AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0556340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0556340 MtrunA17_Chr4g0045261 99.606 254 1 0 194 447 339 592 0.0 520
Msa0556340 MtrunA17_Chr4g0045261 86.170 188 10 3 1 175 1 185 3.24e-103 319
Msa0556340 MtrunA17_Chr8g0374701 83.399 253 41 1 194 446 330 581 2.66e-150 439
Msa0556340 MtrunA17_Chr8g0374701 45.408 196 66 11 1 175 1 176 6.28e-28 116
Msa0556340 MtrunA17_Chr5g0402551 81.423 253 46 1 194 446 336 587 8.65e-146 428
Msa0556340 MtrunA17_Chr5g0402551 46.809 188 81 7 1 175 1 182 1.02e-34 136
Msa0556340 MtrunA17_Chr7g0256001 72.222 252 69 1 194 444 343 594 3.79e-129 386
Msa0556340 MtrunA17_Chr7g0256001 55.882 136 48 5 50 175 56 189 2.57e-32 129
Msa0556340 MtrunA17_Chr7g0276111 62.698 252 90 3 194 444 346 594 5.41e-106 326
Msa0556340 MtrunA17_Chr7g0276111 47.887 142 57 4 51 175 51 192 1.32e-14 75.9
Msa0556340 MtrunA17_Chr3g0127571 63.306 248 87 3 194 441 340 583 4.08e-104 321
Msa0556340 MtrunA17_Chr3g0127571 55.556 63 21 1 120 175 124 186 2.02e-11 65.9
Msa0556340 MtrunA17_Chr5g0405421 43.952 248 134 3 194 438 299 544 1.11e-56 196
Msa0556340 MtrunA17_Chr1g0200601 35.484 248 142 7 195 434 229 466 3.46e-41 153
Msa0556340 MtrunA17_Chr1g0176751 33.603 247 154 6 193 435 321 561 2.62e-40 152
Msa0556340 MtrunA17_Chr5g0441691 28.862 246 166 4 193 434 265 505 1.14e-38 146
Msa0556340 MtrunA17_Chr1g0170281 32.520 246 154 6 195 435 317 555 2.63e-38 146
Msa0556340 MtrunA17_Chr5g0444171 30.328 244 161 4 195 434 291 529 9.36e-38 144
Msa0556340 MtrunA17_Chr8g0387671 31.967 244 157 4 195 434 265 503 1.48e-37 143
Msa0556340 MtrunA17_Chr5g0397101 30.864 243 160 3 195 434 266 503 8.47e-37 141
Msa0556340 MtrunA17_Chr3g0131181 30.078 256 165 6 195 442 228 477 2.04e-36 140
Msa0556340 MtrunA17_Chr1g0157131 29.918 244 162 4 195 434 273 511 2.62e-36 140
Msa0556340 MtrunA17_Chr8g0385341 29.688 256 166 6 195 442 229 478 3.15e-36 139
Msa0556340 MtrunA17_Chr0c02g0489761 28.279 244 166 4 195 434 277 515 7.46e-36 139
Msa0556340 MtrunA17_Chr4g0074811 28.689 244 165 4 195 434 290 528 1.98e-35 137
Msa0556340 MtrunA17_Chr5g0448721 30.350 257 163 6 195 442 295 544 3.96e-35 137
Msa0556340 MtrunA17_Chr3g0098951 29.200 250 162 4 195 434 283 527 1.28e-34 135
Msa0556340 MtrunA17_Chr1g0176421 33.621 232 140 6 195 422 360 581 1.28e-34 136
Msa0556340 MtrunA17_Chr7g0267751 31.707 246 156 6 195 435 334 572 2.03e-34 135
Msa0556340 MtrunA17_Chr4g0059951 28.571 245 165 4 195 434 272 511 1.99e-31 126
Msa0556340 MtrunA17_Chr7g0242561 28.980 245 164 4 195 434 255 494 5.80e-31 125
Msa0556340 MtrunA17_Chr1g0173541 27.126 247 170 4 193 434 249 490 1.00e-29 121
Msa0556340 MtrunA17_Chr7g0257751 27.347 245 168 4 195 434 257 496 2.53e-29 120
Msa0556340 MtrunA17_Chr4g0074791 27.869 244 156 6 195 434 295 522 6.64e-25 107
Msa0556340 MtrunA17_Chr4g0033371 25.410 244 173 4 195 434 271 509 3.51e-22 99.4
Msa0556340 MtrunA17_Chr5g0444191 49.231 65 30 1 195 259 107 168 1.83e-14 72.4
Msa0556340 MtrunA17_Chr7g0267771 49.180 61 31 0 195 255 287 347 1.76e-13 72.4
Msa0556340 MtrunA17_Chr5g0441771 30.097 103 51 2 220 321 18 100 4.69e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0556340 AT3G50530.1 81.369 263 46 1 183 442 336 598 1.21e-153 449
Msa0556340 AT3G50530.1 50.732 205 62 9 1 175 1 196 1.65e-42 159
Msa0556340 AT3G50530.2 81.369 263 46 1 183 442 367 629 2.14e-153 449
Msa0556340 AT3G50530.2 50.732 205 62 9 1 175 1 196 1.29e-42 159
Msa0556340 AT1G49580.1 75.100 249 61 1 194 441 352 600 2.11e-129 387
Msa0556340 AT1G49580.1 46.602 206 71 8 1 175 1 198 5.28e-35 137
Msa0556340 AT2G41140.1 71.713 251 71 0 194 444 325 575 8.48e-129 384
Msa0556340 AT2G41140.1 58.182 110 36 3 75 175 63 171 1.10e-27 116
Msa0556340 AT3G19100.1 74.016 254 65 1 194 446 346 599 1.35e-127 382
Msa0556340 AT3G19100.1 45.226 199 78 8 1 175 1 192 2.51e-34 135
Msa0556340 AT3G56760.1 69.323 251 77 0 194 444 326 576 2.47e-125 376
Msa0556340 AT3G56760.1 58.879 107 34 3 78 175 67 172 1.20e-27 116
Msa0556340 AT2G46700.2 61.694 248 92 2 194 441 164 408 1.39e-97 299
Msa0556340 AT2G46700.3 61.694 248 92 2 194 441 164 408 1.39e-97 299
Msa0556340 AT2G46700.1 61.694 248 92 2 194 441 345 589 5.21e-96 301
Msa0556340 AT2G46700.1 51.639 122 50 3 63 175 70 191 3.02e-15 78.6
Msa0556340 AT5G24430.1 56.855 248 103 3 194 441 345 588 4.09e-92 290
Msa0556340 AT5G24430.1 38.389 211 74 8 1 175 1 191 3.41e-15 78.2
Msa0556340 AT3G49370.1 56.855 248 103 3 194 441 344 587 1.16e-91 289
Msa0556340 AT2G17890.1 45.418 251 132 3 194 441 308 556 2.80e-60 206
Msa0556340 AT4G36070.1 43.028 251 138 3 194 441 271 519 7.60e-57 196
Msa0556340 AT4G36070.2 43.028 251 138 3 194 441 271 519 1.73e-56 196
Msa0556340 AT5G66210.1 44.314 255 135 4 194 443 262 514 2.39e-55 192
Msa0556340 AT5G66210.2 44.314 255 135 4 194 443 262 514 2.39e-55 192
Msa0556340 AT5G66210.5 46.635 208 108 2 194 398 262 469 1.55e-52 183
Msa0556340 AT5G66210.3 46.635 208 108 2 194 398 262 469 1.80e-52 184
Msa0556340 AT5G12180.1 32.031 256 165 5 193 444 270 520 9.52e-43 158
Msa0556340 AT5G04870.1 33.740 246 151 6 195 435 349 587 2.14e-41 155
Msa0556340 AT4G21940.2 32.806 253 160 5 195 444 301 546 2.71e-41 155
Msa0556340 AT4G21940.1 32.806 253 160 5 195 444 301 546 2.86e-41 154
Msa0556340 AT5G19360.1 31.707 246 159 5 193 434 265 505 9.41e-41 152
Msa0556340 AT4G09570.1 33.197 244 153 5 195 434 224 461 5.29e-40 150
Msa0556340 AT1G50700.1 31.148 244 159 4 195 434 272 510 9.93e-40 150
Msa0556340 AT3G20410.2 32.377 244 156 4 195 434 290 528 1.10e-39 150
Msa0556340 AT3G20410.1 32.377 244 156 4 195 434 290 528 1.10e-39 150
Msa0556340 AT1G35670.1 33.607 244 152 5 195 434 225 462 2.30e-39 148
Msa0556340 AT5G66210.6 47.059 153 80 1 194 345 262 414 1.01e-38 145
Msa0556340 AT5G66210.4 47.059 153 80 1 194 345 262 414 1.01e-38 145
Msa0556340 AT4G04720.2 31.325 249 163 4 195 440 279 522 1.14e-38 147
Msa0556340 AT4G04720.1 31.325 249 163 4 195 440 279 522 1.14e-38 147
Msa0556340 AT5G23580.1 33.198 247 149 6 195 434 221 458 1.70e-38 145
Msa0556340 AT3G10660.2 31.855 248 157 6 193 435 383 623 3.65e-38 147
Msa0556340 AT3G10660.1 31.855 248 157 6 193 435 383 623 3.65e-38 147
Msa0556340 AT4G35310.2 32.308 260 154 7 195 442 296 545 7.08e-38 145
Msa0556340 AT4G35310.1 32.308 260 154 7 195 442 296 545 7.08e-38 145
Msa0556340 AT1G76040.1 28.740 254 173 3 195 445 73 321 3.73e-37 139
Msa0556340 AT1G76040.4 28.740 254 173 3 195 445 73 321 3.73e-37 139
Msa0556340 AT2G38910.1 31.020 245 159 5 195 435 333 571 5.02e-37 143
Msa0556340 AT4G38230.1 30.588 255 166 6 195 444 79 327 5.03e-37 139
Msa0556340 AT1G50700.2 28.889 270 157 5 195 434 272 536 1.69e-36 141
Msa0556340 AT1G76040.2 28.740 254 173 3 195 445 311 559 3.12e-36 140
Msa0556340 AT4G23650.1 30.328 244 161 4 195 434 277 515 5.40e-36 139
Msa0556340 AT4G38230.4 30.588 255 166 6 195 444 223 471 5.48e-36 139
Msa0556340 AT4G38230.3 30.588 255 166 6 195 444 223 471 5.48e-36 139
Msa0556340 AT4G38230.2 30.588 255 166 6 195 444 253 501 6.62e-36 139
Msa0556340 AT2G17290.1 31.154 260 157 7 195 442 284 533 8.95e-36 139
Msa0556340 AT2G17290.2 31.154 260 157 7 195 442 284 533 8.95e-36 139
Msa0556340 AT4G21940.3 35.204 196 122 3 195 390 301 491 1.04e-35 138
Msa0556340 AT4G04740.4 30.041 243 162 3 195 434 268 505 1.22e-34 135
Msa0556340 AT4G04740.6 30.041 243 162 3 195 434 268 505 1.22e-34 135
Msa0556340 AT4G04740.5 30.041 243 162 3 195 434 268 505 1.22e-34 135
Msa0556340 AT4G04740.3 30.041 243 162 3 195 434 268 505 1.22e-34 135
Msa0556340 AT4G04740.1 30.041 243 162 3 195 434 268 505 1.22e-34 135
Msa0556340 AT4G04740.7 30.041 243 162 3 195 434 268 505 1.22e-34 135
Msa0556340 AT1G50700.3 32.995 197 126 3 195 390 272 463 7.88e-34 132
Msa0556340 AT1G61950.1 29.020 255 172 4 195 445 298 547 3.10e-33 132
Msa0556340 AT4G04740.2 30.638 235 153 4 195 426 268 495 9.12e-32 127
Msa0556340 AT2G41860.1 29.796 245 162 4 195 434 253 492 1.13e-31 127
Msa0556340 AT2G41860.2 29.796 245 162 4 195 434 253 492 1.22e-31 127
Msa0556340 AT3G51850.1 27.755 245 167 5 195 434 253 492 1.73e-31 127
Msa0556340 AT3G51850.2 29.665 209 141 3 195 402 253 456 6.85e-31 124
Msa0556340 AT1G18890.1 29.388 245 163 4 195 434 262 501 1.17e-30 124
Msa0556340 AT1G74740.1 31.020 245 159 4 195 434 258 497 1.79e-30 124
Msa0556340 AT3G57530.1 27.755 245 166 5 195 434 262 500 6.83e-30 122
Msa0556340 AT5G19450.2 27.755 245 168 3 195 434 256 496 7.52e-30 122
Msa0556340 AT5G19450.1 27.755 245 168 3 195 434 256 496 7.52e-30 122
Msa0556340 AT1G76040.3 29.897 194 131 2 195 388 311 499 3.29e-29 120
Msa0556340 AT2G35890.2 30.526 190 126 4 195 379 331 519 1.24e-28 118
Msa0556340 AT2G35890.1 30.526 190 126 4 195 379 331 519 1.24e-28 118
Msa0556340 AT5G12480.2 27.236 246 168 4 195 434 164 404 2.40e-28 116
Msa0556340 AT5G12480.1 27.236 246 168 4 195 434 258 498 4.65e-28 117
Msa0556340 AT4G04695.1 26.210 248 175 3 195 439 231 473 6.94e-28 115
Msa0556340 AT4G04710.1 27.200 250 166 5 195 434 239 482 1.08e-26 112
Msa0556340 AT4G04710.3 27.803 223 152 4 215 434 239 455 2.47e-26 111
Msa0556340 AT4G04700.1 26.613 248 174 4 195 439 231 473 2.85e-26 111
Msa0556340 AT4G04710.2 27.803 223 152 4 215 434 253 469 3.13e-26 111
Msa0556340 AT4G04710.4 27.381 252 165 6 195 434 239 484 3.22e-26 111
Msa0556340 AT2G31500.1 25.403 248 172 4 195 434 265 507 2.41e-25 109
Msa0556340 AT3G51850.3 29.605 152 105 2 195 345 253 403 1.84e-22 99.4
Msa0556340 AT3G57530.2 32.836 134 89 1 195 327 262 395 6.93e-22 97.8
Msa0556340 AT1G12580.1 41.538 65 38 0 195 259 243 307 8.29e-11 64.3

Find 147 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGCGATGACGTCATCTTTC+CGG 0.189511 4_1:-54489822 None:intergenic
GAGGGAGCAATTTGCGTTAT+TGG 0.216958 4_1:+54493623 Msa0556340:CDS
ATAATGAAACTATACTTTAA+TGG 0.217109 4_1:-54494511 None:intergenic
TTCTGCTGCTAAATTCAAAA+AGG 0.220385 4_1:+54490173 Msa0556340:CDS
CGTCTCCGGCGAAGCATATA+AGG 0.221762 4_1:+54489989 Msa0556340:CDS
AGAGGAGGGTGCCGGGGATT+TGG 0.252703 4_1:+54490068 Msa0556340:CDS
TGTCAAACGCCTACTAAATA+AGG 0.254423 4_1:+54493223 Msa0556340:CDS
ACAGAATCAACCTTTGCTTT+AGG 0.277305 4_1:-54490234 None:intergenic
TATGTGGCAGTCGCCCATTT+TGG 0.283793 4_1:+54493102 Msa0556340:intron
GGGGATTTGGACAAGAGATT+TGG 0.286938 4_1:+54490081 Msa0556340:CDS
TAGAATTAGCTTTGCCTTGA+TGG 0.294413 4_1:+54494616 Msa0556340:three_prime_UTR
TCCATTTCTCTAAGGGCATA+TGG 0.301803 4_1:-54489748 None:intergenic
TAATGAAACTATACTTTAAT+GGG 0.317413 4_1:-54494510 None:intergenic
GATTCCGTTCGAGCCCAAAA+TGG 0.318603 4_1:-54493116 None:intergenic
GACGTCATCTTTCCGGTTAC+CGG 0.327161 4_1:-54489815 None:intergenic
CTTCTGTACTGTAAGATCTA+TGG 0.330336 4_1:-54493040 None:intergenic
TCTCTAAGGGCATATGGGTT+TGG 0.338634 4_1:-54489742 None:intergenic
ACCTCCTTGGCGTCGAGTTC+CGG 0.351186 4_1:-54489942 None:intergenic
GGTCAGTTTCCATTTCTCTA+AGG 0.366162 4_1:-54489756 None:intergenic
TTAGTAGTAAGTTGGAGGTT+GGG 0.372405 4_1:+54490118 Msa0556340:intron
CTTGCGTAAGGCTGCCTTAA+GGG 0.372410 4_1:+54493456 Msa0556340:CDS
CCCATATGCCCTTAGAGAAA+TGG 0.372522 4_1:+54489747 Msa0556340:CDS
GATGGGAAGCTAAGCTTTCT+CGG 0.378832 4_1:+54494303 Msa0556340:CDS
GGGTCTGTGGGATTTGTGTT+GGG 0.379398 4_1:-54489777 None:intergenic
TAGTAGTAAGTTGGAGGTTG+GGG 0.384497 4_1:+54490119 Msa0556340:intron
TAAGATCTATGGAGAACTTC+AGG 0.387822 4_1:-54493029 None:intergenic
TCATGAAGAACAACATGAAC+AGG 0.388496 4_1:-54494264 None:intergenic
AAGACGGAGAGGAGGGTGCC+GGG 0.390289 4_1:+54490061 Msa0556340:CDS
TTTAGTAGTAAGTTGGAGGT+TGG 0.392622 4_1:+54490117 Msa0556340:intron
GGGATTTGGACAAGAGATTT+GGG 0.394158 4_1:+54490082 Msa0556340:CDS
GAAGGAAGCCGCGGCGATAC+CGG 0.397131 4_1:+54490038 Msa0556340:CDS
TTACATCATAACTGAACCTT+TGG 0.397511 4_1:-54494366 None:intergenic
GGGGTCTGTGGGATTTGTGT+TGG 0.401303 4_1:-54489778 None:intergenic
AGGGACTTTGTGGGGTCTGT+GGG 0.401388 4_1:-54489789 None:intergenic
GCACCCTCCTCTCCGTCTTC+CGG 0.404544 4_1:-54490057 None:intergenic
TTCATGTTGTTCTTCATGAC+TGG 0.408369 4_1:+54494268 Msa0556340:CDS
CGCCGGAGACGGCGGTGGAA+AGG 0.410497 4_1:-54489977 None:intergenic
GAAGACGGAGAGGAGGGTGC+CGG 0.412876 4_1:+54490060 Msa0556340:CDS
ACCCTTTCCACCGCCGTCTC+CGG 0.413033 4_1:+54489975 Msa0556340:CDS
CCATTTCTCTAAGGGCATAT+GGG 0.425029 4_1:-54489747 None:intergenic
TTCAGAAACCGAGCTGGACT+TGG 0.426256 4_1:-54489877 None:intergenic
TCCGAGGGTCCTTATTTAGT+AGG 0.427755 4_1:-54493232 None:intergenic
TTGGGGAAGAAGTGGGTAGG+GGG 0.428867 4_1:+54490136 Msa0556340:CDS
ATCTTTCCGGTTACCGGTGT+AGG 0.429908 4_1:-54489809 None:intergenic
TTCTGAAGATAAGGATGGCC+AGG 0.433199 4_1:-54493189 None:intergenic
TTACCGGTGTAGGGACTTTG+TGG 0.434674 4_1:-54489799 None:intergenic
ACGGCGGTGGAAAGGGTCGC+CGG 0.439602 4_1:-54489969 None:intergenic
TACCGGTGTAGGGACTTTGT+GGG 0.439768 4_1:-54489798 None:intergenic
GAAAGGCTTAATGACATTGT+TGG 0.439898 4_1:+54492987 Msa0556340:CDS
GCCGGAGACGGCGGTGGAAA+GGG 0.441075 4_1:-54489976 None:intergenic
GTTGGGGAAGAAGTGGGTAG+GGG 0.441303 4_1:+54490135 Msa0556340:CDS
AGAATTAGCTTTGCCTTGAT+GGG 0.441371 4_1:+54494617 Msa0556340:three_prime_UTR
TAGGGACTTTGTGGGGTCTG+TGG 0.447521 4_1:-54489790 None:intergenic
TTCATCAGCAGTTAAAGTCT+TGG 0.449560 4_1:-54493589 None:intergenic
ACTGAACCTTTGGAAGGCTT+CGG 0.452114 4_1:-54494356 None:intergenic
ATTCTTAGAATCTAATTATG+TGG 0.452584 4_1:+54494763 Msa0556340:three_prime_UTR
AACTCGAAGCTCTTGATCGT+TGG 0.452769 4_1:+54493991 Msa0556340:CDS
AGTGATACGAGACTCTTTCA+TGG 0.454073 4_1:-54493796 None:intergenic
AAAGTCCCTACACCGGTAAC+CGG 0.456028 4_1:+54489803 Msa0556340:CDS
ACTCGAAGCTCTTGATCGTT+GGG 0.457978 4_1:+54493992 Msa0556340:CDS
TGAGTTCATTACAATATAGA+AGG 0.458011 4_1:+54493925 Msa0556340:CDS
CCTTGCGTAAGGCTGCCTTA+AGG 0.462823 4_1:+54493455 Msa0556340:CDS
GTCAGTTTCCATTTCTCTAA+GGG 0.465390 4_1:-54489755 None:intergenic
AACCAAAATACTCACCCTTA+AGG 0.474068 4_1:-54493470 None:intergenic
ATGGGAAGCTAAGCTTTCTC+GGG 0.477366 4_1:+54494304 Msa0556340:CDS
TTGTGCTTGCAGGTCATCCT+TGG 0.478555 4_1:+54493353 Msa0556340:intron
ATTCCGTTCGAGCCCAAAAT+GGG 0.479899 4_1:-54493115 None:intergenic
GCAAATGCATGTGGATATGC+TGG 0.480346 4_1:+54494390 Msa0556340:three_prime_UTR
GTTGGAGGTTGGGGAAGAAG+TGG 0.482998 4_1:+54490128 Msa0556340:CDS
TGCTTCGCCGGAGACGGCGG+TGG 0.488799 4_1:-54489982 None:intergenic
CTTATATGCTTCGCCGGAGA+CGG 0.489808 4_1:-54489988 None:intergenic
GCATATGGGTTTGGTTTCTG+TGG 0.489837 4_1:-54489733 None:intergenic
TTGGAGGTTGGGGAAGAAGT+GGG 0.490434 4_1:+54490129 Msa0556340:CDS
GGTTGGGGAAGAAGTGGGTA+GGG 0.497003 4_1:+54490134 Msa0556340:CDS
TTCCGGCTTCTTTCACTCGC+CGG 0.498690 4_1:-54489925 None:intergenic
GGCTAGGAGACAAGGGAAGA+AGG 0.501528 4_1:+54490020 Msa0556340:CDS
GAAGCGAATATCTGCTGCTC+AGG 0.504848 4_1:+54493253 Msa0556340:CDS
CTTTCACTCGCCGGAGTCGA+CGG 0.508785 4_1:-54489916 None:intergenic
TCTTTCCGGTTACCGGTGTA+GGG 0.510977 4_1:-54489808 None:intergenic
CTTGCGATGGCTTCAGATGC+CGG 0.512408 4_1:-54494482 None:intergenic
GACTGGATACGCCACACAGA+TGG 0.512586 4_1:+54494285 Msa0556340:CDS
GTCTCCGGCGAAGCATATAA+GGG 0.519041 4_1:+54489990 Msa0556340:CDS
TAAATTATTCCCACCCATCA+AGG 0.524406 4_1:-54494630 None:intergenic
ATCATAACTGAACCTTTGGA+AGG 0.527959 4_1:-54494362 None:intergenic
TTAGCTTTGCCTTGATGGGT+GGG 0.528319 4_1:+54494621 Msa0556340:three_prime_UTR
CAGGCTTTGACGAAGGTCCC+TGG 0.529064 4_1:+54493171 Msa0556340:CDS
GAAGCATATAAGGGCTGTGT+TGG 0.530113 4_1:+54489999 Msa0556340:CDS
ATATAAGGGCTGTGTTGGCT+AGG 0.532349 4_1:+54490004 Msa0556340:CDS
CAGGGACCTTCGTCAAAGCC+TGG 0.533051 4_1:-54493170 None:intergenic
GGGTTTGTCAAATTATTGCA+TGG 0.536855 4_1:+54494324 Msa0556340:CDS
ATTAGCTTTGCCTTGATGGG+TGG 0.538845 4_1:+54494620 Msa0556340:three_prime_UTR
TTCATTACAATATAGAAGGA+TGG 0.539395 4_1:+54493929 Msa0556340:CDS
CGGAAAGATGACGTCATCGC+CGG 0.542842 4_1:+54489823 Msa0556340:CDS
TTGAATATTAAAATATCAAG+CGG 0.544868 4_1:-54493403 None:intergenic
TGTCATGTAATACAGATGAA+AGG 0.549491 4_1:+54492970 Msa0556340:intron
GCCTACTAAATAAGGACCCT+CGG 0.555221 4_1:+54493231 Msa0556340:CDS
GACTTCTTCAGAAACCGAGC+TGG 0.555421 4_1:-54489883 None:intergenic
AGACGGAGAGGAGGGTGCCG+GGG 0.558532 4_1:+54490062 Msa0556340:CDS
ACAGCCCTTATATGCTTCGC+CGG 0.561892 4_1:-54489994 None:intergenic
GCTGTGTTGGCTAGGAGACA+AGG 0.562344 4_1:+54490012 Msa0556340:CDS
CTGATGAACTCTATTATCTG+AGG 0.562591 4_1:+54493604 Msa0556340:CDS
CTCCGGCGAGTGAAAGAAGC+CGG 0.564735 4_1:+54489923 Msa0556340:CDS
TTTGCTTCTGAAGATAAGGA+TGG 0.564854 4_1:-54493194 None:intergenic
GCCGCGGCGATACCGGAAGA+CGG 0.568127 4_1:+54490045 Msa0556340:CDS
GACCTTGTTAATGTTCTCCA+AGG 0.568400 4_1:-54493670 None:intergenic
AAATCTCTTGTCCAAATCCC+CGG 0.568972 4_1:-54490079 None:intergenic
GAAGCCGGAACTCGACGCCA+AGG 0.573616 4_1:+54489938 Msa0556340:CDS
AGGTTGGGGAAGAAGTGGGT+AGG 0.573863 4_1:+54490133 Msa0556340:CDS
TTTACAGTCCAAGTCCAGCT+CGG 0.574544 4_1:+54489869 Msa0556340:intron
TCCGTCCACTCCGTCGACTC+CGG 0.574877 4_1:+54489906 Msa0556340:CDS
TGCGATCGTTCAACAATGGG+GGG 0.576843 4_1:+54489697 None:intergenic
TTAATGGGCTATGCTTGCGA+TGG 0.581192 4_1:-54494495 None:intergenic
GCCGGAGTCGACGGAGTGGA+CGG 0.586039 4_1:-54489907 None:intergenic
GCTGATCCAGGCTTTGACGA+AGG 0.586638 4_1:+54493164 Msa0556340:CDS
ACAACATGAACAGGGATCGA+TGG 0.588231 4_1:-54494255 None:intergenic
ACCGGTGTAGGGACTTTGTG+GGG 0.592128 4_1:-54489797 None:intergenic
CAACTGATGATTTGTCTCAC+CGG 0.592847 4_1:+54494463 Msa0556340:three_prime_UTR
ACTGGATACGCCACACAGAT+GGG 0.593079 4_1:+54494286 Msa0556340:CDS
GAGATCGTCATCCTTGCGTA+AGG 0.594749 4_1:+54493444 Msa0556340:CDS
ATATGCTTCGCCGGAGACGG+CGG 0.595691 4_1:-54489985 None:intergenic
TCATTGTAATTACGTATCCA+AGG 0.596858 4_1:-54493370 None:intergenic
ACAAGGGAAGAAGGAAGCCG+CGG 0.599647 4_1:+54490029 Msa0556340:CDS
GAAAGTGATTCCTAAAGCAA+AGG 0.601196 4_1:+54490224 Msa0556340:CDS
ACGATTCATATCTTAAGCCA+CGG 0.603113 4_1:-54494588 None:intergenic
GATACCGGAAGACGGAGAGG+AGG 0.604596 4_1:+54490053 Msa0556340:CDS
TGATGAACTCTATTATCTGA+GGG 0.605388 4_1:+54493605 Msa0556340:CDS
TGTTGGAAGTGCATATTATG+TGG 0.607885 4_1:+54493004 Msa0556340:CDS
AATGTTAAATTAGTACACTC+AGG 0.612333 4_1:-54494743 None:intergenic
GGCGATACCGGAAGACGGAG+AGG 0.613978 4_1:+54490050 Msa0556340:CDS
CAGCAGATATTCGCTTCCGA+GGG 0.614004 4_1:-54493247 None:intergenic
ATCTAGCCGAAGCCTTCCAA+AGG 0.616362 4_1:+54494350 Msa0556340:CDS
TCTGAAGATAAGGATGGCCA+GGG 0.621620 4_1:-54493188 None:intergenic
ATACCGGAAGACGGAGAGGA+GGG 0.626151 4_1:+54490054 Msa0556340:CDS
GCAGCAGATATTCGCTTCCG+AGG 0.626554 4_1:-54493248 None:intergenic
TGGCTTAAGATATGAATCGT+AGG 0.632724 4_1:+54494591 Msa0556340:three_prime_UTR
TGAGTTTAAGGGTCAACAAG+TGG 0.635747 4_1:+54490197 Msa0556340:CDS
CTGTGTTGGCTAGGAGACAA+GGG 0.641843 4_1:+54490013 Msa0556340:CDS
CATGAAGAACAACATGAACA+GGG 0.642426 4_1:-54494263 None:intergenic
TGATGTAAAGCAAATGCATG+TGG 0.648125 4_1:+54494381 Msa0556340:exon
CCTTAAGGCAGCCTTACGCA+AGG 0.649837 4_1:-54493455 None:intergenic
ATCCTTGGAGAACATTAACA+AGG 0.679000 4_1:+54493668 Msa0556340:CDS
ACTCGCCGGAGTCGACGGAG+TGG 0.681048 4_1:-54489911 None:intergenic
ACCCCACAAAGTCCCTACAC+CGG 0.683745 4_1:+54489796 Msa0556340:CDS
AGCTTAGCTTCCCATCTGTG+TGG 0.691574 4_1:-54494296 None:intergenic
GCCGGAACTCGACGCCAAGG+AGG 0.711160 4_1:+54489941 Msa0556340:CDS
TAAAATAGTCTACAGAACCG+TGG 0.711771 4_1:+54494571 Msa0556340:three_prime_UTR
TCCGTCTTCCGGTATCGCCG+CGG 0.712014 4_1:-54490046 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAATGAATATGTAATTA+CGG - chr4_1:54490722-54490741 None:intergenic 10.0%
!! TTAAATTGAATTATTGAATA+TGG + chr4_1:54492734-54492753 Msa0556340:intron 10.0%
!! ATTATGTATAATAATAACTA+TGG - chr4_1:54494115-54494134 None:intergenic 10.0%
!! TTATAAAGTATAAACAAAAT+AGG - chr4_1:54494150-54494169 None:intergenic 10.0%
!!! TGTTTATTATGACTATATTT+TGG + chr4_1:54490683-54490702 Msa0556340:intron 15.0%
!! TTAAATATGATTAACTATAG+CGG - chr4_1:54491892-54491911 None:intergenic 15.0%
!!! TACATTTGATTTGTTATAAA+AGG + chr4_1:54492219-54492238 Msa0556340:intron 15.0%
!!! ACATTTGATTTGTTATAAAA+GGG + chr4_1:54492220-54492239 Msa0556340:intron 15.0%
!! TTATGTTGGAAAATAAAAAA+GGG - chr4_1:54492370-54492389 None:intergenic 15.0%
!! ATTATGTTGGAAAATAAAAA+AGG - chr4_1:54492371-54492390 None:intergenic 15.0%
!! TTGAATATTAAAATATCAAG+CGG - chr4_1:54493406-54493425 None:intergenic 15.0%
!! ATACAATTAAAAACCAAAAA+CGG - chr4_1:54493533-54493552 None:intergenic 15.0%
!!! AAAACATTTTTGAAGAAATA+TGG - chr4_1:54494216-54494235 None:intergenic 15.0%
!!! TTTCTTCAAAAATGTTTTAT+AGG + chr4_1:54494218-54494237 Msa0556340:intron 15.0%
!! TAATGAAACTATACTTTAAT+GGG - chr4_1:54494513-54494532 None:intergenic 15.0%
!! ATAATGAAACTATACTTTAA+TGG - chr4_1:54494514-54494533 None:intergenic 15.0%
!!! TTCCTTTTCAATTTTGATTA+TGG + chr4_1:54490908-54490927 Msa0556340:intron 20.0%
!! TACCATAATCAAAATTGAAA+AGG - chr4_1:54490913-54490932 None:intergenic 20.0%
!! GTATATTACTCAATGAAAAA+AGG - chr4_1:54491175-54491194 None:intergenic 20.0%
!! ATACCATATTCATAATTAAC+TGG + chr4_1:54491440-54491459 Msa0556340:intron 20.0%
!! TATCCAGTTAATTATGAATA+TGG - chr4_1:54491446-54491465 None:intergenic 20.0%
!!! CATTTGATTTGTTATAAAAG+GGG + chr4_1:54492221-54492240 Msa0556340:intron 20.0%
!!! ATTTTTTATAGTCTGTACAA+TGG - chr4_1:54492346-54492365 None:intergenic 20.0%
!! ATATTGACCAATATATCATA+AGG - chr4_1:54492460-54492479 None:intergenic 20.0%
!!! TATCAAGAATTAATTTTTGC+CGG + chr4_1:54492666-54492685 Msa0556340:intron 20.0%
!! ATAGCATATATTCTATTATG+TGG + chr4_1:54493086-54493105 Msa0556340:intron 20.0%
!! AATATAAACGAGATTCTAAT+AGG + chr4_1:54493303-54493322 Msa0556340:intron 20.0%
!! TAAATTTATACTCATTTCGT+TGG + chr4_1:54493556-54493575 Msa0556340:intron 20.0%
!!! TTTTCTCATTCATATTTTTC+TGG + chr4_1:54493744-54493763 Msa0556340:intron 20.0%
!!! TTTCTCATTCATATTTTTCT+GGG + chr4_1:54493745-54493764 Msa0556340:intron 20.0%
!! TATTAAATCATCAGTATACA+TGG + chr4_1:54494180-54494199 Msa0556340:intron 20.0%
!!! AAAAATGTTTTATAGGAACT+TGG + chr4_1:54494225-54494244 Msa0556340:intron 20.0%
!! ATTCTTAGAATCTAATTATG+TGG + chr4_1:54494763-54494782 Msa0556340:three_prime_UTR 20.0%
!!! AAAGGATTTTAGTAGTAAGT+TGG + chr4_1:54490110-54490129 Msa0556340:intron 25.0%
!!! ATGCTTTGGAATATTGTTAT+AGG + chr4_1:54490343-54490362 Msa0556340:intron 25.0%
!!! CTTGGAATTCGTTTTAATTT+TGG + chr4_1:54490366-54490385 Msa0556340:intron 25.0%
! TATTTGCTTGATAAACTTTG+AGG + chr4_1:54490401-54490420 Msa0556340:intron 25.0%
!!! TTGATAAACTTTGAGGTTTT+AGG + chr4_1:54490408-54490427 Msa0556340:intron 25.0%
!!! GTGTTAGTTTATGTGTTTTT+TGG + chr4_1:54490512-54490531 Msa0556340:intron 25.0%
! TTGATGTTGATCAAACTTAT+TGG + chr4_1:54490600-54490619 Msa0556340:intron 25.0%
!! TTACAATGTAGACATTTTCT+TGG - chr4_1:54490864-54490883 None:intergenic 25.0%
! AGAAAATGTCTACATTGTAA+TGG + chr4_1:54490864-54490883 Msa0556340:intron 25.0%
! TAACTAAATGATTCAGCTAT+TGG + chr4_1:54491252-54491271 Msa0556340:intron 25.0%
! TTAAACCTAATAAATCACCT+TGG - chr4_1:54491369-54491388 None:intergenic 25.0%
!! ACATTGTTTGATTTAGAAAC+TGG + chr4_1:54492263-54492282 Msa0556340:intron 25.0%
! CAAAACTTCAAGAATTATGT+TGG - chr4_1:54492384-54492403 None:intergenic 25.0%
! AACACATCCTTATGATATAT+TGG + chr4_1:54492450-54492469 Msa0556340:intron 25.0%
!! ATACAAACAACAAGTTTTTC+CGG - chr4_1:54492688-54492707 None:intergenic 25.0%
!!! GAATTTTTTGTACACTACAA+AGG + chr4_1:54492813-54492832 Msa0556340:intron 25.0%
! AGTTAAAAGCTATAGACTTT+GGG + chr4_1:54492848-54492867 Msa0556340:intron 25.0%
! TAGAATCTCGTTTATATTAG+AGG - chr4_1:54493301-54493320 None:intergenic 25.0%
!!! AAACTTCTTACAAGTTGATA+TGG - chr4_1:54493701-54493720 None:intergenic 25.0%
! AATATGAATGAGAAAACTTG+TGG - chr4_1:54493740-54493759 None:intergenic 25.0%
! GAATCTACAATAATAGAAGA+AGG - chr4_1:54493846-54493865 None:intergenic 25.0%
! AACAACTAGTCAAACTAATT+CGG - chr4_1:54493868-54493887 None:intergenic 25.0%
! TGAGTTCATTACAATATAGA+AGG + chr4_1:54493925-54493944 Msa0556340:CDS 25.0%
! TTCATTACAATATAGAAGGA+TGG + chr4_1:54493929-54493948 Msa0556340:CDS 25.0%
!!! TATGAACTTTTTGAGAAAGA+TGG + chr4_1:54494035-54494054 Msa0556340:CDS 25.0%
! AAACAAAATAGGTGTAAATG+TGG - chr4_1:54494139-54494158 None:intergenic 25.0%
!! ATGCAAAATGATTCTTTTGA+AGG + chr4_1:54494537-54494556 Msa0556340:three_prime_UTR 25.0%
! AATGTTAAATTAGTACACTC+AGG - chr4_1:54494746-54494765 None:intergenic 25.0%
!!! AAAAAACGGAGACTTTTTTC+CGG - chr4_1:54489845-54489864 None:intergenic 30.0%
TTCTGCTGCTAAATTCAAAA+AGG + chr4_1:54490173-54490192 Msa0556340:CDS 30.0%
TCTGCTGCTAAATTCAAAAA+GGG + chr4_1:54490174-54490193 Msa0556340:CDS 30.0%
ATTCAAAAAGGGTGAGTTTA+AGG + chr4_1:54490185-54490204 Msa0556340:CDS 30.0%
TTCAAAAAGGGTGAGTTTAA+GGG + chr4_1:54490186-54490205 Msa0556340:CDS 30.0%
CAGCTAGAAATAATCATAGA+AGG - chr4_1:54490267-54490286 None:intergenic 30.0%
TGATACTTTGATGAATCACT+TGG + chr4_1:54490319-54490338 Msa0556340:intron 30.0%
TTGGAATATTGTTATAGGCT+TGG + chr4_1:54490348-54490367 Msa0556340:intron 30.0%
!! TTTCTGGTTACTTGTGTTTA+AGG + chr4_1:54490435-54490454 Msa0556340:intron 30.0%
TTGTTTGGAAATGTTTCTCT+AGG + chr4_1:54490477-54490496 Msa0556340:intron 30.0%
! ACTTGAGGAATAAAGAGTAT+AGG + chr4_1:54490629-54490648 Msa0556340:intron 30.0%
TATAGGAATTGAATTTGCCT+TGG + chr4_1:54490646-54490665 Msa0556340:intron 30.0%
ATTGAATTTGCCTTGGAATT+TGG + chr4_1:54490653-54490672 Msa0556340:intron 30.0%
!! AAAATATTGCGAGCTTTGAA+CGG + chr4_1:54490799-54490818 Msa0556340:intron 30.0%
CGTACATACATTTCTTAACT+AGG - chr4_1:54490953-54490972 None:intergenic 30.0%
GATTTCATCAATTCAACTAG+TGG + chr4_1:54491072-54491091 Msa0556340:intron 30.0%
TCTTAGACATGATACTATCA+AGG + chr4_1:54491509-54491528 Msa0556340:intron 30.0%
TGAAGAAGCAATAAATCATG+TGG - chr4_1:54491711-54491730 None:intergenic 30.0%
ATGATTTATTGCTTCTTCAG+AGG + chr4_1:54491712-54491731 Msa0556340:intron 30.0%
AGATCTGATATAAGCCTATA+AGG + chr4_1:54491995-54492014 Msa0556340:intron 30.0%
ACATATGGACAACTGTTAAA+AGG - chr4_1:54492186-54492205 None:intergenic 30.0%
TATAAGTAAACACGCACATA+TGG - chr4_1:54492201-54492220 None:intergenic 30.0%
! TTTGATTTAGAAACTGGTCA+TGG + chr4_1:54492269-54492288 Msa0556340:intron 30.0%
TTGATTTAGAAACTGGTCAT+GGG + chr4_1:54492270-54492289 Msa0556340:intron 30.0%
GAACTAAATGAAACTGCATA+AGG - chr4_1:54492486-54492505 None:intergenic 30.0%
! ATGCAGTTTCATTTAGTTCA+CGG + chr4_1:54492487-54492506 Msa0556340:intron 30.0%
GAGTTAAAAGCTATAGACTT+TGG + chr4_1:54492847-54492866 Msa0556340:intron 30.0%
TGTCATGTAATACAGATGAA+AGG + chr4_1:54492970-54492989 Msa0556340:intron 30.0%
!! ATCTTTTGCTTCTGAAGATA+AGG - chr4_1:54493201-54493220 None:intergenic 30.0%
TCATTGTAATTACGTATCCA+AGG - chr4_1:54493373-54493392 None:intergenic 30.0%
! GTGATGAAAATTACCGTTTT+TGG + chr4_1:54493517-54493536 Msa0556340:intron 30.0%
TGATGAACTCTATTATCTGA+GGG + chr4_1:54493605-54493624 Msa0556340:CDS 30.0%
TTATTGGAACCAAGCAAAAA+CGG + chr4_1:54493639-54493658 Msa0556340:CDS 30.0%
!!! TATCACTGATTTTCTTTCCT+CGG + chr4_1:54493812-54493831 Msa0556340:CDS 30.0%
TGAACTCAGCTGTAATAAAA+GGG - chr4_1:54493913-54493932 None:intergenic 30.0%
ATGAACTCAGCTGTAATAAA+AGG - chr4_1:54493914-54493933 None:intergenic 30.0%
!! GGATTTTGAAGAATTTTGTG+CGG + chr4_1:54493950-54493969 Msa0556340:CDS 30.0%
!! TTTTTGAGAAAGATGGAAAC+AGG + chr4_1:54494042-54494061 Msa0556340:CDS 30.0%
!! TTTTGAGAAAGATGGAAACA+GGG + chr4_1:54494043-54494062 Msa0556340:CDS 30.0%
TTACATCATAACTGAACCTT+TGG - chr4_1:54494369-54494388 None:intergenic 30.0%
GTCAGTTTCCATTTCTCTAA+GGG - chr4_1:54489758-54489777 None:intergenic 35.0%
GGACTGTAAAACGGAAAAAA+CGG - chr4_1:54489859-54489878 None:intergenic 35.0%
!! CAAGAGATTTGGGTTTTCAA+AGG + chr4_1:54490092-54490111 Msa0556340:intron 35.0%
!! GGATTTTAGTAGTAAGTTGG+AGG + chr4_1:54490113-54490132 Msa0556340:intron 35.0%
! TTTAGTAGTAAGTTGGAGGT+TGG + chr4_1:54490117-54490136 Msa0556340:intron 35.0%
! TTAGTAGTAAGTTGGAGGTT+GGG + chr4_1:54490118-54490137 Msa0556340:intron 35.0%
GAAAGTGATTCCTAAAGCAA+AGG + chr4_1:54490224-54490243 Msa0556340:CDS 35.0%
ACAGAATCAACCTTTGCTTT+AGG - chr4_1:54490237-54490256 None:intergenic 35.0%
ATGAATCACTTGGTATGCTT+TGG + chr4_1:54490329-54490348 Msa0556340:intron 35.0%
!!! TGAGGTTTTAGGTTGTTTTC+TGG + chr4_1:54490419-54490438 Msa0556340:intron 35.0%
TGTTTAAGGATATGCTGTTG+AGG + chr4_1:54490449-54490468 Msa0556340:intron 35.0%
ACTTATTGGAGTTGAACTTG+AGG + chr4_1:54490614-54490633 Msa0556340:intron 35.0%
ACAATATCGTCCAAATTCCA+AGG - chr4_1:54490666-54490685 None:intergenic 35.0%
AATTGAAGATGTGAGAAGAG+AGG + chr4_1:54490774-54490793 Msa0556340:intron 35.0%
!! AAATATTGCGAGCTTTGAAC+GGG + chr4_1:54490800-54490819 Msa0556340:intron 35.0%
!! AAAAGACTTGTTAGCTGAAG+TGG - chr4_1:54490996-54491015 None:intergenic 35.0%
! CATCAATTCAACTAGTGGAT+TGG + chr4_1:54491077-54491096 Msa0556340:intron 35.0%
!! ACCTTGGTGTCACTATATAT+GGG - chr4_1:54491353-54491372 None:intergenic 35.0%
TGACACCAAGGTGATTTATT+AGG + chr4_1:54491361-54491380 Msa0556340:intron 35.0%
TAAATCATGTGGCTAGTAAG+TGG - chr4_1:54491700-54491719 None:intergenic 35.0%
ATTTATTGCTTCTTCAGAGG+AGG + chr4_1:54491715-54491734 Msa0556340:intron 35.0%
TTTATTGCTTCTTCAGAGGA+GGG + chr4_1:54491716-54491735 Msa0556340:intron 35.0%
! TGTTGCATTTTGTCATCTTC+AGG + chr4_1:54491789-54491808 Msa0556340:intron 35.0%
! GTTGCATTTTGTCATCTTCA+GGG + chr4_1:54491790-54491809 Msa0556340:intron 35.0%
!! GCAAAGGCTTTTTGTTTGAA+GGG - chr4_1:54491933-54491952 None:intergenic 35.0%
GAAAAGATGAGTGACCTTAT+AGG - chr4_1:54492012-54492031 None:intergenic 35.0%
!! GATTTGTTATAAAAGGGGAC+TGG + chr4_1:54492226-54492245 Msa0556340:intron 35.0%
ATTTGCGAAACAGTATGTAC+TGG - chr4_1:54492428-54492447 None:intergenic 35.0%
ATTCTGAATAAGAGAACGCA+GGG - chr4_1:54492797-54492816 None:intergenic 35.0%
AATTCTGAATAAGAGAACGC+AGG - chr4_1:54492798-54492817 None:intergenic 35.0%
! TTATCAGATTTTGTCAGACC+AGG + chr4_1:54492871-54492890 Msa0556340:intron 35.0%
GATACTCATACCAAAACCAA+GGG - chr4_1:54492911-54492930 None:intergenic 35.0%
AGATACTCATACCAAAACCA+AGG - chr4_1:54492912-54492931 None:intergenic 35.0%
AAAATTGCTGAACTCTTGTG+AGG - chr4_1:54492939-54492958 None:intergenic 35.0%
GAAAGGCTTAATGACATTGT+TGG + chr4_1:54492987-54493006 Msa0556340:CDS 35.0%
! TGTTGGAAGTGCATATTATG+TGG + chr4_1:54493004-54493023 Msa0556340:CDS 35.0%
TAAGATCTATGGAGAACTTC+AGG - chr4_1:54493032-54493051 None:intergenic 35.0%
CTTCTGTACTGTAAGATCTA+TGG - chr4_1:54493043-54493062 None:intergenic 35.0%
! AACGGAATCAGGCATTTTTA+GGG + chr4_1:54493130-54493149 Msa0556340:CDS 35.0%
! TTTGCTTCTGAAGATAAGGA+TGG - chr4_1:54493197-54493216 None:intergenic 35.0%
TGTCAAACGCCTACTAAATA+AGG + chr4_1:54493223-54493242 Msa0556340:CDS 35.0%
AACAATAATCTTGTGCTTGC+AGG + chr4_1:54493343-54493362 Msa0556340:intron 35.0%
AACCAAAATACTCACCCTTA+AGG - chr4_1:54493473-54493492 None:intergenic 35.0%
TTTATACTCATTTCGTTGGC+AGG + chr4_1:54493560-54493579 Msa0556340:intron 35.0%
TTCATCAGCAGTTAAAGTCT+TGG - chr4_1:54493592-54493611 None:intergenic 35.0%
CTGATGAACTCTATTATCTG+AGG + chr4_1:54493604-54493623 Msa0556340:CDS 35.0%
ATCCTTGGAGAACATTAACA+AGG + chr4_1:54493668-54493687 Msa0556340:CDS 35.0%
! TCATTCATATTTTTCTGGGC+AGG + chr4_1:54493749-54493768 Msa0556340:intron 35.0%
!! AGAAGAAGGTATTATTACCG+AGG - chr4_1:54493832-54493851 None:intergenic 35.0%
! GTTTTATAGGAACTTGGACT+TGG + chr4_1:54494231-54494250 Msa0556340:intron 35.0%
CATGAAGAACAACATGAACA+GGG - chr4_1:54494266-54494285 None:intergenic 35.0%
TCATGAAGAACAACATGAAC+AGG - chr4_1:54494267-54494286 None:intergenic 35.0%
TTCATGTTGTTCTTCATGAC+TGG + chr4_1:54494268-54494287 Msa0556340:CDS 35.0%
GGGTTTGTCAAATTATTGCA+TGG + chr4_1:54494324-54494343 Msa0556340:CDS 35.0%
ATCATAACTGAACCTTTGGA+AGG - chr4_1:54494365-54494384 None:intergenic 35.0%
TGATGTAAAGCAAATGCATG+TGG + chr4_1:54494381-54494400 Msa0556340:exon 35.0%
TAAAATAGTCTACAGAACCG+TGG + chr4_1:54494571-54494590 Msa0556340:three_prime_UTR 35.0%
ACGATTCATATCTTAAGCCA+CGG - chr4_1:54494591-54494610 None:intergenic 35.0%
TGGCTTAAGATATGAATCGT+AGG + chr4_1:54494591-54494610 Msa0556340:three_prime_UTR 35.0%
!! TAGAATTAGCTTTGCCTTGA+TGG + chr4_1:54494616-54494635 Msa0556340:three_prime_UTR 35.0%
!! AGAATTAGCTTTGCCTTGAT+GGG + chr4_1:54494617-54494636 Msa0556340:three_prime_UTR 35.0%
TAAATTATTCCCACCCATCA+AGG - chr4_1:54494633-54494652 None:intergenic 35.0%
! CCATTTCTCTAAGGGCATAT+GGG - chr4_1:54489750-54489769 None:intergenic 40.0%
! TCCATTTCTCTAAGGGCATA+TGG - chr4_1:54489751-54489770 None:intergenic 40.0%
GGTCAGTTTCCATTTCTCTA+AGG - chr4_1:54489759-54489778 None:intergenic 40.0%
AAATCTCTTGTCCAAATCCC+CGG - chr4_1:54490082-54490101 None:intergenic 40.0%
GGGATTTGGACAAGAGATTT+GGG + chr4_1:54490082-54490101 Msa0556340:CDS 40.0%
! TAGTAGTAAGTTGGAGGTTG+GGG + chr4_1:54490119-54490138 Msa0556340:intron 40.0%
TGAGTTTAAGGGTCAACAAG+TGG + chr4_1:54490197-54490216 Msa0556340:CDS 40.0%
GCTGTTGAGGATTGTTTGTT+TGG + chr4_1:54490462-54490481 Msa0556340:intron 40.0%
!! GGAAATGTTTCTCTAGGACT+TGG + chr4_1:54490483-54490502 Msa0556340:intron 40.0%
! TTGCAATTGCTGTTGTCATC+TGG - chr4_1:54490756-54490775 None:intergenic 40.0%
!! CCTTGGTGTCACTATATATG+GGG - chr4_1:54491352-54491371 None:intergenic 40.0%
!! CACCTTGGTGTCACTATATA+TGG - chr4_1:54491354-54491373 None:intergenic 40.0%
!! GACGTTTCAGGTTATGTGAA+GGG + chr4_1:54491479-54491498 Msa0556340:intron 40.0%
!! ACGTTTCAGGTTATGTGAAG+GGG + chr4_1:54491480-54491499 Msa0556340:intron 40.0%
TTGAAATAACGCCGCTAACA+CGG - chr4_1:54491646-54491665 None:intergenic 40.0%
ATACTCAGAAGATGATGCCA+AGG + chr4_1:54491741-54491760 Msa0556340:intron 40.0%
TATTTGTACCATGACAGCCT+TGG - chr4_1:54491761-54491780 None:intergenic 40.0%
! ATTTTGTCATCTTCAGGGTG+TGG + chr4_1:54491795-54491814 Msa0556340:intron 40.0%
TGAAAGAATATGCTCACCTC+AGG - chr4_1:54491838-54491857 None:intergenic 40.0%
!! AGGCTTTTTGTTTGAAGGGA+GGG - chr4_1:54491929-54491948 None:intergenic 40.0%
!! AAGGCTTTTTGTTTGAAGGG+AGG - chr4_1:54491930-54491949 None:intergenic 40.0%
!! GGCAAAGGCTTTTTGTTTGA+AGG - chr4_1:54491934-54491953 None:intergenic 40.0%
TGCATCATTCATGTGTTGCA+GGG + chr4_1:54491956-54491975 Msa0556340:intron 40.0%
TTCTTATCGCTTTATGTCGC+TGG + chr4_1:54492029-54492048 Msa0556340:intron 40.0%
GACGACTCATGTTGAAAAGT+TGG - chr4_1:54492085-54492104 None:intergenic 40.0%
TTTAGAAACTGGTCATGGGA+CGG + chr4_1:54492274-54492293 Msa0556340:intron 40.0%
TGTACTGGACAAAACAGTAC+AGG - chr4_1:54492413-54492432 None:intergenic 40.0%
! TCATTTAGTTCACGGTCACT+TGG + chr4_1:54492495-54492514 Msa0556340:intron 40.0%
TTCTGAATAAGAGAACGCAG+GGG - chr4_1:54492796-54492815 None:intergenic 40.0%
! GAACGGAATCAGGCATTTTT+AGG + chr4_1:54493129-54493148 Msa0556340:CDS 40.0%
! TGCCTTAAGGGTGAGTATTT+TGG + chr4_1:54493468-54493487 Msa0556340:intron 40.0%
GACCTTGTTAATGTTCTCCA+AGG - chr4_1:54493673-54493692 None:intergenic 40.0%
AGTGATACGAGACTCTTTCA+TGG - chr4_1:54493799-54493818 None:intergenic 40.0%
! CAACTGATGATTTGTCTCAC+CGG + chr4_1:54494463-54494482 Msa0556340:three_prime_UTR 40.0%
! GCATATGGGTTTGGTTTCTG+TGG - chr4_1:54489736-54489755 None:intergenic 45.0%
! TCTCTAAGGGCATATGGGTT+TGG - chr4_1:54489745-54489764 None:intergenic 45.0%
CCCATATGCCCTTAGAGAAA+TGG + chr4_1:54489747-54489766 Msa0556340:CDS 45.0%
GCTGGACTTGGACTGTAAAA+CGG - chr4_1:54489868-54489887 None:intergenic 45.0%
TTTACAGTCCAAGTCCAGCT+CGG + chr4_1:54489869-54489888 Msa0556340:intron 45.0%
GAAGCATATAAGGGCTGTGT+TGG + chr4_1:54489999-54490018 Msa0556340:CDS 45.0%
!! ATATAAGGGCTGTGTTGGCT+AGG + chr4_1:54490004-54490023 Msa0556340:CDS 45.0%
GGGGATTTGGACAAGAGATT+TGG + chr4_1:54490081-54490100 Msa0556340:CDS 45.0%
TTTGAACGGGCACAGCAATT+TGG + chr4_1:54490813-54490832 Msa0556340:intron 45.0%
CCCCATATATAGTGACACCA+AGG + chr4_1:54491349-54491368 Msa0556340:intron 45.0%
! TATCGACGTATCGACGTTTC+AGG + chr4_1:54491467-54491486 Msa0556340:intron 45.0%
!! CGACGTTTCAGGTTATGTGA+AGG + chr4_1:54491478-54491497 Msa0556340:intron 45.0%
!! CGTTTCAGGTTATGTGAAGG+GGG + chr4_1:54491481-54491500 Msa0556340:intron 45.0%
GCATGAAATAGAGCCGCTAT+CGG + chr4_1:54491552-54491571 Msa0556340:intron 45.0%
CATGAATGATGCAGAGGCAA+AGG - chr4_1:54491949-54491968 None:intergenic 45.0%
GCAACACATGAATGATGCAG+AGG - chr4_1:54491955-54491974 None:intergenic 45.0%
CTGCATCATTCATGTGTTGC+AGG + chr4_1:54491955-54491974 Msa0556340:intron 45.0%
ATTCATGTGTTGCAGGGACA+TGG + chr4_1:54491962-54491981 Msa0556340:intron 45.0%
TTAGAAACTGGTCATGGGAC+GGG + chr4_1:54492275-54492294 Msa0556340:intron 45.0%
CAAAACAGGTAGCAAGGAAC+TGG + chr4_1:54492299-54492318 Msa0556340:intron 45.0%
! GAAACTAGCTTCCTTGTCAG+AGG + chr4_1:54492524-54492543 Msa0556340:intron 45.0%
TTATCCTAGCACCTCTGACA+AGG - chr4_1:54492538-54492557 None:intergenic 45.0%
!! AATGCTAGTCTTCAGCTGAC+TGG - chr4_1:54492582-54492601 None:intergenic 45.0%
TCTGAATAAGAGAACGCAGG+GGG - chr4_1:54492795-54492814 None:intergenic 45.0%
AGGGCTTGTGAAGAAAAACC+TGG - chr4_1:54492892-54492911 None:intergenic 45.0%
! GGTTTTTCTTCACAAGCCCT+TGG + chr4_1:54492892-54492911 Msa0556340:intron 45.0%
! TCTTCACAAGCCCTTGGTTT+TGG + chr4_1:54492898-54492917 Msa0556340:intron 45.0%
ACAGTACAGAAGCTGATGTG+TGG + chr4_1:54493051-54493070 Msa0556340:intron 45.0%
GAAGCTGATGTGTGGAGTAT+AGG + chr4_1:54493059-54493078 Msa0556340:intron 45.0%
ATTCCGTTCGAGCCCAAAAT+GGG - chr4_1:54493118-54493137 None:intergenic 45.0%
!!! GCAGTTTTGAAAGCTGATCC+AGG + chr4_1:54493152-54493171 Msa0556340:CDS 45.0%
TCTGAAGATAAGGATGGCCA+GGG - chr4_1:54493191-54493210 None:intergenic 45.0%
! TTCTGAAGATAAGGATGGCC+AGG - chr4_1:54493192-54493211 None:intergenic 45.0%
GCCTACTAAATAAGGACCCT+CGG + chr4_1:54493231-54493250 Msa0556340:CDS 45.0%
! TCCGAGGGTCCTTATTTAGT+AGG - chr4_1:54493235-54493254 None:intergenic 45.0%
GAGGGAGCAATTTGCGTTAT+TGG + chr4_1:54493623-54493642 Msa0556340:CDS 45.0%
!!! GATATGCTGCCGTTTTTGCT+TGG - chr4_1:54493651-54493670 None:intergenic 45.0%
CAAAAACGGCAGCATATCCT+TGG + chr4_1:54493653-54493672 Msa0556340:CDS 45.0%
AACTCGAAGCTCTTGATCGT+TGG + chr4_1:54493991-54494010 Msa0556340:CDS 45.0%
ACTCGAAGCTCTTGATCGTT+GGG + chr4_1:54493992-54494011 Msa0556340:CDS 45.0%
ACAACATGAACAGGGATCGA+TGG - chr4_1:54494258-54494277 None:intergenic 45.0%
GATGGGAAGCTAAGCTTTCT+CGG + chr4_1:54494303-54494322 Msa0556340:CDS 45.0%
ATGGGAAGCTAAGCTTTCTC+GGG + chr4_1:54494304-54494323 Msa0556340:CDS 45.0%
! ACTGAACCTTTGGAAGGCTT+CGG - chr4_1:54494359-54494378 None:intergenic 45.0%
GCAAATGCATGTGGATATGC+TGG + chr4_1:54494390-54494409 Msa0556340:three_prime_UTR 45.0%
! GCTGGATTTTCTCTGCTATG+TGG + chr4_1:54494408-54494427 Msa0556340:three_prime_UTR 45.0%
!! TTAATGGGCTATGCTTGCGA+TGG - chr4_1:54494498-54494517 None:intergenic 45.0%
!! ATTAGCTTTGCCTTGATGGG+TGG + chr4_1:54494620-54494639 Msa0556340:three_prime_UTR 45.0%
!! TTAGCTTTGCCTTGATGGGT+GGG + chr4_1:54494621-54494640 Msa0556340:three_prime_UTR 45.0%
GGGTCTGTGGGATTTGTGTT+GGG - chr4_1:54489780-54489799 None:intergenic 50.0%
TACCGGTGTAGGGACTTTGT+GGG - chr4_1:54489801-54489820 None:intergenic 50.0%
TTACCGGTGTAGGGACTTTG+TGG - chr4_1:54489802-54489821 None:intergenic 50.0%
AAAGTCCCTACACCGGTAAC+CGG + chr4_1:54489803-54489822 Msa0556340:CDS 50.0%
TCTTTCCGGTTACCGGTGTA+GGG - chr4_1:54489811-54489830 None:intergenic 50.0%
ATCTTTCCGGTTACCGGTGT+AGG - chr4_1:54489812-54489831 None:intergenic 50.0%
GACGTCATCTTTCCGGTTAC+CGG - chr4_1:54489818-54489837 None:intergenic 50.0%
TTCAGAAACCGAGCTGGACT+TGG - chr4_1:54489880-54489899 None:intergenic 50.0%
GACTTCTTCAGAAACCGAGC+TGG - chr4_1:54489886-54489905 None:intergenic 50.0%
CTTATATGCTTCGCCGGAGA+CGG - chr4_1:54489991-54490010 None:intergenic 50.0%
GTCTCCGGCGAAGCATATAA+GGG + chr4_1:54489990-54490009 Msa0556340:CDS 50.0%
ACAGCCCTTATATGCTTCGC+CGG - chr4_1:54489997-54490016 None:intergenic 50.0%
!! CTGTGTTGGCTAGGAGACAA+GGG + chr4_1:54490013-54490032 Msa0556340:CDS 50.0%
TTGGAGGTTGGGGAAGAAGT+GGG + chr4_1:54490129-54490148 Msa0556340:CDS 50.0%
!!! AAGTGGGTAGGGGGCATTTT+GGG + chr4_1:54490145-54490164 Msa0556340:CDS 50.0%
TGCTCACTTCTGTGGTGAGA+CGG - chr4_1:54491610-54491629 None:intergenic 50.0%
AGCCATCATAGCCGTGTTAG+CGG + chr4_1:54491632-54491651 Msa0556340:intron 50.0%
CATGTGGCTAGTAAGTGGCA+AGG - chr4_1:54491695-54491714 None:intergenic 50.0%
AGATGATGCCAAGGCTGTCA+TGG + chr4_1:54491750-54491769 Msa0556340:intron 50.0%
GCACAGAGATCTTAAGCCTG+AGG + chr4_1:54491819-54491838 Msa0556340:intron 50.0%
ATCGCTTTATGTCGCTGGCA+CGG + chr4_1:54492034-54492053 Msa0556340:intron 50.0%
!! TCAGCTAGTCTTCAGCTGAC+TGG + chr4_1:54492117-54492136 Msa0556340:intron 50.0%
AGTCTTCAGCTGACTGGACT+TGG + chr4_1:54492123-54492142 Msa0556340:intron 50.0%
ACGGGACAAAACAGGTAGCA+AGG + chr4_1:54492293-54492312 Msa0556340:intron 50.0%
AGTCTTCAGCTGACTGGACA+TGG - chr4_1:54492576-54492595 None:intergenic 50.0%
TGAATAAGAGAACGCAGGGG+GGG - chr4_1:54492793-54492812 None:intergenic 50.0%
CTGAATAAGAGAACGCAGGG+GGG - chr4_1:54492794-54492813 None:intergenic 50.0%
! TATGTGGCAGTCGCCCATTT+TGG + chr4_1:54493102-54493121 Msa0556340:intron 50.0%
! ATGTGGCAGTCGCCCATTTT+GGG + chr4_1:54493103-54493122 Msa0556340:intron 50.0%
GATTCCGTTCGAGCCCAAAA+TGG - chr4_1:54493119-54493138 None:intergenic 50.0%
! TTTTGGGCTCGAACGGAATC+AGG + chr4_1:54493119-54493138 Msa0556340:CDS 50.0%
CAGCAGATATTCGCTTCCGA+GGG - chr4_1:54493250-54493269 None:intergenic 50.0%
GAAGCGAATATCTGCTGCTC+AGG + chr4_1:54493253-54493272 Msa0556340:CDS 50.0%
TTGTGCTTGCAGGTCATCCT+TGG + chr4_1:54493353-54493372 Msa0556340:intron 50.0%
GAGATCGTCATCCTTGCGTA+AGG + chr4_1:54493444-54493463 Msa0556340:CDS 50.0%
CTTGCGTAAGGCTGCCTTAA+GGG + chr4_1:54493456-54493475 Msa0556340:CDS 50.0%
ACTGGATACGCCACACAGAT+GGG + chr4_1:54494286-54494305 Msa0556340:CDS 50.0%
AGCTTAGCTTCCCATCTGTG+TGG - chr4_1:54494299-54494318 None:intergenic 50.0%
ATCTAGCCGAAGCCTTCCAA+AGG + chr4_1:54494350-54494369 Msa0556340:CDS 50.0%
GGGGTCTGTGGGATTTGTGT+TGG - chr4_1:54489781-54489800 None:intergenic 55.0%
AGGGACTTTGTGGGGTCTGT+GGG - chr4_1:54489792-54489811 None:intergenic 55.0%
TAGGGACTTTGTGGGGTCTG+TGG - chr4_1:54489793-54489812 None:intergenic 55.0%
ACCCCACAAAGTCCCTACAC+CGG + chr4_1:54489796-54489815 Msa0556340:CDS 55.0%
ACCGGTGTAGGGACTTTGTG+GGG - chr4_1:54489800-54489819 None:intergenic 55.0%
CGGCGATGACGTCATCTTTC+CGG - chr4_1:54489825-54489844 None:intergenic 55.0%
CGGAAAGATGACGTCATCGC+CGG + chr4_1:54489823-54489842 Msa0556340:CDS 55.0%
TTCCGGCTTCTTTCACTCGC+CGG - chr4_1:54489928-54489947 None:intergenic 55.0%
! CGACGCCAAGGAGGTTTTTC+CGG + chr4_1:54489950-54489969 Msa0556340:CDS 55.0%
CGTCTCCGGCGAAGCATATA+AGG + chr4_1:54489989-54490008 Msa0556340:CDS 55.0%
!! GCTGTGTTGGCTAGGAGACA+AGG + chr4_1:54490012-54490031 Msa0556340:CDS 55.0%
GGCTAGGAGACAAGGGAAGA+AGG + chr4_1:54490020-54490039 Msa0556340:CDS 55.0%
ACAAGGGAAGAAGGAAGCCG+CGG + chr4_1:54490029-54490048 Msa0556340:CDS 55.0%
ATACCGGAAGACGGAGAGGA+GGG + chr4_1:54490054-54490073 Msa0556340:CDS 55.0%
GTTGGAGGTTGGGGAAGAAG+TGG + chr4_1:54490128-54490147 Msa0556340:CDS 55.0%
AGGTTGGGGAAGAAGTGGGT+AGG + chr4_1:54490133-54490152 Msa0556340:CDS 55.0%
GGTTGGGGAAGAAGTGGGTA+GGG + chr4_1:54490134-54490153 Msa0556340:CDS 55.0%
GTTGGGGAAGAAGTGGGTAG+GGG + chr4_1:54490135-54490154 Msa0556340:CDS 55.0%
TTGGGGAAGAAGTGGGTAGG+GGG + chr4_1:54490136-54490155 Msa0556340:CDS 55.0%
!!! GAAGTGGGTAGGGGGCATTT+TGG + chr4_1:54490144-54490163 Msa0556340:CDS 55.0%
TGTGGTGAGACGGTGCATGT+GGG - chr4_1:54491600-54491619 None:intergenic 55.0%
ATGGCTGCTGCTCACTTCTG+TGG - chr4_1:54491618-54491637 None:intergenic 55.0%
TCGCTTTATGTCGCTGGCAC+GGG + chr4_1:54492035-54492054 Msa0556340:intron 55.0%
GTCATGGGACGGGACAAAAC+AGG + chr4_1:54492285-54492304 Msa0556340:intron 55.0%
!! GCTTCCTTGTCAGAGGTGCT+AGG + chr4_1:54492531-54492550 Msa0556340:intron 55.0%
! TCGCCCATTTTGGGCTCGAA+CGG + chr4_1:54493112-54493131 Msa0556340:CDS 55.0%
! GCTGATCCAGGCTTTGACGA+AGG + chr4_1:54493164-54493183 Msa0556340:CDS 55.0%
GCAGCAGATATTCGCTTCCG+AGG - chr4_1:54493251-54493270 None:intergenic 55.0%
CCTTAAGGCAGCCTTACGCA+AGG - chr4_1:54493458-54493477 None:intergenic 55.0%
CCTTGCGTAAGGCTGCCTTA+AGG + chr4_1:54493455-54493474 Msa0556340:CDS 55.0%
GACTGGATACGCCACACAGA+TGG + chr4_1:54494285-54494304 Msa0556340:CDS 55.0%
CTTGCGATGGCTTCAGATGC+CGG - chr4_1:54494485-54494504 None:intergenic 55.0%
CTTTCACTCGCCGGAGTCGA+CGG - chr4_1:54489919-54489938 None:intergenic 60.0%
CTCCGGCGAGTGAAAGAAGC+CGG + chr4_1:54489923-54489942 Msa0556340:CDS 60.0%
! ACCTCCTTGGCGTCGAGTTC+CGG - chr4_1:54489945-54489964 None:intergenic 60.0%
GGTCGCCGGAAAAACCTCCT+TGG - chr4_1:54489958-54489977 None:intergenic 60.0%
ATATGCTTCGCCGGAGACGG+CGG - chr4_1:54489988-54490007 None:intergenic 60.0%
GATACCGGAAGACGGAGAGG+AGG + chr4_1:54490053-54490072 Msa0556340:CDS 60.0%
TGGTGAGACGGTGCATGTGG+GGG - chr4_1:54491598-54491617 None:intergenic 60.0%
GTGGTGAGACGGTGCATGTG+GGG - chr4_1:54491599-54491618 None:intergenic 60.0%
CTGTGGTGAGACGGTGCATG+TGG - chr4_1:54491601-54491620 None:intergenic 60.0%
CGCCGCTAACACGGCTATGA+TGG - chr4_1:54491637-54491656 None:intergenic 60.0%
CAGGGACCTTCGTCAAAGCC+TGG - chr4_1:54493173-54493192 None:intergenic 60.0%
! CAGGCTTTGACGAAGGTCCC+TGG + chr4_1:54493171-54493190 Msa0556340:CDS 60.0%
!! TCCGTCCACTCCGTCGACTC+CGG + chr4_1:54489906-54489925 Msa0556340:CDS 65.0%
GAAGCCGGAACTCGACGCCA+AGG + chr4_1:54489938-54489957 Msa0556340:CDS 65.0%
ACCCTTTCCACCGCCGTCTC+CGG + chr4_1:54489975-54489994 Msa0556340:CDS 65.0%
GAAGGAAGCCGCGGCGATAC+CGG + chr4_1:54490038-54490057 Msa0556340:CDS 65.0%
TCCGTCTTCCGGTATCGCCG+CGG - chr4_1:54490049-54490068 None:intergenic 65.0%
GGCGATACCGGAAGACGGAG+AGG + chr4_1:54490050-54490069 Msa0556340:CDS 65.0%
GCACCCTCCTCTCCGTCTTC+CGG - chr4_1:54490060-54490079 None:intergenic 65.0%
! GAAGACGGAGAGGAGGGTGC+CGG + chr4_1:54490060-54490079 Msa0556340:CDS 65.0%
!! AAGACGGAGAGGAGGGTGCC+GGG + chr4_1:54490061-54490080 Msa0556340:CDS 65.0%
!! AGAGGAGGGTGCCGGGGATT+TGG + chr4_1:54490068-54490087 Msa0556340:CDS 65.0%
! CCACTGCACTGCGCCGATAG+CGG - chr4_1:54491568-54491587 None:intergenic 65.0%
CGCTATCGGCGCAGTGCAGT+GGG + chr4_1:54491566-54491585 Msa0556340:intron 65.0%
TGAGACGGTGCATGTGGGGG+AGG - chr4_1:54491595-54491614 None:intergenic 65.0%
GCCGGAGTCGACGGAGTGGA+CGG - chr4_1:54489910-54489929 None:intergenic 70.0%
ACTCGCCGGAGTCGACGGAG+TGG - chr4_1:54489914-54489933 None:intergenic 70.0%
GCCGGAACTCGACGCCAAGG+AGG + chr4_1:54489941-54489960 Msa0556340:CDS 70.0%
ACGGCGGTGGAAAGGGTCGC+CGG - chr4_1:54489972-54489991 None:intergenic 70.0%
GCCGGAGACGGCGGTGGAAA+GGG - chr4_1:54489979-54489998 None:intergenic 70.0%
GCCGCGGCGATACCGGAAGA+CGG + chr4_1:54490045-54490064 Msa0556340:CDS 70.0%
!! AGACGGAGAGGAGGGTGCCG+GGG + chr4_1:54490062-54490081 Msa0556340:CDS 70.0%
CCGCTATCGGCGCAGTGCAG+TGG + chr4_1:54491565-54491584 Msa0556340:intron 70.0%
CGCCGGAGACGGCGGTGGAA+AGG - chr4_1:54489980-54489999 None:intergenic 75.0%
TGCTTCGCCGGAGACGGCGG+TGG - chr4_1:54489985-54490004 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 54489712 54494804 54489712 ID=Msa0556340;Name=Msa0556340
chr4_1 mRNA 54489712 54494804 54489712 ID=Msa0556340-mRNA-1;Parent=Msa0556340;Name=Msa0556340-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0.55|0.5|1|0.55|0.6|10|421|447
chr4_1 exon 54489712 54489857 54489712 ID=Msa0556340-mRNA-1:exon:16059;Parent=Msa0556340-mRNA-1
chr4_1 exon 54489876 54490103 54489876 ID=Msa0556340-mRNA-1:exon:16060;Parent=Msa0556340-mRNA-1
chr4_1 exon 54490125 54490245 54490125 ID=Msa0556340-mRNA-1:exon:16061;Parent=Msa0556340-mRNA-1
chr4_1 exon 54492985 54493067 54492985 ID=Msa0556340-mRNA-1:exon:16062;Parent=Msa0556340-mRNA-1
chr4_1 exon 54493112 54493281 54493112 ID=Msa0556340-mRNA-1:exon:16063;Parent=Msa0556340-mRNA-1
chr4_1 exon 54493365 54493477 54493365 ID=Msa0556340-mRNA-1:exon:16064;Parent=Msa0556340-mRNA-1
chr4_1 exon 54493582 54493689 54493582 ID=Msa0556340-mRNA-1:exon:16065;Parent=Msa0556340-mRNA-1
chr4_1 exon 54493771 54493833 54493771 ID=Msa0556340-mRNA-1:exon:16066;Parent=Msa0556340-mRNA-1
chr4_1 exon 54493924 54494091 54493924 ID=Msa0556340-mRNA-1:exon:16067;Parent=Msa0556340-mRNA-1
chr4_1 exon 54494240 54494804 54494240 ID=Msa0556340-mRNA-1:exon:16068;Parent=Msa0556340-mRNA-1
chr4_1 CDS 54489712 54489857 54489712 ID=Msa0556340-mRNA-1:cds;Parent=Msa0556340-mRNA-1
chr4_1 CDS 54489876 54490103 54489876 ID=Msa0556340-mRNA-1:cds;Parent=Msa0556340-mRNA-1
chr4_1 CDS 54490125 54490245 54490125 ID=Msa0556340-mRNA-1:cds;Parent=Msa0556340-mRNA-1
chr4_1 CDS 54492985 54493067 54492985 ID=Msa0556340-mRNA-1:cds;Parent=Msa0556340-mRNA-1
chr4_1 CDS 54493112 54493281 54493112 ID=Msa0556340-mRNA-1:cds;Parent=Msa0556340-mRNA-1
chr4_1 CDS 54493365 54493477 54493365 ID=Msa0556340-mRNA-1:cds;Parent=Msa0556340-mRNA-1
chr4_1 CDS 54493582 54493689 54493582 ID=Msa0556340-mRNA-1:cds;Parent=Msa0556340-mRNA-1
chr4_1 CDS 54493771 54493833 54493771 ID=Msa0556340-mRNA-1:cds;Parent=Msa0556340-mRNA-1
chr4_1 CDS 54493924 54494091 54493924 ID=Msa0556340-mRNA-1:cds;Parent=Msa0556340-mRNA-1
chr4_1 CDS 54494240 54494383 54494240 ID=Msa0556340-mRNA-1:cds;Parent=Msa0556340-mRNA-1
chr4_1 three_prime_UTR 54494384 54494804 54494384 ID=Msa0556340-mRNA-1:three_prime_utr;Parent=Msa0556340-mRNA-1
Gene Sequence

>Msa0556340

ATGGGGGGTTGCACTTCAAAGCCACAGAAACCAAACCCATATGCCCTTAGAGAAATGGAAACTGACCCAACACAAATCCCACAGACCCCACAAAGTCCCTACACCGGTAACCGGAAAGATGACGTCATCGCCGGAAAAAAGTCTCCTCCAAGTCCAGCTCGGTTTCTGAAGAAGTCTCCGTCCACTCCGTCGACTCCGGCGAGTGAAAGAAGCCGGAACTCGACGCCAAGGAGGTTTTTCCGGCGACCCTTTCCACCGCCGTCTCCGGCGAAGCATATAAGGGCTGTGTTGGCTAGGAGACAAGGGAAGAAGGAAGCCGCGGCGATACCGGAAGACGGAGAGGAGGGTGCCGGGGATTTGGACAAGAGATTTGGTAAGTTGGAGGTTGGGGAAGAAGTGGGTAGGGGGCATTTTGGGTATACTTCTGCTGCTAAATTCAAAAAGGGTGAGTTTAAGGGTCAACAAGTGGCTGTGAAAGTGATTCCTAAAGCAAAGATGAAAGGCTTAATGACATTGTTGGAAGTGCATATTATGTGGCTCCTGAAGTTCTCCATAGATCTTACAGTACAGAAGCTGATTCGCCCATTTTGGGCTCGAACGGAATCAGGCATTTTTAGGGCAGTTTTGAAAGCTGATCCAGGCTTTGACGAAGGTCCCTGGCCATCCTTATCTTCAGAAGCAAAAGATTTTGTCAAACGCCTACTAAATAAGGACCCTCGGAAGCGAATATCTGCTGCTCAGGCTCTGAGTCATCCTTGGATACGTAATTACAATGATGTAAAAGTTCCGCTTGATATTTTAATATTCAAACTCATGAAGACATATATGAGATCGTCATCCTTGCGTAAGGCTGCCTTAAGGGCTTTATCCAAGACTTTAACTGCTGATGAACTCTATTATCTGAGGGAGCAATTTGCGTTATTGGAACCAAGCAAAAACGGCAGCATATCCTTGGAGAACATTAACAAGGCTTTGAAGAAATATGCAACAGATGCCATGAAAGAGTCTCGTATCACTGATTTTCTTTCCTCGCTGAGTTCATTACAATATAGAAGGATGGATTTTGAAGAATTTTGTGCGGCTGCATTAAGTGTGCATCAACTCGAAGCTCTTGATCGTTGGGAACAACATGCTCGCTGTGCATATGAACTTTTTGAGAAAGATGGAAACAGGGCAATTGTCATTGAAGAACTAGCTTCAGAACTTGGACTTGGTCCATCGATCCCTGTTCATGTTGTTCTTCATGACTGGATACGCCACACAGATGGGAAGCTAAGCTTTCTCGGGTTTGTCAAATTATTGCATGGTGTATCTAGCCGAAGCCTTCCAAAGGTTCAGTTATGA
Protein sequence

>Msa0556340

MGGCTSKPQKPNPYALREMETDPTQIPQTPQSPYTGNRKDDVIAGKKSPPSPARFLKKSPSTPSTPASERSRNSTPRRFFRRPFPPPSPAKHIRAVLARRQGKKEAAAIPEDGEEGAGDLDKRFGKLEVGEEVGRGHFGYTSAAKFKKGEFKGQQVAVKVIPKAKMKGLMTLLEVHIMWLLKFSIDLTVQKLIRPFWARTESGIFRAVLKADPGFDEGPWPSLSSEAKDFVKRLLNKDPRKRISAAQALSHPWIRNYNDVKVPLDILIFKLMKTYMRSSSLRKAALRALSKTLTADELYYLREQFALLEPSKNGSISLENINKALKKYATDAMKESRITDFLSSLSSLQYRRMDFEEFCAAALSVHQLEALDRWEQHARCAYELFEKDGNRAIVIEELASELGLGPSIPVHVVLHDWIRHTDGKLSFLGFVKLLHGVSSRSLPKVQL*