AlfalfaGEDB | Msa0556780

M. sativa cultivar zhongmu-4 / Msa0556780

KEGG: K14512
GO: GO:0000003 GO:0000165 GO:0000302 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005794 GO:0005802 GO:0005856 GO:0006464 GO:0006468 GO:0006725 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006935 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009314 GO:0009403 GO:0009404 GO:0009409 GO:0009411 GO:0009416 GO:0009524 GO:0009555 GO:0009574 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009682 GO:0009700 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009753 GO:0009755 GO:0009791 GO:0009856 GO:0009864 GO:0009867 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010120 GO:0010150 GO:0010183 GO:0010224 GO:0010229 GO:0010468 GO:0012505 GO:0015630 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019222 GO:0019438 GO:0019538 GO:0019748 GO:0022414 GO:0022622 GO:0023014 GO:0023052 GO:0031347 GO:0031349 GO:0031984 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0034641 GO:0035556 GO:0035670 GO:0036211 GO:0040011 GO:0042221 GO:0042330 GO:0042430 GO:0042435 GO:0042493 GO:0042542 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044272 GO:0044422 GO:0044424 GO:0044430 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0044706 GO:0045087 GO:0045088 GO:0045089 GO:0046217 GO:0046483 GO:0046677 GO:0048229 GO:0048364 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048868 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0050918 GO:0051301 GO:0051704 GO:0051707 GO:0051716 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0080134 GO:0080135 GO:0080136 GO:0090567 GO:0090693 GO:0097305 GO:0098542 GO:0098791 GO:0099402 GO:0140096 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0556780	Q07176.1	100.000	387	0	0	1	387	1	387	0.0	808

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0556780	sp\|Q07176\|MMK1_MEDSA	100.000	387	0	0	1	387	1	387	0.0	808

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0556780	G7JNP9	99.483	387	2	0	1	387	1	387	0.0	805

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0556780	Msa0652290	0.997707	1.409036e-247	-8.615850e-47
Msa0556780	Msa0694830	0.917943	2.865615e-86	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0556780	MtrunA17_Chr4g0045841	99.483	387	2	0	1	387	1	387	0.0	805
Msa0556780	MtrunA17_Chr4g0030151	77.534	365	81	1	22	385	6	370	0.0	612
Msa0556780	MtrunA17_Chr7g0248461	71.309	359	102	1	27	384	10	368	0.0	566
Msa0556780	MtrunA17_Chr8g0348481	71.309	359	102	1	27	384	9	367	0.0	561
Msa0556780	MtrunA17_Chr8g0387401	70.718	362	105	1	24	384	21	382	0.0	558
Msa0556780	MtrunA17_Chr4g0030231	70.411	365	107	1	21	384	6	370	0.0	556
Msa0556780	MtrunA17_Chr5g0397261	71.508	358	101	1	28	384	14	371	0.0	556
Msa0556780	MtrunA17_Chr3g0141871	58.960	346	138	4	41	384	19	362	7.69e-151	431
Msa0556780	MtrunA17_Chr8g0378831	54.286	350	148	6	41	384	19	362	8.44e-135	390
Msa0556780	MtrunA17_Chr4g0065851	51.506	332	153	4	61	384	31	362	4.72e-119	357

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0556780	AT2G43790.1	88.101	395	39	2	1	387	1	395	0.0	699
Msa0556780	AT3G45640.1	76.944	360	82	1	27	385	10	369	0.0	595
Msa0556780	AT4G01370.1	72.472	356	97	1	30	384	18	373	0.0	568
Msa0556780	AT3G59790.1	73.464	358	95	0	27	384	32	389	0.0	564
Msa0556780	AT4G11330.1	67.742	372	119	1	13	383	1	372	0.0	550
Msa0556780	AT1G07880.2	69.688	353	106	1	30	381	8	360	0.0	549
Msa0556780	AT1G01560.2	68.956	364	112	1	21	383	6	369	0.0	538
Msa0556780	AT2G46070.3	66.574	359	119	1	28	385	48	406	0.0	527
Msa0556780	AT2G46070.1	66.574	359	119	1	28	385	14	372	0.0	526
Msa0556780	AT1G01560.3	69.775	311	93	1	21	330	6	316	3.34e-165	466

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Find 122 sgRNAs with CRISPR-Local

Find 413 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCTAAGAGATACATT+AGG	0.548290	4_1:+55048800	Msa0556780:CDS
AAACCACCCATCATGCCAAT+CGG	0.549269	4_1:+55044526	Msa0556780:CDS
AAAGATTGACGGCGGTAAGG+AGG	0.633264	4_1:-55048829	None:intergenic
AACAAAATAATTAAATTCCA+AGG	0.551339	4_1:-55050602	None:intergenic
AACATATTCAGTCATAAAAT+CGG	0.416565	4_1:-55047356	None:intergenic
AACCCCAAATCATCTTCTGA+TGG	0.538287	4_1:-55048769	None:intergenic
AAGCATTCACAACACAAATC+AGG	0.479264	4_1:+55044167	Msa0556780:five_prime_UTR
AAGGCGCTTATGGTATTGTT+TGG	0.408506	4_1:+55044551	Msa0556780:CDS
AATACCTCCCTCTGAGGTGG+TGG	0.512927	4_1:-55046987	None:intergenic
AATCAAGCTGCTTCGCCATA+TGG	0.414727	4_1:+55044835	Msa0556780:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGAGAGAAAAAATGGTTAA+TGG	-	chr4_1:55044286-55044305	None:intergenic	30.0%
TTGAAGAAGAGAAACAACAA+TGG	+	chr4_1:55044345-55044364	Msa0556780:exon	30.0%
TTAATCTCAAACCACAATAG+CGG	-	chr4_1:55044953-55044972	None:intergenic	30.0%
AAATTGTTTCACAGCTGAAA+AGG	-	chr4_1:55045070-55045089	None:intergenic	30.0%
ACGACAAAATTCATTCCAAA+AGG	+	chr4_1:55045507-55045526	Msa0556780:intron	30.0%
CAAGGATATCAAACAGTAAT+AGG	-	chr4_1:55045550-55045569	None:intergenic	30.0%
CAACACTTTGTACTAAATAG+AGG	-	chr4_1:55045802-55045821	None:intergenic	30.0%
GAACACATTGTACTAAATAG+CGG	-	chr4_1:55046129-55046148	None:intergenic	30.0%
CAACACTTTGTACTAAATAG+CGG	-	chr4_1:55045802-55045821	None:intergenic	30.0%
CAGAAAAACATTCTATCATC+CGG	-	chr4_1:55046295-55046314	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	55043929	55050756	55043929	ID=Msa0556780;Name=Msa0556780
chr4_1	mRNA	55043929	55050756	55043929	ID=Msa0556780-mRNA-1;Parent=Msa0556780;Name=Msa0556780-mRNA-1;_AED=0.11;_eAED=0.11;_QI=282\|1\|1\|1\|0.83\|0.71\|7\|276\|387
chr4_1	exon	55043929	55044188	55043929	ID=Msa0556780-mRNA-1:exon:16363;Parent=Msa0556780-mRNA-1
chr4_1	exon	55044342	55044572	55044342	ID=Msa0556780-mRNA-1:exon:16364;Parent=Msa0556780-mRNA-1
chr4_1	exon	55044739	55044868	55044739	ID=Msa0556780-mRNA-1:exon:16365;Parent=Msa0556780-mRNA-1
chr4_1	exon	55046963	55047100	55046963	ID=Msa0556780-mRNA-1:exon:16366;Parent=Msa0556780-mRNA-1
chr4_1	exon	55047208	55047540	55047208	ID=Msa0556780-mRNA-1:exon:16367;Parent=Msa0556780-mRNA-1
chr4_1	exon	55048757	55048937	55048757	ID=Msa0556780-mRNA-1:exon:16368;Parent=Msa0556780-mRNA-1
chr4_1	exon	55050308	55050756	55050308	ID=Msa0556780-mRNA-1:exon:16369;Parent=Msa0556780-mRNA-1
chr4_1	five_prime_UTR	55043929	55044188	55043929	ID=Msa0556780-mRNA-1:five_prime_utr;Parent=Msa0556780-mRNA-1
chr4_1	five_prime_UTR	55044342	55044363	55044342	ID=Msa0556780-mRNA-1:five_prime_utr;Parent=Msa0556780-mRNA-1
chr4_1	CDS	55044364	55044572	55044364	ID=Msa0556780-mRNA-1:cds;Parent=Msa0556780-mRNA-1
chr4_1	CDS	55044739	55044868	55044739	ID=Msa0556780-mRNA-1:cds;Parent=Msa0556780-mRNA-1
chr4_1	CDS	55046963	55047100	55046963	ID=Msa0556780-mRNA-1:cds;Parent=Msa0556780-mRNA-1
chr4_1	CDS	55047208	55047540	55047208	ID=Msa0556780-mRNA-1:cds;Parent=Msa0556780-mRNA-1
chr4_1	CDS	55048757	55048937	55048757	ID=Msa0556780-mRNA-1:cds;Parent=Msa0556780-mRNA-1
chr4_1	CDS	55050308	55050480	55050308	ID=Msa0556780-mRNA-1:cds;Parent=Msa0556780-mRNA-1
chr4_1	three_prime_UTR	55050481	55050756	55050481	ID=Msa0556780-mRNA-1:three_prime_utr;Parent=Msa0556780-mRNA-1

Gene Sequence

>Msa0556780

ATGGAAGGAGGAGGAGCTCCACCAGCTGACACCGTGATGTCAGATGCTGCACCGGCGCCGCCGCAGATGGGGATCGAGAATATTCCGGCAGTCCTTAGCCACGGTGGTAGGTTCATTCAATACAACATTTTCGGCAACATTTTTGAAGTTACTGCAAAATACAAACCACCCATCATGCCAATCGGTAAAGGCGCTTATGGTATTGTTTGCTCTGCTCATAATTCGGAGACGAATGAACATGTCGCGGTTAAGAAGATTGCAAATGCATTTGACAACAAGATTGATGCCAAGAGGACTCTCCGTGAAATCAAGCTGCTTCGCCATATGGATCATGAAAACGTGGTTGCAATCAGGGATATAGTGCCACCACCTCAGAGGGAGGTATTCAATGATGTTTACATTGCATATGAGCTAATGGACACCGACCTTCACCAAATCATTCGATCAAATCAAGCACTATCGGAGGAGCACTGTCAGTACTTTCTGTACCAAATCCTTCGTGGTTTGAAGTACATACATTCTGCAAATGTTCTGCATAGGGACTTAAAACCCAGCAACCTTCTCCTGAACGCCAACTGTGACTTAAAGATTTGTGATTTTGGACTGGCCCGTGTAACCTCTGAAACCGATTTTATGACTGAATATGTTGTTACTAGATGGTACCGTGCACCAGAGCTTCTGTTAAACTCTTCTGATTATACAGCAGCAATTGATGTATGGTCTGTTGGTTGTATTTTCATGGAACTGATGGATCGAAAGCCTTTGTTTCCTGGCAGAGATCATGTGCATCAGCTGCGTCTACTCATGGAGTTGATCGGTACCCCATCAGAAGATGATTTGGGGTTTCTGAATGAAAATGCTAAGAGATACATTAGGCAACTACCTCCTTACCGCCGTCAATCTTTCCAAGAAAAGTTTCCGCATGTCCATCCTGAAGCTATAGATCTTGTTGAAAAAATGTTAACTTTTGATCCTAGAAAAAGAATTACTGTTGAAGATGCACTGGCACACCCCTACTTGACATCTCTGCATGACATCAGTGATGAACCTGTGTGCATGACTCCCTTCAGCTTTGACTTTGAACAGCATGCATTGACCGAGGAACAGATGAAAGAACTGATATACAGAGAGGCTCTAGCATTTAACCCTGAGTACCAGCAGTAG

Protein sequence

>Msa0556780

MEGGGAPPADTVMSDAAPAPPQMGIENIPAVLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSAHNSETNEHVAVKKIANAFDNKIDAKRTLREIKLLRHMDHENVVAIRDIVPPPQREVFNDVYIAYELMDTDLHQIIRSNQALSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLMELIGTPSEDDLGFLNENAKRYIRQLPPYRRQSFQEKFPHVHPEAIDLVEKMLTFDPRKRITVEDALAHPYLTSLHDISDEPVCMTPFSFDFEQHALTEEQMKELIYREALAFNPEYQQ*