAATTAGGAGG+CGG | + | chr4_1:39296465-39296484 | None:intergenic | 40.0% | |
| GAGATTTGAAGACACTAGTG+AGG | - | chr4_1:39296842-39296861 | Msa0546850:CDS | 40.0% | |
| ! | ATCCCTTAAGCAACCGTTTT+AGG | + | chr4_1:39296975-39296994 | None:intergenic | 40.0% |
| AGAGGAAAATTGGCAGATGT+GGG | - | chr4_1:39297151-39297170 | Msa0546850:CDS | 40.0% | |
| !! | GTGTTGCTTGAGTTGATATC+AGG | - | chr4_1:39297241-39297260 | Msa0546850:CDS | 40.0% |
| ! | TCAGGAAGAGAAAGCTTTGA+TGG | - | chr4_1:39297259-39297278 | Msa0546850:CDS | 40.0% |
| !!! | AAGGTGGTGGATGTTTTGAA+GGG | - | chr4_1:39297328-39297347 | Msa0546850:CDS | 40.0% |
| AAACACAAACAAAGAGCCTC+CGG | + | chr4_1:39297396-39297415 | None:intergenic | 40.0% | |
| ATGAAACATCACCAGGTTCA+AGG | - | chr4_1:39295818-39295837 | Msa0546850:CDS | 40.0% | |
| ! | ATTGCTTGTGAGGTTTTCGA+AGG | - | chr4_1:39296105-39296124 | Msa0546850:intron | 40.0% |
| ! | CTCACTTGATGATTTCTTGG+AGG | - | chr4_1:39296329-39296348 | Msa0546850:intron | 40.0% |
| GTTGGAAGAAAATTAGGAGG+CGG | + | chr4_1:39296465-39296484 | None:intergenic | 40.0% | |
| GAGATTTGAAGACACTAGTG+AGG | - | chr4_1:39296842-39296861 | Msa0546850:CDS | 40.0% | |
| ! | ATCCCTTAAGCAACCGTTTT+AGG | + | chr4_1:39296975-39296994 | None:intergenic | 40.0% |
| AGAGGAAAATTGGCAGATGT+GGG | - | chr4_1:39297151-39297170 | Msa0546850:CDS | 40.0% | |
| !! | GTGTTGCTTGAGTTGATATC+AGG | - | chr4_1:39297241-39297260 | Msa0546850:CDS | 40.0% |
| ! | TCAGGAAGAGAAAGCTTTGA+TGG | - | chr4_1:39297259-39297278 | Msa0546850:CDS | 40.0% |
| !!! | AAGGTGGTGGATGTTTTGAA+GGG | - | chr4_1:39297328-39297347 | Msa0546850:CDS | 40.0% |
| AAACACAAACAAAGAGCCTC+CGG | + | chr4_1:39297396-39297415 | None:intergenic | 40.0% | |
| TTGCAAGTGTACCTTGAACC+TGG | + | chr4_1:39295832-39295851 | None:intergenic | 45.0% | |
| CTTTGTAGCTGAGTTTGGCT+TGG | + | chr4_1:39296056-39296075 | None:intergenic | 45.0% | |
| GAGAGGAAAATTGGCAGATG+TGG | - | chr4_1:39297150-39297169 | Msa0546850:CDS | 45.0% | |
| GAGGAAAATTGGCAGATGTG+GGG | - | chr4_1:39297152-39297171 | Msa0546850:CDS | 45.0% | |
| AGGAAAATTGGCAGATGTGG+GGG | - | chr4_1:39297153-39297172 | Msa0546850:CDS | 45.0% | |
| GCATGGGACAGTTTCACAAA+AGG | - | chr4_1:39297195-39297214 | Msa0546850:CDS | 45.0% | |
| TTTGTTTGGGAAGGTAGCGA+AGG | - | chr4_1:39297309-39297328 | Msa0546850:CDS | 45.0% | |
| !!! | GAAGGTGGTGGATGTTTTGA+AGG | - | chr4_1:39297327-39297346 | Msa0546850:CDS | 45.0% |
| !!! | GTGGATGTTTTGAAGGGTTG+AGG | - | chr4_1:39297334-39297353 | Msa0546850:CDS | 45.0% |
| GAAGGATTATTCACTTCCGG+AGG | - | chr4_1:39297377-39297396 | Msa0546850:CDS | 45.0% | |
| TTGCAAGTGTACCTTGAACC+TGG | + | chr4_1:39295832-39295851 | None:intergenic | 45.0% | |
| CTTTGTAGCTGAGTTTGGCT+TGG | + | chr4_1:39296056-39296075 | None:intergenic | 45.0% | |
| GAGAGGAAAATTGGCAGATG+TGG | - | chr4_1:39297150-39297169 | Msa0546850:CDS | 45.0% | |
| GAGGAAAATTGGCAGATGTG+GGG | - | chr4_1:39297152-39297171 | Msa0546850:CDS | 45.0% | |
| AGGAAAATTGGCAGATGTGG+GGG | - | chr4_1:39297153-39297172 | Msa0546850:CDS | 45.0% | |
| GCATGGGACAGTTTCACAAA+AGG | - | chr4_1:39297195-39297214 | Msa0546850:CDS | 45.0% | |
| TTTGTTTGGGAAGGTAGCGA+AGG | - | chr4_1:39297309-39297328 | Msa0546850:CDS | 45.0% | |
| !!! | GAAGGTGGTGGATGTTTTGA+AGG | - | chr4_1:39297327-39297346 | Msa0546850:CDS | 45.0% |
| !!! | GTGGATGTTTTGAAGGGTTG+AGG | - | chr4_1:39297334-39297353 | Msa0546850:CDS | 45.0% |
| GAAGGATTATTCACTTCCGG+AGG | - | chr4_1:39297377-39297396 | Msa0546850:CDS | 45.0% | |
| AGAAAATTAGGAGGCGGCGA+AGG | + | chr4_1:39296459-39296478 | None:intergenic | 50.0% | |
| GGAAAATTGGCAGATGTGGG+GGG | - | chr4_1:39297154-39297173 | Msa0546850:CDS | 50.0% | |
| TCCATTGCATAGGCCAACTG+TGG | - | chr4_1:39297443-39297462 | Msa0546850:CDS | 50.0% | |
| ! | TCCACAGTTGGCCTATGCAA+TGG | + | chr4_1:39297447-39297466 | None:intergenic | 50.0% |
| AGAAAATTAGGAGGCGGCGA+AGG | + | chr4_1:39296459-39296478 | None:intergenic | 50.0% | |
| GGAAAATTGGCAGATGTGGG+GGG | - | chr4_1:39297154-39297173 | Msa0546850:CDS | 50.0% | |
| TCCATTGCATAGGCCAACTG+TGG | - | chr4_1:39297443-39297462 | Msa0546850:CDS | 50.0% | |
| ! | TCCACAGTTGGCCTATGCAA+TGG | + | chr4_1:39297447-39297466 | None:intergenic | 50.0% |
| GTTTGGGAAGGTAGCGAAGG+TGG | - | chr4_1:39297312-39297331 | Msa0546850:CDS | 55.0% | |
| GTTTGGGAAGGTAGCGAAGG+TGG | - | chr4_1:39297312-39297331 | Msa0546850:CDS | 55.0% | |
| TGGGAAGGTAGCGAAGGTGG+TGG | - | chr4_1:39297315-39297334 | Msa0546850:CDS | 60.0% | |
| TGGGAAGGTAGCGAAGGTGG+TGG | - | chr4_1:39297315-39297334 | Msa0546850:CDS | 60.0% | |
| GGAGGCGGCGAAGGAGAATC+TGG | + | chr4_1:39296450-39296469 | None:intergenic | 65.0% | |
| GGAGGCGGCGAAGGAGAATC+TGG | + | chr4_1:39296450-39296469 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 39295697 | 39297500 | 39295697 | ID=Msa0546850;Name=Msa0546850 |
| chr4_1 | mRNA | 39295697 | 39297500 | 39295697 | ID=Msa0546850-mRNA-1;Parent=Msa0546850;Name=Msa0546850-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|1|1|1|2|0|397 |
| chr4_1 | exon | 39296482 | 39297500 | 39296482 | ID=Msa0546850-mRNA-1:exon:10005;Parent=Msa0546850-mRNA-1 |
| chr4_1 | exon | 39295697 | 39295871 | 39295697 | ID=Msa0546850-mRNA-1:exon:10004;Parent=Msa0546850-mRNA-1 |
| chr4_1 | CDS | 39296482 | 39297500 | 39296482 | ID=Msa0546850-mRNA-1:cds;Parent=Msa0546850-mRNA-1 |
| chr4_1 | CDS | 39295697 | 39295871 | 39295697 | ID=Msa0546850-mRNA-1:cds;Parent=Msa0546850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
