Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0554870 | XP_003607521.1 | 72.204 | 608 | 13 | 6 | 4 | 497 | 3 | 568 | 0.0 | 794 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0554870 | sp|O80961|MLO12_ARATH | 31.127 | 559 | 227 | 11 | 1 | 406 | 1 | 554 | 6.06e-81 | 265 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0554870 | G7JUX8 | 72.204 | 608 | 13 | 6 | 4 | 497 | 3 | 568 | 0.0 | 794 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0554870 | Msa0691460 | 0.869435 | 3.102234e-66 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0554870 | MtrunA17_Chr4g0040611 | 72.204 | 608 | 13 | 6 | 4 | 497 | 3 | 568 | 0.0 | 794 |
Msa0554870 | MtrunA17_Chr6g0462051 | 34.681 | 470 | 170 | 7 | 7 | 339 | 8 | 477 | 2.60e-84 | 271 |
Msa0554870 | MtrunA17_Chr2g0326301 | 31.185 | 574 | 233 | 12 | 1 | 416 | 1 | 570 | 1.49e-74 | 246 |
Msa0554870 | MtrunA17_Chr3g0144171 | 30.591 | 474 | 195 | 8 | 7 | 348 | 8 | 479 | 2.50e-67 | 226 |
Msa0554870 | MtrunA17_Chr2g0291441 | 36.074 | 377 | 153 | 11 | 1 | 295 | 1 | 371 | 1.24e-63 | 214 |
Msa0554870 | MtrunA17_Chr8g0370181 | 30.493 | 446 | 179 | 8 | 5 | 322 | 35 | 477 | 4.80e-63 | 215 |
Msa0554870 | MtrunA17_Chr5g0407381 | 29.151 | 518 | 219 | 10 | 8 | 380 | 28 | 542 | 4.47e-62 | 212 |
Msa0554870 | MtrunA17_Chr8g0337941 | 28.543 | 494 | 199 | 11 | 8 | 352 | 12 | 500 | 5.63e-58 | 200 |
Msa0554870 | MtrunA17_Chr3g0145831 | 28.859 | 447 | 177 | 8 | 9 | 316 | 13 | 457 | 2.41e-55 | 193 |
Msa0554870 | MtrunA17_Chr8g0337931 | 28.785 | 469 | 179 | 12 | 26 | 341 | 15 | 481 | 1.58e-49 | 177 |
Msa0554870 | MtrunA17_Chr3g0144201 | 25.755 | 497 | 185 | 9 | 6 | 320 | 9 | 503 | 2.08e-45 | 167 |
Msa0554870 | MtrunA17_Chr2g0317801 | 30.688 | 378 | 168 | 12 | 6 | 295 | 7 | 378 | 5.04e-43 | 160 |
Msa0554870 | MtrunA17_Chr5g0405641 | 27.344 | 384 | 179 | 9 | 6 | 294 | 8 | 386 | 3.19e-25 | 107 |
Msa0554870 | MtrunA17_Chr2g0277471 | 27.632 | 304 | 144 | 11 | 162 | 406 | 237 | 523 | 2.06e-23 | 103 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0554870 | AT2G39200.1 | 31.127 | 559 | 227 | 11 | 1 | 406 | 1 | 554 | 6.16e-82 | 265 |
Msa0554870 | AT1G61560.4 | 31.549 | 523 | 199 | 10 | 1 | 376 | 1 | 511 | 5.11e-80 | 260 |
Msa0554870 | AT1G61560.1 | 31.549 | 523 | 199 | 10 | 1 | 376 | 1 | 511 | 6.31e-80 | 260 |
Msa0554870 | AT1G11310.1 | 32.411 | 506 | 196 | 8 | 1 | 360 | 1 | 506 | 1.32e-78 | 256 |
Msa0554870 | AT1G61560.6 | 35.787 | 394 | 150 | 6 | 1 | 294 | 1 | 391 | 3.05e-77 | 248 |
Msa0554870 | AT1G61560.8 | 35.787 | 394 | 150 | 6 | 1 | 294 | 1 | 391 | 3.05e-77 | 248 |
Msa0554870 | AT1G61560.5 | 35.787 | 394 | 150 | 6 | 1 | 294 | 1 | 391 | 3.05e-77 | 248 |
Msa0554870 | AT1G61560.7 | 35.787 | 394 | 150 | 6 | 1 | 294 | 1 | 391 | 3.88e-77 | 248 |
Msa0554870 | AT1G61560.9 | 35.787 | 394 | 150 | 6 | 1 | 294 | 1 | 391 | 3.88e-77 | 248 |
Msa0554870 | AT1G61560.10 | 35.787 | 394 | 150 | 6 | 1 | 294 | 1 | 391 | 8.67e-77 | 248 |
Msa0554870 | AT1G11310.2 | 35.787 | 394 | 153 | 5 | 1 | 294 | 1 | 394 | 5.99e-76 | 245 |
Msa0554870 | AT4G02600.2 | 30.819 | 464 | 177 | 10 | 1 | 322 | 1 | 462 | 2.38e-59 | 204 |
Msa0554870 | AT4G02600.1 | 30.819 | 464 | 177 | 10 | 1 | 322 | 1 | 462 | 2.38e-59 | 204 |
Msa0554870 | AT1G61560.2 | 30.217 | 460 | 164 | 11 | 63 | 376 | 1 | 449 | 2.29e-58 | 201 |
Msa0554870 | AT1G61560.3 | 30.217 | 460 | 164 | 11 | 63 | 376 | 1 | 449 | 2.29e-58 | 201 |
Msa0554870 | AT1G11310.3 | 30.856 | 444 | 161 | 8 | 63 | 360 | 1 | 444 | 4.92e-57 | 197 |
Msa0554870 | AT2G17430.1 | 30.575 | 435 | 179 | 8 | 8 | 321 | 31 | 463 | 6.10e-57 | 198 |
Msa0554870 | AT3G45290.1 | 31.892 | 370 | 167 | 6 | 5 | 293 | 14 | 379 | 8.44e-57 | 197 |
Msa0554870 | AT2G17480.1 | 29.157 | 439 | 180 | 7 | 7 | 316 | 38 | 474 | 2.61e-56 | 197 |
Msa0554870 | AT2G44110.1 | 27.557 | 479 | 213 | 9 | 3 | 352 | 1 | 474 | 2.89e-54 | 190 |
Msa0554870 | AT2G44110.2 | 27.500 | 480 | 213 | 9 | 3 | 352 | 1 | 475 | 4.10e-54 | 189 |
Msa0554870 | AT2G33670.1 | 28.082 | 438 | 189 | 7 | 8 | 322 | 15 | 449 | 2.76e-53 | 187 |
Msa0554870 | AT5G65970.1 | 29.371 | 429 | 185 | 6 | 5 | 317 | 31 | 457 | 3.79e-53 | 189 |
Msa0554870 | AT4G24250.2 | 31.135 | 379 | 169 | 7 | 4 | 293 | 3 | 378 | 4.04e-48 | 171 |
Msa0554870 | AT4G24250.1 | 31.135 | 379 | 169 | 7 | 4 | 293 | 3 | 378 | 5.94e-48 | 172 |
Msa0554870 | AT5G65970.2 | 30.000 | 340 | 163 | 5 | 5 | 271 | 31 | 368 | 1.89e-45 | 166 |
Msa0554870 | AT1G42560.1 | 27.865 | 445 | 189 | 9 | 8 | 322 | 14 | 456 | 2.50e-44 | 162 |
Msa0554870 | AT1G26700.1 | 29.275 | 386 | 174 | 11 | 4 | 295 | 6 | 386 | 7.29e-44 | 163 |
Msa0554870 | AT1G26700.2 | 29.275 | 386 | 174 | 11 | 4 | 295 | 6 | 386 | 7.29e-44 | 163 |
Msa0554870 | AT5G53760.2 | 28.646 | 384 | 178 | 9 | 4 | 295 | 12 | 391 | 8.20e-44 | 163 |
Msa0554870 | AT5G53760.1 | 28.646 | 384 | 178 | 9 | 4 | 295 | 12 | 391 | 8.20e-44 | 163 |
Msa0554870 | AT1G11000.1 | 28.499 | 393 | 186 | 10 | 6 | 309 | 7 | 393 | 4.96e-37 | 144 |
Msa0554870 | AT1G11000.3 | 28.499 | 393 | 186 | 10 | 6 | 309 | 7 | 393 | 4.96e-37 | 144 |
Msa0554870 | AT1G42560.2 | 29.752 | 363 | 166 | 8 | 8 | 283 | 14 | 374 | 1.54e-36 | 139 |
Msa0554870 | AT1G11000.2 | 28.316 | 392 | 188 | 9 | 6 | 309 | 7 | 393 | 3.41e-36 | 139 |
Find 90 sgRNAs with CRISPR-Local
Find 346 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCCTTGTTGATGCAAATTT+TGG | 0.107483 | 4_1:+52607742 | None:intergenic |
TAAGGATGATTTGGATTAAA+TGG | 0.181806 | 4_1:+52603506 | None:intergenic |
AAATATCTTAATCTCCATTT+TGG | 0.201941 | 4_1:-52607137 | Msa0554870:CDS |
AACTGAGTTGTTGTTGCTTT+TGG | 0.224442 | 4_1:+52602614 | None:intergenic |
TTTACCACAAGTGGAATAAA+TGG | 0.270886 | 4_1:+52603793 | None:intergenic |
AGATCTTTGTTCTCCTTCTA+TGG | 0.274984 | 4_1:+52608382 | None:intergenic |
TTGAAGATTGCTCTTCTTGC+GGG | 0.303473 | 4_1:-52603658 | Msa0554870:intron |
GATATGAAACACAGCCAAAA+TGG | 0.307125 | 4_1:+52607123 | None:intergenic |
TGATCATGCAAGAAAAGAAT+TGG | 0.326385 | 4_1:-52607672 | Msa0554870:CDS |
TTGAGAAGGTTGTAGGAATC+AGG | 0.332335 | 4_1:-52604300 | Msa0554870:intron |
GTACCTGGATAAGGATGATT+TGG | 0.341935 | 4_1:+52603497 | None:intergenic |
GATTACTTTGCTCTACGAAA+TGG | 0.343568 | 4_1:-52604779 | Msa0554870:CDS |
ATTAAATGGAGAAGCCATTC+AGG | 0.350449 | 4_1:+52603520 | None:intergenic |
GTCATTTCTTCTGACAATAT+CGG | 0.352637 | 4_1:-52607777 | Msa0554870:CDS |
CTAGTCACTACTATTACTTT+TGG | 0.384195 | 4_1:+52602372 | None:intergenic |
GAGTATGCACAATAATAATA+AGG | 0.384959 | 4_1:-52602538 | Msa0554870:CDS |
GAGTATGCACGATAATAATA+AGG | 0.399771 | 4_1:-52602478 | Msa0554870:CDS |
TGAAGGAGGTCTCCACAAAT+TGG | 0.400561 | 4_1:-52608291 | Msa0554870:CDS |
GTTATATCATTGCTCATTGA+AGG | 0.402100 | 4_1:-52608308 | Msa0554870:CDS |
AAGACTGTTGAGGAAAATAA+TGG | 0.404778 | 4_1:-52602249 | Msa0554870:CDS |
TAATTACCTCAGCCAATTTG+TGG | 0.407648 | 4_1:+52608279 | None:intergenic |
CCACTTCCAGAGTTGTTACC+AGG | 0.412305 | 4_1:+52602342 | None:intergenic |
AAACCTCTCATGGCCATAGA+AGG | 0.415078 | 4_1:-52608395 | None:intergenic |
GGCTTTGCTTGCAACTATCT+AGG | 0.416507 | 4_1:+52603602 | None:intergenic |
ATTACTTTGCTCTACGAAAT+GGG | 0.431916 | 4_1:-52604778 | Msa0554870:CDS |
AAACTGAGACAGCCCATGTT+GGG | 0.433884 | 4_1:+52608348 | None:intergenic |
GAGTATGCTCAACAACAATA+AGG | 0.436327 | 4_1:-52602418 | Msa0554870:CDS |
TATGACGGTGAGATCTCCTT+TGG | 0.443120 | 4_1:-52602204 | Msa0554870:CDS |
GCTTTGACCAAAACTAAAAC+AGG | 0.444591 | 4_1:-52608058 | Msa0554870:intron |
TTTGGTTTCATAAACCTGAA+TGG | 0.459950 | 4_1:-52603534 | Msa0554870:CDS |
CTGTGAGTGCAGGGCAAGGT+AGG | 0.461307 | 4_1:-52607190 | Msa0554870:intron |
AACAGTCTTAATTTCTGAAG+TGG | 0.475304 | 4_1:+52602263 | None:intergenic |
AAAATCTTCGTCGTAAGTGC+GGG | 0.479119 | 4_1:+52604321 | None:intergenic |
AGATTAAGATATTTAGCTCC+AGG | 0.480755 | 4_1:+52607146 | None:intergenic |
GGTAGTAGTAGCAGAGGCAT+AGG | 0.481563 | 4_1:-52602171 | Msa0554870:CDS |
GATCATGCAAGAAAAGAATT+GGG | 0.482157 | 4_1:-52607671 | Msa0554870:CDS |
ATCTTTCACAGATGAGAAGA+TGG | 0.492186 | 4_1:-52605896 | Msa0554870:intron |
AATCCAAATCATCCTTATCC+AGG | 0.494454 | 4_1:-52603500 | Msa0554870:intron |
AATTTCAAGTGAAGGAATCC+TGG | 0.501929 | 4_1:-52607164 | Msa0554870:CDS |
GATCTCCTTTGGAGTGTATG+TGG | 0.505690 | 4_1:-52602193 | Msa0554870:CDS |
TTCATATTCCTTAGCGCACA+TGG | 0.505852 | 4_1:-52604017 | Msa0554870:intron |
CCTGGTAACAACTCTGGAAG+TGG | 0.506889 | 4_1:-52602342 | Msa0554870:CDS |
AGTATGGTTCCTTTGATCAC+AGG | 0.507864 | 4_1:+52603580 | None:intergenic |
ATTGAAGATTGCTCTTCTTG+CGG | 0.519046 | 4_1:-52603659 | Msa0554870:intron |
CAAAATCTTCGTCGTAAGTG+CGG | 0.522068 | 4_1:+52604320 | None:intergenic |
GATATGAAATTTACCACAAG+TGG | 0.523559 | 4_1:+52603784 | None:intergenic |
AAAGATTCTGAGTACTTAGC+AGG | 0.531068 | 4_1:-52607695 | Msa0554870:CDS |
GTAGTAGTAGCAGAGGCATA+GGG | 0.538522 | 4_1:-52602170 | Msa0554870:CDS |
GCTTCCATTTATTCCACTTG+TGG | 0.539948 | 4_1:-52603797 | Msa0554870:intron |
CCTCCTCCTGGTAACAACTC+TGG | 0.540953 | 4_1:-52602348 | Msa0554870:CDS |
CTCTTGAAGAAACCCCAACA+TGG | 0.546661 | 4_1:-52608361 | Msa0554870:CDS |
AGGTGGAAAATGTCTCAGTA+AGG | 0.554389 | 4_1:-52602518 | Msa0554870:CDS |
GATGGGGTCTAACATGAGAA+AGG | 0.555306 | 4_1:-52602703 | Msa0554870:CDS |
CTCACCGTCATAGATTCCTC+TGG | 0.557735 | 4_1:+52602215 | None:intergenic |
CAAACTGAGACAGCCCATGT+TGG | 0.568515 | 4_1:+52608347 | None:intergenic |
TTCAGAAATTAAGACTGTTG+AGG | 0.569497 | 4_1:-52602259 | Msa0554870:CDS |
TTCACGGACCATGTTACACC+AGG | 0.571724 | 4_1:-52602675 | Msa0554870:CDS |
GTATGGTTCCTTTGATCACA+GGG | 0.572250 | 4_1:+52603581 | None:intergenic |
GAACAAGTGAGAATTCAGTA+AGG | 0.572786 | 4_1:-52602578 | Msa0554870:CDS |
GTAGTGACTAGTCCTCCTCC+TGG | 0.573389 | 4_1:-52602360 | Msa0554870:CDS |
TGTGAGTGCAGGGCAAGGTA+GGG | 0.573706 | 4_1:-52607189 | Msa0554870:intron |
CCAGAGTTGTTACCAGGAGG+AGG | 0.576377 | 4_1:+52602348 | None:intergenic |
AAGCAAAGCCCTGTGATCAA+AGG | 0.576388 | 4_1:-52603589 | Msa0554870:CDS |
GTAGGGATAATTTCAAGTGA+AGG | 0.579816 | 4_1:-52607172 | Msa0554870:CDS |
CAACTCTGGAAGTGGAGAAG+AGG | 0.584996 | 4_1:-52602334 | Msa0554870:CDS |
TTGCTTCACAATAGTTCTCG+TGG | 0.588634 | 4_1:+52607645 | None:intergenic |
TGAAGATTGCTCTTCTTGCG+GGG | 0.590863 | 4_1:-52603657 | Msa0554870:intron |
GAAAAGAAAGTCCATGGGGA+AGG | 0.592636 | 4_1:-52608080 | Msa0554870:CDS |
ATCTCCTTTGGAGTGTATGT+GGG | 0.593287 | 4_1:-52602192 | Msa0554870:CDS |
TTTGGTCAAAGCCTTCCCCA+TGG | 0.601512 | 4_1:+52608069 | None:intergenic |
AACTGAGACAGCCCATGTTG+GGG | 0.609015 | 4_1:+52608349 | None:intergenic |
TATGTGGGTAGTAGTAGCAG+AGG | 0.612540 | 4_1:-52602177 | Msa0554870:CDS |
AGGTCTCCACAAATTGGCTG+AGG | 0.613365 | 4_1:-52608285 | Msa0554870:intron |
ATATCATTGCTCATTGAAGG+AGG | 0.616291 | 4_1:-52608305 | Msa0554870:CDS |
CAATGAGCAATGATATAACA+AGG | 0.619401 | 4_1:+52608312 | None:intergenic |
TCTTGAAGAAACCCCAACAT+GGG | 0.624163 | 4_1:-52608360 | Msa0554870:CDS |
TAGTAGTAGCAGAGGCATAG+GGG | 0.625440 | 4_1:-52602169 | Msa0554870:CDS |
CGAGAACTATTGTGAAGCAA+AGG | 0.626303 | 4_1:-52607642 | Msa0554870:intron |
TATGCACGATAATAATAAGG+TGG | 0.626838 | 4_1:-52602475 | Msa0554870:CDS |
TATGCACAATAATAATAAGG+TGG | 0.626838 | 4_1:-52602535 | Msa0554870:CDS |
AAGTACTCAGAATCTTTACA+TGG | 0.627255 | 4_1:+52607701 | None:intergenic |
GTCCAAAATTTGCATCAACA+AGG | 0.628409 | 4_1:-52607744 | Msa0554870:CDS |
CTTGAATATCAGATAGACAA+TGG | 0.634126 | 4_1:-52605846 | Msa0554870:intron |
TATGCTCAACAACAATAAGG+TGG | 0.634436 | 4_1:-52602415 | Msa0554870:CDS |
AAAATAGAAATGATGAAACT+CGG | 0.643405 | 4_1:-52607806 | Msa0554870:intron |
ACTACCCACATACACTCCAA+AGG | 0.653190 | 4_1:+52602188 | None:intergenic |
ATCACCAGAGGAATCTATGA+CGG | 0.655023 | 4_1:-52602219 | Msa0554870:CDS |
CTTCCAGAGTTGTTACCAGG+AGG | 0.684826 | 4_1:+52602345 | None:intergenic |
AATGGTAAGATCATCACCAG+AGG | 0.694073 | 4_1:-52602231 | Msa0554870:CDS |
AAAAGAAAAGAAAGTCCATG+GGG | 0.725165 | 4_1:-52608084 | Msa0554870:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTACCTTTTTTTTTTTTTT+TGG | - | chr4_1:52602511-52602530 | Msa0554870:CDS | 10.0% |
!!! | GATTTTTTTAATATGTAAAT+CGG | - | chr4_1:52603048-52603067 | Msa0554870:intron | 10.0% |
!!! | CAAAAATAGTTTTATATTTT+TGG | + | chr4_1:52603736-52603755 | None:intergenic | 10.0% |
!!! | TATTTTTGAACTTTTTAAAT+TGG | + | chr4_1:52605249-52605268 | None:intergenic | 10.0% |
!! | TTTAAAAAGTTCAAAAATAT+AGG | - | chr4_1:52605250-52605269 | Msa0554870:intron | 10.0% |
!! | TTAAAAAGTTCAAAAATATA+GGG | - | chr4_1:52605251-52605270 | Msa0554870:intron | 10.0% |
!!! | TATATGATAGAATTTTTTTT+AGG | + | chr4_1:52605483-52605502 | None:intergenic | 10.0% |
!! | ATTGTCAAATTTATTATTTA+TGG | - | chr4_1:52605855-52605874 | Msa0554870:CDS | 10.0% |
!! | GTACAATTTATTATATTTAA+AGG | - | chr4_1:52606769-52606788 | Msa0554870:intron | 10.0% |
!! | ATTACTAATGAATATTATAT+TGG | - | chr4_1:52607171-52607190 | Msa0554870:CDS | 10.0% |
!!! | TTTTTATTTAAAAAGTGATG+AGG | - | chr4_1:52602597-52602616 | Msa0554870:CDS | 15.0% |
!!! | AATTATTAGCTTAATTAAGT+TGG | - | chr4_1:52602660-52602679 | Msa0554870:CDS | 15.0% |
!! | AAATAAATATGACTAAACTA+CGG | + | chr4_1:52603022-52603041 | None:intergenic | 15.0% |
!! | AATAAAAATAAAAACAGACA+AGG | + | chr4_1:52603114-52603133 | None:intergenic | 15.0% |
!! | AATGTTAGTTAATAATTGTT+AGG | - | chr4_1:52603148-52603167 | Msa0554870:intron | 15.0% |
!!! | TTACTTTTAGTTTTTTTTAG+TGG | + | chr4_1:52603699-52603718 | None:intergenic | 15.0% |
!!! | ATAATATAAAAGTATATACG+TGG | + | chr4_1:52603860-52603879 | None:intergenic | 15.0% |
!! | GAAGAAATAAAATAATTGAT+GGG | + | chr4_1:52604311-52604330 | None:intergenic | 15.0% |
!! | TGAAGAAATAAAATAATTGA+TGG | + | chr4_1:52604312-52604331 | None:intergenic | 15.0% |
!!! | AATTATTTTATTTCTTCAGT+TGG | - | chr4_1:52604314-52604333 | Msa0554870:CDS | 15.0% |
!! | TACATGATTTATATATCATA+TGG | - | chr4_1:52604514-52604533 | Msa0554870:intron | 15.0% |
!!! | TAATGAAATTACTAGTATTT+TGG | - | chr4_1:52605124-52605143 | Msa0554870:intron | 15.0% |
!!! | AATGAAATTACTAGTATTTT+GGG | - | chr4_1:52605125-52605144 | Msa0554870:intron | 15.0% |
!!! | ATTTTTAAAACTTTGTAAGT+TGG | + | chr4_1:52605219-52605238 | None:intergenic | 15.0% |
!!! | AATTTGTTAAAGCTAAATTT+AGG | + | chr4_1:52605381-52605400 | None:intergenic | 15.0% |
!! | TTCTATCATATAATATTTGA+AGG | - | chr4_1:52605491-52605510 | Msa0554870:intron | 15.0% |
!! | TCTATCATATAATATTTGAA+GGG | - | chr4_1:52605492-52605511 | Msa0554870:intron | 15.0% |
!!! | ATAGGTAATGTAATTTTTTT+CGG | + | chr4_1:52605528-52605547 | None:intergenic | 15.0% |
!!! | TAATTCAACTTCAATTTTAT+AGG | + | chr4_1:52605546-52605565 | None:intergenic | 15.0% |
!!! | CTTATAAGTTTATTTTTTCA+TGG | - | chr4_1:52606560-52606579 | Msa0554870:intron | 15.0% |
!! | AGAATCATCATATTTAAAAA+AGG | + | chr4_1:52607225-52607244 | None:intergenic | 15.0% |
!! | AATTAGTTGAATATTGTTTA+AGG | - | chr4_1:52607428-52607447 | Msa0554870:intron | 15.0% |
!! | AAAATTATTTCAATCAAAGA+TGG | - | chr4_1:52607635-52607654 | Msa0554870:intron | 15.0% |
!! | TTTAAATTTGCAACTAACTA+AGG | - | chr4_1:52602487-52602506 | Msa0554870:CDS | 20.0% |
!!! | ACCTTTTTTTTTTTTTTTGG+TGG | - | chr4_1:52602514-52602533 | Msa0554870:CDS | 20.0% |
!! | AAAATAGAAATGATGAAACT+CGG | - | chr4_1:52602696-52602715 | Msa0554870:CDS | 20.0% |
!!! | AAATATCTTAATCTCCATTT+TGG | - | chr4_1:52603365-52603384 | Msa0554870:intron | 20.0% |
!!! | TCATATGTAAAAGTATTCAT+TGG | - | chr4_1:52603617-52603636 | Msa0554870:CDS | 20.0% |
!! | AAAAAGGAAAAGAAATTGAT+AGG | + | chr4_1:52604279-52604298 | None:intergenic | 20.0% |
!!! | CATATTATCAATTGATTTTG+TGG | + | chr4_1:52604367-52604386 | None:intergenic | 20.0% |
!!! | ATATCTATTAAAAAGTACTG+TGG | - | chr4_1:52604543-52604562 | Msa0554870:intron | 20.0% |
!!! | TATCTATTAAAAAGTACTGT+GGG | - | chr4_1:52604544-52604563 | Msa0554870:intron | 20.0% |
!! | TAATAACACATCAAAGATTA+AGG | + | chr4_1:52604685-52604704 | None:intergenic | 20.0% |
!! | TAAACATGAAATATTTAGAG+TGG | - | chr4_1:52604949-52604968 | Msa0554870:intron | 20.0% |
!!! | AAACATGAAATATTTAGAGT+GGG | - | chr4_1:52604950-52604969 | Msa0554870:intron | 20.0% |
!!! | TTGAGGTAATTTATTTTTTG+AGG | - | chr4_1:52604991-52605010 | Msa0554870:intron | 20.0% |
!!! | TGAGGTAATTTATTTTTTGA+GGG | - | chr4_1:52604992-52605011 | Msa0554870:intron | 20.0% |
!! | TCTACATAAATTTCATTCTT+CGG | - | chr4_1:52605027-52605046 | Msa0554870:intron | 20.0% |
!! | CATTAGAATTCCTTAAATTT+AGG | + | chr4_1:52605109-52605128 | None:intergenic | 20.0% |
!!! | TTCTTTCAAAATTTTCAAAG+TGG | + | chr4_1:52605278-52605297 | None:intergenic | 20.0% |
!! | ATTTGACATTCACATTATAT+AGG | - | chr4_1:52605310-52605329 | Msa0554870:intron | 20.0% |
!! | ATTTCAAATTCCTAGATTTA+TGG | - | chr4_1:52605343-52605362 | Msa0554870:intron | 20.0% |
!!! | TTTAGGTAGTGTAATTTTAA+AGG | + | chr4_1:52605466-52605485 | None:intergenic | 20.0% |
!!! | AATTATCCTTTAAGATTTGA+AGG | - | chr4_1:52605561-52605580 | Msa0554870:intron | 20.0% |
!!! | ATTATCCTTTAAGATTTGAA+GGG | - | chr4_1:52605562-52605581 | Msa0554870:intron | 20.0% |
!!! | GTAAAGCATTTGATATTATA+TGG | + | chr4_1:52605611-52605630 | None:intergenic | 20.0% |
!! | TTTATGGTAATTCTAAATTG+TGG | - | chr4_1:52605871-52605890 | Msa0554870:CDS | 20.0% |
!!! | TTTAGAAGTATTGACTTTAT+TGG | - | chr4_1:52606019-52606038 | Msa0554870:intron | 20.0% |
!! | CTTCTATAACAAAATATAAG+CGG | + | chr4_1:52606262-52606281 | None:intergenic | 20.0% |
!! | ACTTATAAGTAAAATAGCAA+GGG | + | chr4_1:52606549-52606568 | None:intergenic | 20.0% |
!! | AACTTATAAGTAAAATAGCA+AGG | + | chr4_1:52606550-52606569 | None:intergenic | 20.0% |
!! | AATAAACAACAGTATGAATT+TGG | - | chr4_1:52607254-52607273 | Msa0554870:intron | 20.0% |
!! | TTTAAACTCTAAATTACTAG+CGG | + | chr4_1:52607591-52607610 | None:intergenic | 20.0% |
!! | ATGTTAATACTCTTCAAATT+AGG | + | chr4_1:52607688-52607707 | None:intergenic | 20.0% |
!!! | AATTTGAAGAGTATTAACAT+TGG | - | chr4_1:52607688-52607707 | Msa0554870:CDS | 20.0% |
!! | TCTAAAAAATTGGCATAAAA+AGG | - | chr4_1:52607850-52607869 | Msa0554870:intron | 20.0% |
! | GCATTTATGAAAAAACTTGT+TGG | - | chr4_1:52602275-52602294 | Msa0554870:CDS | 25.0% |
! | AAAAAGAAAAGAAAGTCCAT+GGG | - | chr4_1:52602417-52602436 | Msa0554870:CDS | 25.0% |
! | GCCACCAAAAAAAAAAAAAA+AGG | + | chr4_1:52602518-52602537 | None:intergenic | 25.0% |
!!! | TTTTTTTTTTTTTTGGTGGC+CGG | - | chr4_1:52602518-52602537 | Msa0554870:CDS | 25.0% |
! | AACAATGCATAAAATATGCA+AGG | + | chr4_1:52602558-52602577 | None:intergenic | 25.0% |
!! | ATTTATAAAAGCCTTTGAGA+AGG | + | chr4_1:52602935-52602954 | None:intergenic | 25.0% |
!!! | GTTTTTTTTAGTGGTACTTT+TGG | + | chr4_1:52603690-52603709 | None:intergenic | 25.0% |
! | AACTAGAAGGAAGAAAATTA+AGG | - | chr4_1:52603832-52603851 | Msa0554870:intron | 25.0% |
! | ACTAGAAGGAAGAAAATTAA+GGG | - | chr4_1:52603833-52603852 | Msa0554870:intron | 25.0% |
! | GGATTAAGGTCATAAAAAAA+AGG | + | chr4_1:52604419-52604438 | None:intergenic | 25.0% |
!!! | AGTCAAAATTTTAGTTGGAA+GGG | + | chr4_1:52604441-52604460 | None:intergenic | 25.0% |
!!! | AACTGAGTCAAAATTTTAGT+TGG | + | chr4_1:52604446-52604465 | None:intergenic | 25.0% |
! | CAGTATATAAGTCAAACATT+GGG | - | chr4_1:52604841-52604860 | Msa0554870:intron | 25.0% |
! | TTGTAAGTGAATTATAAGAG+TGG | - | chr4_1:52604914-52604933 | Msa0554870:intron | 25.0% |
!! | TTTTGTCCAACCTAAATTTA+AGG | - | chr4_1:52605096-52605115 | Msa0554870:intron | 25.0% |
! | AGAATTCCTTAAATTTAGGT+TGG | + | chr4_1:52605105-52605124 | None:intergenic | 25.0% |
! | AGATAGAGTAATAAAAGTTG+AGG | - | chr4_1:52605191-52605210 | Msa0554870:intron | 25.0% |
! | GATAGAGTAATAAAAGTTGA+GGG | - | chr4_1:52605192-52605211 | Msa0554870:intron | 25.0% |
! | CATTCACATTATATAGGATT+TGG | - | chr4_1:52605316-52605335 | Msa0554870:intron | 25.0% |
!! | ATTTCAAGTACCATAAATCT+AGG | + | chr4_1:52605356-52605375 | None:intergenic | 25.0% |
!! | TTTTTCCCTTCAAATCTTAA+AGG | + | chr4_1:52605570-52605589 | None:intergenic | 25.0% |
! | TAAGATTTGAAGGGAAAAAA+TGG | - | chr4_1:52605571-52605590 | Msa0554870:intron | 25.0% |
! | AATTAGAGTCATATATACTG+TGG | - | chr4_1:52605642-52605661 | Msa0554870:intron | 25.0% |
!! | GACAATTAAGTTCTTGTTTA+TGG | + | chr4_1:52605841-52605860 | None:intergenic | 25.0% |
! | TTTGATACCGTAACAAAATA+TGG | - | chr4_1:52605912-52605931 | Msa0554870:intron | 25.0% |
!!! | CCACAATTTAAATTTTTGAG+TGG | + | chr4_1:52605974-52605993 | None:intergenic | 25.0% |
! | CCACTCAAAAATTTAAATTG+TGG | - | chr4_1:52605971-52605990 | Msa0554870:intron | 25.0% |
!! | TATGGAACATATTTGGATTT+TGG | - | chr4_1:52606066-52606085 | Msa0554870:intron | 25.0% |
! | ACTTACATGTATCTATGATA+GGG | + | chr4_1:52606238-52606257 | None:intergenic | 25.0% |
! | AACTTACATGTATCTATGAT+AGG | + | chr4_1:52606239-52606258 | None:intergenic | 25.0% |
! | TGCGTATATATATATATGCA+AGG | - | chr4_1:52606293-52606312 | Msa0554870:intron | 25.0% |
! | CAAGGTTCCTAATTATAATA+TGG | - | chr4_1:52606311-52606330 | Msa0554870:intron | 25.0% |
!! | TAATCTTTTTATACTCTTGC+AGG | - | chr4_1:52606435-52606454 | Msa0554870:intron | 25.0% |
! | GCTAAGGAATATGAAAAATA+TGG | + | chr4_1:52606480-52606499 | None:intergenic | 25.0% |
!!! | CAGAGTTTTATAATTACTAC+TGG | - | chr4_1:52606683-52606702 | Msa0554870:intron | 25.0% |
!! | AACCAAGTGATGAATATTTT+TGG | - | chr4_1:52606950-52606969 | Msa0554870:intron | 25.0% |
! | AACCAAAAATATTCATCACT+TGG | + | chr4_1:52606955-52606974 | None:intergenic | 25.0% |
!! | TAAGGATGATTTGGATTAAA+TGG | + | chr4_1:52606999-52607018 | None:intergenic | 25.0% |
!! | TATTGTTTAAGGTTGTTATG+AGG | - | chr4_1:52607439-52607458 | Msa0554870:intron | 25.0% |
! | CACTATTTATAGTGATCATA+AGG | + | chr4_1:52607501-52607520 | None:intergenic | 25.0% |
! | TAGTGATCATTTGTGATATA+TGG | - | chr4_1:52607516-52607535 | Msa0554870:intron | 25.0% |
! | TCAAATTAGGTCAAATCATT+CGG | + | chr4_1:52607675-52607694 | None:intergenic | 25.0% |
! | GAGTATGCACAATAATAATA+AGG | - | chr4_1:52607964-52607983 | Msa0554870:intron | 25.0% |
! | TATGCACAATAATAATAAGG+TGG | - | chr4_1:52607967-52607986 | Msa0554870:intron | 25.0% |
CAATGAGCAATGATATAACA+AGG | + | chr4_1:52602193-52602212 | None:intergenic | 30.0% | |
GTTATATCATTGCTCATTGA+AGG | - | chr4_1:52602194-52602213 | Msa0554870:CDS | 30.0% | |
! | CATATATGCTTCAGTTTTTG+AGG | - | chr4_1:52602394-52602413 | Msa0554870:CDS | 30.0% |
GAAAAAGAAAAGAAAGTCCA+TGG | - | chr4_1:52602416-52602435 | Msa0554870:CDS | 30.0% | |
AAAAGAAAAGAAAGTCCATG+GGG | - | chr4_1:52602418-52602437 | Msa0554870:CDS | 30.0% | |
!!! | TAACCAACCTGTTTTAGTTT+TGG | + | chr4_1:52602454-52602473 | None:intergenic | 30.0% |
!!! | TTTTTTTTTTTTTGGTGGCC+GGG | - | chr4_1:52602519-52602538 | Msa0554870:CDS | 30.0% |
GTCATTTCTTCTGACAATAT+CGG | - | chr4_1:52602725-52602744 | Msa0554870:intron | 30.0% | |
! | TTGATGCAAATTTTGGACAT+TGG | + | chr4_1:52602756-52602775 | None:intergenic | 30.0% |
! | ATCCTTGTTGATGCAAATTT+TGG | + | chr4_1:52602763-52602782 | None:intergenic | 30.0% |
AAGTACTCAGAATCTTTACA+TGG | + | chr4_1:52602804-52602823 | None:intergenic | 30.0% | |
TGATCATGCAAGAAAAGAAT+TGG | - | chr4_1:52602830-52602849 | Msa0554870:intron | 30.0% | |
GATCATGCAAGAAAAGAATT+GGG | - | chr4_1:52602831-52602850 | Msa0554870:intron | 30.0% | |
TTCAACTTGATGTATAACTC+TGG | + | chr4_1:52603196-52603215 | None:intergenic | 30.0% | |
! | AGATTAAGATATTTAGCTCC+AGG | + | chr4_1:52603359-52603378 | None:intergenic | 30.0% |
ACATCGTTAATGTACAGTAA+AGG | + | chr4_1:52603404-52603423 | None:intergenic | 30.0% | |
TACAATTGTGACAGTTACTT+TGG | - | chr4_1:52603771-52603790 | Msa0554870:intron | 30.0% | |
! | TGTTGTAACTTGTAACTAGA+AGG | - | chr4_1:52603819-52603838 | Msa0554870:CDS | 30.0% |
!!! | CCAGTTTTGACTTTATGTTA+TGG | + | chr4_1:52603996-52604015 | None:intergenic | 30.0% |
CCATAACATAAAGTCAAAAC+TGG | - | chr4_1:52603993-52604012 | Msa0554870:intron | 30.0% | |
AAAACTACTAAGCTAGAGTA+CGG | + | chr4_1:52604183-52604202 | None:intergenic | 30.0% | |
AAAGAAATTGATAGGTGGTT+TGG | + | chr4_1:52604271-52604290 | None:intergenic | 30.0% | |
AAGGAAAAGAAATTGATAGG+TGG | + | chr4_1:52604276-52604295 | None:intergenic | 30.0% | |
! | TGATGGGTATACACAAAAAA+AGG | + | chr4_1:52604295-52604314 | None:intergenic | 30.0% |
TTGTGGCATATTATCAAGTT+TGG | + | chr4_1:52604350-52604369 | None:intergenic | 30.0% | |
!!! | GTCAAAATTTTAGTTGGAAG+GGG | + | chr4_1:52604440-52604459 | None:intergenic | 30.0% |
!!! | GAGTCAAAATTTTAGTTGGA+AGG | + | chr4_1:52604442-52604461 | None:intergenic | 30.0% |
CAATATCACATGTAAGGAAT+GGG | + | chr4_1:52604581-52604600 | None:intergenic | 30.0% | |
TAAGTGCAATATCACATGTA+AGG | + | chr4_1:52604587-52604606 | None:intergenic | 30.0% | |
AGATGAGAAGATGGAAAAAA+TGG | - | chr4_1:52604615-52604634 | Msa0554870:intron | 30.0% | |
GATGAGAAGATGGAAAAAAT+GGG | - | chr4_1:52604616-52604635 | Msa0554870:intron | 30.0% | |
CTTGAATATCAGATAGACAA+TGG | - | chr4_1:52604656-52604675 | Msa0554870:intron | 30.0% | |
AGCTCAATTTATTTAGACAG+AGG | + | chr4_1:52604722-52604741 | None:intergenic | 30.0% | |
! | CCAATGTTTGACTTATATAC+TGG | + | chr4_1:52604843-52604862 | None:intergenic | 30.0% |
CCAGTATATAAGTCAAACAT+TGG | - | chr4_1:52604840-52604859 | Msa0554870:intron | 30.0% | |
TATATAAGTCAAACATTGGG+TGG | - | chr4_1:52604844-52604863 | Msa0554870:intron | 30.0% | |
! | TTGAATGAGAGAATGTTTTG+AGG | - | chr4_1:52604974-52604993 | Msa0554870:intron | 30.0% |
TCACATTATATAGGATTTGG+AGG | - | chr4_1:52605319-52605338 | Msa0554870:intron | 30.0% | |
CTGTGGTTTATTCTATGTAT+AGG | - | chr4_1:52605659-52605678 | Msa0554870:intron | 30.0% | |
! | ATGTATAGGTCTGTTTTATG+CGG | - | chr4_1:52605673-52605692 | Msa0554870:intron | 30.0% |
ATTACTTTGCTCTACGAAAT+GGG | - | chr4_1:52605724-52605743 | Msa0554870:intron | 30.0% | |
!! | AAGTTTCATGTTGGTAATAG+TGG | + | chr4_1:52605772-52605791 | None:intergenic | 30.0% |
! | GTTGCATCCATATTTTGTTA+CGG | + | chr4_1:52605922-52605941 | None:intergenic | 30.0% |
AAGTCAATACTTCTAAACTG+TGG | + | chr4_1:52606016-52606035 | None:intergenic | 30.0% | |
TGCAATGTATGGAACATATT+TGG | - | chr4_1:52606059-52606078 | Msa0554870:intron | 30.0% | |
! | CTGCAGAAAAATATTTCTGA+AGG | - | chr4_1:52606123-52606142 | Msa0554870:intron | 30.0% |
CTTGCGTCCATATTATAATT+AGG | + | chr4_1:52606321-52606340 | None:intergenic | 30.0% | |
! | TTTTATACTCTTGCAGGTTT+TGG | - | chr4_1:52606441-52606460 | Msa0554870:intron | 30.0% |
TTTACCACAAGTGGAATAAA+TGG | + | chr4_1:52606712-52606731 | None:intergenic | 30.0% | |
GATATGAAATTTACCACAAG+TGG | + | chr4_1:52606721-52606740 | None:intergenic | 30.0% | |
!!! | ATCACTTGGTTTTACAAGTA+TGG | + | chr4_1:52606941-52606960 | None:intergenic | 30.0% |
! | TTTGGTTTCATAAACCTGAA+TGG | - | chr4_1:52606968-52606987 | Msa0554870:intron | 30.0% |
TAAAAAGTAGTACCTGGATA+AGG | + | chr4_1:52607017-52607036 | None:intergenic | 30.0% | |
TTCTCATAAAAAGTAGTACC+TGG | + | chr4_1:52607023-52607042 | None:intergenic | 30.0% | |
! | AGTGAAAAATGCAAGTTGAA+AGG | + | chr4_1:52607128-52607147 | None:intergenic | 30.0% |
! | TTCAACTTGCATTTTTCACT+TGG | - | chr4_1:52607128-52607147 | Msa0554870:intron | 30.0% |
TTGCTTCAATAGAGAAAAAG+AGG | - | chr4_1:52607286-52607305 | Msa0554870:intron | 30.0% | |
GGAAGAGTAAAAACAAAAGA+TGG | + | chr4_1:52607552-52607571 | None:intergenic | 30.0% | |
! | TTTTACTCTTCCGTTTCAAT+AGG | - | chr4_1:52607560-52607579 | Msa0554870:intron | 30.0% |
! | CATGAGAAAGGAAATTTTCA+CGG | - | chr4_1:52607811-52607830 | Msa0554870:intron | 30.0% |
TTACACCAGGTCTAAAAAAT+TGG | - | chr4_1:52607840-52607859 | Msa0554870:intron | 30.0% | |
!!! | TTATGCCAATTTTTTAGACC+TGG | + | chr4_1:52607848-52607867 | None:intergenic | 30.0% |
GAGTATGCACGATAATAATA+AGG | - | chr4_1:52608024-52608043 | Msa0554870:intron | 30.0% | |
TATGCACGATAATAATAAGG+TGG | - | chr4_1:52608027-52608046 | Msa0554870:intron | 30.0% | |
! | CTAGTCACTACTATTACTTT+TGG | + | chr4_1:52608133-52608152 | None:intergenic | 30.0% |
! | AACAGTCTTAATTTCTGAAG+TGG | + | chr4_1:52608242-52608261 | None:intergenic | 30.0% |
TTCAGAAATTAAGACTGTTG+AGG | - | chr4_1:52608243-52608262 | Msa0554870:intron | 30.0% | |
AAGACTGTTGAGGAAAATAA+TGG | - | chr4_1:52608253-52608272 | Msa0554870:intron | 30.0% | |
AGATCTTTGTTCTCCTTCTA+TGG | + | chr4_1:52602123-52602142 | None:intergenic | 35.0% | |
ATATCATTGCTCATTGAAGG+AGG | - | chr4_1:52602197-52602216 | Msa0554870:CDS | 35.0% | |
TAATTACCTCAGCCAATTTG+TGG | + | chr4_1:52602226-52602245 | None:intergenic | 35.0% | |
GCTTTGACCAAAACTAAAAC+AGG | - | chr4_1:52602444-52602463 | Msa0554870:CDS | 35.0% | |
TGACCAAAACTAAAACAGGT+TGG | - | chr4_1:52602448-52602467 | Msa0554870:CDS | 35.0% | |
CATAAAATATGCAAGGTCCA+GGG | + | chr4_1:52602551-52602570 | None:intergenic | 35.0% | |
GTCCAAAATTTGCATCAACA+AGG | - | chr4_1:52602758-52602777 | Msa0554870:intron | 35.0% | |
! | AGGATGTAGCAAATGCTTTT+CGG | - | chr4_1:52602778-52602797 | Msa0554870:intron | 35.0% |
AAAGATTCTGAGTACTTAGC+AGG | - | chr4_1:52602807-52602826 | Msa0554870:intron | 35.0% | |
GTTGATATTTCTTGTTCGTC+TGG | - | chr4_1:52603170-52603189 | Msa0554870:intron | 35.0% | |
! | GTAGGGATAATTTCAAGTGA+AGG | - | chr4_1:52603330-52603349 | Msa0554870:intron | 35.0% |
! | AATTTCAAGTGAAGGAATCC+TGG | - | chr4_1:52603338-52603357 | Msa0554870:intron | 35.0% |
GATATGAAACACAGCCAAAA+TGG | + | chr4_1:52603382-52603401 | None:intergenic | 35.0% | |
TGTACATTAACGATGTGTCT+TGG | - | chr4_1:52603408-52603427 | Msa0554870:intron | 35.0% | |
GTACATTAACGATGTGTCTT+GGG | - | chr4_1:52603409-52603428 | Msa0554870:intron | 35.0% | |
!! | TTTTAGTTGGAAGGGGATTA+AGG | + | chr4_1:52604433-52604452 | None:intergenic | 35.0% |
TTTGACTCAGTTGACAAAGA+CGG | - | chr4_1:52604454-52604473 | Msa0554870:intron | 35.0% | |
!! | TATTAAAAAGTACTGTGGGC+TGG | - | chr4_1:52604548-52604567 | Msa0554870:intron | 35.0% |
!! | ATTAAAAAGTACTGTGGGCT+GGG | - | chr4_1:52604549-52604568 | Msa0554870:intron | 35.0% |
GCAATATCACATGTAAGGAA+TGG | + | chr4_1:52604582-52604601 | None:intergenic | 35.0% | |
ATCTTTCACAGATGAGAAGA+TGG | - | chr4_1:52604606-52604625 | Msa0554870:intron | 35.0% | |
!! | GCAAGCGTCATTTTAAATTC+TGG | - | chr4_1:52604866-52604885 | Msa0554870:intron | 35.0% |
ATAATTATTCTCCCTTGCTG+TGG | - | chr4_1:52604890-52604909 | Msa0554870:intron | 35.0% | |
!! | TTTTGGGTACTTCAAACACA+TGG | - | chr4_1:52605141-52605160 | Msa0554870:intron | 35.0% |
GATTACTTTGCTCTACGAAA+TGG | - | chr4_1:52605723-52605742 | Msa0554870:intron | 35.0% | |
TGCATGGTGGTTATACTTAT+TGG | - | chr4_1:52605808-52605827 | Msa0554870:intron | 35.0% | |
TATGGATGCAACCACAATTA+CGG | - | chr4_1:52605930-52605949 | Msa0554870:intron | 35.0% | |
!! | TTACGACGAAGATTTTGAGA+AGG | - | chr4_1:52606188-52606207 | Msa0554870:intron | 35.0% |
!! | GAAGATTTTGAGAAGGTTGT+AGG | - | chr4_1:52606195-52606214 | Msa0554870:intron | 35.0% |
!! | CCAGATTGTTTAGTCTTGTA+TGG | + | chr4_1:52606409-52606428 | None:intergenic | 35.0% |
CCATACAAGACTAAACAATC+TGG | - | chr4_1:52606406-52606425 | Msa0554870:intron | 35.0% | |
ATTGAAGATTGCTCTTCTTG+CGG | - | chr4_1:52606843-52606862 | Msa0554870:intron | 35.0% | |
ATTAAATGGAGAAGCCATTC+AGG | + | chr4_1:52606985-52607004 | None:intergenic | 35.0% | |
AATCCAAATCATCCTTATCC+AGG | - | chr4_1:52607002-52607021 | Msa0554870:intron | 35.0% | |
! | TTGCATTTTTCACTTGGAGT+TGG | - | chr4_1:52607134-52607153 | Msa0554870:intron | 35.0% |
! | TGCATTTTTCACTTGGAGTT+GGG | - | chr4_1:52607135-52607154 | Msa0554870:CDS | 35.0% |
AACAGTATGAATTTGGTCCA+AGG | - | chr4_1:52607261-52607280 | Msa0554870:intron | 35.0% | |
AAAAAGAGGACATTGCCATA+AGG | - | chr4_1:52607300-52607319 | Msa0554870:intron | 35.0% | |
ATTGCCATAAGGATTGCATT+GGG | - | chr4_1:52607311-52607330 | Msa0554870:intron | 35.0% | |
TAAACCCAATGCAATCCTTA+TGG | + | chr4_1:52607318-52607337 | None:intergenic | 35.0% | |
! | TGTTTAAGGTTGTTATGAGG+TGG | - | chr4_1:52607442-52607461 | Msa0554870:intron | 35.0% |
ATTAGGTCAAATCATTCGGA+TGG | + | chr4_1:52607671-52607690 | None:intergenic | 35.0% | |
AAAGCATGCATCGAAATAAG+TGG | + | chr4_1:52607721-52607740 | None:intergenic | 35.0% | |
TGCATGAAATTGTGACAGAT+GGG | - | chr4_1:52607782-52607801 | Msa0554870:CDS | 35.0% | |
! | TTTTTAGACCTGGTGTAACA+TGG | + | chr4_1:52607838-52607857 | None:intergenic | 35.0% |
!!! | AACTGAGTTGTTGTTGCTTT+TGG | + | chr4_1:52607891-52607910 | None:intergenic | 35.0% |
GAACAAGTGAGAATTCAGTA+AGG | - | chr4_1:52607924-52607943 | Msa0554870:intron | 35.0% | |
GAGTATGCTCAACAACAATA+AGG | - | chr4_1:52608084-52608103 | Msa0554870:CDS | 35.0% | |
TATGCTCAACAACAATAAGG+TGG | - | chr4_1:52608087-52608106 | Msa0554870:CDS | 35.0% | |
TCTTGAAGAAACCCCAACAT+GGG | - | chr4_1:52602142-52602161 | Msa0554870:CDS | 40.0% | |
GCATAAAATATGCAAGGTCC+AGG | + | chr4_1:52602552-52602571 | None:intergenic | 40.0% | |
TTGCTTCACAATAGTTCTCG+TGG | + | chr4_1:52602860-52602879 | None:intergenic | 40.0% | |
CGAGAACTATTGTGAAGCAA+AGG | - | chr4_1:52602860-52602879 | Msa0554870:intron | 40.0% | |
TTCACATCACACCTTCTCAA+AGG | - | chr4_1:52602921-52602940 | Msa0554870:intron | 40.0% | |
ATTAACGATGTGTCTTGGGA+AGG | - | chr4_1:52603413-52603432 | Msa0554870:intron | 40.0% | |
AAATGCTTGTATGGATGGGA+TGG | + | chr4_1:52604038-52604057 | None:intergenic | 40.0% | |
AGGGAAATGCTTGTATGGAT+GGG | + | chr4_1:52604042-52604061 | None:intergenic | 40.0% | |
GAATGAGGGAAATGCTTGTA+TGG | + | chr4_1:52604047-52604066 | None:intergenic | 40.0% | |
ACAAGCATTTCCCTCATTCA+AGG | - | chr4_1:52604048-52604067 | Msa0554870:intron | 40.0% | |
AGACGAAACTCCTTGAATGA+GGG | + | chr4_1:52604061-52604080 | None:intergenic | 40.0% | |
TACTAAGCTAGAGTACGGTA+GGG | + | chr4_1:52604178-52604197 | None:intergenic | 40.0% | |
!! | TGGTTTGGTTAGAATGTAGG+TGG | + | chr4_1:52604256-52604275 | None:intergenic | 40.0% |
!! | AGGTGGTTTGGTTAGAATGT+AGG | + | chr4_1:52604259-52604278 | None:intergenic | 40.0% |
GAGAAGATGGAAAAAATGGG+AGG | - | chr4_1:52604619-52604638 | Msa0554870:intron | 40.0% | |
AAGATGGAAAAAATGGGAGG+AGG | - | chr4_1:52604622-52604641 | Msa0554870:intron | 40.0% | |
TCACTTACAATCCACAGCAA+GGG | + | chr4_1:52604904-52604923 | None:intergenic | 40.0% | |
TTCACTTACAATCCACAGCA+AGG | + | chr4_1:52604905-52604924 | None:intergenic | 40.0% | |
CAACATGAAACTTCCTCACT+GGG | - | chr4_1:52605779-52605798 | Msa0554870:intron | 40.0% | |
AAAGATCGCAACCGTAATTG+TGG | + | chr4_1:52605944-52605963 | None:intergenic | 40.0% | |
ATTACGGTTGCGATCTTTGT+AGG | - | chr4_1:52605946-52605965 | Msa0554870:intron | 40.0% | |
TATTGGACCATGCTTCATTG+TGG | - | chr4_1:52606036-52606055 | Msa0554870:intron | 40.0% | |
CTTCATTGTGGTGCAATGTA+TGG | - | chr4_1:52606048-52606067 | Msa0554870:intron | 40.0% | |
AAAATCTTCGTCGTAAGTGC+GGG | + | chr4_1:52606184-52606203 | None:intergenic | 40.0% | |
CAAAATCTTCGTCGTAAGTG+CGG | + | chr4_1:52606185-52606204 | None:intergenic | 40.0% | |
TTGAGAAGGTTGTAGGAATC+AGG | - | chr4_1:52606202-52606221 | Msa0554870:intron | 40.0% | |
TTCATATTCCTTAGCGCACA+TGG | - | chr4_1:52606485-52606504 | Msa0554870:intron | 40.0% | |
GCTTCCATTTATTCCACTTG+TGG | - | chr4_1:52606705-52606724 | Msa0554870:intron | 40.0% | |
TTGAAGATTGCTCTTCTTGC+GGG | - | chr4_1:52606844-52606863 | Msa0554870:intron | 40.0% | |
GTATGGTTCCTTTGATCACA+GGG | + | chr4_1:52606924-52606943 | None:intergenic | 40.0% | |
AGTATGGTTCCTTTGATCAC+AGG | + | chr4_1:52606925-52606944 | None:intergenic | 40.0% | |
GTACCTGGATAAGGATGATT+TGG | + | chr4_1:52607008-52607027 | None:intergenic | 40.0% | |
TCTCTATTGAAGCAAGACCT+TGG | + | chr4_1:52607281-52607300 | None:intergenic | 40.0% | |
CATTGCCATAAGGATTGCAT+TGG | - | chr4_1:52607310-52607329 | Msa0554870:intron | 40.0% | |
TGAGTGACAAGTGTGTAAAG+GGG | + | chr4_1:52607374-52607393 | None:intergenic | 40.0% | |
CTGAGTGACAAGTGTGTAAA+GGG | + | chr4_1:52607375-52607394 | None:intergenic | 40.0% | |
!! | GGTGATGCTTAGTTGATAGT+CGG | - | chr4_1:52607463-52607482 | Msa0554870:intron | 40.0% |
ACTCTTCCGTTTCAATAGGA+AGG | - | chr4_1:52607564-52607583 | Msa0554870:intron | 40.0% | |
CTGCATGAAATTGTGACAGA+TGG | - | chr4_1:52607781-52607800 | Msa0554870:CDS | 40.0% | |
GCATGAAATTGTGACAGATG+GGG | - | chr4_1:52607783-52607802 | Msa0554870:CDS | 40.0% | |
AGGTGGAAAATGTCTCAGTA+AGG | - | chr4_1:52607984-52608003 | Msa0554870:intron | 40.0% | |
AATGGTAAGATCATCACCAG+AGG | - | chr4_1:52608271-52608290 | Msa0554870:intron | 40.0% | |
ATCACCAGAGGAATCTATGA+CGG | - | chr4_1:52608283-52608302 | Msa0554870:intron | 40.0% | |
!! | ATCTCCTTTGGAGTGTATGT+GGG | - | chr4_1:52608310-52608329 | Msa0554870:CDS | 40.0% |
CTCTTGAAGAAACCCCAACA+TGG | - | chr4_1:52602141-52602160 | Msa0554870:CDS | 45.0% | |
AAACTGAGACAGCCCATGTT+GGG | + | chr4_1:52602157-52602176 | None:intergenic | 45.0% | |
TGAAGGAGGTCTCCACAAAT+TGG | - | chr4_1:52602211-52602230 | Msa0554870:CDS | 45.0% | |
GAAAAGAAAGTCCATGGGGA+AGG | - | chr4_1:52602422-52602441 | Msa0554870:CDS | 45.0% | |
GAGGGAAATGCTTGTATGGA+TGG | + | chr4_1:52604043-52604062 | None:intergenic | 45.0% | |
GAGACGAAACTCCTTGAATG+AGG | + | chr4_1:52604062-52604081 | None:intergenic | 45.0% | |
GAGATCGGAAAGAACACCAA+TGG | + | chr4_1:52604119-52604138 | None:intergenic | 45.0% | |
ACTAAGCTAGAGTACGGTAG+GGG | + | chr4_1:52604177-52604196 | None:intergenic | 45.0% | |
CTACTAAGCTAGAGTACGGT+AGG | + | chr4_1:52604179-52604198 | None:intergenic | 45.0% | |
! | TAGTTTTCACCACCTGTCCA+GGG | - | chr4_1:52604196-52604215 | Msa0554870:intron | 45.0% |
CCAGTGAGGAAGTTTCATGT+TGG | + | chr4_1:52605781-52605800 | None:intergenic | 45.0% | |
CCAACATGAAACTTCCTCAC+TGG | - | chr4_1:52605778-52605797 | Msa0554870:intron | 45.0% | |
CATTGCACCACAATGAAGCA+TGG | + | chr4_1:52606046-52606065 | None:intergenic | 45.0% | |
!!! | ACTCTTGCAGGTTTTGGATC+TGG | - | chr4_1:52606447-52606466 | Msa0554870:intron | 45.0% |
ATGTCATACCATGTGCGCTA+AGG | + | chr4_1:52606496-52606515 | None:intergenic | 45.0% | |
TGAAGATTGCTCTTCTTGCG+GGG | - | chr4_1:52606845-52606864 | Msa0554870:intron | 45.0% | |
GGCTTTGCTTGCAACTATCT+AGG | + | chr4_1:52606903-52606922 | None:intergenic | 45.0% | |
AAGCAAAGCCCTGTGATCAA+AGG | - | chr4_1:52606913-52606932 | Msa0554870:intron | 45.0% | |
CCTGAGTGACAAGTGTGTAA+AGG | + | chr4_1:52607376-52607395 | None:intergenic | 45.0% | |
CCTTTACACACTTGTCACTC+AGG | - | chr4_1:52607373-52607392 | Msa0554870:intron | 45.0% | |
AGCGGTCCTTCCTATTGAAA+CGG | + | chr4_1:52607573-52607592 | None:intergenic | 45.0% | |
GATGGGGTCTAACATGAGAA+AGG | - | chr4_1:52607799-52607818 | Msa0554870:CDS | 45.0% | |
TATGACGGTGAGATCTCCTT+TGG | - | chr4_1:52608298-52608317 | Msa0554870:CDS | 45.0% | |
!! | GATCTCCTTTGGAGTGTATG+TGG | - | chr4_1:52608309-52608328 | Msa0554870:CDS | 45.0% |
ACTACCCACATACACTCCAA+AGG | + | chr4_1:52608317-52608336 | None:intergenic | 45.0% | |
TATGTGGGTAGTAGTAGCAG+AGG | - | chr4_1:52608325-52608344 | Msa0554870:CDS | 45.0% | |
! | GTAGTAGTAGCAGAGGCATA+GGG | - | chr4_1:52608332-52608351 | Msa0554870:CDS | 45.0% |
! | TAGTAGTAGCAGAGGCATAG+GGG | - | chr4_1:52608333-52608352 | Msa0554870:CDS | 45.0% |
!! | TACAATTTATTATATTTAAA+GGG | - | chr4_1:52606770-52606789 | Msa0554870:intron | 5.0% |
AACTGAGACAGCCCATGTTG+GGG | + | chr4_1:52602156-52602175 | None:intergenic | 50.0% | |
CAAACTGAGACAGCCCATGT+TGG | + | chr4_1:52602158-52602177 | None:intergenic | 50.0% | |
AGGTCTCCACAAATTGGCTG+AGG | - | chr4_1:52602217-52602236 | Msa0554870:CDS | 50.0% | |
TTTGGTCAAAGCCTTCCCCA+TGG | + | chr4_1:52602436-52602455 | None:intergenic | 50.0% | |
TTATGATCGCCTGTGAGTGC+AGG | - | chr4_1:52603302-52603321 | Msa0554870:intron | 50.0% | |
TATGATCGCCTGTGAGTGCA+GGG | - | chr4_1:52603303-52603322 | Msa0554870:intron | 50.0% | |
GATGTGTCTTGGGAAGGCTA+AGG | - | chr4_1:52603419-52603438 | Msa0554870:intron | 50.0% | |
!! | AATGGCGAAAGCACTCTGCT+GGG | + | chr4_1:52604101-52604120 | None:intergenic | 50.0% |
GCGATGAAATGCGCAGAGAT+CGG | + | chr4_1:52604134-52604153 | None:intergenic | 50.0% | |
! | GTAGTTTTCACCACCTGTCC+AGG | - | chr4_1:52604195-52604214 | Msa0554870:intron | 50.0% |
AAGTTCGCCGTCAAATCCCA+GGG | + | chr4_1:52604227-52604246 | None:intergenic | 50.0% | |
TAAGTTCGCCGTCAAATCCC+AGG | + | chr4_1:52604228-52604247 | None:intergenic | 50.0% | |
CCATGCATGAAATCCCAGTG+AGG | + | chr4_1:52605795-52605814 | None:intergenic | 50.0% | |
CCTCACTGGGATTTCATGCA+TGG | - | chr4_1:52605792-52605811 | Msa0554870:intron | 50.0% | |
CACTGGGATTTCATGCATGG+TGG | - | chr4_1:52605795-52605814 | Msa0554870:intron | 50.0% | |
GTGGTACGCAGTTGCAATTG+TGG | + | chr4_1:52605997-52606016 | None:intergenic | 50.0% | |
TTCACGGACCATGTTACACC+AGG | - | chr4_1:52607827-52607846 | Msa0554870:intron | 50.0% | |
CTTCCAGAGTTGTTACCAGG+AGG | + | chr4_1:52608160-52608179 | None:intergenic | 50.0% | |
CCACTTCCAGAGTTGTTACC+AGG | + | chr4_1:52608163-52608182 | None:intergenic | 50.0% | |
! | CCTGGTAACAACTCTGGAAG+TGG | - | chr4_1:52608160-52608179 | Msa0554870:intron | 50.0% |
! | CAACTCTGGAAGTGGAGAAG+AGG | - | chr4_1:52608168-52608187 | Msa0554870:intron | 50.0% |
CTCACCGTCATAGATTCCTC+TGG | + | chr4_1:52608290-52608309 | None:intergenic | 50.0% | |
! | GGTAGTAGTAGCAGAGGCAT+AGG | - | chr4_1:52608331-52608350 | Msa0554870:CDS | 50.0% |
TGTGAGTGCAGGGCAAGGTA+GGG | - | chr4_1:52603313-52603332 | Msa0554870:intron | 55.0% | |
TCGTCTCTCAGTGTCAGCGT+CGG | - | chr4_1:52604075-52604094 | Msa0554870:intron | 55.0% | |
!! | CAATGGCGAAAGCACTCTGC+TGG | + | chr4_1:52604102-52604121 | None:intergenic | 55.0% |
! | CAGCAGAGTGCTTTCGCCAT+TGG | - | chr4_1:52604100-52604119 | Msa0554870:intron | 55.0% |
TGCGCATTTCATCGCTCCAC+CGG | - | chr4_1:52604139-52604158 | Msa0554870:intron | 55.0% | |
GTAGGGGCAGAGGGAATTTC+CGG | + | chr4_1:52604161-52604180 | None:intergenic | 55.0% | |
TAGAGTACGGTAGGGGCAGA+GGG | + | chr4_1:52604170-52604189 | None:intergenic | 55.0% | |
GGTTGAGCCCTGGGATTTGA+CGG | - | chr4_1:52604217-52604236 | Msa0554870:intron | 55.0% | |
! | GTAGTGACTAGTCCTCCTCC+TGG | - | chr4_1:52608142-52608161 | Msa0554870:intron | 55.0% |
CCAGAGTTGTTACCAGGAGG+AGG | + | chr4_1:52608157-52608176 | None:intergenic | 55.0% | |
CCTCCTCCTGGTAACAACTC+TGG | - | chr4_1:52608154-52608173 | Msa0554870:intron | 55.0% | |
CAAGGTCCAGGGTTCGAACC+CGG | + | chr4_1:52602540-52602559 | None:intergenic | 60.0% | |
CTACCTTGCCCTGCACTCAC+AGG | + | chr4_1:52603314-52603333 | None:intergenic | 60.0% | |
CTGTGAGTGCAGGGCAAGGT+AGG | - | chr4_1:52603312-52603331 | Msa0554870:intron | 60.0% | |
CTAGAGTACGGTAGGGGCAG+AGG | + | chr4_1:52604171-52604190 | None:intergenic | 60.0% | |
CAAATCCCAGGGCTCAACCC+TGG | + | chr4_1:52604216-52604235 | None:intergenic | 60.0% | |
TCGCCTGTGAGTGCAGGGCA+AGG | - | chr4_1:52603308-52603327 | Msa0554870:intron | 65.0% | |
GGGGCAGAGGGAATTTCCGG+TGG | + | chr4_1:52604158-52604177 | None:intergenic | 65.0% | |
AGGGCTCAACCCTGGACAGG+TGG | + | chr4_1:52604208-52604227 | None:intergenic | 65.0% | |
ACCTGTCCAGGGTTGAGCCC+TGG | - | chr4_1:52604207-52604226 | Msa0554870:intron | 65.0% | |
CCTGTCCAGGGTTGAGCCCT+GGG | - | chr4_1:52604208-52604227 | Msa0554870:intron | 65.0% | |
TGGTGGCCGGGTTCGAACCC+TGG | - | chr4_1:52602531-52602550 | Msa0554870:CDS | 70.0% | |
CCCAGGGCTCAACCCTGGAC+AGG | + | chr4_1:52604211-52604230 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_1 | gene | 52602116 | 52608408 | 52602116 | ID=Msa0554870;Name=Msa0554870 |
chr4_1 | mRNA | 52602116 | 52608408 | 52602116 | ID=Msa0554870-mRNA-1;Parent=Msa0554870;Name=Msa0554870-mRNA-1;_AED=0.16;_eAED=0.17;_QI=0|0|0|1|0.72|0.83|12|0|497 |
chr4_1 | exon | 52608286 | 52608408 | 52608286 | ID=Msa0554870-mRNA-1:exon:15262;Parent=Msa0554870-mRNA-1 |
chr4_1 | exon | 52608059 | 52608116 | 52608059 | ID=Msa0554870-mRNA-1:exon:15261;Parent=Msa0554870-mRNA-1 |
chr4_1 | exon | 52607643 | 52607821 | 52607643 | ID=Msa0554870-mRNA-1:exon:15260;Parent=Msa0554870-mRNA-1 |
chr4_1 | exon | 52607135 | 52607200 | 52607135 | ID=Msa0554870-mRNA-1:exon:15259;Parent=Msa0554870-mRNA-1 |
chr4_1 | exon | 52605847 | 52605907 | 52605847 | ID=Msa0554870-mRNA-1:exon:15258;Parent=Msa0554870-mRNA-1 |
chr4_1 | exon | 52604769 | 52604812 | 52604769 | ID=Msa0554870-mRNA-1:exon:15257;Parent=Msa0554870-mRNA-1 |
chr4_1 | exon | 52604301 | 52604395 | 52604301 | ID=Msa0554870-mRNA-1:exon:15256;Parent=Msa0554870-mRNA-1 |
chr4_1 | exon | 52604018 | 52604025 | 52604018 | ID=Msa0554870-mRNA-1:exon:15255;Parent=Msa0554870-mRNA-1 |
chr4_1 | exon | 52603798 | 52603838 | 52603798 | ID=Msa0554870-mRNA-1:exon:15254;Parent=Msa0554870-mRNA-1 |
chr4_1 | exon | 52603501 | 52603674 | 52603501 | ID=Msa0554870-mRNA-1:exon:15253;Parent=Msa0554870-mRNA-1 |
chr4_1 | exon | 52603368 | 52603403 | 52603368 | ID=Msa0554870-mRNA-1:exon:15252;Parent=Msa0554870-mRNA-1 |
chr4_1 | exon | 52602116 | 52602724 | 52602116 | ID=Msa0554870-mRNA-1:exon:15251;Parent=Msa0554870-mRNA-1 |
chr4_1 | CDS | 52608286 | 52608408 | 52608286 | ID=Msa0554870-mRNA-1:cds;Parent=Msa0554870-mRNA-1 |
chr4_1 | CDS | 52608059 | 52608116 | 52608059 | ID=Msa0554870-mRNA-1:cds;Parent=Msa0554870-mRNA-1 |
chr4_1 | CDS | 52607643 | 52607821 | 52607643 | ID=Msa0554870-mRNA-1:cds;Parent=Msa0554870-mRNA-1 |
chr4_1 | CDS | 52607135 | 52607200 | 52607135 | ID=Msa0554870-mRNA-1:cds;Parent=Msa0554870-mRNA-1 |
chr4_1 | CDS | 52605847 | 52605907 | 52605847 | ID=Msa0554870-mRNA-1:cds;Parent=Msa0554870-mRNA-1 |
chr4_1 | CDS | 52604769 | 52604812 | 52604769 | ID=Msa0554870-mRNA-1:cds;Parent=Msa0554870-mRNA-1 |
chr4_1 | CDS | 52604301 | 52604395 | 52604301 | ID=Msa0554870-mRNA-1:cds;Parent=Msa0554870-mRNA-1 |
chr4_1 | CDS | 52604018 | 52604025 | 52604018 | ID=Msa0554870-mRNA-1:cds;Parent=Msa0554870-mRNA-1 |
chr4_1 | CDS | 52603798 | 52603838 | 52603798 | ID=Msa0554870-mRNA-1:cds;Parent=Msa0554870-mRNA-1 |
chr4_1 | CDS | 52603501 | 52603674 | 52603501 | ID=Msa0554870-mRNA-1:cds;Parent=Msa0554870-mRNA-1 |
chr4_1 | CDS | 52603368 | 52603403 | 52603368 | ID=Msa0554870-mRNA-1:cds;Parent=Msa0554870-mRNA-1 |
chr4_1 | CDS | 52602116 | 52602724 | 52602116 | ID=Msa0554870-mRNA-1:cds;Parent=Msa0554870-mRNA-1 |
Gene Sequence |
Protein sequence |