AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0554870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0554870 MtrunA17_Chr4g0040611 72.204 608 13 6 4 497 3 568 0.0 794
Msa0554870 MtrunA17_Chr6g0462051 34.681 470 170 7 7 339 8 477 2.60e-84 271
Msa0554870 MtrunA17_Chr2g0326301 31.185 574 233 12 1 416 1 570 1.49e-74 246
Msa0554870 MtrunA17_Chr3g0144171 30.591 474 195 8 7 348 8 479 2.50e-67 226
Msa0554870 MtrunA17_Chr2g0291441 36.074 377 153 11 1 295 1 371 1.24e-63 214
Msa0554870 MtrunA17_Chr8g0370181 30.493 446 179 8 5 322 35 477 4.80e-63 215
Msa0554870 MtrunA17_Chr5g0407381 29.151 518 219 10 8 380 28 542 4.47e-62 212
Msa0554870 MtrunA17_Chr8g0337941 28.543 494 199 11 8 352 12 500 5.63e-58 200
Msa0554870 MtrunA17_Chr3g0145831 28.859 447 177 8 9 316 13 457 2.41e-55 193
Msa0554870 MtrunA17_Chr8g0337931 28.785 469 179 12 26 341 15 481 1.58e-49 177
Msa0554870 MtrunA17_Chr3g0144201 25.755 497 185 9 6 320 9 503 2.08e-45 167
Msa0554870 MtrunA17_Chr2g0317801 30.688 378 168 12 6 295 7 378 5.04e-43 160
Msa0554870 MtrunA17_Chr5g0405641 27.344 384 179 9 6 294 8 386 3.19e-25 107
Msa0554870 MtrunA17_Chr2g0277471 27.632 304 144 11 162 406 237 523 2.06e-23 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0554870 AT2G39200.1 31.127 559 227 11 1 406 1 554 6.16e-82 265
Msa0554870 AT1G61560.4 31.549 523 199 10 1 376 1 511 5.11e-80 260
Msa0554870 AT1G61560.1 31.549 523 199 10 1 376 1 511 6.31e-80 260
Msa0554870 AT1G11310.1 32.411 506 196 8 1 360 1 506 1.32e-78 256
Msa0554870 AT1G61560.6 35.787 394 150 6 1 294 1 391 3.05e-77 248
Msa0554870 AT1G61560.8 35.787 394 150 6 1 294 1 391 3.05e-77 248
Msa0554870 AT1G61560.5 35.787 394 150 6 1 294 1 391 3.05e-77 248
Msa0554870 AT1G61560.7 35.787 394 150 6 1 294 1 391 3.88e-77 248
Msa0554870 AT1G61560.9 35.787 394 150 6 1 294 1 391 3.88e-77 248
Msa0554870 AT1G61560.10 35.787 394 150 6 1 294 1 391 8.67e-77 248
Msa0554870 AT1G11310.2 35.787 394 153 5 1 294 1 394 5.99e-76 245
Msa0554870 AT4G02600.2 30.819 464 177 10 1 322 1 462 2.38e-59 204
Msa0554870 AT4G02600.1 30.819 464 177 10 1 322 1 462 2.38e-59 204
Msa0554870 AT1G61560.2 30.217 460 164 11 63 376 1 449 2.29e-58 201
Msa0554870 AT1G61560.3 30.217 460 164 11 63 376 1 449 2.29e-58 201
Msa0554870 AT1G11310.3 30.856 444 161 8 63 360 1 444 4.92e-57 197
Msa0554870 AT2G17430.1 30.575 435 179 8 8 321 31 463 6.10e-57 198
Msa0554870 AT3G45290.1 31.892 370 167 6 5 293 14 379 8.44e-57 197
Msa0554870 AT2G17480.1 29.157 439 180 7 7 316 38 474 2.61e-56 197
Msa0554870 AT2G44110.1 27.557 479 213 9 3 352 1 474 2.89e-54 190
Msa0554870 AT2G44110.2 27.500 480 213 9 3 352 1 475 4.10e-54 189
Msa0554870 AT2G33670.1 28.082 438 189 7 8 322 15 449 2.76e-53 187
Msa0554870 AT5G65970.1 29.371 429 185 6 5 317 31 457 3.79e-53 189
Msa0554870 AT4G24250.2 31.135 379 169 7 4 293 3 378 4.04e-48 171
Msa0554870 AT4G24250.1 31.135 379 169 7 4 293 3 378 5.94e-48 172
Msa0554870 AT5G65970.2 30.000 340 163 5 5 271 31 368 1.89e-45 166
Msa0554870 AT1G42560.1 27.865 445 189 9 8 322 14 456 2.50e-44 162
Msa0554870 AT1G26700.1 29.275 386 174 11 4 295 6 386 7.29e-44 163
Msa0554870 AT1G26700.2 29.275 386 174 11 4 295 6 386 7.29e-44 163
Msa0554870 AT5G53760.2 28.646 384 178 9 4 295 12 391 8.20e-44 163
Msa0554870 AT5G53760.1 28.646 384 178 9 4 295 12 391 8.20e-44 163
Msa0554870 AT1G11000.1 28.499 393 186 10 6 309 7 393 4.96e-37 144
Msa0554870 AT1G11000.3 28.499 393 186 10 6 309 7 393 4.96e-37 144
Msa0554870 AT1G42560.2 29.752 363 166 8 8 283 14 374 1.54e-36 139
Msa0554870 AT1G11000.2 28.316 392 188 9 6 309 7 393 3.41e-36 139

Find 90 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCTTGTTGATGCAAATTT+TGG 0.107483 4_1:+52607742 None:intergenic
TAAGGATGATTTGGATTAAA+TGG 0.181806 4_1:+52603506 None:intergenic
AAATATCTTAATCTCCATTT+TGG 0.201941 4_1:-52607137 Msa0554870:CDS
AACTGAGTTGTTGTTGCTTT+TGG 0.224442 4_1:+52602614 None:intergenic
TTTACCACAAGTGGAATAAA+TGG 0.270886 4_1:+52603793 None:intergenic
AGATCTTTGTTCTCCTTCTA+TGG 0.274984 4_1:+52608382 None:intergenic
TTGAAGATTGCTCTTCTTGC+GGG 0.303473 4_1:-52603658 Msa0554870:intron
GATATGAAACACAGCCAAAA+TGG 0.307125 4_1:+52607123 None:intergenic
TGATCATGCAAGAAAAGAAT+TGG 0.326385 4_1:-52607672 Msa0554870:CDS
TTGAGAAGGTTGTAGGAATC+AGG 0.332335 4_1:-52604300 Msa0554870:intron
GTACCTGGATAAGGATGATT+TGG 0.341935 4_1:+52603497 None:intergenic
GATTACTTTGCTCTACGAAA+TGG 0.343568 4_1:-52604779 Msa0554870:CDS
ATTAAATGGAGAAGCCATTC+AGG 0.350449 4_1:+52603520 None:intergenic
GTCATTTCTTCTGACAATAT+CGG 0.352637 4_1:-52607777 Msa0554870:CDS
CTAGTCACTACTATTACTTT+TGG 0.384195 4_1:+52602372 None:intergenic
GAGTATGCACAATAATAATA+AGG 0.384959 4_1:-52602538 Msa0554870:CDS
GAGTATGCACGATAATAATA+AGG 0.399771 4_1:-52602478 Msa0554870:CDS
TGAAGGAGGTCTCCACAAAT+TGG 0.400561 4_1:-52608291 Msa0554870:CDS
GTTATATCATTGCTCATTGA+AGG 0.402100 4_1:-52608308 Msa0554870:CDS
AAGACTGTTGAGGAAAATAA+TGG 0.404778 4_1:-52602249 Msa0554870:CDS
TAATTACCTCAGCCAATTTG+TGG 0.407648 4_1:+52608279 None:intergenic
CCACTTCCAGAGTTGTTACC+AGG 0.412305 4_1:+52602342 None:intergenic
AAACCTCTCATGGCCATAGA+AGG 0.415078 4_1:-52608395 None:intergenic
GGCTTTGCTTGCAACTATCT+AGG 0.416507 4_1:+52603602 None:intergenic
ATTACTTTGCTCTACGAAAT+GGG 0.431916 4_1:-52604778 Msa0554870:CDS
AAACTGAGACAGCCCATGTT+GGG 0.433884 4_1:+52608348 None:intergenic
GAGTATGCTCAACAACAATA+AGG 0.436327 4_1:-52602418 Msa0554870:CDS
TATGACGGTGAGATCTCCTT+TGG 0.443120 4_1:-52602204 Msa0554870:CDS
GCTTTGACCAAAACTAAAAC+AGG 0.444591 4_1:-52608058 Msa0554870:intron
TTTGGTTTCATAAACCTGAA+TGG 0.459950 4_1:-52603534 Msa0554870:CDS
CTGTGAGTGCAGGGCAAGGT+AGG 0.461307 4_1:-52607190 Msa0554870:intron
AACAGTCTTAATTTCTGAAG+TGG 0.475304 4_1:+52602263 None:intergenic
AAAATCTTCGTCGTAAGTGC+GGG 0.479119 4_1:+52604321 None:intergenic
AGATTAAGATATTTAGCTCC+AGG 0.480755 4_1:+52607146 None:intergenic
GGTAGTAGTAGCAGAGGCAT+AGG 0.481563 4_1:-52602171 Msa0554870:CDS
GATCATGCAAGAAAAGAATT+GGG 0.482157 4_1:-52607671 Msa0554870:CDS
ATCTTTCACAGATGAGAAGA+TGG 0.492186 4_1:-52605896 Msa0554870:intron
AATCCAAATCATCCTTATCC+AGG 0.494454 4_1:-52603500 Msa0554870:intron
AATTTCAAGTGAAGGAATCC+TGG 0.501929 4_1:-52607164 Msa0554870:CDS
GATCTCCTTTGGAGTGTATG+TGG 0.505690 4_1:-52602193 Msa0554870:CDS
TTCATATTCCTTAGCGCACA+TGG 0.505852 4_1:-52604017 Msa0554870:intron
CCTGGTAACAACTCTGGAAG+TGG 0.506889 4_1:-52602342 Msa0554870:CDS
AGTATGGTTCCTTTGATCAC+AGG 0.507864 4_1:+52603580 None:intergenic
ATTGAAGATTGCTCTTCTTG+CGG 0.519046 4_1:-52603659 Msa0554870:intron
CAAAATCTTCGTCGTAAGTG+CGG 0.522068 4_1:+52604320 None:intergenic
GATATGAAATTTACCACAAG+TGG 0.523559 4_1:+52603784 None:intergenic
AAAGATTCTGAGTACTTAGC+AGG 0.531068 4_1:-52607695 Msa0554870:CDS
GTAGTAGTAGCAGAGGCATA+GGG 0.538522 4_1:-52602170 Msa0554870:CDS
GCTTCCATTTATTCCACTTG+TGG 0.539948 4_1:-52603797 Msa0554870:intron
CCTCCTCCTGGTAACAACTC+TGG 0.540953 4_1:-52602348 Msa0554870:CDS
CTCTTGAAGAAACCCCAACA+TGG 0.546661 4_1:-52608361 Msa0554870:CDS
AGGTGGAAAATGTCTCAGTA+AGG 0.554389 4_1:-52602518 Msa0554870:CDS
GATGGGGTCTAACATGAGAA+AGG 0.555306 4_1:-52602703 Msa0554870:CDS
CTCACCGTCATAGATTCCTC+TGG 0.557735 4_1:+52602215 None:intergenic
CAAACTGAGACAGCCCATGT+TGG 0.568515 4_1:+52608347 None:intergenic
TTCAGAAATTAAGACTGTTG+AGG 0.569497 4_1:-52602259 Msa0554870:CDS
TTCACGGACCATGTTACACC+AGG 0.571724 4_1:-52602675 Msa0554870:CDS
GTATGGTTCCTTTGATCACA+GGG 0.572250 4_1:+52603581 None:intergenic
GAACAAGTGAGAATTCAGTA+AGG 0.572786 4_1:-52602578 Msa0554870:CDS
GTAGTGACTAGTCCTCCTCC+TGG 0.573389 4_1:-52602360 Msa0554870:CDS
TGTGAGTGCAGGGCAAGGTA+GGG 0.573706 4_1:-52607189 Msa0554870:intron
CCAGAGTTGTTACCAGGAGG+AGG 0.576377 4_1:+52602348 None:intergenic
AAGCAAAGCCCTGTGATCAA+AGG 0.576388 4_1:-52603589 Msa0554870:CDS
GTAGGGATAATTTCAAGTGA+AGG 0.579816 4_1:-52607172 Msa0554870:CDS
CAACTCTGGAAGTGGAGAAG+AGG 0.584996 4_1:-52602334 Msa0554870:CDS
TTGCTTCACAATAGTTCTCG+TGG 0.588634 4_1:+52607645 None:intergenic
TGAAGATTGCTCTTCTTGCG+GGG 0.590863 4_1:-52603657 Msa0554870:intron
GAAAAGAAAGTCCATGGGGA+AGG 0.592636 4_1:-52608080 Msa0554870:CDS
ATCTCCTTTGGAGTGTATGT+GGG 0.593287 4_1:-52602192 Msa0554870:CDS
TTTGGTCAAAGCCTTCCCCA+TGG 0.601512 4_1:+52608069 None:intergenic
AACTGAGACAGCCCATGTTG+GGG 0.609015 4_1:+52608349 None:intergenic
TATGTGGGTAGTAGTAGCAG+AGG 0.612540 4_1:-52602177 Msa0554870:CDS
AGGTCTCCACAAATTGGCTG+AGG 0.613365 4_1:-52608285 Msa0554870:intron
ATATCATTGCTCATTGAAGG+AGG 0.616291 4_1:-52608305 Msa0554870:CDS
CAATGAGCAATGATATAACA+AGG 0.619401 4_1:+52608312 None:intergenic
TCTTGAAGAAACCCCAACAT+GGG 0.624163 4_1:-52608360 Msa0554870:CDS
TAGTAGTAGCAGAGGCATAG+GGG 0.625440 4_1:-52602169 Msa0554870:CDS
CGAGAACTATTGTGAAGCAA+AGG 0.626303 4_1:-52607642 Msa0554870:intron
TATGCACGATAATAATAAGG+TGG 0.626838 4_1:-52602475 Msa0554870:CDS
TATGCACAATAATAATAAGG+TGG 0.626838 4_1:-52602535 Msa0554870:CDS
AAGTACTCAGAATCTTTACA+TGG 0.627255 4_1:+52607701 None:intergenic
GTCCAAAATTTGCATCAACA+AGG 0.628409 4_1:-52607744 Msa0554870:CDS
CTTGAATATCAGATAGACAA+TGG 0.634126 4_1:-52605846 Msa0554870:intron
TATGCTCAACAACAATAAGG+TGG 0.634436 4_1:-52602415 Msa0554870:CDS
AAAATAGAAATGATGAAACT+CGG 0.643405 4_1:-52607806 Msa0554870:intron
ACTACCCACATACACTCCAA+AGG 0.653190 4_1:+52602188 None:intergenic
ATCACCAGAGGAATCTATGA+CGG 0.655023 4_1:-52602219 Msa0554870:CDS
CTTCCAGAGTTGTTACCAGG+AGG 0.684826 4_1:+52602345 None:intergenic
AATGGTAAGATCATCACCAG+AGG 0.694073 4_1:-52602231 Msa0554870:CDS
AAAAGAAAAGAAAGTCCATG+GGG 0.725165 4_1:-52608084 Msa0554870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTACCTTTTTTTTTTTTTT+TGG - chr4_1:52602511-52602530 Msa0554870:CDS 10.0%
!!! GATTTTTTTAATATGTAAAT+CGG - chr4_1:52603048-52603067 Msa0554870:intron 10.0%
!!! CAAAAATAGTTTTATATTTT+TGG + chr4_1:52603736-52603755 None:intergenic 10.0%
!!! TATTTTTGAACTTTTTAAAT+TGG + chr4_1:52605249-52605268 None:intergenic 10.0%
!! TTTAAAAAGTTCAAAAATAT+AGG - chr4_1:52605250-52605269 Msa0554870:intron 10.0%
!! TTAAAAAGTTCAAAAATATA+GGG - chr4_1:52605251-52605270 Msa0554870:intron 10.0%
!!! TATATGATAGAATTTTTTTT+AGG + chr4_1:52605483-52605502 None:intergenic 10.0%
!! ATTGTCAAATTTATTATTTA+TGG - chr4_1:52605855-52605874 Msa0554870:CDS 10.0%
!! GTACAATTTATTATATTTAA+AGG - chr4_1:52606769-52606788 Msa0554870:intron 10.0%
!! ATTACTAATGAATATTATAT+TGG - chr4_1:52607171-52607190 Msa0554870:CDS 10.0%
!!! TTTTTATTTAAAAAGTGATG+AGG - chr4_1:52602597-52602616 Msa0554870:CDS 15.0%
!!! AATTATTAGCTTAATTAAGT+TGG - chr4_1:52602660-52602679 Msa0554870:CDS 15.0%
!! AAATAAATATGACTAAACTA+CGG + chr4_1:52603022-52603041 None:intergenic 15.0%
!! AATAAAAATAAAAACAGACA+AGG + chr4_1:52603114-52603133 None:intergenic 15.0%
!! AATGTTAGTTAATAATTGTT+AGG - chr4_1:52603148-52603167 Msa0554870:intron 15.0%
!!! TTACTTTTAGTTTTTTTTAG+TGG + chr4_1:52603699-52603718 None:intergenic 15.0%
!!! ATAATATAAAAGTATATACG+TGG + chr4_1:52603860-52603879 None:intergenic 15.0%
!! GAAGAAATAAAATAATTGAT+GGG + chr4_1:52604311-52604330 None:intergenic 15.0%
!! TGAAGAAATAAAATAATTGA+TGG + chr4_1:52604312-52604331 None:intergenic 15.0%
!!! AATTATTTTATTTCTTCAGT+TGG - chr4_1:52604314-52604333 Msa0554870:CDS 15.0%
!! TACATGATTTATATATCATA+TGG - chr4_1:52604514-52604533 Msa0554870:intron 15.0%
!!! TAATGAAATTACTAGTATTT+TGG - chr4_1:52605124-52605143 Msa0554870:intron 15.0%
!!! AATGAAATTACTAGTATTTT+GGG - chr4_1:52605125-52605144 Msa0554870:intron 15.0%
!!! ATTTTTAAAACTTTGTAAGT+TGG + chr4_1:52605219-52605238 None:intergenic 15.0%
!!! AATTTGTTAAAGCTAAATTT+AGG + chr4_1:52605381-52605400 None:intergenic 15.0%
!! TTCTATCATATAATATTTGA+AGG - chr4_1:52605491-52605510 Msa0554870:intron 15.0%
!! TCTATCATATAATATTTGAA+GGG - chr4_1:52605492-52605511 Msa0554870:intron 15.0%
!!! ATAGGTAATGTAATTTTTTT+CGG + chr4_1:52605528-52605547 None:intergenic 15.0%
!!! TAATTCAACTTCAATTTTAT+AGG + chr4_1:52605546-52605565 None:intergenic 15.0%
!!! CTTATAAGTTTATTTTTTCA+TGG - chr4_1:52606560-52606579 Msa0554870:intron 15.0%
!! AGAATCATCATATTTAAAAA+AGG + chr4_1:52607225-52607244 None:intergenic 15.0%
!! AATTAGTTGAATATTGTTTA+AGG - chr4_1:52607428-52607447 Msa0554870:intron 15.0%
!! AAAATTATTTCAATCAAAGA+TGG - chr4_1:52607635-52607654 Msa0554870:intron 15.0%
!! TTTAAATTTGCAACTAACTA+AGG - chr4_1:52602487-52602506 Msa0554870:CDS 20.0%
!!! ACCTTTTTTTTTTTTTTTGG+TGG - chr4_1:52602514-52602533 Msa0554870:CDS 20.0%
!! AAAATAGAAATGATGAAACT+CGG - chr4_1:52602696-52602715 Msa0554870:CDS 20.0%
!!! AAATATCTTAATCTCCATTT+TGG - chr4_1:52603365-52603384 Msa0554870:intron 20.0%
!!! TCATATGTAAAAGTATTCAT+TGG - chr4_1:52603617-52603636 Msa0554870:CDS 20.0%
!! AAAAAGGAAAAGAAATTGAT+AGG + chr4_1:52604279-52604298 None:intergenic 20.0%
!!! CATATTATCAATTGATTTTG+TGG + chr4_1:52604367-52604386 None:intergenic 20.0%
!!! ATATCTATTAAAAAGTACTG+TGG - chr4_1:52604543-52604562 Msa0554870:intron 20.0%
!!! TATCTATTAAAAAGTACTGT+GGG - chr4_1:52604544-52604563 Msa0554870:intron 20.0%
!! TAATAACACATCAAAGATTA+AGG + chr4_1:52604685-52604704 None:intergenic 20.0%
!! TAAACATGAAATATTTAGAG+TGG - chr4_1:52604949-52604968 Msa0554870:intron 20.0%
!!! AAACATGAAATATTTAGAGT+GGG - chr4_1:52604950-52604969 Msa0554870:intron 20.0%
!!! TTGAGGTAATTTATTTTTTG+AGG - chr4_1:52604991-52605010 Msa0554870:intron 20.0%
!!! TGAGGTAATTTATTTTTTGA+GGG - chr4_1:52604992-52605011 Msa0554870:intron 20.0%
!! TCTACATAAATTTCATTCTT+CGG - chr4_1:52605027-52605046 Msa0554870:intron 20.0%
!! CATTAGAATTCCTTAAATTT+AGG + chr4_1:52605109-52605128 None:intergenic 20.0%
!!! TTCTTTCAAAATTTTCAAAG+TGG + chr4_1:52605278-52605297 None:intergenic 20.0%
!! ATTTGACATTCACATTATAT+AGG - chr4_1:52605310-52605329 Msa0554870:intron 20.0%
!! ATTTCAAATTCCTAGATTTA+TGG - chr4_1:52605343-52605362 Msa0554870:intron 20.0%
!!! TTTAGGTAGTGTAATTTTAA+AGG + chr4_1:52605466-52605485 None:intergenic 20.0%
!!! AATTATCCTTTAAGATTTGA+AGG - chr4_1:52605561-52605580 Msa0554870:intron 20.0%
!!! ATTATCCTTTAAGATTTGAA+GGG - chr4_1:52605562-52605581 Msa0554870:intron 20.0%
!!! GTAAAGCATTTGATATTATA+TGG + chr4_1:52605611-52605630 None:intergenic 20.0%
!! TTTATGGTAATTCTAAATTG+TGG - chr4_1:52605871-52605890 Msa0554870:CDS 20.0%
!!! TTTAGAAGTATTGACTTTAT+TGG - chr4_1:52606019-52606038 Msa0554870:intron 20.0%
!! CTTCTATAACAAAATATAAG+CGG + chr4_1:52606262-52606281 None:intergenic 20.0%
!! ACTTATAAGTAAAATAGCAA+GGG + chr4_1:52606549-52606568 None:intergenic 20.0%
!! AACTTATAAGTAAAATAGCA+AGG + chr4_1:52606550-52606569 None:intergenic 20.0%
!! AATAAACAACAGTATGAATT+TGG - chr4_1:52607254-52607273 Msa0554870:intron 20.0%
!! TTTAAACTCTAAATTACTAG+CGG + chr4_1:52607591-52607610 None:intergenic 20.0%
!! ATGTTAATACTCTTCAAATT+AGG + chr4_1:52607688-52607707 None:intergenic 20.0%
!!! AATTTGAAGAGTATTAACAT+TGG - chr4_1:52607688-52607707 Msa0554870:CDS 20.0%
!! TCTAAAAAATTGGCATAAAA+AGG - chr4_1:52607850-52607869 Msa0554870:intron 20.0%
! GCATTTATGAAAAAACTTGT+TGG - chr4_1:52602275-52602294 Msa0554870:CDS 25.0%
! AAAAAGAAAAGAAAGTCCAT+GGG - chr4_1:52602417-52602436 Msa0554870:CDS 25.0%
! GCCACCAAAAAAAAAAAAAA+AGG + chr4_1:52602518-52602537 None:intergenic 25.0%
!!! TTTTTTTTTTTTTTGGTGGC+CGG - chr4_1:52602518-52602537 Msa0554870:CDS 25.0%
! AACAATGCATAAAATATGCA+AGG + chr4_1:52602558-52602577 None:intergenic 25.0%
!! ATTTATAAAAGCCTTTGAGA+AGG + chr4_1:52602935-52602954 None:intergenic 25.0%
!!! GTTTTTTTTAGTGGTACTTT+TGG + chr4_1:52603690-52603709 None:intergenic 25.0%
! AACTAGAAGGAAGAAAATTA+AGG - chr4_1:52603832-52603851 Msa0554870:intron 25.0%
! ACTAGAAGGAAGAAAATTAA+GGG - chr4_1:52603833-52603852 Msa0554870:intron 25.0%
! GGATTAAGGTCATAAAAAAA+AGG + chr4_1:52604419-52604438 None:intergenic 25.0%
!!! AGTCAAAATTTTAGTTGGAA+GGG + chr4_1:52604441-52604460 None:intergenic 25.0%
!!! AACTGAGTCAAAATTTTAGT+TGG + chr4_1:52604446-52604465 None:intergenic 25.0%
! CAGTATATAAGTCAAACATT+GGG - chr4_1:52604841-52604860 Msa0554870:intron 25.0%
! TTGTAAGTGAATTATAAGAG+TGG - chr4_1:52604914-52604933 Msa0554870:intron 25.0%
!! TTTTGTCCAACCTAAATTTA+AGG - chr4_1:52605096-52605115 Msa0554870:intron 25.0%
! AGAATTCCTTAAATTTAGGT+TGG + chr4_1:52605105-52605124 None:intergenic 25.0%
! AGATAGAGTAATAAAAGTTG+AGG - chr4_1:52605191-52605210 Msa0554870:intron 25.0%
! GATAGAGTAATAAAAGTTGA+GGG - chr4_1:52605192-52605211 Msa0554870:intron 25.0%
! CATTCACATTATATAGGATT+TGG - chr4_1:52605316-52605335 Msa0554870:intron 25.0%
!! ATTTCAAGTACCATAAATCT+AGG + chr4_1:52605356-52605375 None:intergenic 25.0%
!! TTTTTCCCTTCAAATCTTAA+AGG + chr4_1:52605570-52605589 None:intergenic 25.0%
! TAAGATTTGAAGGGAAAAAA+TGG - chr4_1:52605571-52605590 Msa0554870:intron 25.0%
! AATTAGAGTCATATATACTG+TGG - chr4_1:52605642-52605661 Msa0554870:intron 25.0%
!! GACAATTAAGTTCTTGTTTA+TGG + chr4_1:52605841-52605860 None:intergenic 25.0%
! TTTGATACCGTAACAAAATA+TGG - chr4_1:52605912-52605931 Msa0554870:intron 25.0%
!!! CCACAATTTAAATTTTTGAG+TGG + chr4_1:52605974-52605993 None:intergenic 25.0%
! CCACTCAAAAATTTAAATTG+TGG - chr4_1:52605971-52605990 Msa0554870:intron 25.0%
!! TATGGAACATATTTGGATTT+TGG - chr4_1:52606066-52606085 Msa0554870:intron 25.0%
! ACTTACATGTATCTATGATA+GGG + chr4_1:52606238-52606257 None:intergenic 25.0%
! AACTTACATGTATCTATGAT+AGG + chr4_1:52606239-52606258 None:intergenic 25.0%
! TGCGTATATATATATATGCA+AGG - chr4_1:52606293-52606312 Msa0554870:intron 25.0%
! CAAGGTTCCTAATTATAATA+TGG - chr4_1:52606311-52606330 Msa0554870:intron 25.0%
!! TAATCTTTTTATACTCTTGC+AGG - chr4_1:52606435-52606454 Msa0554870:intron 25.0%
! GCTAAGGAATATGAAAAATA+TGG + chr4_1:52606480-52606499 None:intergenic 25.0%
!!! CAGAGTTTTATAATTACTAC+TGG - chr4_1:52606683-52606702 Msa0554870:intron 25.0%
!! AACCAAGTGATGAATATTTT+TGG - chr4_1:52606950-52606969 Msa0554870:intron 25.0%
! AACCAAAAATATTCATCACT+TGG + chr4_1:52606955-52606974 None:intergenic 25.0%
!! TAAGGATGATTTGGATTAAA+TGG + chr4_1:52606999-52607018 None:intergenic 25.0%
!! TATTGTTTAAGGTTGTTATG+AGG - chr4_1:52607439-52607458 Msa0554870:intron 25.0%
! CACTATTTATAGTGATCATA+AGG + chr4_1:52607501-52607520 None:intergenic 25.0%
! TAGTGATCATTTGTGATATA+TGG - chr4_1:52607516-52607535 Msa0554870:intron 25.0%
! TCAAATTAGGTCAAATCATT+CGG + chr4_1:52607675-52607694 None:intergenic 25.0%
! GAGTATGCACAATAATAATA+AGG - chr4_1:52607964-52607983 Msa0554870:intron 25.0%
! TATGCACAATAATAATAAGG+TGG - chr4_1:52607967-52607986 Msa0554870:intron 25.0%
CAATGAGCAATGATATAACA+AGG + chr4_1:52602193-52602212 None:intergenic 30.0%
GTTATATCATTGCTCATTGA+AGG - chr4_1:52602194-52602213 Msa0554870:CDS 30.0%
! CATATATGCTTCAGTTTTTG+AGG - chr4_1:52602394-52602413 Msa0554870:CDS 30.0%
GAAAAAGAAAAGAAAGTCCA+TGG - chr4_1:52602416-52602435 Msa0554870:CDS 30.0%
AAAAGAAAAGAAAGTCCATG+GGG - chr4_1:52602418-52602437 Msa0554870:CDS 30.0%
!!! TAACCAACCTGTTTTAGTTT+TGG + chr4_1:52602454-52602473 None:intergenic 30.0%
!!! TTTTTTTTTTTTTGGTGGCC+GGG - chr4_1:52602519-52602538 Msa0554870:CDS 30.0%
GTCATTTCTTCTGACAATAT+CGG - chr4_1:52602725-52602744 Msa0554870:intron 30.0%
! TTGATGCAAATTTTGGACAT+TGG + chr4_1:52602756-52602775 None:intergenic 30.0%
! ATCCTTGTTGATGCAAATTT+TGG + chr4_1:52602763-52602782 None:intergenic 30.0%
AAGTACTCAGAATCTTTACA+TGG + chr4_1:52602804-52602823 None:intergenic 30.0%
TGATCATGCAAGAAAAGAAT+TGG - chr4_1:52602830-52602849 Msa0554870:intron 30.0%
GATCATGCAAGAAAAGAATT+GGG - chr4_1:52602831-52602850 Msa0554870:intron 30.0%
TTCAACTTGATGTATAACTC+TGG + chr4_1:52603196-52603215 None:intergenic 30.0%
! AGATTAAGATATTTAGCTCC+AGG + chr4_1:52603359-52603378 None:intergenic 30.0%
ACATCGTTAATGTACAGTAA+AGG + chr4_1:52603404-52603423 None:intergenic 30.0%
TACAATTGTGACAGTTACTT+TGG - chr4_1:52603771-52603790 Msa0554870:intron 30.0%
! TGTTGTAACTTGTAACTAGA+AGG - chr4_1:52603819-52603838 Msa0554870:CDS 30.0%
!!! CCAGTTTTGACTTTATGTTA+TGG + chr4_1:52603996-52604015 None:intergenic 30.0%
CCATAACATAAAGTCAAAAC+TGG - chr4_1:52603993-52604012 Msa0554870:intron 30.0%
AAAACTACTAAGCTAGAGTA+CGG + chr4_1:52604183-52604202 None:intergenic 30.0%
AAAGAAATTGATAGGTGGTT+TGG + chr4_1:52604271-52604290 None:intergenic 30.0%
AAGGAAAAGAAATTGATAGG+TGG + chr4_1:52604276-52604295 None:intergenic 30.0%
! TGATGGGTATACACAAAAAA+AGG + chr4_1:52604295-52604314 None:intergenic 30.0%
TTGTGGCATATTATCAAGTT+TGG + chr4_1:52604350-52604369 None:intergenic 30.0%
!!! GTCAAAATTTTAGTTGGAAG+GGG + chr4_1:52604440-52604459 None:intergenic 30.0%
!!! GAGTCAAAATTTTAGTTGGA+AGG + chr4_1:52604442-52604461 None:intergenic 30.0%
CAATATCACATGTAAGGAAT+GGG + chr4_1:52604581-52604600 None:intergenic 30.0%
TAAGTGCAATATCACATGTA+AGG + chr4_1:52604587-52604606 None:intergenic 30.0%
AGATGAGAAGATGGAAAAAA+TGG - chr4_1:52604615-52604634 Msa0554870:intron 30.0%
GATGAGAAGATGGAAAAAAT+GGG - chr4_1:52604616-52604635 Msa0554870:intron 30.0%
CTTGAATATCAGATAGACAA+TGG - chr4_1:52604656-52604675 Msa0554870:intron 30.0%
AGCTCAATTTATTTAGACAG+AGG + chr4_1:52604722-52604741 None:intergenic 30.0%
! CCAATGTTTGACTTATATAC+TGG + chr4_1:52604843-52604862 None:intergenic 30.0%
CCAGTATATAAGTCAAACAT+TGG - chr4_1:52604840-52604859 Msa0554870:intron 30.0%
TATATAAGTCAAACATTGGG+TGG - chr4_1:52604844-52604863 Msa0554870:intron 30.0%
! TTGAATGAGAGAATGTTTTG+AGG - chr4_1:52604974-52604993 Msa0554870:intron 30.0%
TCACATTATATAGGATTTGG+AGG - chr4_1:52605319-52605338 Msa0554870:intron 30.0%
CTGTGGTTTATTCTATGTAT+AGG - chr4_1:52605659-52605678 Msa0554870:intron 30.0%
! ATGTATAGGTCTGTTTTATG+CGG - chr4_1:52605673-52605692 Msa0554870:intron 30.0%
ATTACTTTGCTCTACGAAAT+GGG - chr4_1:52605724-52605743 Msa0554870:intron 30.0%
!! AAGTTTCATGTTGGTAATAG+TGG + chr4_1:52605772-52605791 None:intergenic 30.0%
! GTTGCATCCATATTTTGTTA+CGG + chr4_1:52605922-52605941 None:intergenic 30.0%
AAGTCAATACTTCTAAACTG+TGG + chr4_1:52606016-52606035 None:intergenic 30.0%
TGCAATGTATGGAACATATT+TGG - chr4_1:52606059-52606078 Msa0554870:intron 30.0%
! CTGCAGAAAAATATTTCTGA+AGG - chr4_1:52606123-52606142 Msa0554870:intron 30.0%
CTTGCGTCCATATTATAATT+AGG + chr4_1:52606321-52606340 None:intergenic 30.0%
! TTTTATACTCTTGCAGGTTT+TGG - chr4_1:52606441-52606460 Msa0554870:intron 30.0%
TTTACCACAAGTGGAATAAA+TGG + chr4_1:52606712-52606731 None:intergenic 30.0%
GATATGAAATTTACCACAAG+TGG + chr4_1:52606721-52606740 None:intergenic 30.0%
!!! ATCACTTGGTTTTACAAGTA+TGG + chr4_1:52606941-52606960 None:intergenic 30.0%
! TTTGGTTTCATAAACCTGAA+TGG - chr4_1:52606968-52606987 Msa0554870:intron 30.0%
TAAAAAGTAGTACCTGGATA+AGG + chr4_1:52607017-52607036 None:intergenic 30.0%
TTCTCATAAAAAGTAGTACC+TGG + chr4_1:52607023-52607042 None:intergenic 30.0%
! AGTGAAAAATGCAAGTTGAA+AGG + chr4_1:52607128-52607147 None:intergenic 30.0%
! TTCAACTTGCATTTTTCACT+TGG - chr4_1:52607128-52607147 Msa0554870:intron 30.0%
TTGCTTCAATAGAGAAAAAG+AGG - chr4_1:52607286-52607305 Msa0554870:intron 30.0%
GGAAGAGTAAAAACAAAAGA+TGG + chr4_1:52607552-52607571 None:intergenic 30.0%
! TTTTACTCTTCCGTTTCAAT+AGG - chr4_1:52607560-52607579 Msa0554870:intron 30.0%
! CATGAGAAAGGAAATTTTCA+CGG - chr4_1:52607811-52607830 Msa0554870:intron 30.0%
TTACACCAGGTCTAAAAAAT+TGG - chr4_1:52607840-52607859 Msa0554870:intron 30.0%
!!! TTATGCCAATTTTTTAGACC+TGG + chr4_1:52607848-52607867 None:intergenic 30.0%
GAGTATGCACGATAATAATA+AGG - chr4_1:52608024-52608043 Msa0554870:intron 30.0%
TATGCACGATAATAATAAGG+TGG - chr4_1:52608027-52608046 Msa0554870:intron 30.0%
! CTAGTCACTACTATTACTTT+TGG + chr4_1:52608133-52608152 None:intergenic 30.0%
! AACAGTCTTAATTTCTGAAG+TGG + chr4_1:52608242-52608261 None:intergenic 30.0%
TTCAGAAATTAAGACTGTTG+AGG - chr4_1:52608243-52608262 Msa0554870:intron 30.0%
AAGACTGTTGAGGAAAATAA+TGG - chr4_1:52608253-52608272 Msa0554870:intron 30.0%
AGATCTTTGTTCTCCTTCTA+TGG + chr4_1:52602123-52602142 None:intergenic 35.0%
ATATCATTGCTCATTGAAGG+AGG - chr4_1:52602197-52602216 Msa0554870:CDS 35.0%
TAATTACCTCAGCCAATTTG+TGG + chr4_1:52602226-52602245 None:intergenic 35.0%
GCTTTGACCAAAACTAAAAC+AGG - chr4_1:52602444-52602463 Msa0554870:CDS 35.0%
TGACCAAAACTAAAACAGGT+TGG - chr4_1:52602448-52602467 Msa0554870:CDS 35.0%
CATAAAATATGCAAGGTCCA+GGG + chr4_1:52602551-52602570 None:intergenic 35.0%
GTCCAAAATTTGCATCAACA+AGG - chr4_1:52602758-52602777 Msa0554870:intron 35.0%
! AGGATGTAGCAAATGCTTTT+CGG - chr4_1:52602778-52602797 Msa0554870:intron 35.0%
AAAGATTCTGAGTACTTAGC+AGG - chr4_1:52602807-52602826 Msa0554870:intron 35.0%
GTTGATATTTCTTGTTCGTC+TGG - chr4_1:52603170-52603189 Msa0554870:intron 35.0%
! GTAGGGATAATTTCAAGTGA+AGG - chr4_1:52603330-52603349 Msa0554870:intron 35.0%
! AATTTCAAGTGAAGGAATCC+TGG - chr4_1:52603338-52603357 Msa0554870:intron 35.0%
GATATGAAACACAGCCAAAA+TGG + chr4_1:52603382-52603401 None:intergenic 35.0%
TGTACATTAACGATGTGTCT+TGG - chr4_1:52603408-52603427 Msa0554870:intron 35.0%
GTACATTAACGATGTGTCTT+GGG - chr4_1:52603409-52603428 Msa0554870:intron 35.0%
!! TTTTAGTTGGAAGGGGATTA+AGG + chr4_1:52604433-52604452 None:intergenic 35.0%
TTTGACTCAGTTGACAAAGA+CGG - chr4_1:52604454-52604473 Msa0554870:intron 35.0%
!! TATTAAAAAGTACTGTGGGC+TGG - chr4_1:52604548-52604567 Msa0554870:intron 35.0%
!! ATTAAAAAGTACTGTGGGCT+GGG - chr4_1:52604549-52604568 Msa0554870:intron 35.0%
GCAATATCACATGTAAGGAA+TGG + chr4_1:52604582-52604601 None:intergenic 35.0%
ATCTTTCACAGATGAGAAGA+TGG - chr4_1:52604606-52604625 Msa0554870:intron 35.0%
!! GCAAGCGTCATTTTAAATTC+TGG - chr4_1:52604866-52604885 Msa0554870:intron 35.0%
ATAATTATTCTCCCTTGCTG+TGG - chr4_1:52604890-52604909 Msa0554870:intron 35.0%
!! TTTTGGGTACTTCAAACACA+TGG - chr4_1:52605141-52605160 Msa0554870:intron 35.0%
GATTACTTTGCTCTACGAAA+TGG - chr4_1:52605723-52605742 Msa0554870:intron 35.0%
TGCATGGTGGTTATACTTAT+TGG - chr4_1:52605808-52605827 Msa0554870:intron 35.0%
TATGGATGCAACCACAATTA+CGG - chr4_1:52605930-52605949 Msa0554870:intron 35.0%
!! TTACGACGAAGATTTTGAGA+AGG - chr4_1:52606188-52606207 Msa0554870:intron 35.0%
!! GAAGATTTTGAGAAGGTTGT+AGG - chr4_1:52606195-52606214 Msa0554870:intron 35.0%
!! CCAGATTGTTTAGTCTTGTA+TGG + chr4_1:52606409-52606428 None:intergenic 35.0%
CCATACAAGACTAAACAATC+TGG - chr4_1:52606406-52606425 Msa0554870:intron 35.0%
ATTGAAGATTGCTCTTCTTG+CGG - chr4_1:52606843-52606862 Msa0554870:intron 35.0%
ATTAAATGGAGAAGCCATTC+AGG + chr4_1:52606985-52607004 None:intergenic 35.0%
AATCCAAATCATCCTTATCC+AGG - chr4_1:52607002-52607021 Msa0554870:intron 35.0%
! TTGCATTTTTCACTTGGAGT+TGG - chr4_1:52607134-52607153 Msa0554870:intron 35.0%
! TGCATTTTTCACTTGGAGTT+GGG - chr4_1:52607135-52607154 Msa0554870:CDS 35.0%
AACAGTATGAATTTGGTCCA+AGG - chr4_1:52607261-52607280 Msa0554870:intron 35.0%
AAAAAGAGGACATTGCCATA+AGG - chr4_1:52607300-52607319 Msa0554870:intron 35.0%
ATTGCCATAAGGATTGCATT+GGG - chr4_1:52607311-52607330 Msa0554870:intron 35.0%
TAAACCCAATGCAATCCTTA+TGG + chr4_1:52607318-52607337 None:intergenic 35.0%
! TGTTTAAGGTTGTTATGAGG+TGG - chr4_1:52607442-52607461 Msa0554870:intron 35.0%
ATTAGGTCAAATCATTCGGA+TGG + chr4_1:52607671-52607690 None:intergenic 35.0%
AAAGCATGCATCGAAATAAG+TGG + chr4_1:52607721-52607740 None:intergenic 35.0%
TGCATGAAATTGTGACAGAT+GGG - chr4_1:52607782-52607801 Msa0554870:CDS 35.0%
! TTTTTAGACCTGGTGTAACA+TGG + chr4_1:52607838-52607857 None:intergenic 35.0%
!!! AACTGAGTTGTTGTTGCTTT+TGG + chr4_1:52607891-52607910 None:intergenic 35.0%
GAACAAGTGAGAATTCAGTA+AGG - chr4_1:52607924-52607943 Msa0554870:intron 35.0%
GAGTATGCTCAACAACAATA+AGG - chr4_1:52608084-52608103 Msa0554870:CDS 35.0%
TATGCTCAACAACAATAAGG+TGG - chr4_1:52608087-52608106 Msa0554870:CDS 35.0%
TCTTGAAGAAACCCCAACAT+GGG - chr4_1:52602142-52602161 Msa0554870:CDS 40.0%
GCATAAAATATGCAAGGTCC+AGG + chr4_1:52602552-52602571 None:intergenic 40.0%
TTGCTTCACAATAGTTCTCG+TGG + chr4_1:52602860-52602879 None:intergenic 40.0%
CGAGAACTATTGTGAAGCAA+AGG - chr4_1:52602860-52602879 Msa0554870:intron 40.0%
TTCACATCACACCTTCTCAA+AGG - chr4_1:52602921-52602940 Msa0554870:intron 40.0%
ATTAACGATGTGTCTTGGGA+AGG - chr4_1:52603413-52603432 Msa0554870:intron 40.0%
AAATGCTTGTATGGATGGGA+TGG + chr4_1:52604038-52604057 None:intergenic 40.0%
AGGGAAATGCTTGTATGGAT+GGG + chr4_1:52604042-52604061 None:intergenic 40.0%
GAATGAGGGAAATGCTTGTA+TGG + chr4_1:52604047-52604066 None:intergenic 40.0%
ACAAGCATTTCCCTCATTCA+AGG - chr4_1:52604048-52604067 Msa0554870:intron 40.0%
AGACGAAACTCCTTGAATGA+GGG + chr4_1:52604061-52604080 None:intergenic 40.0%
TACTAAGCTAGAGTACGGTA+GGG + chr4_1:52604178-52604197 None:intergenic 40.0%
!! TGGTTTGGTTAGAATGTAGG+TGG + chr4_1:52604256-52604275 None:intergenic 40.0%
!! AGGTGGTTTGGTTAGAATGT+AGG + chr4_1:52604259-52604278 None:intergenic 40.0%
GAGAAGATGGAAAAAATGGG+AGG - chr4_1:52604619-52604638 Msa0554870:intron 40.0%
AAGATGGAAAAAATGGGAGG+AGG - chr4_1:52604622-52604641 Msa0554870:intron 40.0%
TCACTTACAATCCACAGCAA+GGG + chr4_1:52604904-52604923 None:intergenic 40.0%
TTCACTTACAATCCACAGCA+AGG + chr4_1:52604905-52604924 None:intergenic 40.0%
CAACATGAAACTTCCTCACT+GGG - chr4_1:52605779-52605798 Msa0554870:intron 40.0%
AAAGATCGCAACCGTAATTG+TGG + chr4_1:52605944-52605963 None:intergenic 40.0%
ATTACGGTTGCGATCTTTGT+AGG - chr4_1:52605946-52605965 Msa0554870:intron 40.0%
TATTGGACCATGCTTCATTG+TGG - chr4_1:52606036-52606055 Msa0554870:intron 40.0%
CTTCATTGTGGTGCAATGTA+TGG - chr4_1:52606048-52606067 Msa0554870:intron 40.0%
AAAATCTTCGTCGTAAGTGC+GGG + chr4_1:52606184-52606203 None:intergenic 40.0%
CAAAATCTTCGTCGTAAGTG+CGG + chr4_1:52606185-52606204 None:intergenic 40.0%
TTGAGAAGGTTGTAGGAATC+AGG - chr4_1:52606202-52606221 Msa0554870:intron 40.0%
TTCATATTCCTTAGCGCACA+TGG - chr4_1:52606485-52606504 Msa0554870:intron 40.0%
GCTTCCATTTATTCCACTTG+TGG - chr4_1:52606705-52606724 Msa0554870:intron 40.0%
TTGAAGATTGCTCTTCTTGC+GGG - chr4_1:52606844-52606863 Msa0554870:intron 40.0%
GTATGGTTCCTTTGATCACA+GGG + chr4_1:52606924-52606943 None:intergenic 40.0%
AGTATGGTTCCTTTGATCAC+AGG + chr4_1:52606925-52606944 None:intergenic 40.0%
GTACCTGGATAAGGATGATT+TGG + chr4_1:52607008-52607027 None:intergenic 40.0%
TCTCTATTGAAGCAAGACCT+TGG + chr4_1:52607281-52607300 None:intergenic 40.0%
CATTGCCATAAGGATTGCAT+TGG - chr4_1:52607310-52607329 Msa0554870:intron 40.0%
TGAGTGACAAGTGTGTAAAG+GGG + chr4_1:52607374-52607393 None:intergenic 40.0%
CTGAGTGACAAGTGTGTAAA+GGG + chr4_1:52607375-52607394 None:intergenic 40.0%
!! GGTGATGCTTAGTTGATAGT+CGG - chr4_1:52607463-52607482 Msa0554870:intron 40.0%
ACTCTTCCGTTTCAATAGGA+AGG - chr4_1:52607564-52607583 Msa0554870:intron 40.0%
CTGCATGAAATTGTGACAGA+TGG - chr4_1:52607781-52607800 Msa0554870:CDS 40.0%
GCATGAAATTGTGACAGATG+GGG - chr4_1:52607783-52607802 Msa0554870:CDS 40.0%
AGGTGGAAAATGTCTCAGTA+AGG - chr4_1:52607984-52608003 Msa0554870:intron 40.0%
AATGGTAAGATCATCACCAG+AGG - chr4_1:52608271-52608290 Msa0554870:intron 40.0%
ATCACCAGAGGAATCTATGA+CGG - chr4_1:52608283-52608302 Msa0554870:intron 40.0%
!! ATCTCCTTTGGAGTGTATGT+GGG - chr4_1:52608310-52608329 Msa0554870:CDS 40.0%
CTCTTGAAGAAACCCCAACA+TGG - chr4_1:52602141-52602160 Msa0554870:CDS 45.0%
AAACTGAGACAGCCCATGTT+GGG + chr4_1:52602157-52602176 None:intergenic 45.0%
TGAAGGAGGTCTCCACAAAT+TGG - chr4_1:52602211-52602230 Msa0554870:CDS 45.0%
GAAAAGAAAGTCCATGGGGA+AGG - chr4_1:52602422-52602441 Msa0554870:CDS 45.0%
GAGGGAAATGCTTGTATGGA+TGG + chr4_1:52604043-52604062 None:intergenic 45.0%
GAGACGAAACTCCTTGAATG+AGG + chr4_1:52604062-52604081 None:intergenic 45.0%
GAGATCGGAAAGAACACCAA+TGG + chr4_1:52604119-52604138 None:intergenic 45.0%
ACTAAGCTAGAGTACGGTAG+GGG + chr4_1:52604177-52604196 None:intergenic 45.0%
CTACTAAGCTAGAGTACGGT+AGG + chr4_1:52604179-52604198 None:intergenic 45.0%
! TAGTTTTCACCACCTGTCCA+GGG - chr4_1:52604196-52604215 Msa0554870:intron 45.0%
CCAGTGAGGAAGTTTCATGT+TGG + chr4_1:52605781-52605800 None:intergenic 45.0%
CCAACATGAAACTTCCTCAC+TGG - chr4_1:52605778-52605797 Msa0554870:intron 45.0%
CATTGCACCACAATGAAGCA+TGG + chr4_1:52606046-52606065 None:intergenic 45.0%
!!! ACTCTTGCAGGTTTTGGATC+TGG - chr4_1:52606447-52606466 Msa0554870:intron 45.0%
ATGTCATACCATGTGCGCTA+AGG + chr4_1:52606496-52606515 None:intergenic 45.0%
TGAAGATTGCTCTTCTTGCG+GGG - chr4_1:52606845-52606864 Msa0554870:intron 45.0%
GGCTTTGCTTGCAACTATCT+AGG + chr4_1:52606903-52606922 None:intergenic 45.0%
AAGCAAAGCCCTGTGATCAA+AGG - chr4_1:52606913-52606932 Msa0554870:intron 45.0%
CCTGAGTGACAAGTGTGTAA+AGG + chr4_1:52607376-52607395 None:intergenic 45.0%
CCTTTACACACTTGTCACTC+AGG - chr4_1:52607373-52607392 Msa0554870:intron 45.0%
AGCGGTCCTTCCTATTGAAA+CGG + chr4_1:52607573-52607592 None:intergenic 45.0%
GATGGGGTCTAACATGAGAA+AGG - chr4_1:52607799-52607818 Msa0554870:CDS 45.0%
TATGACGGTGAGATCTCCTT+TGG - chr4_1:52608298-52608317 Msa0554870:CDS 45.0%
!! GATCTCCTTTGGAGTGTATG+TGG - chr4_1:52608309-52608328 Msa0554870:CDS 45.0%
ACTACCCACATACACTCCAA+AGG + chr4_1:52608317-52608336 None:intergenic 45.0%
TATGTGGGTAGTAGTAGCAG+AGG - chr4_1:52608325-52608344 Msa0554870:CDS 45.0%
! GTAGTAGTAGCAGAGGCATA+GGG - chr4_1:52608332-52608351 Msa0554870:CDS 45.0%
! TAGTAGTAGCAGAGGCATAG+GGG - chr4_1:52608333-52608352 Msa0554870:CDS 45.0%
!! TACAATTTATTATATTTAAA+GGG - chr4_1:52606770-52606789 Msa0554870:intron 5.0%
AACTGAGACAGCCCATGTTG+GGG + chr4_1:52602156-52602175 None:intergenic 50.0%
CAAACTGAGACAGCCCATGT+TGG + chr4_1:52602158-52602177 None:intergenic 50.0%
AGGTCTCCACAAATTGGCTG+AGG - chr4_1:52602217-52602236 Msa0554870:CDS 50.0%
TTTGGTCAAAGCCTTCCCCA+TGG + chr4_1:52602436-52602455 None:intergenic 50.0%
TTATGATCGCCTGTGAGTGC+AGG - chr4_1:52603302-52603321 Msa0554870:intron 50.0%
TATGATCGCCTGTGAGTGCA+GGG - chr4_1:52603303-52603322 Msa0554870:intron 50.0%
GATGTGTCTTGGGAAGGCTA+AGG - chr4_1:52603419-52603438 Msa0554870:intron 50.0%
!! AATGGCGAAAGCACTCTGCT+GGG + chr4_1:52604101-52604120 None:intergenic 50.0%
GCGATGAAATGCGCAGAGAT+CGG + chr4_1:52604134-52604153 None:intergenic 50.0%
! GTAGTTTTCACCACCTGTCC+AGG - chr4_1:52604195-52604214 Msa0554870:intron 50.0%
AAGTTCGCCGTCAAATCCCA+GGG + chr4_1:52604227-52604246 None:intergenic 50.0%
TAAGTTCGCCGTCAAATCCC+AGG + chr4_1:52604228-52604247 None:intergenic 50.0%
CCATGCATGAAATCCCAGTG+AGG + chr4_1:52605795-52605814 None:intergenic 50.0%
CCTCACTGGGATTTCATGCA+TGG - chr4_1:52605792-52605811 Msa0554870:intron 50.0%
CACTGGGATTTCATGCATGG+TGG - chr4_1:52605795-52605814 Msa0554870:intron 50.0%
GTGGTACGCAGTTGCAATTG+TGG + chr4_1:52605997-52606016 None:intergenic 50.0%
TTCACGGACCATGTTACACC+AGG - chr4_1:52607827-52607846 Msa0554870:intron 50.0%
CTTCCAGAGTTGTTACCAGG+AGG + chr4_1:52608160-52608179 None:intergenic 50.0%
CCACTTCCAGAGTTGTTACC+AGG + chr4_1:52608163-52608182 None:intergenic 50.0%
! CCTGGTAACAACTCTGGAAG+TGG - chr4_1:52608160-52608179 Msa0554870:intron 50.0%
! CAACTCTGGAAGTGGAGAAG+AGG - chr4_1:52608168-52608187 Msa0554870:intron 50.0%
CTCACCGTCATAGATTCCTC+TGG + chr4_1:52608290-52608309 None:intergenic 50.0%
! GGTAGTAGTAGCAGAGGCAT+AGG - chr4_1:52608331-52608350 Msa0554870:CDS 50.0%
TGTGAGTGCAGGGCAAGGTA+GGG - chr4_1:52603313-52603332 Msa0554870:intron 55.0%
TCGTCTCTCAGTGTCAGCGT+CGG - chr4_1:52604075-52604094 Msa0554870:intron 55.0%
!! CAATGGCGAAAGCACTCTGC+TGG + chr4_1:52604102-52604121 None:intergenic 55.0%
! CAGCAGAGTGCTTTCGCCAT+TGG - chr4_1:52604100-52604119 Msa0554870:intron 55.0%
TGCGCATTTCATCGCTCCAC+CGG - chr4_1:52604139-52604158 Msa0554870:intron 55.0%
GTAGGGGCAGAGGGAATTTC+CGG + chr4_1:52604161-52604180 None:intergenic 55.0%
TAGAGTACGGTAGGGGCAGA+GGG + chr4_1:52604170-52604189 None:intergenic 55.0%
GGTTGAGCCCTGGGATTTGA+CGG - chr4_1:52604217-52604236 Msa0554870:intron 55.0%
! GTAGTGACTAGTCCTCCTCC+TGG - chr4_1:52608142-52608161 Msa0554870:intron 55.0%
CCAGAGTTGTTACCAGGAGG+AGG + chr4_1:52608157-52608176 None:intergenic 55.0%
CCTCCTCCTGGTAACAACTC+TGG - chr4_1:52608154-52608173 Msa0554870:intron 55.0%
CAAGGTCCAGGGTTCGAACC+CGG + chr4_1:52602540-52602559 None:intergenic 60.0%
CTACCTTGCCCTGCACTCAC+AGG + chr4_1:52603314-52603333 None:intergenic 60.0%
CTGTGAGTGCAGGGCAAGGT+AGG - chr4_1:52603312-52603331 Msa0554870:intron 60.0%
CTAGAGTACGGTAGGGGCAG+AGG + chr4_1:52604171-52604190 None:intergenic 60.0%
CAAATCCCAGGGCTCAACCC+TGG + chr4_1:52604216-52604235 None:intergenic 60.0%
TCGCCTGTGAGTGCAGGGCA+AGG - chr4_1:52603308-52603327 Msa0554870:intron 65.0%
GGGGCAGAGGGAATTTCCGG+TGG + chr4_1:52604158-52604177 None:intergenic 65.0%
AGGGCTCAACCCTGGACAGG+TGG + chr4_1:52604208-52604227 None:intergenic 65.0%
ACCTGTCCAGGGTTGAGCCC+TGG - chr4_1:52604207-52604226 Msa0554870:intron 65.0%
CCTGTCCAGGGTTGAGCCCT+GGG - chr4_1:52604208-52604227 Msa0554870:intron 65.0%
TGGTGGCCGGGTTCGAACCC+TGG - chr4_1:52602531-52602550 Msa0554870:CDS 70.0%
CCCAGGGCTCAACCCTGGAC+AGG + chr4_1:52604211-52604230 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 52602116 52608408 52602116 ID=Msa0554870;Name=Msa0554870
chr4_1 mRNA 52602116 52608408 52602116 ID=Msa0554870-mRNA-1;Parent=Msa0554870;Name=Msa0554870-mRNA-1;_AED=0.16;_eAED=0.17;_QI=0|0|0|1|0.72|0.83|12|0|497
chr4_1 exon 52608286 52608408 52608286 ID=Msa0554870-mRNA-1:exon:15262;Parent=Msa0554870-mRNA-1
chr4_1 exon 52608059 52608116 52608059 ID=Msa0554870-mRNA-1:exon:15261;Parent=Msa0554870-mRNA-1
chr4_1 exon 52607643 52607821 52607643 ID=Msa0554870-mRNA-1:exon:15260;Parent=Msa0554870-mRNA-1
chr4_1 exon 52607135 52607200 52607135 ID=Msa0554870-mRNA-1:exon:15259;Parent=Msa0554870-mRNA-1
chr4_1 exon 52605847 52605907 52605847 ID=Msa0554870-mRNA-1:exon:15258;Parent=Msa0554870-mRNA-1
chr4_1 exon 52604769 52604812 52604769 ID=Msa0554870-mRNA-1:exon:15257;Parent=Msa0554870-mRNA-1
chr4_1 exon 52604301 52604395 52604301 ID=Msa0554870-mRNA-1:exon:15256;Parent=Msa0554870-mRNA-1
chr4_1 exon 52604018 52604025 52604018 ID=Msa0554870-mRNA-1:exon:15255;Parent=Msa0554870-mRNA-1
chr4_1 exon 52603798 52603838 52603798 ID=Msa0554870-mRNA-1:exon:15254;Parent=Msa0554870-mRNA-1
chr4_1 exon 52603501 52603674 52603501 ID=Msa0554870-mRNA-1:exon:15253;Parent=Msa0554870-mRNA-1
chr4_1 exon 52603368 52603403 52603368 ID=Msa0554870-mRNA-1:exon:15252;Parent=Msa0554870-mRNA-1
chr4_1 exon 52602116 52602724 52602116 ID=Msa0554870-mRNA-1:exon:15251;Parent=Msa0554870-mRNA-1
chr4_1 CDS 52608286 52608408 52608286 ID=Msa0554870-mRNA-1:cds;Parent=Msa0554870-mRNA-1
chr4_1 CDS 52608059 52608116 52608059 ID=Msa0554870-mRNA-1:cds;Parent=Msa0554870-mRNA-1
chr4_1 CDS 52607643 52607821 52607643 ID=Msa0554870-mRNA-1:cds;Parent=Msa0554870-mRNA-1
chr4_1 CDS 52607135 52607200 52607135 ID=Msa0554870-mRNA-1:cds;Parent=Msa0554870-mRNA-1
chr4_1 CDS 52605847 52605907 52605847 ID=Msa0554870-mRNA-1:cds;Parent=Msa0554870-mRNA-1
chr4_1 CDS 52604769 52604812 52604769 ID=Msa0554870-mRNA-1:cds;Parent=Msa0554870-mRNA-1
chr4_1 CDS 52604301 52604395 52604301 ID=Msa0554870-mRNA-1:cds;Parent=Msa0554870-mRNA-1
chr4_1 CDS 52604018 52604025 52604018 ID=Msa0554870-mRNA-1:cds;Parent=Msa0554870-mRNA-1
chr4_1 CDS 52603798 52603838 52603798 ID=Msa0554870-mRNA-1:cds;Parent=Msa0554870-mRNA-1
chr4_1 CDS 52603501 52603674 52603501 ID=Msa0554870-mRNA-1:cds;Parent=Msa0554870-mRNA-1
chr4_1 CDS 52603368 52603403 52603368 ID=Msa0554870-mRNA-1:cds;Parent=Msa0554870-mRNA-1
chr4_1 CDS 52602116 52602724 52602116 ID=Msa0554870-mRNA-1:cds;Parent=Msa0554870-mRNA-1
Gene Sequence

>Msa0554870

ATGGCCATAGAAGGAGAACAAAGATCTCTTGAAGAAACCCCAACATGGGCTGTCTCAGTTTGTTGCTTCTTTGTCCTTGTTATATCATTGCTCATTGAAGGAGGTCTCCACAAATTGGCTGAGTTTTTGAGGAAAAAGAAAAGAAAGTCCATGGGGAAGGCTTTGACCAAAACTAAAACAGAAATGATGAAACTCGGTTTCGTGTCATTTCTTCTGACAATATCGGAAGTGCCAATGTCCAAAATTTGCATCAACAAGGATGTAGCAAATGCTTTTCGGCCATGTAAAGATTCTGAGTACTTAGCAGGTGATCATGCAAGAAAAGAATTGGGATACCACGAGAACTATTGTGAAGCAAAGGGCAAGGTAGGGATAATTTCAAGTGAAGGAATCCTGGAGCTAAATATCTTAATCTCCATTTTGGCTATGAGAAGATGGAAAAAATGGGAGGAGGAGACTCAAACACTTGAATATCAGATAGACAATGTCTCAAAAGATGATTACTTTGCTCTACGAAATGGGTTCATTGCAAAAAATATTTCTGAAGGCAGCAATTTTAATTTCAACTTCAAGAAATTTCTTTCCCGCACTTACGACGAAGATTTTGAGAAGGTTGTAGGAATCAGCGCACATGAGTTTTATAATTACTACTGGCTTCCATTTATTCCACTTGTGATTGCTCTTCTTGCGGGGACTAAACTGCAAGTGATAATAACAAAGATGCACCTAGATAGTTGCAAGCAAAGCCCTGTGATCAAAGGAACCATACTTGTAAAACCAAGTGATGAATATTTTTGGTTTCATAAACCTGAATGGCTTCTCCATTTAATCCAAATCATCCTTATCCAGAACTCCTTTCAACTTGCATTTTTCACTTGGAGTTGGATGGGGTCTAACATGAGAAAGGAAATTTTCACGGACCATGTTACACCAGGTCTAAAAAATTGGCATAAAAAGGCTAAGCAATCTCTTTCCAAAAGCAACAACAACTCAGTTTCTTTACATTCAAGAACAAGTGAGAATTCAGTAAGGAGATCTTTATCTATAGAGAGTATGCACAATAATAATAAGGTGGAAAATGTCTCAGTAAGGAGATCTTTATCTATAGAGAGTATGCACGATAATAATAAGGTGGAAAATGTCTCAGTAAGAAGATCTTTATCTATAGAGAGTATGCTCAACAACAATAAGGTGGAAAATGAAGACATGCAATCACCAAAAGTAATAGTAGTGACTAGTCCTCCTCCTGGTAACAACTCTGGAAGTGGAGAAGAGGAAGAGATTGTTAATGTAGCAAGTGTTGAGCAAGAGATATCAAGTGAATCCACTTCAGAAATTAAGACTGTTGAGGAAAATAATGGTAAGATCATCACCAGAGGAATCTATGACGGTGAGATCTCCTTTGGAGTGTATGTGGGTAGTAGTAGCAGAGGCATAGGGGAAATTGTTTCAATAGCTGAAGAAGAAGATGATGACACCAGTGATAAAAATTAA

Protein sequence

>Msa0554870

MAIEGEQRSLEETPTWAVSVCCFFVLVISLLIEGGLHKLAEFLRKKKRKSMGKALTKTKTEMMKLGFVSFLLTISEVPMSKICINKDVANAFRPCKDSEYLAGDHARKELGYHENYCEAKGKVGIISSEGILELNILISILAMRRWKKWEEETQTLEYQIDNVSKDDYFALRNGFIAKNISEGSNFNFNFKKFLSRTYDEDFEKVVGISAHEFYNYYWLPFIPLVIALLAGTKLQVIITKMHLDSCKQSPVIKGTILVKPSDEYFWFHKPEWLLHLIQIILIQNSFQLAFFTWSWMGSNMRKEIFTDHVTPGLKNWHKKAKQSLSKSNNNSVSLHSRTSENSVRRSLSIESMHNNNKVENVSVRRSLSIESMHDNNKVENVSVRRSLSIESMLNNNKVENEDMQSPKVIVVTSPPPGNNSGSGEEEEIVNVASVEQEISSESTSEIKTVEENNGKIITRGIYDGEISFGVYVGSSSRGIGEIVSIAEEEDDDTSDKN*