Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555110 | XP_024642279.1 | 61.111 | 504 | 184 | 5 | 263 | 757 | 1 | 501 | 0.0 | 646 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555110 | sp|Q65XV7|RFA1C_ORYSJ | 23.636 | 495 | 333 | 19 | 260 | 721 | 307 | 789 | 1.41e-17 | 91.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555110 | A0A2Z6N7P2 | 55.429 | 525 | 224 | 4 | 261 | 776 | 8 | 531 | 0.0 | 602 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0408770 | Msa0555110 | 0.803408 | 3.536042e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555110 | MtrunA17_Chr1g0206481 | 53.737 | 281 | 130 | 0 | 263 | 543 | 5 | 285 | 3.44e-106 | 327 |
| Msa0555110 | MtrunA17_Chr5g0411141 | 44.406 | 286 | 159 | 0 | 258 | 543 | 1 | 286 | 1.63e-80 | 261 |
| Msa0555110 | MtrunA17_Chr2g0278111 | 44.681 | 282 | 156 | 0 | 262 | 543 | 4 | 285 | 1.99e-80 | 260 |
| Msa0555110 | MtrunA17_Chr5g0423441 | 44.351 | 239 | 133 | 0 | 262 | 500 | 4 | 242 | 2.53e-67 | 223 |
| Msa0555110 | MtrunA17_Chr4g0014311 | 42.361 | 288 | 139 | 7 | 515 | 779 | 1 | 284 | 1.62e-65 | 219 |
| Msa0555110 | MtrunA17_Chr2g0280031 | 44.978 | 229 | 117 | 1 | 278 | 497 | 1 | 229 | 5.19e-64 | 214 |
| Msa0555110 | MtrunA17_Chr3g0096071 | 43.204 | 206 | 114 | 1 | 390 | 595 | 21 | 223 | 2.28e-60 | 203 |
| Msa0555110 | MtrunA17_Chr1g0158831 | 51.370 | 146 | 71 | 0 | 398 | 543 | 3 | 148 | 1.86e-45 | 160 |
| Msa0555110 | MtrunA17_Chr5g0421841 | 38.164 | 207 | 127 | 1 | 262 | 468 | 4 | 209 | 2.26e-45 | 161 |
| Msa0555110 | MtrunA17_Chr1g0167871 | 29.736 | 417 | 264 | 9 | 256 | 656 | 203 | 606 | 1.33e-43 | 168 |
| Msa0555110 | MtrunA17_Chr8g0365271 | 41.885 | 191 | 102 | 5 | 595 | 779 | 5 | 192 | 4.96e-35 | 132 |
| Msa0555110 | MtrunA17_Chr3g0112231 | 32.035 | 231 | 135 | 4 | 445 | 667 | 1 | 217 | 1.17e-32 | 125 |
| Msa0555110 | MtrunA17_Chr2g0304851 | 27.083 | 384 | 237 | 12 | 265 | 635 | 11 | 364 | 3.84e-29 | 120 |
| Msa0555110 | MtrunA17_Chr5g0444831 | 39.891 | 183 | 101 | 5 | 603 | 779 | 1 | 180 | 1.33e-28 | 113 |
| Msa0555110 | MtrunA17_Chr5g0421741 | 37.121 | 132 | 83 | 0 | 262 | 393 | 4 | 135 | 3.40e-25 | 103 |
| Msa0555110 | MtrunA17_Chr1g0148711 | 37.121 | 132 | 83 | 0 | 262 | 393 | 4 | 135 | 3.40e-25 | 103 |
| Msa0555110 | MtrunA17_Chr3g0138341 | 44.186 | 129 | 55 | 4 | 595 | 720 | 20 | 134 | 1.58e-22 | 94.4 |
| Msa0555110 | MtrunA17_Chr4g0044661 | 26.621 | 293 | 200 | 7 | 266 | 549 | 14 | 300 | 1.59e-22 | 102 |
| Msa0555110 | MtrunA17_Chr7g0259081 | 33.533 | 167 | 107 | 2 | 266 | 431 | 8 | 171 | 3.92e-22 | 94.4 |
| Msa0555110 | MtrunA17_Chr6g0469931 | 29.752 | 242 | 151 | 8 | 266 | 498 | 8 | 239 | 7.88e-22 | 100 |
| Msa0555110 | MtrunA17_Chr7g0231491 | 30.233 | 215 | 140 | 4 | 256 | 467 | 32 | 239 | 1.49e-21 | 95.1 |
| Msa0555110 | MtrunA17_Chr1g0212881 | 50.000 | 90 | 44 | 1 | 603 | 692 | 1 | 89 | 2.22e-21 | 90.1 |
| Msa0555110 | MtrunA17_Chr2g0279021 | 26.911 | 327 | 219 | 11 | 423 | 738 | 4 | 321 | 7.03e-20 | 92.8 |
| Msa0555110 | MtrunA17_Chr5g0393531 | 30.435 | 184 | 116 | 3 | 288 | 469 | 24 | 197 | 5.87e-19 | 86.3 |
| Msa0555110 | MtrunA17_Chr7g0234721 | 31.737 | 167 | 110 | 2 | 266 | 431 | 8 | 171 | 7.20e-19 | 87.4 |
| Msa0555110 | MtrunA17_Chr1g0193821 | 26.374 | 182 | 107 | 3 | 320 | 500 | 2 | 157 | 1.84e-15 | 77.0 |
| Msa0555110 | MtrunA17_Chr4g0010241 | 30.769 | 143 | 97 | 2 | 309 | 450 | 70 | 211 | 3.75e-15 | 75.5 |
| Msa0555110 | MtrunA17_Chr3g0093401 | 26.033 | 242 | 165 | 4 | 263 | 501 | 5 | 235 | 6.03e-15 | 75.1 |
| Msa0555110 | MtrunA17_Chr5g0420451 | 28.111 | 217 | 129 | 6 | 258 | 469 | 1 | 195 | 8.80e-15 | 74.3 |
| Msa0555110 | MtrunA17_Chr7g0270411 | 38.462 | 130 | 78 | 2 | 651 | 779 | 1 | 129 | 1.74e-14 | 70.9 |
| Msa0555110 | MtrunA17_Chr2g0300061 | 48.333 | 60 | 31 | 0 | 639 | 698 | 15 | 74 | 4.10e-14 | 68.6 |
| Msa0555110 | MtrunA17_Chr2g0309041 | 42.466 | 73 | 42 | 0 | 302 | 374 | 1 | 73 | 7.97e-14 | 68.2 |
| Msa0555110 | MtrunA17_Chr6g0462951 | 29.921 | 127 | 87 | 2 | 344 | 469 | 2 | 127 | 2.47e-13 | 67.8 |
| Msa0555110 | MtrunA17_Chr7g0223511 | 27.604 | 192 | 109 | 4 | 285 | 469 | 40 | 208 | 2.73e-13 | 70.5 |
| Msa0555110 | MtrunA17_Chr8g0347361 | 31.373 | 153 | 93 | 4 | 263 | 412 | 18 | 161 | 7.40e-13 | 68.6 |
| Msa0555110 | MtrunA17_Chr6g0469811 | 28.125 | 128 | 92 | 0 | 265 | 392 | 16 | 143 | 9.81e-13 | 66.6 |
| Msa0555110 | MtrunA17_Chr4g0003711 | 43.836 | 73 | 25 | 1 | 538 | 610 | 1 | 57 | 2.94e-12 | 62.4 |
| Msa0555110 | MtrunA17_Chr1g0148611 | 27.211 | 147 | 103 | 3 | 324 | 468 | 16 | 160 | 8.05e-12 | 64.3 |
| Msa0555110 | MtrunA17_Chr1g0172341 | 33.051 | 118 | 74 | 2 | 258 | 374 | 1 | 114 | 2.68e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555110 | AT1G52950.1 | 27.692 | 455 | 307 | 11 | 264 | 702 | 8 | 456 | 1.90e-41 | 160 |
| Msa0555110 | AT2G05642.1 | 22.628 | 548 | 336 | 13 | 261 | 773 | 3 | 497 | 1.30e-35 | 142 |
| Msa0555110 | AT5G08020.1 | 22.762 | 391 | 280 | 11 | 257 | 631 | 150 | 534 | 1.09e-16 | 84.7 |
| Msa0555110 | AT2G06510.2 | 22.895 | 380 | 273 | 12 | 259 | 623 | 170 | 544 | 5.34e-13 | 73.2 |
| Msa0555110 | AT2G06510.1 | 22.895 | 380 | 273 | 12 | 259 | 623 | 193 | 567 | 6.84e-13 | 72.8 |
| Msa0555110 | AT5G61000.1 | 21.594 | 389 | 283 | 10 | 257 | 629 | 174 | 556 | 1.38e-12 | 71.6 |
Find 160 sgRNAs with CRISPR-Local
Find 547 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCAAGCTGAAGAAATATTT+TGG | 0.187340 | 4_1:+52838905 | Msa0555110:CDS |
| ATCAGCATTCAACATCATTT+TGG | 0.202417 | 4_1:-52839099 | None:intergenic |
| GGTTTCAGTTTCTGCATAAT+AGG | 0.269160 | 4_1:+52837044 | Msa0555110:CDS |
| TGCATAGATCTTCTTCAAAT+TGG | 0.284971 | 4_1:-52837281 | None:intergenic |
| TTACCCAGCCCGACCATAAA+AGG | 0.289451 | 4_1:-52832541 | None:intergenic |
| GGACAAAAGGATGCTGTTTA+AGG | 0.290061 | 4_1:+52840010 | Msa0555110:CDS |
| GGACCTCTTAGCACCTGTTT+TGG | 0.300072 | 4_1:-52835185 | None:intergenic |
| ATGCATGGTTCAGGCTGTTC+AGG | 0.310042 | 4_1:+52837299 | Msa0555110:CDS |
| AGGAAGCATTCATATGGTTT+TGG | 0.314390 | 4_1:+52838052 | Msa0555110:CDS |
| TATGCCTTTCCAATCAATAT+TGG | 0.317990 | 4_1:+52838452 | Msa0555110:CDS |
| TTATGCCTTTGAAAATTTCA+TGG | 0.328623 | 4_1:+52838311 | Msa0555110:CDS |
| ACACCATCGCCTATTGGATT+TGG | 0.328660 | 4_1:+52836937 | Msa0555110:CDS |
| TCTTCAGCTTGCCAAGTTGT+AGG | 0.333515 | 4_1:-52838895 | None:intergenic |
| TTATTTACATTAGATGTTAT+CGG | 0.336604 | 4_1:+52838589 | Msa0555110:intron |
| CACATTTCTGCCTAAAACAT+TGG | 0.337967 | 4_1:-52839834 | None:intergenic |
| TTCCCAATGAGTTGCTAGTT+GGG | 0.341034 | 4_1:-52840487 | None:intergenic |
| GTGAACAATGGAAGTTTGAT+TGG | 0.368902 | 4_1:+52836910 | Msa0555110:CDS |
| TCTATCTCAGACTTAAACTT+TGG | 0.370214 | 4_1:-52838276 | None:intergenic |
| TCCAAAGTTATTACTGTTGC+TGG | 0.374551 | 4_1:+52839598 | Msa0555110:CDS |
| TCTGCAGTAGATCGTCAGAT+AGG | 0.374952 | 4_1:-52839335 | None:intergenic |
| CATCAGTCATTTGCTGCTCA+TGG | 0.378844 | 4_1:+52837023 | Msa0555110:intron |
| TCCACAAATATGTCTAGTTC+AGG | 0.379657 | 4_1:-52839990 | None:intergenic |
| GGATCAACACCATCGCCTAT+TGG | 0.380475 | 4_1:+52836931 | Msa0555110:CDS |
| TTTCCCAATGAGTTGCTAGT+TGG | 0.382344 | 4_1:-52840488 | None:intergenic |
| TTTGTAATTGACAGGAGAAA+TGG | 0.385436 | 4_1:+52839052 | Msa0555110:intron |
| AATGACAAGGACGAGTTTGT+TGG | 0.390117 | 4_1:+52840446 | Msa0555110:CDS |
| GTTGAGTTGCCTTGTATGAT+TGG | 0.392393 | 4_1:-52838347 | None:intergenic |
| TGGTCAACATAATAAGGTTA+TGG | 0.393994 | 4_1:+52838654 | Msa0555110:CDS |
| ATGTGAGCTTGAGACCGATT+TGG | 0.396479 | 4_1:+52839543 | Msa0555110:CDS |
| ATGCCAATCTCTTTCGGAAC+TGG | 0.397918 | 4_1:+52840045 | Msa0555110:CDS |
| ATTGAGAGGTGGGGTTTGCC+TGG | 0.404834 | 4_1:+52834500 | Msa0555110:CDS |
| AAACCAAGTGCTACACATTA+CGG | 0.405179 | 4_1:-52835458 | None:intergenic |
| TGTGAGCTTGAGACCGATTT+GGG | 0.405838 | 4_1:+52839544 | Msa0555110:CDS |
| GAAATGTGTTGGCTCTGTTT+TGG | 0.405841 | 4_1:+52839513 | Msa0555110:intron |
| CACAGAGTCAATGCTATTAG+AGG | 0.408544 | 4_1:-52835206 | None:intergenic |
| TATAATGTGAGCAGACTTGA+TGG | 0.411597 | 4_1:+52839255 | Msa0555110:intron |
| AGACTCAAAGGATGACAATT+GGG | 0.412740 | 4_1:+52839355 | Msa0555110:CDS |
| GACACACCAACCACCAAAAC+AGG | 0.418702 | 4_1:+52835172 | Msa0555110:CDS |
| CAGACTCAAAGGATGACAAT+TGG | 0.423285 | 4_1:+52839354 | Msa0555110:CDS |
| CACCCCAACTAGCAACTCAT+TGG | 0.423603 | 4_1:+52840484 | Msa0555110:CDS |
| ACAGAATCCATTGCACTTTG+TGG | 0.426461 | 4_1:+52838804 | Msa0555110:CDS |
| TCGGCGATGCCAATCTCTTT+CGG | 0.431889 | 4_1:+52840039 | Msa0555110:CDS |
| CTGAACATTTGAATTGTTTG+CGG | 0.434222 | 4_1:-52835015 | None:intergenic |
| TCACAAAACCTACCAGAGTC+AGG | 0.436129 | 4_1:+52835263 | Msa0555110:CDS |
| GATTTATAGTTAGCAACAAC+AGG | 0.439936 | 4_1:-52839125 | None:intergenic |
| TATCGGACATGTTGTTGAAA+AGG | 0.440974 | 4_1:+52838606 | Msa0555110:CDS |
| ATCGGACATGTTGTTGAAAA+GGG | 0.442697 | 4_1:+52838607 | Msa0555110:CDS |
| TTGATGTCACATCAGTATCT+TGG | 0.444988 | 4_1:-52835413 | None:intergenic |
| AGGCATAAAATCAAAATGAT+AGG | 0.445357 | 4_1:-52838436 | None:intergenic |
| CAGAAATGTGCAAGATCTGC+TGG | 0.446761 | 4_1:+52839847 | Msa0555110:CDS |
| AGAAGATCTATGCATGGTTC+AGG | 0.448358 | 4_1:+52837290 | Msa0555110:CDS |
| CAGCCAGAGTAATTCATCTA+TGG | 0.449462 | 4_1:+52837997 | Msa0555110:CDS |
| TAGACATATTTGTGGACAAA+AGG | 0.452538 | 4_1:+52839997 | Msa0555110:CDS |
| AAGGATGCTGTTTAAGGTTG+AGG | 0.452671 | 4_1:+52840016 | Msa0555110:CDS |
| TCACTGGGTCCAAATCCAAT+AGG | 0.453534 | 4_1:-52836946 | None:intergenic |
| GCTTCCTTCCTCTGAGGTGT+TGG | 0.458572 | 4_1:-52838036 | None:intergenic |
| CAGAATCCATTGCACTTTGT+GGG | 0.464500 | 4_1:+52838805 | Msa0555110:CDS |
| GATGAATTACTCTGGCTGTC+AGG | 0.468918 | 4_1:-52837992 | None:intergenic |
| GTTGATGATGGTGGTGAAGC+TGG | 0.471291 | 4_1:+52835229 | Msa0555110:CDS |
| ACGCCAGTTCCGAAAGAGAT+TGG | 0.471867 | 4_1:-52840048 | None:intergenic |
| AAGAGAGGAAGCTAACAATA+AGG | 0.473176 | 4_1:+52833115 | Msa0555110:CDS |
| TAGTAGCTGCCAATATTGAT+TGG | 0.473318 | 4_1:-52838461 | None:intergenic |
| GCATAATAGGAAGTGAAAAC+AGG | 0.475551 | 4_1:+52837057 | Msa0555110:CDS |
| TCTGAGGTGTTGGTACGGTC+TGG | 0.476886 | 4_1:-52838026 | None:intergenic |
| TTGTAATTGACAGGAGAAAT+GGG | 0.478152 | 4_1:+52839053 | Msa0555110:intron |
| GCAAGATCTGCTGGATTCAA+TGG | 0.488712 | 4_1:+52839856 | Msa0555110:CDS |
| TCAGATAGGGAGAGTACAAC+AGG | 0.490324 | 4_1:-52839321 | None:intergenic |
| CTAGCAACTCATTGGGAAAG+AGG | 0.490486 | 4_1:+52840492 | Msa0555110:CDS |
| AGAGGAAGGAAGCATTCATA+TGG | 0.493734 | 4_1:+52838046 | Msa0555110:CDS |
| TCCCAATGAGTTGCTAGTTG+GGG | 0.497769 | 4_1:-52840486 | None:intergenic |
| AGCCTGTATTGTCGATCACT+TGG | 0.504010 | 4_1:-52839778 | None:intergenic |
| GCACCGGTTTGATTTGATGA+AGG | 0.504707 | 4_1:+52837079 | Msa0555110:CDS |
| CCATGTGTTGCACGATATCA+TGG | 0.505028 | 4_1:+52834475 | Msa0555110:CDS |
| TTTAAGTCTGAGATAGAAGA+AGG | 0.506855 | 4_1:+52838282 | Msa0555110:CDS |
| GTCCAAGTGATCGACAATAC+AGG | 0.510354 | 4_1:+52839776 | Msa0555110:CDS |
| ACCAGCAACAGTAATAACTT+TGG | 0.512434 | 4_1:-52839599 | None:intergenic |
| GAGACTCAAGTAGCAAGGTA+AGG | 0.513120 | 4_1:-52834953 | None:intergenic |
| ATAAAATCAAAATGATAGGC+AGG | 0.513509 | 4_1:-52838432 | None:intergenic |
| ACCCCAACTAGCAACTCATT+GGG | 0.517430 | 4_1:+52840485 | Msa0555110:CDS |
| CTCTAATAGCATTGACTCTG+TGG | 0.517868 | 4_1:+52835207 | Msa0555110:CDS |
| GGTTATGGATTTGACTCTTG+AGG | 0.518023 | 4_1:+52838669 | Msa0555110:CDS |
| TGCATTGAGCATGGCTGCAT+CGG | 0.520051 | 4_1:+52832504 | None:intergenic |
| TTGATAATACCAGCCCAAAT+CGG | 0.526348 | 4_1:-52839557 | None:intergenic |
| TATCATGGAGATTGAGAGGT+GGG | 0.527811 | 4_1:+52834490 | Msa0555110:CDS |
| ACCTGAACTAGACATATTTG+TGG | 0.530841 | 4_1:+52839989 | Msa0555110:CDS |
| CAATGAGTTGCTAGTTGGGG+TGG | 0.534033 | 4_1:-52840483 | None:intergenic |
| AAACATTGACAGAAATGTGT+TGG | 0.534709 | 4_1:+52839502 | Msa0555110:intron |
| CTGCAGTAGATCGTCAGATA+GGG | 0.535937 | 4_1:-52839334 | None:intergenic |
| GGAATTAATTGAAGCAACTC+AGG | 0.536426 | 4_1:+52839377 | Msa0555110:CDS |
| ACAAATATGTCTAGTTCAGG+TGG | 0.540182 | 4_1:-52839987 | None:intergenic |
| AGCATTTGGTAGAAAAGGAA+TGG | 0.542374 | 4_1:+52832678 | Msa0555110:intron |
| GTTGTCGAGCTTAGTGTGGA+TGG | 0.545480 | 4_1:+52834987 | Msa0555110:CDS |
| GGTTTGATTTGATGAAGGAA+TGG | 0.545680 | 4_1:+52837084 | Msa0555110:CDS |
| ATTGACTCTGTGGTTGATGA+TGG | 0.547939 | 4_1:+52835217 | Msa0555110:CDS |
| GCTATCGATGTTGGTACAGC+AGG | 0.549841 | 4_1:+52840524 | Msa0555110:CDS |
| AGCTTGAGACCGATTTGGGC+TGG | 0.550130 | 4_1:+52839548 | Msa0555110:CDS |
| ACTAGAGAGGACAAGTTGCT+TGG | 0.551249 | 4_1:+52838480 | Msa0555110:CDS |
| TCTGCTGATGCTATCGATGT+TGG | 0.552324 | 4_1:+52840515 | Msa0555110:CDS |
| TCAAAGACTGACCCTGACTC+TGG | 0.555752 | 4_1:-52835275 | None:intergenic |
| CTTCCTCTGAGGTGTTGGTA+CGG | 0.556528 | 4_1:-52838031 | None:intergenic |
| TTCTGTTGTCGAGCTTAGTG+TGG | 0.559875 | 4_1:+52834983 | Msa0555110:CDS |
| GTGTGTGGGAAAGCTGCAGC+AGG | 0.560501 | 4_1:+52832703 | Msa0555110:CDS |
| AAACAATTCAAATGTTCAGA+TGG | 0.561103 | 4_1:+52835019 | Msa0555110:CDS |
| TTGAGCATGGCTGCATCGGA+AGG | 0.561150 | 4_1:+52832508 | None:intergenic |
| ATTCCTTCATCAAATCAAAC+CGG | 0.561774 | 4_1:-52837082 | None:intergenic |
| TGGGAAAGCTGCAGCAGGAA+CGG | 0.562580 | 4_1:+52832708 | Msa0555110:CDS |
| ACGATCTACTGCAGACTCAA+AGG | 0.566649 | 4_1:+52839343 | Msa0555110:CDS |
| TGTGGGATCAATTTGCTGAA+AGG | 0.569656 | 4_1:+52838822 | Msa0555110:CDS |
| AGGCAACTCAACACAAGTAT+CGG | 0.569791 | 4_1:+52838358 | Msa0555110:CDS |
| CCACCAAAACAGGTGCTAAG+AGG | 0.573345 | 4_1:+52835182 | Msa0555110:CDS |
| CCATGATATCGTGCAACACA+TGG | 0.574558 | 4_1:-52834475 | None:intergenic |
| CGTACCAACACCTCAGAGGA+AGG | 0.577030 | 4_1:+52838032 | Msa0555110:CDS |
| TTTGATGAAGGAATGGCAAG+AGG | 0.580894 | 4_1:+52837091 | Msa0555110:CDS |
| GCAGGAAGCACTGTGAAGCT+TGG | 0.582084 | 4_1:+52833089 | Msa0555110:intron |
| AGACTCAAGTAGCAAGGTAA+GGG | 0.582548 | 4_1:-52834952 | None:intergenic |
| CATAATGATGTTGATGCAGT+TGG | 0.586366 | 4_1:+52840246 | Msa0555110:CDS |
| ACTTTGGTATCAAATGTTTG+CGG | 0.590708 | 4_1:-52838260 | None:intergenic |
| TGACCATAGATGAATTACTC+TGG | 0.591297 | 4_1:-52838000 | None:intergenic |
| ACTGAACATATAAGATCACT+TGG | 0.593702 | 4_1:-52840615 | None:intergenic |
| TAGGAAGTGAAAACAGGCAC+CGG | 0.597735 | 4_1:+52837063 | Msa0555110:CDS |
| ATGCTGTTTAAGGTTGAGGT+CGG | 0.597798 | 4_1:+52840020 | Msa0555110:CDS |
| TGCCTTGTATGATTGGTCGT+TGG | 0.597879 | 4_1:-52838340 | None:intergenic |
| ATTGATCCCACAAAGTGCAA+TGG | 0.598198 | 4_1:-52838811 | None:intergenic |
| AGACTGACCCTGACTCTGGT+AGG | 0.606927 | 4_1:-52835271 | None:intergenic |
| TACCAACGACCAATCATACA+AGG | 0.610985 | 4_1:+52838338 | Msa0555110:CDS |
| AAAGTTATTACTGTTGCTGG+TGG | 0.612216 | 4_1:+52839601 | Msa0555110:CDS |
| TGTGAAGCTTGGTGTAAGAG+AGG | 0.622447 | 4_1:+52833100 | Msa0555110:CDS |
| CAAATATGTCTAGTTCAGGT+GGG | 0.623020 | 4_1:-52839986 | None:intergenic |
| GGTCCAAATCCAATAGGCGA+TGG | 0.624767 | 4_1:-52836940 | None:intergenic |
| TGTTGAAAAGGGCATTGTGA+AGG | 0.626851 | 4_1:+52838618 | Msa0555110:CDS |
| GCTGCCAATATTGATTGGAA+AGG | 0.630374 | 4_1:-52838456 | None:intergenic |
| GACTCAAAGGATGACAATTG+GGG | 0.632280 | 4_1:+52839356 | Msa0555110:CDS |
| GCAGTCATTTGACTAACGAC+TGG | 0.632666 | 4_1:-52839297 | None:intergenic |
| TGTTGATGCAGTTGGTGAGA+CGG | 0.633115 | 4_1:+52840254 | Msa0555110:CDS |
| ATGAATGCTTCCTTCCTCTG+AGG | 0.633509 | 4_1:-52838042 | None:intergenic |
| TAACGACTGGAGTTAGCTGA+AGG | 0.635534 | 4_1:-52839284 | None:intergenic |
| GACTCTGTGGTTGATGATGG+TGG | 0.637726 | 4_1:+52835220 | Msa0555110:CDS |
| CACAAAACCTACCAGAGTCA+GGG | 0.640036 | 4_1:+52835264 | Msa0555110:CDS |
| GTAGCGAGACTCAAGTAGCA+AGG | 0.643827 | 4_1:-52834958 | None:intergenic |
| AATATTGGCAGCTACTAGAG+AGG | 0.644517 | 4_1:+52838467 | Msa0555110:CDS |
| ACGATATCATGGAGATTGAG+AGG | 0.644821 | 4_1:+52834486 | Msa0555110:CDS |
| TTGTTGAGTCATGATTGGCA+AGG | 0.645985 | 4_1:-52838856 | None:intergenic |
| TTGTTGCTAACTATAAATCA+CGG | 0.646537 | 4_1:+52839129 | Msa0555110:CDS |
| TGCAGTGTGTCAGTGAACAA+TGG | 0.646946 | 4_1:+52836898 | Msa0555110:intron |
| AGCACGGTCAAACAGTGTGA+AGG | 0.648451 | 4_1:-52839807 | None:intergenic |
| ATTTGAAGAAGATCTATGCA+TGG | 0.649724 | 4_1:+52837284 | Msa0555110:CDS |
| GCAATCTCTGACATTGTGTG+TGG | 0.651426 | 4_1:+52837954 | Msa0555110:CDS |
| ATCATGGAGATTGAGAGGTG+GGG | 0.652123 | 4_1:+52834491 | Msa0555110:CDS |
| GTGATTGTGATCCTACAACT+TGG | 0.653904 | 4_1:+52838884 | Msa0555110:CDS |
| GAAAAGGAATGGTTGTGTGT+GGG | 0.654264 | 4_1:+52832689 | Msa0555110:intron |
| TGGTGAAGCTGGCCAGACGT+CGG | 0.661799 | 4_1:+52835240 | Msa0555110:CDS |
| AGAAAAGGAATGGTTGTGTG+TGG | 0.664753 | 4_1:+52832688 | Msa0555110:intron |
| ATATCATGGAGATTGAGAGG+TGG | 0.670865 | 4_1:+52834489 | Msa0555110:CDS |
| AGGTGGTGACTCAAATGACA+AGG | 0.684758 | 4_1:+52840433 | Msa0555110:CDS |
| CTAAAACATTGGAAACAGCA+CGG | 0.695831 | 4_1:-52839823 | None:intergenic |
| AAAGATATTGATCAATGACG+AGG | 0.708300 | 4_1:+52835386 | Msa0555110:intron |
| AGACCGTACCAACACCTCAG+AGG | 0.709849 | 4_1:+52838028 | Msa0555110:CDS |
| TACTGATGTGACATCAAATG+TGG | 0.714058 | 4_1:+52835419 | Msa0555110:CDS |
| CTCATGCAGCAATACATGTG+TGG | 0.723435 | 4_1:+52835147 | Msa0555110:CDS |
| ACAGCAGGTGAAGATGACAG+TGG | 0.818536 | 4_1:+52840539 | Msa0555110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATAATAATAATATTA+GGG | - | chr4_1:52836513-52836532 | None:intergenic | 0.0% |
| !! | ATAATAATAATAATAATATT+AGG | - | chr4_1:52836514-52836533 | None:intergenic | 0.0% |
| !! | AAGTTATATCTTTAATAATT+TGG | + | chr4_1:52833766-52833785 | Msa0555110:intron | 10.0% |
| !! | TTTAGTCAAAATATTTAATA+GGG | - | chr4_1:52834059-52834078 | None:intergenic | 10.0% |
| !!! | TTTTAGTCAAAATATTTAAT+AGG | - | chr4_1:52834060-52834079 | None:intergenic | 10.0% |
| !!! | TGTTTTAAATTAAGTTTTAA+AGG | + | chr4_1:52834094-52834113 | Msa0555110:intron | 10.0% |
| !!! | GTTTTAAATTAAGTTTTAAA+GGG | + | chr4_1:52834095-52834114 | Msa0555110:intron | 10.0% |
| !! | AAAACATATAAAAATGTAAA+TGG | - | chr4_1:52834676-52834695 | None:intergenic | 10.0% |
| !! | ATTGTTCAATTATTATTAAT+AGG | + | chr4_1:52834906-52834925 | Msa0555110:intron | 10.0% |
| !! | TATTATTATTATTATTTCCT+TGG | + | chr4_1:52836531-52836550 | Msa0555110:intron | 10.0% |
| !!! | TATATATGTATATACTTTTA+TGG | + | chr4_1:52838538-52838557 | Msa0555110:intron | 10.0% |
| !!! | TTAGTTATTTTGTTTTAATC+AGG | + | chr4_1:52833334-52833353 | Msa0555110:intron | 15.0% |
| !!! | ATTTAAACATTTTAAAACCT+TGG | - | chr4_1:52833712-52833731 | None:intergenic | 15.0% |
| !!! | AAAGATATAACTTTTTTTAC+TGG | - | chr4_1:52833759-52833778 | None:intergenic | 15.0% |
| !! | CTGATTCATTAAAAAAAAAT+AGG | + | chr4_1:52833953-52833972 | Msa0555110:intron | 15.0% |
| !!! | ATTTTAAAATTCCACAATTT+TGG | + | chr4_1:52834030-52834049 | Msa0555110:intron | 15.0% |
| !! | TTAGTCAAAATATTTAATAG+GGG | - | chr4_1:52834058-52834077 | None:intergenic | 15.0% |
| !! | TATATATATATGAAAATGCA+TGG | - | chr4_1:52834233-52834252 | None:intergenic | 15.0% |
| !! | TTAATTAGTTATTATTATGG+AGG | - | chr4_1:52836145-52836164 | None:intergenic | 15.0% |
| !! | CCATTAATTAGTTATTATTA+TGG | - | chr4_1:52836148-52836167 | None:intergenic | 15.0% |
| !! | CCATAATAATAACTAATTAA+TGG | + | chr4_1:52836145-52836164 | Msa0555110:intron | 15.0% |
| !!! | CTTGAATTTTACAAAAAATT+GGG | + | chr4_1:52836230-52836249 | Msa0555110:intron | 15.0% |
| !!! | TTGAATTTTACAAAAAATTG+GGG | + | chr4_1:52836231-52836250 | Msa0555110:intron | 15.0% |
| !! | AATCAAAATATGAAAATTCA+AGG | - | chr4_1:52836286-52836305 | None:intergenic | 15.0% |
| !! | AAATCTTAATAGGAAATTTA+AGG | - | chr4_1:52836456-52836475 | None:intergenic | 15.0% |
| !! | TAAATTTCCTATTAAGATTT+AGG | + | chr4_1:52836456-52836475 | Msa0555110:intron | 15.0% |
| !! | AAATTTCCTATTAAGATTTA+GGG | + | chr4_1:52836457-52836476 | Msa0555110:intron | 15.0% |
| !!! | AAGCTGAAATTTTAATATAT+TGG | + | chr4_1:52836801-52836820 | Msa0555110:intron | 15.0% |
| !! | AAACTATTTAAAAAATCTCA+TGG | + | chr4_1:52837528-52837547 | Msa0555110:intron | 15.0% |
| !! | TTATTTACATTAGATGTTAT+CGG | + | chr4_1:52838589-52838608 | Msa0555110:intron | 15.0% |
| !! | AACAAATCATTCTTAAAATA+TGG | - | chr4_1:52838746-52838765 | None:intergenic | 15.0% |
| !! | TGATATAATATAATGTGTTA+GGG | - | chr4_1:52839233-52839252 | None:intergenic | 15.0% |
| !! | TATATATCTTAAATTGATTG+TGG | + | chr4_1:52839467-52839486 | Msa0555110:intron | 15.0% |
| !! | ATTTCCTAAAACAAATATAA+GGG | - | chr4_1:52840407-52840426 | None:intergenic | 15.0% |
| !! | AATTTCCTAAAACAAATATA+AGG | - | chr4_1:52840408-52840427 | None:intergenic | 15.0% |
| !! | TTAACTTTGATTGATTATCT+GGG | + | chr4_1:52832961-52832980 | Msa0555110:intron | 20.0% |
| !!! | TTATTTTGTTTTAATCAGGA+TGG | + | chr4_1:52833338-52833357 | Msa0555110:intron | 20.0% |
| !! | CAATTTGATCAATTATGTTA+CGG | - | chr4_1:52835087-52835106 | None:intergenic | 20.0% |
| !! | TTTAATATGGTACATTACAA+AGG | + | chr4_1:52835611-52835630 | Msa0555110:intron | 20.0% |
| !!! | TTTTTTAAACCTCTCAAAAA+AGG | - | chr4_1:52835827-52835846 | None:intergenic | 20.0% |
| !! | TAAATCACAAAAATAGTTAC+TGG | - | chr4_1:52835925-52835944 | None:intergenic | 20.0% |
| !!! | TTTTTGTAAAATTCAAGGTT+TGG | - | chr4_1:52836227-52836246 | None:intergenic | 20.0% |
| !!! | CCAATTTTTTGTAAAATTCA+AGG | - | chr4_1:52836232-52836251 | None:intergenic | 20.0% |
| !!! | CCTTGAATTTTACAAAAAAT+TGG | + | chr4_1:52836229-52836248 | Msa0555110:intron | 20.0% |
| !!! | TTGTGATTGTGTTATTATTT+AGG | + | chr4_1:52836420-52836439 | Msa0555110:intron | 20.0% |
| !!! | TGTGATTGTGTTATTATTTA+GGG | + | chr4_1:52836421-52836440 | Msa0555110:intron | 20.0% |
| !! | TTTAATATATTGGAACTTCA+AGG | + | chr4_1:52836811-52836830 | Msa0555110:intron | 20.0% |
| !! | TTTCAAAATTGTATCTTTGA+TGG | + | chr4_1:52837237-52837256 | Msa0555110:intron | 20.0% |
| !! | TTTAAAAAATCTCATGGAAA+CGG | + | chr4_1:52837534-52837553 | Msa0555110:intron | 20.0% |
| !!! | AAACTATTTAAAACATCTCA+TGG | - | chr4_1:52837588-52837607 | None:intergenic | 20.0% |
| !!! | AAAGTGTCTATTTATAAGAA+GGG | - | chr4_1:52837755-52837774 | None:intergenic | 20.0% |
| !! | TATAAATCAAAAGAATTGAC+AGG | - | chr4_1:52838166-52838185 | None:intergenic | 20.0% |
| !!! | TTGATTTATACATACTGATT+CGG | + | chr4_1:52838176-52838195 | Msa0555110:intron | 20.0% |
| !! | TAGTAACAATGATAGTTAAA+AGG | + | chr4_1:52838968-52838987 | Msa0555110:intron | 20.0% |
| !! | AGTAACAATGATAGTTAAAA+GGG | + | chr4_1:52838969-52838988 | Msa0555110:intron | 20.0% |
| !! | AATGTTTGAAGGAAAAAAAA+AGG | - | chr4_1:52839185-52839204 | None:intergenic | 20.0% |
| !! | GTGATATAATATAATGTGTT+AGG | - | chr4_1:52839234-52839253 | None:intergenic | 20.0% |
| !!! | TTTAAGATATATATGTCATG+AGG | - | chr4_1:52839460-52839479 | None:intergenic | 20.0% |
| !! | AGGAAGTGAATATAAAAATA+AGG | - | chr4_1:52839937-52839956 | None:intergenic | 20.0% |
| !!! | TTAAGGTTGTTGATTTTAAA+AGG | - | chr4_1:52840367-52840386 | None:intergenic | 20.0% |
| !!! | TTAACATTAGAACTGTTTTA+AGG | - | chr4_1:52840384-52840403 | None:intergenic | 20.0% |
| !!! | TTAACCCTTATATTTGTTTT+AGG | + | chr4_1:52840400-52840419 | Msa0555110:intron | 20.0% |
| !!! | AGGTTTTATTTGTCCTTTTA+TGG | + | chr4_1:52832528-52832547 | Msa0555110:CDS | 25.0% |
| !! | TTTATTTGTCCTTTTATGGT+CGG | + | chr4_1:52832532-52832551 | Msa0555110:CDS | 25.0% |
| ! | GTTAACTTTGATTGATTATC+TGG | + | chr4_1:52832960-52832979 | Msa0555110:intron | 25.0% |
| !!! | TTGTTAGTGTTGTTTTAATC+AGG | + | chr4_1:52833404-52833423 | Msa0555110:intron | 25.0% |
| ! | TAAAGTGAACTGAAATAGAA+TGG | - | chr4_1:52833616-52833635 | None:intergenic | 25.0% |
| ! | TGTCAATACTATATATAACC+TGG | - | chr4_1:52833686-52833705 | None:intergenic | 25.0% |
| !!! | AGGTTATATATAGTATTGAC+AGG | + | chr4_1:52833685-52833704 | Msa0555110:intron | 25.0% |
| ! | TTAAATTTAACCATCACCTA+TGG | + | chr4_1:52833726-52833745 | Msa0555110:intron | 25.0% |
| !!! | AATTTGGTAATGTGTAGAAT+AGG | + | chr4_1:52833782-52833801 | Msa0555110:intron | 25.0% |
| ! | TGTAGAATAGGATTGATATT+AGG | + | chr4_1:52833794-52833813 | Msa0555110:intron | 25.0% |
| !! | ATTGTTAGTGGATATCTTTA+GGG | - | chr4_1:52834782-52834801 | None:intergenic | 25.0% |
| !! | TATTGTTAGTGGATATCTTT+AGG | - | chr4_1:52834783-52834802 | None:intergenic | 25.0% |
| ! | TATCAGAAAACTATTGTTAG+TGG | - | chr4_1:52834794-52834813 | None:intergenic | 25.0% |
| ! | AAACAATTCAAATGTTCAGA+TGG | + | chr4_1:52835019-52835038 | Msa0555110:CDS | 25.0% |
| !!! | GTATTGTTGTTATTGCATTT+TGG | + | chr4_1:52835485-52835504 | Msa0555110:intron | 25.0% |
| ! | AAATCACCCTAAATCTTAAT+AGG | - | chr4_1:52836466-52836485 | None:intergenic | 25.0% |
| !! | ATTAAGATTTAGGGTGATTT+AGG | + | chr4_1:52836466-52836485 | Msa0555110:intron | 25.0% |
| ! | TGATTTAGGCCTTAAAAATA+GGG | + | chr4_1:52836480-52836499 | Msa0555110:intron | 25.0% |
| !!! | GGAAAATTTCCCTATTTTTA+AGG | - | chr4_1:52836492-52836511 | None:intergenic | 25.0% |
| ! | CAAAATATTGTGTCTGTTAT+TGG | + | chr4_1:52836719-52836738 | Msa0555110:intron | 25.0% |
| !! | TTTAAAACATCTCATGGAAA+CGG | - | chr4_1:52837582-52837601 | None:intergenic | 25.0% |
| !!! | GAAAGTGTCTATTTATAAGA+AGG | - | chr4_1:52837756-52837775 | None:intergenic | 25.0% |
| !!! | ATATTTGTTTCTGATAGAGA+GGG | - | chr4_1:52837807-52837826 | None:intergenic | 25.0% |
| ! | ATTGCATACAGTAAATAATC+TGG | - | chr4_1:52837883-52837902 | None:intergenic | 25.0% |
| !!! | AATTGTTTTTCTCATTACCT+TGG | - | chr4_1:52838084-52838103 | None:intergenic | 25.0% |
| !! | TTATGCCTTTGAAAATTTCA+TGG | + | chr4_1:52838311-52838330 | Msa0555110:CDS | 25.0% |
| !! | GAATTTTATGCATTCAACAA+AGG | + | chr4_1:52838383-52838402 | Msa0555110:CDS | 25.0% |
| !! | ATCTTTAGTTGAGATTTTGA+AGG | - | chr4_1:52838409-52838428 | None:intergenic | 25.0% |
| ! | ATAAAATCAAAATGATAGGC+AGG | - | chr4_1:52838435-52838454 | None:intergenic | 25.0% |
| ! | AGGCATAAAATCAAAATGAT+AGG | - | chr4_1:52838439-52838458 | None:intergenic | 25.0% |
| ! | GAAAAATGGTCAACATAATA+AGG | + | chr4_1:52838648-52838667 | Msa0555110:CDS | 25.0% |
| ! | TACTCTATATATATTCTTCG+TGG | + | chr4_1:52838932-52838951 | Msa0555110:intron | 25.0% |
| !! | ATAATATTGCAAAAAGTGCA+AGG | - | chr4_1:52839017-52839036 | None:intergenic | 25.0% |
| ! | TCTATTTGTTTGTAATTGAC+AGG | + | chr4_1:52839044-52839063 | Msa0555110:intron | 25.0% |
| ! | TTGTTGCTAACTATAAATCA+CGG | + | chr4_1:52839129-52839148 | Msa0555110:CDS | 25.0% |
| !!! | TCATCCTTTTACTTATTTTG+CGG | + | chr4_1:52839711-52839730 | Msa0555110:intron | 25.0% |
| ! | AAATCCGCAAAATAAGTAAA+AGG | - | chr4_1:52839718-52839737 | None:intergenic | 25.0% |
| ! | AATTATTTCCTCATAGGATA+TGG | + | chr4_1:52839959-52839978 | Msa0555110:intron | 25.0% |
| ! | CAATGTATGAATTACGTTAA+TGG | + | chr4_1:52840139-52840158 | Msa0555110:intron | 25.0% |
| ! | AGACATACAACATAATTAGA+GGG | - | chr4_1:52840195-52840214 | None:intergenic | 25.0% |
| !!! | TTGTTTTAGGAAATTACTGA+AGG | + | chr4_1:52840413-52840432 | Msa0555110:intron | 25.0% |
| ! | TTATTTGTCCTTTTATGGTC+GGG | + | chr4_1:52832533-52832552 | Msa0555110:CDS | 30.0% |
| AATATTGCCTCTTCAAAACT+TGG | - | chr4_1:52832599-52832618 | None:intergenic | 30.0% | |
| TATACATTGTCATGCCTATA+AGG | - | chr4_1:52832659-52832678 | None:intergenic | 30.0% | |
| TGTATAGCATTTGGTAGAAA+AGG | + | chr4_1:52832673-52832692 | Msa0555110:intron | 30.0% | |
| GTTGAATGGATGAAAAATAC+CGG | + | chr4_1:52832831-52832850 | Msa0555110:intron | 30.0% | |
| TTGAATGGATGAAAAATACC+GGG | + | chr4_1:52832832-52832851 | Msa0555110:intron | 30.0% | |
| GCATGATAAAATGCATTATG+AGG | + | chr4_1:52832857-52832876 | Msa0555110:intron | 30.0% | |
| ! | GCAGTATTTCTGAAAGAATT+AGG | + | chr4_1:52833233-52833252 | Msa0555110:intron | 30.0% |
| AACACATATTACAACCCAAA+AGG | - | chr4_1:52833377-52833396 | None:intergenic | 30.0% | |
| TGAACTGAAATAGAATGGAT+GGG | - | chr4_1:52833611-52833630 | None:intergenic | 30.0% | |
| !!! | TTTTACTGGTTTACATCCAT+AGG | - | chr4_1:52833745-52833764 | None:intergenic | 30.0% |
| GCTAATATCTAATTCAGTGT+TGG | + | chr4_1:52833821-52833840 | Msa0555110:intron | 30.0% | |
| TGATATATATTGCTATCGCA+CGG | - | chr4_1:52833884-52833903 | None:intergenic | 30.0% | |
| ! | AATAGGTGTAATTGCAGTTT+TGG | + | chr4_1:52833970-52833989 | Msa0555110:intron | 30.0% |
| AGTATGGTTGCATAAGATAT+GGG | - | chr4_1:52834299-52834318 | None:intergenic | 30.0% | |
| GAGAAATATTACCTTGAGTA+TGG | - | chr4_1:52834315-52834334 | None:intergenic | 30.0% | |
| AAAGGACCAGTTATAAGAAA+TGG | - | chr4_1:52834361-52834380 | None:intergenic | 30.0% | |
| ATAGCAATTTCATAACTCAC+AGG | + | chr4_1:52834448-52834467 | Msa0555110:intron | 30.0% | |
| ! | TTTGTCGTAATTAAGTTGTC+TGG | + | chr4_1:52834715-52834734 | Msa0555110:intron | 30.0% |
| CTGAACATTTGAATTGTTTG+CGG | - | chr4_1:52835018-52835037 | None:intergenic | 30.0% | |
| !!! | ATTTTTTCATGAGTCCGTAA+AGG | + | chr4_1:52835055-52835074 | Msa0555110:intron | 30.0% |
| ! | TGTTACGGATTAAACCTTTA+CGG | - | chr4_1:52835072-52835091 | None:intergenic | 30.0% |
| AATTGTCCATGTGAAAAAAC+AGG | - | chr4_1:52835327-52835346 | None:intergenic | 30.0% | |
| AAAGATATTGATCAATGACG+AGG | + | chr4_1:52835386-52835405 | Msa0555110:intron | 30.0% | |
| !!! | TGGTACTATTTTTATGTCGA+CGG | + | chr4_1:52835505-52835524 | Msa0555110:intron | 30.0% |
| TTAAATGTTGTTACCGTAAC+AGG | + | chr4_1:52835569-52835588 | Msa0555110:intron | 30.0% | |
| TAAATGTTGTTACCGTAACA+GGG | + | chr4_1:52835570-52835589 | Msa0555110:intron | 30.0% | |
| GTCGTGGAAATTGTTTAATA+TGG | + | chr4_1:52835598-52835617 | Msa0555110:intron | 30.0% | |
| TTAAACCTCTCAAAAAAGGT+GGG | - | chr4_1:52835823-52835842 | None:intergenic | 30.0% | |
| TTTAAACCTCTCAAAAAAGG+TGG | - | chr4_1:52835824-52835843 | None:intergenic | 30.0% | |
| AAAAATAGTTACTGGTGAAG+TGG | - | chr4_1:52835917-52835936 | None:intergenic | 30.0% | |
| ! | TACTAATGGATATGACTTAG+TGG | - | chr4_1:52835956-52835975 | None:intergenic | 30.0% |
| !! | TTAAAAAGGGCGTTTACTAA+TGG | - | chr4_1:52835970-52835989 | None:intergenic | 30.0% |
| ! | ATTTTCCACGTTTCTGATAT+AGG | + | chr4_1:52836303-52836322 | Msa0555110:intron | 30.0% |
| AAAATCCTATATCAGAAACG+TGG | - | chr4_1:52836311-52836330 | None:intergenic | 30.0% | |
| ! | ATTTTCCACGTTTCTGATAT+AGG | + | chr4_1:52836303-52836322 | Msa0555110:intron | 30.0% |
| AAAATCCTATATCAGAAACG+TGG | - | chr4_1:52836311-52836330 | None:intergenic | 30.0% | |
| GTGATTTAGGCCTTAAAAAT+AGG | + | chr4_1:52836479-52836498 | Msa0555110:intron | 30.0% | |
| !! | TTATCTAGCAGCTATTTTCA+AGG | - | chr4_1:52836617-52836636 | None:intergenic | 30.0% |
| TGTTATTGGACAACATAACA+TGG | + | chr4_1:52836733-52836752 | Msa0555110:intron | 30.0% | |
| TTCAGCTTAATTCACATGTT+TGG | - | chr4_1:52836789-52836808 | None:intergenic | 30.0% | |
| TATATTGGAACTTCAAGGTT+TGG | + | chr4_1:52836816-52836835 | Msa0555110:intron | 30.0% | |
| ATTCCTTCATCAAATCAAAC+CGG | - | chr4_1:52837085-52837104 | None:intergenic | 30.0% | |
| !! | TTTTGAAAACAGTCAGACTA+AGG | - | chr4_1:52837225-52837244 | None:intergenic | 30.0% |
| GGTCTACTTAAATTTCAAAC+AGG | - | chr4_1:52837263-52837282 | None:intergenic | 30.0% | |
| TGCATAGATCTTCTTCAAAT+TGG | - | chr4_1:52837284-52837303 | None:intergenic | 30.0% | |
| ATTTGAAGAAGATCTATGCA+TGG | + | chr4_1:52837284-52837303 | Msa0555110:CDS | 30.0% | |
| !!! | CAATTTTGGTTAACCTTTGA+AGG | + | chr4_1:52837329-52837348 | Msa0555110:intron | 30.0% |
| GTCTTTGCATCTTTAACAAA+AGG | + | chr4_1:52837362-52837381 | Msa0555110:intron | 30.0% | |
| ATAAGCACTTATACGATAAG+AGG | - | chr4_1:52837436-52837455 | None:intergenic | 30.0% | |
| GAAGAGAATTAGAAAGTTAC+TGG | - | chr4_1:52837733-52837752 | None:intergenic | 30.0% | |
| TTACTGTGAATAAGAACTTG+AGG | - | chr4_1:52837778-52837797 | None:intergenic | 30.0% | |
| !! | TATTTGTTTCTGATAGAGAG+GGG | - | chr4_1:52837806-52837825 | None:intergenic | 30.0% |
| !! | GATATTTGTTTCTGATAGAG+AGG | - | chr4_1:52837808-52837827 | None:intergenic | 30.0% |
| CTCTATCAGAAACAAATATC+AGG | + | chr4_1:52837808-52837827 | Msa0555110:intron | 30.0% | |
| ATGTGTATCACATCAATTGT+AGG | + | chr4_1:52837910-52837929 | Msa0555110:intron | 30.0% | |
| !! | AAAACAATTTTTAAGAGCGC+AGG | + | chr4_1:52838095-52838114 | Msa0555110:intron | 30.0% |
| !! | TGTTGTTTATGTCTTTTGAC+AGG | + | chr4_1:52838215-52838234 | Msa0555110:intron | 30.0% |
| ! | GTTGTTTATGTCTTTTGACA+GGG | + | chr4_1:52838216-52838235 | Msa0555110:intron | 30.0% |
| ACTTTGGTATCAAATGTTTG+CGG | - | chr4_1:52838263-52838282 | None:intergenic | 30.0% | |
| TCTATCTCAGACTTAAACTT+TGG | - | chr4_1:52838279-52838298 | None:intergenic | 30.0% | |
| ! | TTTAAGTCTGAGATAGAAGA+AGG | + | chr4_1:52838282-52838301 | Msa0555110:CDS | 30.0% |
| ! | AGCAACCATGAAATTTTCAA+AGG | - | chr4_1:52838319-52838338 | None:intergenic | 30.0% |
| TATGCCTTTCCAATCAATAT+TGG | + | chr4_1:52838452-52838471 | Msa0555110:CDS | 30.0% | |
| TGGTCAACATAATAAGGTTA+TGG | + | chr4_1:52838654-52838673 | Msa0555110:CDS | 30.0% | |
| TCAGTTCAAAAGAATTGACA+TGG | - | chr4_1:52838718-52838737 | None:intergenic | 30.0% | |
| ! | AGATTTTGTTGAGTCATGAT+TGG | - | chr4_1:52838864-52838883 | None:intergenic | 30.0% |
| AACTATCATTGTTACTATCC+AGG | - | chr4_1:52838965-52838984 | None:intergenic | 30.0% | |
| TTTGTAATTGACAGGAGAAA+TGG | + | chr4_1:52839052-52839071 | Msa0555110:intron | 30.0% | |
| TTGTAATTGACAGGAGAAAT+GGG | + | chr4_1:52839053-52839072 | Msa0555110:intron | 30.0% | |
| ! | ATCAGCATTCAACATCATTT+TGG | - | chr4_1:52839102-52839121 | None:intergenic | 30.0% |
| GATTTATAGTTAGCAACAAC+AGG | - | chr4_1:52839128-52839147 | None:intergenic | 30.0% | |
| TGAAGGAAAAAAAAAGGTCA+TGG | - | chr4_1:52839179-52839198 | None:intergenic | 30.0% | |
| TAGTGAAACATATACATAGC+AGG | - | chr4_1:52839210-52839229 | None:intergenic | 30.0% | |
| AAACATTGACAGAAATGTGT+TGG | + | chr4_1:52839502-52839521 | Msa0555110:intron | 30.0% | |
| AACCAAAAAATGCTATTCCA+AGG | + | chr4_1:52839647-52839666 | Msa0555110:CDS | 30.0% | |
| CTTAAACCTGAAAATGTGTT+TGG | - | chr4_1:52839750-52839769 | None:intergenic | 30.0% | |
| !!! | CAAACACATTTTCAGGTTTA+AGG | + | chr4_1:52839748-52839767 | Msa0555110:intron | 30.0% |
| TCCTCAAATTATTTCCTCAT+AGG | + | chr4_1:52839953-52839972 | Msa0555110:intron | 30.0% | |
| TCCTATGAGGAAATAATTTG+AGG | - | chr4_1:52839957-52839976 | None:intergenic | 30.0% | |
| TAGACATATTTGTGGACAAA+AGG | + | chr4_1:52839997-52840016 | Msa0555110:CDS | 30.0% | |
| ACATACAACATAATTAGAGG+GGG | - | chr4_1:52840193-52840212 | None:intergenic | 30.0% | |
| GACATACAACATAATTAGAG+GGG | - | chr4_1:52840194-52840213 | None:intergenic | 30.0% | |
| CAGACATACAACATAATTAG+AGG | - | chr4_1:52840196-52840215 | None:intergenic | 30.0% | |
| GGAAAACAAAATAGTGCAAA+AGG | - | chr4_1:52840342-52840361 | None:intergenic | 30.0% | |
| !!! | GGTTGTTGATTTTAAAAGGT+TGG | - | chr4_1:52840363-52840382 | None:intergenic | 30.0% |
| !! | TTTTAGGAAATTACTGAAGG+TGG | + | chr4_1:52840416-52840435 | Msa0555110:intron | 30.0% |
| !!! | TATTTTTGGCTCTTTAGTAG+TGG | - | chr4_1:52840573-52840592 | None:intergenic | 30.0% |
| !!! | AGCTTGACACATGTTATTTT+TGG | - | chr4_1:52840587-52840606 | None:intergenic | 30.0% |
| !!! | TGTATCACCAAGTTTTGAAG+AGG | + | chr4_1:52832589-52832608 | Msa0555110:intron | 35.0% |
| AGCATCTGTTACAACCTTAT+AGG | + | chr4_1:52832642-52832661 | Msa0555110:intron | 35.0% | |
| GCATGACAATGTATAGCATT+TGG | + | chr4_1:52832664-52832683 | Msa0555110:intron | 35.0% | |
| AGCATTTGGTAGAAAAGGAA+TGG | + | chr4_1:52832678-52832697 | Msa0555110:intron | 35.0% | |
| TGAATGGATGAAAAATACCG+GGG | + | chr4_1:52832833-52832852 | Msa0555110:intron | 35.0% | |
| TTTCCAGAAGAAAACCAGTT+TGG | + | chr4_1:52832887-52832906 | Msa0555110:intron | 35.0% | |
| !!! | TAACCAAACTGGTTTTCTTC+TGG | - | chr4_1:52832893-52832912 | None:intergenic | 35.0% |
| GAAGAAAACCAGTTTGGTTA+CGG | + | chr4_1:52832893-52832912 | Msa0555110:intron | 35.0% | |
| AAGAGAGGAAGCTAACAATA+AGG | + | chr4_1:52833115-52833134 | Msa0555110:CDS | 35.0% | |
| ACTGCTCATATCGATATGTT+GGG | - | chr4_1:52833218-52833237 | None:intergenic | 35.0% | |
| TACTGCTCATATCGATATGT+TGG | - | chr4_1:52833219-52833238 | None:intergenic | 35.0% | |
| ! | TTCTGAAAGAATTAGGAGTG+TGG | + | chr4_1:52833240-52833259 | Msa0555110:intron | 35.0% |
| TTCGATACACATTGTGAGAA+TGG | - | chr4_1:52833539-52833558 | None:intergenic | 35.0% | |
| GTGAACTGAAATAGAATGGA+TGG | - | chr4_1:52833612-52833631 | None:intergenic | 35.0% | |
| TATGAAGCTTAATTTCTGCC+AGG | + | chr4_1:52833665-52833684 | Msa0555110:intron | 35.0% | |
| !! | ATATAGTATTGACAGGACCA+AGG | + | chr4_1:52833692-52833711 | Msa0555110:intron | 35.0% |
| GATATATATTGCTATCGCAC+GGG | - | chr4_1:52833883-52833902 | None:intergenic | 35.0% | |
| TTCGCAAAATGGTGAAGATA+GGG | - | chr4_1:52833999-52834018 | None:intergenic | 35.0% | |
| TTTCGCAAAATGGTGAAGAT+AGG | - | chr4_1:52834000-52834019 | None:intergenic | 35.0% | |
| ! | TCTTCACCATTTTGCGAAAT+TGG | + | chr4_1:52834001-52834020 | Msa0555110:intron | 35.0% |
| AAGAGACCAATTTCGCAAAA+TGG | - | chr4_1:52834010-52834029 | None:intergenic | 35.0% | |
| TAATAGGGGAACCAAAATTG+TGG | - | chr4_1:52834044-52834063 | None:intergenic | 35.0% | |
| GAGTATGGTTGCATAAGATA+TGG | - | chr4_1:52834300-52834319 | None:intergenic | 35.0% | |
| ATCTTATGCAACCATACTCA+AGG | + | chr4_1:52834301-52834320 | Msa0555110:intron | 35.0% | |
| CAGAAGCCATTTCTTATAAC+TGG | + | chr4_1:52834352-52834371 | Msa0555110:intron | 35.0% | |
| GCAGAACATGCATTACAAAA+AGG | - | chr4_1:52834379-52834398 | None:intergenic | 35.0% | |
| ! | TATCAGCTTAGTGCCATTAA+AGG | - | chr4_1:52834608-52834627 | None:intergenic | 35.0% |
| ATAAGCTACCCATAAACGAT+GGG | - | chr4_1:52834748-52834767 | None:intergenic | 35.0% | |
| AATAAGCTACCCATAAACGA+TGG | - | chr4_1:52834749-52834768 | None:intergenic | 35.0% | |
| TCGTTTATGGGTAGCTTATT+TGG | + | chr4_1:52834749-52834768 | Msa0555110:intron | 35.0% | |
| ! | GGTCAGTCTTTGAAAAATGT+TGG | + | chr4_1:52835285-52835304 | Msa0555110:intron | 35.0% |
| TTGATGTCACATCAGTATCT+TGG | - | chr4_1:52835416-52835435 | None:intergenic | 35.0% | |
| TACTGATGTGACATCAAATG+TGG | + | chr4_1:52835419-52835438 | Msa0555110:CDS | 35.0% | |
| AAACCAAGTGCTACACATTA+CGG | - | chr4_1:52835461-52835480 | None:intergenic | 35.0% | |
| TACTGGTGAAGTGGTTAAAA+TGG | - | chr4_1:52835908-52835927 | None:intergenic | 35.0% | |
| !!! | GATCAGCTGGGTTTTAAAAA+GGG | - | chr4_1:52835983-52836002 | None:intergenic | 35.0% |
| ! | ATTCTGGAAAGAGAGGAAAA+GGG | - | chr4_1:52836005-52836024 | None:intergenic | 35.0% |
| ! | AATTCTGGAAAGAGAGGAAA+AGG | - | chr4_1:52836006-52836025 | None:intergenic | 35.0% |
| GCGTATATAACCTTCAATTC+TGG | - | chr4_1:52836021-52836040 | None:intergenic | 35.0% | |
| CAGAAAATCGAAGCAAAATG+GGG | - | chr4_1:52836094-52836113 | None:intergenic | 35.0% | |
| GCAGAAAATCGAAGCAAAAT+GGG | - | chr4_1:52836095-52836114 | None:intergenic | 35.0% | |
| AGCAGAAAATCGAAGCAAAA+TGG | - | chr4_1:52836096-52836115 | None:intergenic | 35.0% | |
| ! | ATTTTCCGCGTTTCTGATAT+AGG | + | chr4_1:52836377-52836396 | Msa0555110:intron | 35.0% |
| ! | TTGGAGAATGTTGATTGTGA+AGG | + | chr4_1:52836849-52836868 | Msa0555110:intron | 35.0% |
| GTGAACAATGGAAGTTTGAT+TGG | + | chr4_1:52836910-52836929 | Msa0555110:CDS | 35.0% | |
| GGTTTCAGTTTCTGCATAAT+AGG | + | chr4_1:52837044-52837063 | Msa0555110:CDS | 35.0% | |
| GCATAATAGGAAGTGAAAAC+AGG | + | chr4_1:52837057-52837076 | Msa0555110:CDS | 35.0% | |
| !! | GGTTTGATTTGATGAAGGAA+TGG | + | chr4_1:52837084-52837103 | Msa0555110:CDS | 35.0% |
| ACCACTAATGTAGAACAGAA+AGG | + | chr4_1:52837182-52837201 | Msa0555110:intron | 35.0% | |
| TCCTTTCTGTTCTACATTAG+TGG | - | chr4_1:52837186-52837205 | None:intergenic | 35.0% | |
| !!! | GTTCAGGTTGGTTACAATTT+TGG | + | chr4_1:52837315-52837334 | Msa0555110:intron | 35.0% |
| ! | TTGGTTAACCTTTGAAGGTT+TGG | + | chr4_1:52837334-52837353 | Msa0555110:intron | 35.0% |
| TCGTATAAGTGCTTATGTGT+AGG | + | chr4_1:52837440-52837459 | Msa0555110:intron | 35.0% | |
| AACCATGACTAATGTGTAGT+GGG | + | chr4_1:52837647-52837666 | Msa0555110:intron | 35.0% | |
| !! | AAAGTTACTGGTTTCTCATG+AGG | - | chr4_1:52837721-52837740 | None:intergenic | 35.0% |
| GTATCACATCAATTGTAGGA+TGG | + | chr4_1:52837914-52837933 | Msa0555110:intron | 35.0% | |
| TGACCATAGATGAATTACTC+TGG | - | chr4_1:52838003-52838022 | None:intergenic | 35.0% | |
| !!! | AGGAAGCATTCATATGGTTT+TGG | + | chr4_1:52838052-52838071 | Msa0555110:CDS | 35.0% |
| !!! | AAGCATTCATATGGTTTTGG+TGG | + | chr4_1:52838055-52838074 | Msa0555110:CDS | 35.0% |
| TAGTAGCTGCCAATATTGAT+TGG | - | chr4_1:52838464-52838483 | None:intergenic | 35.0% | |
| TATCGGACATGTTGTTGAAA+AGG | + | chr4_1:52838606-52838625 | Msa0555110:CDS | 35.0% | |
| ATCGGACATGTTGTTGAAAA+GGG | + | chr4_1:52838607-52838626 | Msa0555110:CDS | 35.0% | |
| GTGAAGGAAACTGAGAAAAA+TGG | + | chr4_1:52838634-52838653 | Msa0555110:CDS | 35.0% | |
| ! | GGCAAGCTGAAGAAATATTT+TGG | + | chr4_1:52838905-52838924 | Msa0555110:CDS | 35.0% |
| TATAATGTGAGCAGACTTGA+TGG | + | chr4_1:52839255-52839274 | Msa0555110:intron | 35.0% | |
| AGACTCAAAGGATGACAATT+GGG | + | chr4_1:52839355-52839374 | Msa0555110:CDS | 35.0% | |
| GGAATTAATTGAAGCAACTC+AGG | + | chr4_1:52839377-52839396 | Msa0555110:CDS | 35.0% | |
| ! | TTGATAATACCAGCCCAAAT+CGG | - | chr4_1:52839560-52839579 | None:intergenic | 35.0% |
| TCCAAAGTTATTACTGTTGC+TGG | + | chr4_1:52839598-52839617 | Msa0555110:CDS | 35.0% | |
| ACCAGCAACAGTAATAACTT+TGG | - | chr4_1:52839602-52839621 | None:intergenic | 35.0% | |
| AAAGTTATTACTGTTGCTGG+TGG | + | chr4_1:52839601-52839620 | Msa0555110:CDS | 35.0% | |
| !!! | TGCCTTGGAATAGCATTTTT+TGG | - | chr4_1:52839652-52839671 | None:intergenic | 35.0% |
| TGCATTTGAATTACTTGCCT+TGG | - | chr4_1:52839667-52839686 | None:intergenic | 35.0% | |
| ! | GACTATCCAAACACATTTTC+AGG | + | chr4_1:52839741-52839760 | Msa0555110:intron | 35.0% |
| CTAAAACATTGGAAACAGCA+CGG | - | chr4_1:52839826-52839845 | None:intergenic | 35.0% | |
| CACATTTCTGCCTAAAACAT+TGG | - | chr4_1:52839837-52839856 | None:intergenic | 35.0% | |
| ! | CAAATATGTCTAGTTCAGGT+GGG | - | chr4_1:52839989-52840008 | None:intergenic | 35.0% |
| ! | ACAAATATGTCTAGTTCAGG+TGG | - | chr4_1:52839990-52840009 | None:intergenic | 35.0% |
| ACCTGAACTAGACATATTTG+TGG | + | chr4_1:52839989-52840008 | Msa0555110:CDS | 35.0% | |
| ! | TCCACAAATATGTCTAGTTC+AGG | - | chr4_1:52839993-52840012 | None:intergenic | 35.0% |
| ! | AACCAGTTTTTGTCTCTTCA+TGG | + | chr4_1:52840113-52840132 | Msa0555110:CDS | 35.0% |
| ! | ACCAGTTTTTGTCTCTTCAT+GGG | + | chr4_1:52840114-52840133 | Msa0555110:CDS | 35.0% |
| TGTTGTATGTCTGCAATAGA+TGG | + | chr4_1:52840203-52840222 | Msa0555110:intron | 35.0% | |
| CATAATGATGTTGATGCAGT+TGG | + | chr4_1:52840246-52840265 | Msa0555110:CDS | 35.0% | |
| AGAAAAGGAATGGTTGTGTG+TGG | + | chr4_1:52832688-52832707 | Msa0555110:intron | 40.0% | |
| GAAAAGGAATGGTTGTGTGT+GGG | + | chr4_1:52832689-52832708 | Msa0555110:intron | 40.0% | |
| ACACAAGAGGCAATGTTGAA+TGG | + | chr4_1:52832817-52832836 | Msa0555110:intron | 40.0% | |
| ! | ATGCATTTTATCATGCTCCC+CGG | - | chr4_1:52832853-52832872 | None:intergenic | 40.0% |
| TTGATTATCTGGGTTGTCCA+TGG | + | chr4_1:52832971-52832990 | Msa0555110:intron | 40.0% | |
| AAATCCATTTGCAGCTTCCA+TGG | - | chr4_1:52832991-52833010 | None:intergenic | 40.0% | |
| !! | CAAATGGATTTTTGCCATGC+TGG | + | chr4_1:52833000-52833019 | Msa0555110:intron | 40.0% |
| GAGAAAACCAAACGCACAAA+AGG | - | chr4_1:52833029-52833048 | None:intergenic | 40.0% | |
| !!! | TTTGTGCGTTTGGTTTTCTC+TGG | + | chr4_1:52833029-52833048 | Msa0555110:intron | 40.0% |
| !!! | GTTTGGTTTTCTCTGGTGAA+TGG | + | chr4_1:52833036-52833055 | Msa0555110:intron | 40.0% |
| ATATGTTGGGCCATTAACAC+CGG | - | chr4_1:52833205-52833224 | None:intergenic | 40.0% | |
| !! | AGTGTGGCTTCTTTTGCTAT+GGG | + | chr4_1:52833256-52833275 | Msa0555110:intron | 40.0% |
| CAATGTTTCCATCGTTGTGT+CGG | + | chr4_1:52833295-52833314 | Msa0555110:intron | 40.0% | |
| !! | GATCATGTTTGCTGCCTTTT+GGG | + | chr4_1:52833360-52833379 | Msa0555110:intron | 40.0% |
| GAGAATGGAACTGGACTTAA+AGG | - | chr4_1:52833524-52833543 | None:intergenic | 40.0% | |
| ACACATTGTGAGAATGGAAC+TGG | - | chr4_1:52833533-52833552 | None:intergenic | 40.0% | |
| TGGTTTACATCCATAGGTGA+TGG | - | chr4_1:52833739-52833758 | None:intergenic | 40.0% | |
| TCGCAAAATGGTGAAGATAG+GGG | - | chr4_1:52833998-52834017 | None:intergenic | 40.0% | |
| GCTTCTGCTATTGTCATAAG+AGG | - | chr4_1:52834339-52834358 | None:intergenic | 40.0% | |
| GCTTGAACACTTGAGTTCAA+TGG | - | chr4_1:52834421-52834440 | None:intergenic | 40.0% | |
| ACGATATCATGGAGATTGAG+AGG | + | chr4_1:52834486-52834505 | Msa0555110:CDS | 40.0% | |
| ATATCATGGAGATTGAGAGG+TGG | + | chr4_1:52834489-52834508 | Msa0555110:CDS | 40.0% | |
| TATCATGGAGATTGAGAGGT+GGG | + | chr4_1:52834490-52834509 | Msa0555110:CDS | 40.0% | |
| TATTAGCAACACTTGTCACC+AGG | - | chr4_1:52834521-52834540 | None:intergenic | 40.0% | |
| GGCACTAAGCTGATACTTAA+TGG | + | chr4_1:52834613-52834632 | Msa0555110:intron | 40.0% | |
| ! | GTCGTAATTAAGTTGTCTGG+AGG | + | chr4_1:52834718-52834737 | Msa0555110:intron | 40.0% |
| AGAAGATGTGCACACAGAAA+AGG | + | chr4_1:52834848-52834867 | Msa0555110:intron | 40.0% | |
| GAAGATGTGCACACAGAAAA+GGG | + | chr4_1:52834849-52834868 | Msa0555110:intron | 40.0% | |
| AGACTCAAGTAGCAAGGTAA+GGG | - | chr4_1:52834955-52834974 | None:intergenic | 40.0% | |
| CACAGAGTCAATGCTATTAG+AGG | - | chr4_1:52835209-52835228 | None:intergenic | 40.0% | |
| !! | CTCTAATAGCATTGACTCTG+TGG | + | chr4_1:52835207-52835226 | Msa0555110:CDS | 40.0% |
| !! | ATTGACTCTGTGGTTGATGA+TGG | + | chr4_1:52835217-52835236 | Msa0555110:CDS | 40.0% |
| !!! | CTGTCTCCTGTTTTTTCACA+TGG | + | chr4_1:52835318-52835337 | Msa0555110:intron | 40.0% |
| TTTCCGTAATGTGTAGCACT+TGG | + | chr4_1:52835455-52835474 | Msa0555110:intron | 40.0% | |
| ! | ATTTTTATGTCGACGGACGT+TGG | + | chr4_1:52835512-52835531 | Msa0555110:intron | 40.0% |
| CTCTCAAAAAAGGTGGGATT+AGG | - | chr4_1:52835817-52835836 | None:intergenic | 40.0% | |
| !!! | CTAATCCCACCTTTTTTGAG+AGG | + | chr4_1:52835815-52835834 | Msa0555110:intron | 40.0% |
| !!! | GGATCAGCTGGGTTTTAAAA+AGG | - | chr4_1:52835984-52836003 | None:intergenic | 40.0% |
| TCCTCTCTTTCCAGAATTGA+AGG | + | chr4_1:52836008-52836027 | Msa0555110:intron | 40.0% | |
| ! | ACCTTCAATTCTGGAAAGAG+AGG | - | chr4_1:52836012-52836031 | None:intergenic | 40.0% |
| GAAGCAAAATGGGGAAGAAA+TGG | - | chr4_1:52836085-52836104 | None:intergenic | 40.0% | |
| CTCATCCTATATCAGAAACG+CGG | - | chr4_1:52836385-52836404 | None:intergenic | 40.0% | |
| TTATTTCCTTGGATCGTGCT+TGG | + | chr4_1:52836542-52836561 | Msa0555110:intron | 40.0% | |
| AAGGTTTGGATCATAGTGCT+TGG | + | chr4_1:52836830-52836849 | Msa0555110:intron | 40.0% | |
| GTTGATTGTGAAGGTTTGAC+CGG | + | chr4_1:52836858-52836877 | Msa0555110:intron | 40.0% | |
| TTGATTGTGAAGGTTTGACC+GGG | + | chr4_1:52836859-52836878 | Msa0555110:intron | 40.0% | |
| CATCATCAAAAATGAGACCC+CGG | - | chr4_1:52836880-52836899 | None:intergenic | 40.0% | |
| ! | CATCCACTCACATTTTCACT+GGG | - | chr4_1:52836964-52836983 | None:intergenic | 40.0% |
| TGGATGCAGTAAAGCTTCTT+TGG | + | chr4_1:52836978-52836997 | Msa0555110:intron | 40.0% | |
| GGATGCAGTAAAGCTTCTTT+GGG | + | chr4_1:52836979-52836998 | Msa0555110:intron | 40.0% | |
| GATGCAGTAAAGCTTCTTTG+GGG | + | chr4_1:52836980-52836999 | Msa0555110:intron | 40.0% | |
| TTTGATGAAGGAATGGCAAG+AGG | + | chr4_1:52837091-52837110 | Msa0555110:CDS | 40.0% | |
| GTGCAGCTTGAACAAAAACA+AGG | - | chr4_1:52837127-52837146 | None:intergenic | 40.0% | |
| !! | TGTTTTTGTTCAAGCTGCAC+AGG | + | chr4_1:52837127-52837146 | Msa0555110:CDS | 40.0% |
| CTGCACAGGTTAGACAATTT+AGG | + | chr4_1:52837141-52837160 | Msa0555110:intron | 40.0% | |
| AGAAGATCTATGCATGGTTC+AGG | + | chr4_1:52837290-52837309 | Msa0555110:CDS | 40.0% | |
| !! | AAGGAAGCTCTAGATCTGTT+TGG | + | chr4_1:52837381-52837400 | Msa0555110:intron | 40.0% |
| !! | TTGGAGAGTGGCTATTTTCA+AGG | - | chr4_1:52837629-52837648 | None:intergenic | 40.0% |
| CACTACACATTAGTCATGGT+TGG | - | chr4_1:52837648-52837667 | None:intergenic | 40.0% | |
| CAACCATGACTAATGTGTAG+TGG | + | chr4_1:52837646-52837665 | Msa0555110:intron | 40.0% | |
| ACCATGACTAATGTGTAGTG+GGG | + | chr4_1:52837648-52837667 | Msa0555110:intron | 40.0% | |
| !! | TGTAGTGGTGGCTATTTTCA+AGG | - | chr4_1:52837684-52837703 | None:intergenic | 40.0% |
| CAGCCAGAGTAATTCATCTA+TGG | + | chr4_1:52837997-52838016 | Msa0555110:CDS | 40.0% | |
| !! | AGAGGAAGGAAGCATTCATA+TGG | + | chr4_1:52838046-52838065 | Msa0555110:CDS | 40.0% |
| ! | GTTTATGTCTTTTGACAGGG+CGG | + | chr4_1:52838219-52838238 | Msa0555110:intron | 40.0% |
| TACCAACGACCAATCATACA+AGG | + | chr4_1:52838338-52838357 | Msa0555110:CDS | 40.0% | |
| ! | GTTGAGTTGCCTTGTATGAT+TGG | - | chr4_1:52838350-52838369 | None:intergenic | 40.0% |
| AGGCAACTCAACACAAGTAT+CGG | + | chr4_1:52838358-52838377 | Msa0555110:CDS | 40.0% | |
| ! | GCTGCCAATATTGATTGGAA+AGG | - | chr4_1:52838459-52838478 | None:intergenic | 40.0% |
| AATATTGGCAGCTACTAGAG+AGG | + | chr4_1:52838467-52838486 | Msa0555110:CDS | 40.0% | |
| !! | TGTTGAAAAGGGCATTGTGA+AGG | + | chr4_1:52838618-52838637 | Msa0555110:CDS | 40.0% |
| GGTTATGGATTTGACTCTTG+AGG | + | chr4_1:52838669-52838688 | Msa0555110:CDS | 40.0% | |
| ACAGAATCCATTGCACTTTG+TGG | + | chr4_1:52838804-52838823 | Msa0555110:CDS | 40.0% | |
| CAGAATCCATTGCACTTTGT+GGG | + | chr4_1:52838805-52838824 | Msa0555110:CDS | 40.0% | |
| ATTGATCCCACAAAGTGCAA+TGG | - | chr4_1:52838814-52838833 | None:intergenic | 40.0% | |
| !! | TGTGGGATCAATTTGCTGAA+AGG | + | chr4_1:52838822-52838841 | Msa0555110:CDS | 40.0% |
| TTGTTGAGTCATGATTGGCA+AGG | - | chr4_1:52838859-52838878 | None:intergenic | 40.0% | |
| GTGATTGTGATCCTACAACT+TGG | + | chr4_1:52838884-52838903 | Msa0555110:CDS | 40.0% | |
| ATTCTTCGTGGTATATAGCC+TGG | + | chr4_1:52838944-52838963 | Msa0555110:intron | 40.0% | |
| !!! | GGCGTATCGAATGCTTTTTT+TGG | + | chr4_1:52839074-52839093 | Msa0555110:CDS | 40.0% |
| CATAGCAGGCAAATGTTTGA+AGG | - | chr4_1:52839196-52839215 | None:intergenic | 40.0% | |
| CAGACTCAAAGGATGACAAT+TGG | + | chr4_1:52839354-52839373 | Msa0555110:CDS | 40.0% | |
| GACTCAAAGGATGACAATTG+GGG | + | chr4_1:52839356-52839375 | Msa0555110:CDS | 40.0% | |
| !!! | GAAATGTGTTGGCTCTGTTT+TGG | + | chr4_1:52839513-52839532 | Msa0555110:intron | 40.0% |
| !!! | CGTGCTGTTTCCAATGTTTT+AGG | + | chr4_1:52839824-52839843 | Msa0555110:CDS | 40.0% |
| TGGGTAAACCATATCCTATG+AGG | - | chr4_1:52839970-52839989 | None:intergenic | 40.0% | |
| ! | GGACAAAAGGATGCTGTTTA+AGG | + | chr4_1:52840010-52840029 | Msa0555110:CDS | 40.0% |
| ! | AAGGATGCTGTTTAAGGTTG+AGG | + | chr4_1:52840016-52840035 | Msa0555110:CDS | 40.0% |
| ! | ATGCTGTTTAAGGTTGAGGT+CGG | + | chr4_1:52840020-52840039 | Msa0555110:CDS | 40.0% |
| TCCCATGAAGAGACAAAAAC+TGG | - | chr4_1:52840118-52840137 | None:intergenic | 40.0% | |
| AATGACAAGGACGAGTTTGT+TGG | + | chr4_1:52840446-52840465 | Msa0555110:CDS | 40.0% | |
| TTCCCAATGAGTTGCTAGTT+GGG | - | chr4_1:52840490-52840509 | None:intergenic | 40.0% | |
| TTTCCCAATGAGTTGCTAGT+TGG | - | chr4_1:52840491-52840510 | None:intergenic | 40.0% | |
| CAGATGCTCGCTTGATAAAC+AGG | - | chr4_1:52832630-52832649 | None:intergenic | 45.0% | |
| ACTCAAAATGCAGCCTCTGA+TGG | + | chr4_1:52832788-52832807 | Msa0555110:intron | 45.0% | |
| AGCATACTCCGTAACCAAAC+TGG | - | chr4_1:52832904-52832923 | None:intergenic | 45.0% | |
| ! | GTTACATTTGCTGCTGAGAG+AGG | + | chr4_1:52832934-52832953 | Msa0555110:intron | 45.0% |
| TTGTCCATGGAAGCTGCAAA+TGG | + | chr4_1:52832984-52833003 | Msa0555110:intron | 45.0% | |
| ! | ACTTACGGGCATTGCATAGT+TGG | - | chr4_1:52833064-52833083 | None:intergenic | 45.0% |
| ACTATGCAATGCCCGTAAGT+TGG | + | chr4_1:52833064-52833083 | Msa0555110:intron | 45.0% | |
| TGCTTCCTGCAACCAACTTA+CGG | - | chr4_1:52833079-52833098 | None:intergenic | 45.0% | |
| !! | TGTGAAGCTTGGTGTAAGAG+AGG | + | chr4_1:52833100-52833119 | Msa0555110:CDS | 45.0% |
| ATCTCAGCACCAACAATGGT+GGG | - | chr4_1:52833157-52833176 | None:intergenic | 45.0% | |
| GTTGATCTCAGCACCAACAA+TGG | - | chr4_1:52833161-52833180 | None:intergenic | 45.0% | |
| ! | GAGTGTGGCTTCTTTTGCTA+TGG | + | chr4_1:52833255-52833274 | Msa0555110:intron | 45.0% |
| !! | GGATCATGTTTGCTGCCTTT+TGG | + | chr4_1:52833359-52833378 | Msa0555110:intron | 45.0% |
| CGCAAAATGGTGAAGATAGG+GGG | - | chr4_1:52833997-52834016 | None:intergenic | 45.0% | |
| CCATGATATCGTGCAACACA+TGG | - | chr4_1:52834478-52834497 | None:intergenic | 45.0% | |
| CCATGTGTTGCACGATATCA+TGG | + | chr4_1:52834475-52834494 | Msa0555110:CDS | 45.0% | |
| ATCATGGAGATTGAGAGGTG+GGG | + | chr4_1:52834491-52834510 | Msa0555110:CDS | 45.0% | |
| CACGGGTGCGCTAAATATAT+GGG | + | chr4_1:52834571-52834590 | Msa0555110:intron | 45.0% | |
| GGCGTTGCTAATGCCTTTAA+TGG | + | chr4_1:52834592-52834611 | Msa0555110:intron | 45.0% | |
| GAGACTCAAGTAGCAAGGTA+AGG | - | chr4_1:52834956-52834975 | None:intergenic | 45.0% | |
| TTCTGTTGTCGAGCTTAGTG+TGG | + | chr4_1:52834983-52835002 | Msa0555110:CDS | 45.0% | |
| TGTTTGTCGCAAATGTCTGC+AGG | + | chr4_1:52835105-52835124 | Msa0555110:intron | 45.0% | |
| ATGTCTGCAGGATGTACCAT+AGG | + | chr4_1:52835117-52835136 | Msa0555110:intron | 45.0% | |
| CTCATGCAGCAATACATGTG+TGG | + | chr4_1:52835147-52835166 | Msa0555110:CDS | 45.0% | |
| !!! | TTAGCACCTGTTTTGGTGGT+TGG | - | chr4_1:52835181-52835200 | None:intergenic | 45.0% |
| TCACAAAACCTACCAGAGTC+AGG | + | chr4_1:52835263-52835282 | Msa0555110:CDS | 45.0% | |
| CACAAAACCTACCAGAGTCA+GGG | + | chr4_1:52835264-52835283 | Msa0555110:CDS | 45.0% | |
| AATTGTACGTCGCAGTATCG+AGG | + | chr4_1:52835343-52835362 | Msa0555110:intron | 45.0% | |
| ! | ATTGTACGTCGCAGTATCGA+GGG | + | chr4_1:52835344-52835363 | Msa0555110:intron | 45.0% |
| ! | AGTATCGAGGGTTACTTCGA+GGG | + | chr4_1:52835356-52835375 | Msa0555110:intron | 45.0% |
| ! | GTTAAACAGTGGCGGGATTA+GGG | - | chr4_1:52835795-52835814 | None:intergenic | 45.0% |
| GGATTAGGTTAAACAGTGGC+GGG | - | chr4_1:52835802-52835821 | None:intergenic | 45.0% | |
| GGGATTAGGTTAAACAGTGG+CGG | - | chr4_1:52835803-52835822 | None:intergenic | 45.0% | |
| GGTGGGATTAGGTTAAACAG+TGG | - | chr4_1:52835806-52835825 | None:intergenic | 45.0% | |
| AAGTGGTTAAAATGGCTGGC+TGG | - | chr4_1:52835900-52835919 | None:intergenic | 45.0% | |
| GGTGAAGTGGTTAAAATGGC+TGG | - | chr4_1:52835904-52835923 | None:intergenic | 45.0% | |
| ! | TCGTTTGAGATCGCAGGAAT+GGG | - | chr4_1:52836054-52836073 | None:intergenic | 45.0% |
| TGATTGTGAAGGTTTGACCG+GGG | + | chr4_1:52836860-52836879 | Msa0555110:intron | 45.0% | |
| TGCAGTGTGTCAGTGAACAA+TGG | + | chr4_1:52836898-52836917 | Msa0555110:intron | 45.0% | |
| ACACCATCGCCTATTGGATT+TGG | + | chr4_1:52836937-52836956 | Msa0555110:CDS | 45.0% | |
| TCACTGGGTCCAAATCCAAT+AGG | - | chr4_1:52836949-52836968 | None:intergenic | 45.0% | |
| ! | GCATCCACTCACATTTTCAC+TGG | - | chr4_1:52836965-52836984 | None:intergenic | 45.0% |
| ! | CATCAGTCATTTGCTGCTCA+TGG | + | chr4_1:52837023-52837042 | Msa0555110:intron | 45.0% |
| TAGGAAGTGAAAACAGGCAC+CGG | + | chr4_1:52837063-52837082 | Msa0555110:CDS | 45.0% | |
| !! | GCACCGGTTTGATTTGATGA+AGG | + | chr4_1:52837079-52837098 | Msa0555110:CDS | 45.0% |
| GACTCAAGCCAAACCTTCAA+AGG | - | chr4_1:52837345-52837364 | None:intergenic | 45.0% | |
| TGGCGTAAATGAGGACAGTT+TGG | - | chr4_1:52837494-52837513 | None:intergenic | 45.0% | |
| CATTAGTCATGGTTGGAGAG+TGG | - | chr4_1:52837641-52837660 | None:intergenic | 45.0% | |
| ACCCCACTACACATTAGTCA+TGG | - | chr4_1:52837652-52837671 | None:intergenic | 45.0% | |
| TAGCCACCACTACAAGTCAT+TGG | + | chr4_1:52837690-52837709 | Msa0555110:intron | 45.0% | |
| ! | GAACGACCAATGACTTGTAG+TGG | - | chr4_1:52837699-52837718 | None:intergenic | 45.0% |
| GCAATCTCTGACATTGTGTG+TGG | + | chr4_1:52837954-52837973 | Msa0555110:CDS | 45.0% | |
| GATGAATTACTCTGGCTGTC+AGG | - | chr4_1:52837995-52838014 | None:intergenic | 45.0% | |
| ATGAATGCTTCCTTCCTCTG+AGG | - | chr4_1:52838045-52838064 | None:intergenic | 45.0% | |
| !!! | TATGGTTTTGGTGGATGCCA+AGG | + | chr4_1:52838064-52838083 | Msa0555110:CDS | 45.0% |
| ! | TGCCTTGTATGATTGGTCGT+TGG | - | chr4_1:52838343-52838362 | None:intergenic | 45.0% |
| ACTAGAGAGGACAAGTTGCT+TGG | + | chr4_1:52838480-52838499 | Msa0555110:CDS | 45.0% | |
| TCTTCAGCTTGCCAAGTTGT+AGG | - | chr4_1:52838898-52838917 | None:intergenic | 45.0% | |
| TAACGACTGGAGTTAGCTGA+AGG | - | chr4_1:52839287-52839306 | None:intergenic | 45.0% | |
| GCAGTCATTTGACTAACGAC+TGG | - | chr4_1:52839300-52839319 | None:intergenic | 45.0% | |
| ! | TCAGATAGGGAGAGTACAAC+AGG | - | chr4_1:52839324-52839343 | None:intergenic | 45.0% |
| CTGCAGTAGATCGTCAGATA+GGG | - | chr4_1:52839337-52839356 | None:intergenic | 45.0% | |
| TCTGCAGTAGATCGTCAGAT+AGG | - | chr4_1:52839338-52839357 | None:intergenic | 45.0% | |
| ACGATCTACTGCAGACTCAA+AGG | + | chr4_1:52839343-52839362 | Msa0555110:CDS | 45.0% | |
| ATGTGAGCTTGAGACCGATT+TGG | + | chr4_1:52839543-52839562 | Msa0555110:CDS | 45.0% | |
| ! | TGTGAGCTTGAGACCGATTT+GGG | + | chr4_1:52839544-52839563 | Msa0555110:CDS | 45.0% |
| GTCCAAGTGATCGACAATAC+AGG | + | chr4_1:52839776-52839795 | Msa0555110:CDS | 45.0% | |
| AGCCTGTATTGTCGATCACT+TGG | - | chr4_1:52839781-52839800 | None:intergenic | 45.0% | |
| CAGAAATGTGCAAGATCTGC+TGG | + | chr4_1:52839847-52839866 | Msa0555110:CDS | 45.0% | |
| GCAAGATCTGCTGGATTCAA+TGG | + | chr4_1:52839856-52839875 | Msa0555110:CDS | 45.0% | |
| ATGCCAATCTCTTTCGGAAC+TGG | + | chr4_1:52840045-52840064 | Msa0555110:CDS | 45.0% | |
| !! | TGTTGATGCAGTTGGTGAGA+CGG | + | chr4_1:52840254-52840273 | Msa0555110:CDS | 45.0% |
| AGGTGGTGACTCAAATGACA+AGG | + | chr4_1:52840433-52840452 | Msa0555110:CDS | 45.0% | |
| ACCCCAACTAGCAACTCATT+GGG | + | chr4_1:52840485-52840504 | Msa0555110:CDS | 45.0% | |
| TCCCAATGAGTTGCTAGTTG+GGG | - | chr4_1:52840489-52840508 | None:intergenic | 45.0% | |
| CTAGCAACTCATTGGGAAAG+AGG | + | chr4_1:52840492-52840511 | Msa0555110:CDS | 45.0% | |
| TCTGCTGATGCTATCGATGT+TGG | + | chr4_1:52840515-52840534 | Msa0555110:CDS | 45.0% | |
| ! | TTGTCCTTTTATGGTCGGGC+TGG | + | chr4_1:52832537-52832556 | Msa0555110:CDS | 50.0% |
| ! | TGTCCTTTTATGGTCGGGCT+GGG | + | chr4_1:52832538-52832557 | Msa0555110:CDS | 50.0% |
| TTACCCAGCCCGACCATAAA+AGG | - | chr4_1:52832544-52832563 | None:intergenic | 50.0% | |
| !! | CGGTTTTGTGGTGGCAAGAA+AGG | + | chr4_1:52832728-52832747 | Msa0555110:CDS | 50.0% |
| GGTGCACTACTCTTCAGTCT+TGG | - | chr4_1:52832766-52832785 | None:intergenic | 50.0% | |
| !! | CAGAGGCTGCATTTTGAGTC+TGG | - | chr4_1:52832787-52832806 | None:intergenic | 50.0% |
| CTTGTGTTGCAGTCCATCAG+AGG | - | chr4_1:52832804-52832823 | None:intergenic | 50.0% | |
| !! | CTGATGGACTGCAACACAAG+AGG | + | chr4_1:52832804-52832823 | Msa0555110:intron | 50.0% |
| ! | CTGGTGACCTTTTGTGCGTT+TGG | + | chr4_1:52833019-52833038 | Msa0555110:intron | 50.0% |
| !! | AATGCCCGTAAGTTGGTTGC+AGG | + | chr4_1:52833071-52833090 | Msa0555110:intron | 50.0% |
| GCTTCCTGCAACCAACTTAC+GGG | - | chr4_1:52833078-52833097 | None:intergenic | 50.0% | |
| TCTCAGCACCAACAATGGTG+GGG | - | chr4_1:52833156-52833175 | None:intergenic | 50.0% | |
| GATCTCAGCACCAACAATGG+TGG | - | chr4_1:52833158-52833177 | None:intergenic | 50.0% | |
| ! | ACTACACGCACCGGTGTTAA+TGG | + | chr4_1:52833192-52833211 | Msa0555110:intron | 50.0% |
| ! | GTTTCCATCGTTGTGTCGGT+TGG | + | chr4_1:52833299-52833318 | Msa0555110:intron | 50.0% |
| TACACCAACCGACACAACGA+TGG | - | chr4_1:52833306-52833325 | None:intergenic | 50.0% | |
| !! | TTGTGTCGGTTGGTGTAGTC+TGG | + | chr4_1:52833309-52833328 | Msa0555110:intron | 50.0% |
| !! | TGTGTCGGTTGGTGTAGTCT+GGG | + | chr4_1:52833310-52833329 | Msa0555110:intron | 50.0% |
| ATCGCACGGGTCTCTTATAG+TGG | - | chr4_1:52833870-52833889 | None:intergenic | 50.0% | |
| ATGCTCATCATTGACCCGTG+CGG | + | chr4_1:52834545-52834564 | Msa0555110:intron | 50.0% | |
| GCACGGGTGCGCTAAATATA+TGG | + | chr4_1:52834570-52834589 | Msa0555110:intron | 50.0% | |
| ATGTCGCTGCGTACATGACA+AGG | + | chr4_1:52834647-52834666 | Msa0555110:intron | 50.0% | |
| GAGGTCCTCCCATCGTTTAT+GGG | + | chr4_1:52834737-52834756 | Msa0555110:intron | 50.0% | |
| AGCTACCCATAAACGATGGG+AGG | - | chr4_1:52834745-52834764 | None:intergenic | 50.0% | |
| GTAGCGAGACTCAAGTAGCA+AGG | - | chr4_1:52834961-52834980 | None:intergenic | 50.0% | |
| GTTGTCGAGCTTAGTGTGGA+TGG | + | chr4_1:52834987-52835006 | Msa0555110:CDS | 50.0% | |
| GACACACCAACCACCAAAAC+AGG | + | chr4_1:52835172-52835191 | Msa0555110:CDS | 50.0% | |
| !! | CCTCTTAGCACCTGTTTTGG+TGG | - | chr4_1:52835185-52835204 | None:intergenic | 50.0% |
| CCACCAAAACAGGTGCTAAG+AGG | + | chr4_1:52835182-52835201 | Msa0555110:CDS | 50.0% | |
| ! | GGACCTCTTAGCACCTGTTT+TGG | - | chr4_1:52835188-52835207 | None:intergenic | 50.0% |
| !! | GACTCTGTGGTTGATGATGG+TGG | + | chr4_1:52835220-52835239 | Msa0555110:CDS | 50.0% |
| !! | GTTGATGATGGTGGTGAAGC+TGG | + | chr4_1:52835229-52835248 | Msa0555110:CDS | 50.0% |
| !! | TAGGTTTTGTGACCGACGTC+TGG | - | chr4_1:52835255-52835274 | None:intergenic | 50.0% |
| TCAAAGACTGACCCTGACTC+TGG | - | chr4_1:52835278-52835297 | None:intergenic | 50.0% | |
| ! | CAGTATCGAGGGTTACTTCG+AGG | + | chr4_1:52835355-52835374 | Msa0555110:intron | 50.0% |
| ! | GGTTAAACAGTGGCGGGATT+AGG | - | chr4_1:52835796-52835815 | None:intergenic | 50.0% |
| GATTCGAACTCGCGACCAAT+TGG | + | chr4_1:52835872-52835891 | Msa0555110:intron | 50.0% | |
| ! | AATGGCTGGCTGGAACCAAT+TGG | - | chr4_1:52835890-52835909 | None:intergenic | 50.0% |
| GAGAGGAAAAGGGATCAGCT+GGG | - | chr4_1:52835995-52836014 | None:intergenic | 50.0% | |
| AGAGAGGAAAAGGGATCAGC+TGG | - | chr4_1:52835996-52836015 | None:intergenic | 50.0% | |
| GAGATCGCAGGAATGGGAAT+TGG | - | chr4_1:52836048-52836067 | None:intergenic | 50.0% | |
| ! | GTCGTTTGAGATCGCAGGAA+TGG | - | chr4_1:52836055-52836074 | None:intergenic | 50.0% |
| TCCTGCGATCTCAAACGACA+AGG | + | chr4_1:52836056-52836075 | Msa0555110:intron | 50.0% | |
| TTTCCTTGGATCGTGCTTGG+TGG | + | chr4_1:52836545-52836564 | Msa0555110:intron | 50.0% | |
| AAACCACCAAGCACGATCCA+AGG | - | chr4_1:52836551-52836570 | None:intergenic | 50.0% | |
| GGATCAACACCATCGCCTAT+TGG | + | chr4_1:52836931-52836950 | Msa0555110:CDS | 50.0% | |
| GGTCCAAATCCAATAGGCGA+TGG | - | chr4_1:52836943-52836962 | None:intergenic | 50.0% | |
| GGACCCAGTGAAAATGTGAG+TGG | + | chr4_1:52836958-52836977 | Msa0555110:intron | 50.0% | |
| ! | GCAGTAAAGCTTCTTTGGGG+TGG | + | chr4_1:52836983-52837002 | Msa0555110:intron | 50.0% |
| !! | GTAAAGCTTCTTTGGGGTGG+TGG | + | chr4_1:52836986-52837005 | Msa0555110:intron | 50.0% |
| !!! | CTTCTTTGGGGTGGTGGTTT+TGG | + | chr4_1:52836992-52837011 | Msa0555110:intron | 50.0% |
| !!! | GGGTGGTGGTTTTGGCTTTT+GGG | + | chr4_1:52837000-52837019 | Msa0555110:intron | 50.0% |
| ATGCATGGTTCAGGCTGTTC+AGG | + | chr4_1:52837299-52837318 | Msa0555110:CDS | 50.0% | |
| ATGGTTCAGGCTGTTCAGGT+TGG | + | chr4_1:52837303-52837322 | Msa0555110:intron | 50.0% | |
| ! | CGACCAATGACTTGTAGTGG+TGG | - | chr4_1:52837696-52837715 | None:intergenic | 50.0% |
| !! | CTTCCTCTGAGGTGTTGGTA+CGG | - | chr4_1:52838034-52838053 | None:intergenic | 50.0% |
| !!! | GTGTTGGCTCTGTTTTGGTG+AGG | + | chr4_1:52839518-52839537 | Msa0555110:CDS | 50.0% |
| AGCACGGTCAAACAGTGTGA+AGG | - | chr4_1:52839810-52839829 | None:intergenic | 50.0% | |
| TCGGCGATGCCAATCTCTTT+CGG | + | chr4_1:52840039-52840058 | Msa0555110:CDS | 50.0% | |
| ACGCCAGTTCCGAAAGAGAT+TGG | - | chr4_1:52840051-52840070 | None:intergenic | 50.0% | |
| GACGGCTGACAAAAATGCAC+TGG | + | chr4_1:52840272-52840291 | Msa0555110:CDS | 50.0% | |
| CAATGAGTTGCTAGTTGGGG+TGG | - | chr4_1:52840486-52840505 | None:intergenic | 50.0% | |
| CACCCCAACTAGCAACTCAT+TGG | + | chr4_1:52840484-52840503 | Msa0555110:CDS | 50.0% | |
| GCTATCGATGTTGGTACAGC+AGG | + | chr4_1:52840524-52840543 | Msa0555110:CDS | 50.0% | |
| ACAGCAGGTGAAGATGACAG+TGG | + | chr4_1:52840539-52840558 | Msa0555110:CDS | 50.0% | |
| TGGGAAAGCTGCAGCAGGAA+CGG | + | chr4_1:52832708-52832727 | Msa0555110:CDS | 55.0% | |
| ! | CTGCAGCAGGAACGGTTTTG+TGG | + | chr4_1:52832716-52832735 | Msa0555110:CDS | 55.0% |
| !! | CAGCAGGAACGGTTTTGTGG+TGG | + | chr4_1:52832719-52832738 | Msa0555110:CDS | 55.0% |
| CGCACAAAAGGTCACCAGCA+TGG | - | chr4_1:52833017-52833036 | None:intergenic | 55.0% | |
| !! | GCAGGAAGCACTGTGAAGCT+TGG | + | chr4_1:52833089-52833108 | Msa0555110:intron | 55.0% |
| ! | TCAGCACCAACAATGGTGGG+GGG | - | chr4_1:52833154-52833173 | None:intergenic | 55.0% |
| CTCAGCACCAACAATGGTGG+GGG | - | chr4_1:52833155-52833174 | None:intergenic | 55.0% | |
| TGCCAAGCAACTACACGCAC+CGG | + | chr4_1:52833183-52833202 | Msa0555110:intron | 55.0% | |
| ATTGAGAGGTGGGGTTTGCC+TGG | + | chr4_1:52834500-52834519 | Msa0555110:CDS | 55.0% | |
| GGAGGTCCTCCCATCGTTTA+TGG | + | chr4_1:52834736-52834755 | Msa0555110:intron | 55.0% | |
| GCAGGATGTACCATAGGCTG+AGG | + | chr4_1:52835123-52835142 | Msa0555110:intron | 55.0% | |
| CTGCATGAGTCCTCAGCCTA+TGG | - | chr4_1:52835136-52835155 | None:intergenic | 55.0% | |
| AGACTGACCCTGACTCTGGT+AGG | - | chr4_1:52835274-52835293 | None:intergenic | 55.0% | |
| TCGAGGGTTACTTCGAGGGA+TGG | + | chr4_1:52835360-52835379 | Msa0555110:intron | 55.0% | |
| CCACGACATCGACCCTGTTA+CGG | - | chr4_1:52835585-52835604 | None:intergenic | 55.0% | |
| GTATGACCCGTGCGTTAGCA+CGG | + | chr4_1:52835726-52835745 | Msa0555110:intron | 55.0% | |
| TATGACCCGTGCGTTAGCAC+GGG | + | chr4_1:52835727-52835746 | Msa0555110:intron | 55.0% | |
| ! | GCCTTGTCGTTTGAGATCGC+AGG | - | chr4_1:52836060-52836079 | None:intergenic | 55.0% |
| !!! | GGGGTGGTGGTTTTGGCTTT+TGG | + | chr4_1:52836999-52837018 | Msa0555110:intron | 55.0% |
| !! | TCTGAGGTGTTGGTACGGTC+TGG | - | chr4_1:52838029-52838048 | None:intergenic | 55.0% |
| AGACCGTACCAACACCTCAG+AGG | + | chr4_1:52838028-52838047 | Msa0555110:CDS | 55.0% | |
| CGTACCAACACCTCAGAGGA+AGG | + | chr4_1:52838032-52838051 | Msa0555110:CDS | 55.0% | |
| !! | GCTTCCTTCCTCTGAGGTGT+TGG | - | chr4_1:52838039-52838058 | None:intergenic | 55.0% |
| !! | AGCTTGAGACCGATTTGGGC+TGG | + | chr4_1:52839548-52839567 | Msa0555110:CDS | 55.0% |
| GTGTGTGGGAAAGCTGCAGC+AGG | + | chr4_1:52832703-52832722 | Msa0555110:CDS | 60.0% | |
| TCTCTGCCCCCCACCATTGT+TGG | + | chr4_1:52833145-52833164 | Msa0555110:intron | 60.0% | |
| CACCGGTGCGTGTAGTTGCT+TGG | - | chr4_1:52833188-52833207 | None:intergenic | 60.0% | |
| CATTGACCCGTGCGGTAGCA+CGG | + | chr4_1:52834553-52834572 | Msa0555110:intron | 60.0% | |
| ATTGACCCGTGCGGTAGCAC+GGG | + | chr4_1:52834554-52834573 | Msa0555110:intron | 60.0% | |
| TGGTGAAGCTGGCCAGACGT+CGG | + | chr4_1:52835240-52835259 | Msa0555110:CDS | 60.0% | |
| CCGTAACAGGGTCGATGTCG+TGG | + | chr4_1:52835582-52835601 | Msa0555110:intron | 60.0% | |
| ATCGACCCGTGCTAACGCAC+GGG | - | chr4_1:52835735-52835754 | None:intergenic | 60.0% | |
| CATCGACCCGTGCTAACGCA+CGG | - | chr4_1:52835736-52835755 | None:intergenic | 60.0% | |
| CGTGCGTTAGCACGGGTCGA+TGG | + | chr4_1:52835734-52835753 | Msa0555110:intron | 65.0% | |
| AGCGCACCCGTGCTACCGCA+CGG | - | chr4_1:52834563-52834582 | None:intergenic | 70.0% | |
| GCGCACCCGTGCTACCGCAC+GGG | - | chr4_1:52834562-52834581 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 52832514 | 52840622 | 52832514 | ID=Msa0555110;Name=Msa0555110 |
| chr4_1 | mRNA | 52832514 | 52840622 | 52832514 | ID=Msa0555110-mRNA-1;Parent=Msa0555110;Name=Msa0555110-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0|0|0.42|1|1|21|0|781 |
| chr4_1 | exon | 52832514 | 52832559 | 52832514 | ID=Msa0555110-mRNA-1:exon:15337;Parent=Msa0555110-mRNA-1 |
| chr4_1 | exon | 52832690 | 52832749 | 52832690 | ID=Msa0555110-mRNA-1:exon:15338;Parent=Msa0555110-mRNA-1 |
| chr4_1 | exon | 52833093 | 52833136 | 52833093 | ID=Msa0555110-mRNA-1:exon:15339;Parent=Msa0555110-mRNA-1 |
| chr4_1 | exon | 52834470 | 52834521 | 52834470 | ID=Msa0555110-mRNA-1:exon:15340;Parent=Msa0555110-mRNA-1 |
| chr4_1 | exon | 52834928 | 52835040 | 52834928 | ID=Msa0555110-mRNA-1:exon:15341;Parent=Msa0555110-mRNA-1 |
| chr4_1 | exon | 52835139 | 52835285 | 52835139 | ID=Msa0555110-mRNA-1:exon:15342;Parent=Msa0555110-mRNA-1 |
| chr4_1 | exon | 52835390 | 52835466 | 52835390 | ID=Msa0555110-mRNA-1:exon:15343;Parent=Msa0555110-mRNA-1 |
| chr4_1 | exon | 52836903 | 52836972 | 52836903 | ID=Msa0555110-mRNA-1:exon:15344;Parent=Msa0555110-mRNA-1 |
| chr4_1 | exon | 52837029 | 52837148 | 52837029 | ID=Msa0555110-mRNA-1:exon:15345;Parent=Msa0555110-mRNA-1 |
| chr4_1 | exon | 52837280 | 52837320 | 52837280 | ID=Msa0555110-mRNA-1:exon:15346;Parent=Msa0555110-mRNA-1 |
| chr4_1 | exon | 52837932 | 52838085 | 52837932 | ID=Msa0555110-mRNA-1:exon:15347;Parent=Msa0555110-mRNA-1 |
| chr4_1 | exon | 52838237 | 52838501 | 52838237 | ID=Msa0555110-mRNA-1:exon:15348;Parent=Msa0555110-mRNA-1 |
| chr4_1 | exon | 52838602 | 52838698 | 52838602 | ID=Msa0555110-mRNA-1:exon:15349;Parent=Msa0555110-mRNA-1 |
| chr4_1 | exon | 52838799 | 52838926 | 52838799 | ID=Msa0555110-mRNA-1:exon:15350;Parent=Msa0555110-mRNA-1 |
| chr4_1 | exon | 52839066 | 52839150 | 52839066 | ID=Msa0555110-mRNA-1:exon:15351;Parent=Msa0555110-mRNA-1 |
| chr4_1 | exon | 52839269 | 52839398 | 52839269 | ID=Msa0555110-mRNA-1:exon:15352;Parent=Msa0555110-mRNA-1 |
| chr4_1 | exon | 52839514 | 52839668 | 52839514 | ID=Msa0555110-mRNA-1:exon:15353;Parent=Msa0555110-mRNA-1 |
| chr4_1 | exon | 52839763 | 52839883 | 52839763 | ID=Msa0555110-mRNA-1:exon:15354;Parent=Msa0555110-mRNA-1 |
| chr4_1 | exon | 52839975 | 52840142 | 52839975 | ID=Msa0555110-mRNA-1:exon:15355;Parent=Msa0555110-mRNA-1 |
| chr4_1 | exon | 52840222 | 52840293 | 52840222 | ID=Msa0555110-mRNA-1:exon:15356;Parent=Msa0555110-mRNA-1 |
| chr4_1 | exon | 52840422 | 52840622 | 52840422 | ID=Msa0555110-mRNA-1:exon:15357;Parent=Msa0555110-mRNA-1 |
| chr4_1 | CDS | 52832514 | 52832559 | 52832514 | ID=Msa0555110-mRNA-1:cds;Parent=Msa0555110-mRNA-1 |
| chr4_1 | CDS | 52832690 | 52832749 | 52832690 | ID=Msa0555110-mRNA-1:cds;Parent=Msa0555110-mRNA-1 |
| chr4_1 | CDS | 52833093 | 52833136 | 52833093 | ID=Msa0555110-mRNA-1:cds;Parent=Msa0555110-mRNA-1 |
| chr4_1 | CDS | 52834470 | 52834521 | 52834470 | ID=Msa0555110-mRNA-1:cds;Parent=Msa0555110-mRNA-1 |
| chr4_1 | CDS | 52834928 | 52835040 | 52834928 | ID=Msa0555110-mRNA-1:cds;Parent=Msa0555110-mRNA-1 |
| chr4_1 | CDS | 52835139 | 52835285 | 52835139 | ID=Msa0555110-mRNA-1:cds;Parent=Msa0555110-mRNA-1 |
| chr4_1 | CDS | 52835390 | 52835466 | 52835390 | ID=Msa0555110-mRNA-1:cds;Parent=Msa0555110-mRNA-1 |
| chr4_1 | CDS | 52836903 | 52836972 | 52836903 | ID=Msa0555110-mRNA-1:cds;Parent=Msa0555110-mRNA-1 |
| chr4_1 | CDS | 52837029 | 52837148 | 52837029 | ID=Msa0555110-mRNA-1:cds;Parent=Msa0555110-mRNA-1 |
| chr4_1 | CDS | 52837280 | 52837320 | 52837280 | ID=Msa0555110-mRNA-1:cds;Parent=Msa0555110-mRNA-1 |
| chr4_1 | CDS | 52837932 | 52838085 | 52837932 | ID=Msa0555110-mRNA-1:cds;Parent=Msa0555110-mRNA-1 |
| chr4_1 | CDS | 52838237 | 52838501 | 52838237 | ID=Msa0555110-mRNA-1:cds;Parent=Msa0555110-mRNA-1 |
| chr4_1 | CDS | 52838602 | 52838698 | 52838602 | ID=Msa0555110-mRNA-1:cds;Parent=Msa0555110-mRNA-1 |
| chr4_1 | CDS | 52838799 | 52838926 | 52838799 | ID=Msa0555110-mRNA-1:cds;Parent=Msa0555110-mRNA-1 |
| chr4_1 | CDS | 52839066 | 52839150 | 52839066 | ID=Msa0555110-mRNA-1:cds;Parent=Msa0555110-mRNA-1 |
| chr4_1 | CDS | 52839269 | 52839398 | 52839269 | ID=Msa0555110-mRNA-1:cds;Parent=Msa0555110-mRNA-1 |
| chr4_1 | CDS | 52839514 | 52839668 | 52839514 | ID=Msa0555110-mRNA-1:cds;Parent=Msa0555110-mRNA-1 |
| chr4_1 | CDS | 52839763 | 52839883 | 52839763 | ID=Msa0555110-mRNA-1:cds;Parent=Msa0555110-mRNA-1 |
| chr4_1 | CDS | 52839975 | 52840142 | 52839975 | ID=Msa0555110-mRNA-1:cds;Parent=Msa0555110-mRNA-1 |
| chr4_1 | CDS | 52840222 | 52840293 | 52840222 | ID=Msa0555110-mRNA-1:cds;Parent=Msa0555110-mRNA-1 |
| chr4_1 | CDS | 52840422 | 52840622 | 52840422 | ID=Msa0555110-mRNA-1:cds;Parent=Msa0555110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
