AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0557330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0557330 MtrunA17_Chr4g0046401 91.655 719 31 1 1 690 1 719 0.0 1341
Msa0557330 MtrunA17_Chr1g0186381 60.028 723 256 5 3 695 4 723 0.0 905
Msa0557330 MtrunA17_Chr2g0307191 43.759 697 338 11 20 683 15 690 0.0 592
Msa0557330 MtrunA17_Chr3g0095791 42.672 696 346 9 20 683 15 689 0.0 589
Msa0557330 MtrunA17_Chr2g0298581 41.463 697 356 7 20 684 15 691 0.0 583
Msa0557330 MtrunA17_Chr3g0077511 41.834 698 352 8 20 683 15 692 0.0 577
Msa0557330 MtrunA17_Chr3g0102531 35.364 673 383 9 59 690 52 713 2.43e-140 428
Msa0557330 MtrunA17_Chr3g0102551 35.833 720 393 16 21 690 21 721 2.69e-140 429
Msa0557330 MtrunA17_Chr3g0102541 35.451 677 381 9 59 690 52 717 3.00e-140 428
Msa0557330 MtrunA17_Chr4g0073711 30.577 762 411 14 24 683 251 996 5.28e-114 367
Msa0557330 MtrunA17_Chr2g0284211 31.403 777 412 15 15 683 172 935 5.97e-114 366
Msa0557330 MtrunA17_Chr8g0379241 31.218 788 419 19 4 683 175 947 3.44e-113 364
Msa0557330 MtrunA17_Chr8g0364641 31.225 759 403 18 19 683 206 939 4.48e-111 358
Msa0557330 MtrunA17_Chr1g0183381 30.749 761 411 17 24 686 123 865 1.01e-109 353
Msa0557330 MtrunA17_Chr2g0322361 31.863 703 406 18 40 684 37 724 3.38e-108 345
Msa0557330 MtrunA17_Chr2g0322371 32.756 693 392 18 57 691 45 721 2.61e-107 342
Msa0557330 MtrunA17_Chr2g0322351 32.967 637 366 12 57 645 47 670 2.85e-101 326
Msa0557330 MtrunA17_Chr4g0025201 30.712 674 404 16 57 677 47 710 4.27e-98 318
Msa0557330 MtrunA17_Chr4g0039801 28.242 825 417 18 24 683 289 1103 1.40e-89 303
Msa0557330 MtrunA17_Chr5g0410641 28.110 836 424 18 14 683 258 1082 1.62e-89 303
Msa0557330 MtrunA17_Chr7g0269741 27.857 840 423 18 15 683 304 1131 5.56e-89 302
Msa0557330 MtrunA17_Chr1g0165411 27.907 817 419 20 24 683 261 1064 1.08e-86 295
Msa0557330 MtrunA17_Chr1g0165421 27.644 832 416 20 24 683 275 1092 5.59e-85 290
Msa0557330 MtrunA17_Chr2g0297351 26.481 827 429 22 24 686 175 986 2.49e-82 281
Msa0557330 MtrunA17_Chr8g0383701 36.387 382 210 7 24 382 289 660 4.77e-73 256
Msa0557330 MtrunA17_Chr8g0383701 31.487 343 191 8 379 683 718 1054 3.40e-42 165
Msa0557330 MtrunA17_Chr7g0267731 36.772 378 212 8 24 381 183 553 1.97e-72 253
Msa0557330 MtrunA17_Chr7g0267731 29.293 297 170 5 421 683 654 944 2.96e-34 140
Msa0557330 MtrunA17_Chr3g0088821 37.830 341 191 4 59 379 300 639 8.51e-71 249
Msa0557330 MtrunA17_Chr3g0088821 29.052 327 195 5 390 683 714 1036 2.44e-37 150
Msa0557330 MtrunA17_Chr2g0296991 36.148 379 209 8 24 379 222 590 2.09e-70 248
Msa0557330 MtrunA17_Chr2g0296991 30.218 321 186 5 396 683 687 1002 3.93e-39 155
Msa0557330 MtrunA17_Chr1g0201731 36.675 379 213 8 24 382 291 662 2.71e-70 248
Msa0557330 MtrunA17_Chr1g0201731 31.595 326 185 6 390 682 734 1054 1.62e-38 154
Msa0557330 MtrunA17_Chr8g0352231 38.192 343 191 5 59 381 300 641 5.23e-69 244
Msa0557330 MtrunA17_Chr8g0352231 29.907 321 188 5 396 683 720 1036 2.44e-38 153
Msa0557330 MtrunA17_Chr3g0078671 35.356 379 218 8 24 382 238 609 2.91e-67 239
Msa0557330 MtrunA17_Chr3g0078671 27.826 345 209 8 376 683 666 1007 7.06e-38 151
Msa0557330 MtrunA17_Chr3g0137951 36.170 376 213 7 24 379 281 649 3.85e-67 239
Msa0557330 MtrunA17_Chr3g0137951 29.448 326 191 6 392 683 724 1044 2.17e-37 150
Msa0557330 MtrunA17_Chr7g0274751 32.549 510 244 13 59 470 141 648 1.20e-66 234
Msa0557330 MtrunA17_Chr2g0322341 37.419 310 174 7 53 349 45 347 1.86e-63 215
Msa0557330 MtrunA17_Chr2g0307241 47.312 186 89 2 20 205 15 191 1.35e-58 197
Msa0557330 MtrunA17_Chr2g0322331 25.231 325 208 5 394 684 32 355 2.80e-20 93.6
Msa0557330 MtrunA17_Chr2g0307231 46.078 102 50 2 333 430 2 102 8.77e-18 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0557330 AT4G24000.1 36.755 721 387 14 10 690 11 702 6.71e-155 466
Msa0557330 AT4G24010.1 36.200 721 394 12 10 688 14 710 8.89e-153 461
Msa0557330 AT4G23990.1 36.791 723 395 11 6 688 29 729 1.90e-150 455
Msa0557330 AT1G55850.1 34.027 673 380 10 57 690 64 711 1.23e-129 400
Msa0557330 AT5G17420.1 31.593 728 385 13 59 683 267 984 5.03e-115 370
Msa0557330 AT5G64740.1 31.074 782 402 18 24 683 276 1042 7.44e-113 366
Msa0557330 AT4G24000.2 35.970 531 282 9 196 690 2 510 2.62e-109 342
Msa0557330 AT5G09870.1 30.937 779 404 21 24 683 264 1027 3.51e-109 355
Msa0557330 AT2G25540.1 29.912 799 429 19 3 683 233 1018 3.53e-108 353
Msa0557330 AT4G32410.1 30.412 776 412 18 24 683 275 1038 9.41e-108 352
Msa0557330 AT4G18780.1 31.186 776 400 17 24 683 184 941 2.07e-107 349
Msa0557330 AT4G23990.2 36.415 530 284 8 196 688 2 515 7.46e-105 330
Msa0557330 AT2G32530.1 31.936 692 368 24 34 646 30 697 1.12e-102 331
Msa0557330 AT2G32540.1 29.487 702 399 17 59 684 51 732 1.80e-102 330
Msa0557330 AT4G15320.5 30.942 711 404 20 37 677 36 729 2.94e-101 327
Msa0557330 AT4G15320.3 30.942 711 404 20 37 677 36 729 4.36e-101 327
Msa0557330 AT4G15320.4 30.737 706 390 20 59 677 51 744 2.18e-99 323
Msa0557330 AT2G32620.1 30.367 708 387 22 59 684 51 734 8.98e-97 315
Msa0557330 AT4G15290.1 31.547 653 373 19 59 647 51 693 1.78e-95 312
Msa0557330 AT2G32610.1 30.977 665 353 20 59 642 51 690 3.67e-94 308
Msa0557330 AT2G32620.2 35.189 503 268 14 59 518 51 538 8.38e-92 296
Msa0557330 AT2G32620.3 33.898 531 276 15 59 529 51 566 4.86e-91 296
Msa0557330 AT4G38190.1 28.164 806 423 18 24 683 272 1067 1.00e-89 303
Msa0557330 AT1G32180.1 27.337 845 424 20 15 683 113 943 3.84e-88 297
Msa0557330 AT1G32180.2 27.337 845 424 20 15 683 113 943 3.84e-88 297
Msa0557330 AT1G02730.1 27.967 851 411 22 24 691 318 1149 1.02e-86 296
Msa0557330 AT4G15320.2 30.816 662 332 20 37 602 36 667 1.83e-86 288
Msa0557330 AT2G33100.2 26.754 841 433 22 13 683 172 999 2.84e-86 293
Msa0557330 AT2G33100.1 26.754 841 433 22 13 683 172 999 2.84e-86 293
Msa0557330 AT2G32620.4 29.758 662 360 21 104 684 1 638 7.77e-85 281
Msa0557330 AT3G03050.1 26.124 823 435 16 24 683 294 1106 4.00e-84 288
Msa0557330 AT4G15320.1 29.197 685 319 21 59 602 51 710 1.68e-79 271
Msa0557330 AT4G39350.1 37.173 382 207 8 24 382 277 648 4.21e-71 251
Msa0557330 AT4G39350.1 31.193 327 187 6 390 683 720 1041 1.88e-35 144
Msa0557330 AT2G21770.1 36.341 399 214 9 8 382 271 653 8.47e-71 250
Msa0557330 AT2G21770.1 30.678 339 193 7 380 683 714 1045 6.14e-40 158
Msa0557330 AT5G05170.1 36.170 376 213 5 24 379 259 627 4.50e-70 248
Msa0557330 AT5G05170.1 29.052 327 195 5 390 683 701 1023 2.81e-37 150
Msa0557330 AT5G44030.1 35.884 379 210 8 24 379 215 583 6.62e-69 244
Msa0557330 AT5G44030.1 31.988 322 181 7 396 683 690 1007 4.99e-39 155
Msa0557330 AT5G44030.2 35.884 379 210 8 24 379 244 612 1.07e-68 244
Msa0557330 AT5G44030.2 31.988 322 181 7 396 683 719 1036 5.67e-39 155
Msa0557330 AT5G44030.3 38.689 305 167 5 91 379 4 304 1.32e-64 229
Msa0557330 AT5G44030.3 31.988 322 181 7 396 683 411 728 2.83e-39 155
Msa0557330 AT5G16910.1 30.698 430 216 9 24 379 297 718 4.38e-54 201
Msa0557330 AT5G16910.1 26.531 294 184 4 420 683 815 1106 4.25e-27 118

Find 172 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAAAGTGGGTTCCTTAAT+TGG 0.150834 4_1:+55643459 None:intergenic
CTCTCCTTCATTTGGTTCCT+TGG 0.172567 4_1:-55643585 Msa0557330:CDS
CTCTTTATTGTTTGCCCCTT+TGG 0.176106 4_1:-55641521 Msa0557330:CDS
GGAAGTCGTATTTATCATTT+TGG 0.178591 4_1:+55641086 None:intergenic
CTGCAACTTCGAGAATATTT+TGG 0.180704 4_1:-55642026 Msa0557330:CDS
GATATGAAACTGGCACTAAA+TGG 0.224428 4_1:-55641899 Msa0557330:CDS
TGATGATAAGCAACATCTTT+TGG 0.228233 4_1:+55643745 None:intergenic
TAGGCTTCTTGTTCTATTAC+AGG 0.251600 4_1:-55643689 Msa0557330:CDS
CCTCAGTTCTGTCTGCTAAA+TGG 0.265909 4_1:-55641483 Msa0557330:CDS
TCATCCTCTGGCAATCTCTC+TGG 0.273425 4_1:+55643522 None:intergenic
TTACTAGAAGTCTTCTTAAC+TGG 0.287101 4_1:-55641274 Msa0557330:CDS
TGGAGTTTATAGAGTGATAT+TGG 0.310644 4_1:-55640996 Msa0557330:CDS
TCATCCTCTGCTTTATTAGT+AGG 0.327040 4_1:+55641127 None:intergenic
GCAAGGGATGGACGGGCTTA+AGG 0.330461 4_1:-55642253 Msa0557330:CDS
AAATCATTCTCTCCTTCATT+TGG 0.335597 4_1:-55643593 Msa0557330:CDS
AATTAAGGAACCCACTTTAG+AGG 0.342719 4_1:-55643457 Msa0557330:CDS
GGCAGAGAAGCAAAAGATTA+AGG 0.344678 4_1:-55643196 Msa0557330:intron
CTCCTTCATTCCATGGCATT+AGG 0.345506 4_1:-55643708 Msa0557330:CDS
TTGCAATCTATATGGTTGTT+TGG 0.355256 4_1:-55641194 Msa0557330:CDS
TCAACTACTTGCAATCTATA+TGG 0.355613 4_1:-55641202 Msa0557330:CDS
ATGCACTGCAGATCCAATTA+AGG 0.368192 4_1:-55643472 Msa0557330:CDS
GGATCAATGAGCAGAGAATC+TGG 0.379322 4_1:-55641234 Msa0557330:CDS
GACAGGGAGGATGATATCTT+TGG 0.381870 4_1:+55642435 None:intergenic
CAAAGCAGAAAAGTAGGCCT+TGG 0.385342 4_1:+55643260 None:intergenic
TAACTGGAAGGTTATCATCT+AGG 0.394103 4_1:-55643817 Msa0557330:five_prime_UTR
ATATGAAACTGGCACTAAAT+GGG 0.398753 4_1:-55641898 Msa0557330:CDS
GGTTATCATCTAGGGAGAAA+TGG 0.399274 4_1:-55643808 Msa0557330:exon
ATCACCAGCCCTTCAATGAT+AGG 0.399749 4_1:+55640908 None:intergenic
TGTTCCAAGACCAAGAAAAC+AGG 0.401660 4_1:-55643656 Msa0557330:CDS
CTTGGGAGTTTGCAAGGTGG+TGG 0.404254 4_1:-55643323 Msa0557330:CDS
CCAAGGAACTGTGGCCTAGA+TGG 0.410757 4_1:+55641702 None:intergenic
CAAGGGATGGACGGGCTTAA+GGG 0.413602 4_1:-55642252 Msa0557330:CDS
GCATTGTAACGGATGGAATT+CGG 0.422318 4_1:-55641736 Msa0557330:CDS
AGATGTTGCTTATCATCAAT+AGG 0.424402 4_1:-55643740 Msa0557330:CDS
CATGTGTATCTTTCAGATGA+TGG 0.428039 4_1:-55643381 Msa0557330:CDS
CTGTGTTACCTTAGGATACA+AGG 0.430250 4_1:+55641455 None:intergenic
AAAGCAGAAAAGTAGGCCTT+GGG 0.434065 4_1:+55643261 None:intergenic
GAGTGATATTGGTGGGTGAT+TGG 0.434933 4_1:-55640985 Msa0557330:CDS
GCTTCTTGTAGATATGAAAC+TGG 0.436604 4_1:-55641909 Msa0557330:CDS
TGAGGGCTCCAGCTTTGAAA+TGG 0.444970 4_1:+55642677 None:intergenic
CATCCTCTGGCAATCTCTCT+GGG 0.449447 4_1:+55643523 None:intergenic
TCATTGAAGGGCTGGTGATA+AGG 0.449469 4_1:-55640904 Msa0557330:CDS
TACTAATCCAAGGCACTAGA+TGG 0.455870 4_1:-55641653 Msa0557330:CDS
TCCTTGGCCAAGCTTATCGC+TGG 0.456621 4_1:-55643569 Msa0557330:CDS
AGTGATATTGGTGGGTGATT+GGG 0.457979 4_1:-55640984 Msa0557330:CDS
ATAAACTACCCTATCATTGA+AGG 0.469163 4_1:-55640917 Msa0557330:CDS
AGTAATACTATCTCTTGAAA+AGG 0.469960 4_1:+55643025 None:intergenic
GATGCTTTACTGAAGAAAGC+TGG 0.470262 4_1:-55641172 Msa0557330:CDS
GGGAAGACATATCGTGAAAC+GGG 0.471525 4_1:+55643543 None:intergenic
GAGGAAATTGAACAAAAGAC+AGG 0.480108 4_1:+55642418 None:intergenic
CTACCCTATCATTGAAGGGC+TGG 0.482472 4_1:-55640912 Msa0557330:CDS
AGTCCCCACCATTTCAAAGC+TGG 0.483676 4_1:-55642685 Msa0557330:CDS
CTTAAGGGACCTGTATTGTC+AGG 0.484003 4_1:-55642237 Msa0557330:CDS
GGCTCCAGCTTTGAAATGGT+GGG 0.486191 4_1:+55642681 None:intergenic
GCAGGGAGCTTGTCATCCTC+TGG 0.486915 4_1:+55643510 None:intergenic
CAAGGAGCCATGGCAACAAA+TGG 0.486940 4_1:+55643628 None:intergenic
CCATCTAGGCCACAGTTCCT+TGG 0.487196 4_1:-55641702 Msa0557330:CDS
ACAATCTAGAACTAGGATGT+AGG 0.492284 4_1:+55642515 None:intergenic
AGGCTTCTTGTTCTATTACA+GGG 0.492603 4_1:-55643688 Msa0557330:CDS
AACTGGAAGGTTATCATCTA+GGG 0.494270 4_1:-55643816 Msa0557330:five_prime_UTR
GTATGGTGTGAGGAAGGCTT+GGG 0.495077 4_1:-55643340 Msa0557330:CDS
AGTATTCATCACCTCTAAAG+TGG 0.497726 4_1:+55643446 None:intergenic
TATTCTGTACCTTCTGCAGA+AGG 0.499017 4_1:+55643296 None:intergenic
TTGTAATGATAAAACTTGCA+AGG 0.499402 4_1:+55640939 None:intergenic
GAAGGTACAGAATAAAGAAC+AGG 0.500742 4_1:-55643287 Msa0557330:CDS
AAGCATGTGCCTGACAATAC+AGG 0.500887 4_1:+55642228 None:intergenic
TGTATGGTGTGAGGAAGGCT+TGG 0.500918 4_1:-55643341 Msa0557330:CDS
CAGAGTACCATCTAGTGCCT+TGG 0.501479 4_1:+55641646 None:intergenic
CTGGAGGAACACTACATAAG+TGG 0.503239 4_1:-55641255 Msa0557330:CDS
TTGGGACAAAATGTTCATAC+AGG 0.504326 4_1:-55640966 Msa0557330:CDS
CAAAGGGGCAAACAATAAAG+AGG 0.504519 4_1:+55641522 None:intergenic
GGATTTATCTTGCATTGTAA+CGG 0.506211 4_1:-55641747 Msa0557330:CDS
GGTGGCTTCCCTTCTGCAGA+AGG 0.510610 4_1:-55643305 Msa0557330:CDS
TGGGAAGACATATCGTGAAA+CGG 0.511367 4_1:+55643542 None:intergenic
TTATCTTGCATTGTAACGGA+TGG 0.511997 4_1:-55641743 Msa0557330:CDS
TGCCAGGAGTAGTGTTTACA+TGG 0.512757 4_1:-55643217 Msa0557330:CDS
AGCCTAATGCCATGGAATGA+AGG 0.514055 4_1:+55643706 None:intergenic
GATGGTGGCAAAACACCAAA+GGG 0.515466 4_1:+55641506 None:intergenic
TGCCATGTAAACACTACTCC+TGG 0.515527 4_1:+55643215 None:intergenic
GTAGTCGAAGATTTCCTGAC+TGG 0.518872 4_1:-55641768 Msa0557330:CDS
GGAGAAATGGAGGTAAATCA+AGG 0.519558 4_1:-55643795 Msa0557330:exon
ATATTAAGCGTTTGTTATTG+CGG 0.519639 4_1:+55640650 None:intergenic
TACAATGGCAAGGGATGGAC+GGG 0.522235 4_1:-55642260 Msa0557330:CDS
GGGGAAGCCATTTGTTGCCA+TGG 0.523506 4_1:-55643635 Msa0557330:CDS
AATGCAAGATAAATCCAGTC+AGG 0.527019 4_1:+55641754 None:intergenic
ATGGCATATCGAGCTGAAGT+TGG 0.527550 4_1:+55642474 None:intergenic
TGGAATACCCTTGTATCCTA+AGG 0.531703 4_1:-55641463 Msa0557330:intron
GAACAAGAAGCCTAATGCCA+TGG 0.532750 4_1:+55643698 None:intergenic
CAATCTAGAACTAGGATGTA+GGG 0.534011 4_1:+55642516 None:intergenic
ACACATGCTCCTTCATTCCA+TGG 0.536078 4_1:-55643715 Msa0557330:CDS
TGTAATGATAAAACTTGCAA+GGG 0.538161 4_1:+55640940 None:intergenic
TTGAACAACTTCAGCTACAA+TGG 0.538983 4_1:-55642275 Msa0557330:intron
GGGCTCCAGCTTTGAAATGG+TGG 0.541590 4_1:+55642680 None:intergenic
CAAGGCACTAGATGGTACTC+TGG 0.543521 4_1:-55641645 Msa0557330:intron
ACTCTCCAAAGCAGAAAAGT+AGG 0.544277 4_1:+55643254 None:intergenic
ATGAAAAGGGTATCATTGTA+CGG 0.545021 4_1:-55642201 Msa0557330:CDS
CTCACACCATACAGAGTCAT+GGG 0.545146 4_1:+55643351 None:intergenic
AGATCATTCATCGGTCATTG+AGG 0.545847 4_1:-55642997 Msa0557330:intron
GGAAGGCTTGGGAGTTTGCA+AGG 0.546262 4_1:-55643329 Msa0557330:CDS
TACGGAAATCAAGCGAATGA+AGG 0.548147 4_1:-55642183 Msa0557330:intron
CGGGACGCCAGCGATAAGCT+TGG 0.548345 4_1:+55643562 None:intergenic
ATGTGTATCTTTCAGATGAT+GGG 0.551013 4_1:-55643380 Msa0557330:CDS
CTACAATGGCAAGGGATGGA+CGG 0.551068 4_1:-55642261 Msa0557330:CDS
AAATATGTTGATTGTGAGGA+GGG 0.553265 4_1:+55641030 None:intergenic
TCACCAGCCCTTCAATGATA+GGG 0.553988 4_1:+55640909 None:intergenic
AGGATGATATCTTTGGATCA+AGG 0.554905 4_1:+55642442 None:intergenic
AATATTCTCGAAGTTGCAGC+AGG 0.557617 4_1:+55642030 None:intergenic
CATATGAACACATCAACAGC+AGG 0.558578 4_1:+55643492 None:intergenic
TCGAGCAATGTATTCCGTCC+CGG 0.558627 4_1:+55641948 None:intergenic
ATTGTGAGGAGGGCAAGCAT+TGG 0.559251 4_1:+55641040 None:intergenic
CTAGAAGTCTTCTTAACTGG+AGG 0.559844 4_1:-55641271 Msa0557330:CDS
GGATGGTGGCAAAACACCAA+AGG 0.560347 4_1:+55641505 None:intergenic
TTGAATGATGTACTAATCCA+AGG 0.561797 4_1:-55641663 Msa0557330:CDS
TGGCCATACAAGGACATTGA+GGG 0.563595 4_1:+55642660 None:intergenic
GACTCTGTATGGTGTGAGGA+AGG 0.567745 4_1:-55643346 Msa0557330:CDS
ACATGTCACAATCTAGAACT+AGG 0.568310 4_1:+55642508 None:intergenic
CTAATGTTGTGAAATTTCTG+AGG 0.573072 4_1:+55642399 None:intergenic
TTGGCCAAGGAACCAAATGA+AGG 0.575063 4_1:+55643581 None:intergenic
CTCGAAACATAGACAAGTTG+AGG 0.577540 4_1:+55642724 None:intergenic
CCTCACACCATACAGAGTCA+TGG 0.580155 4_1:+55643350 None:intergenic
AGAAGATATCATTGATGATG+TGG 0.580750 4_1:-55642761 Msa0557330:CDS
GACAAAATATGTTGATTGTG+AGG 0.583493 4_1:+55641026 None:intergenic
CATTTAGCAGACAGAACTGA+GGG 0.584403 4_1:+55641484 None:intergenic
TAATACATCAAGTAACTGGA+AGG 0.585281 4_1:-55643829 None:intergenic
GCTCCAGCTTTGAAATGGTG+GGG 0.590422 4_1:+55642682 None:intergenic
TTGAGGATAGTCCAGTGCCA+TGG 0.594262 4_1:+55643413 None:intergenic
CAGACAGAACTGAGGGATGG+TGG 0.599865 4_1:+55641491 None:intergenic
ATGGCCATACAAGGACATTG+AGG 0.604384 4_1:+55642659 None:intergenic
GAGAAATGGAGGTAAATCAA+GGG 0.605046 4_1:-55643794 Msa0557330:exon
CAACTTCAGCTACAATGGCA+AGG 0.607668 4_1:-55642270 Msa0557330:intron
TGGACATGGCAGGTATTGAG+AGG 0.609066 4_1:+55643765 None:intergenic
GCCAGCGATAAGCTTGGCCA+AGG 0.610444 4_1:+55643568 None:intergenic
CAAGGGACGCATTTCACAGT+CGG 0.610991 4_1:-55640876 Msa0557330:intron
AAAGGGGCAAACAATAAAGA+GGG 0.612126 4_1:+55641523 None:intergenic
TGAAGGGCTGGTGATAAGGA+AGG 0.613741 4_1:-55640900 Msa0557330:CDS
CTTGCCTACTAATAAAGCAG+AGG 0.614053 4_1:-55641131 Msa0557330:CDS
TCAGCTACAATGGCAAGGGA+TGG 0.617186 4_1:-55642265 Msa0557330:intron
AAAATATGTTGATTGTGAGG+AGG 0.617494 4_1:+55641029 None:intergenic
TAAACTACCCTATCATTGAA+GGG 0.618147 4_1:-55640916 Msa0557330:CDS
TATGAAACTGGCACTAAATG+GGG 0.620691 4_1:-55641897 Msa0557330:CDS
ATTCTGTACCTTCTGCAGAA+GGG 0.622468 4_1:+55643297 None:intergenic
TACTGTTAGAGATCATTCAT+CGG 0.623155 4_1:-55643006 Msa0557330:CDS
TACACATGAATCTTCTCTTG+AGG 0.623487 4_1:+55643396 None:intergenic
AGAGACATTCAGAAAAGATG+AGG 0.623555 4_1:-55643048 Msa0557330:CDS
TGTGTTACCTTAGGATACAA+GGG 0.624805 4_1:+55641456 None:intergenic
AACTTCAGCTACAATGGCAA+GGG 0.624923 4_1:-55642269 Msa0557330:intron
GTTTATAGAGTGATATTGGT+GGG 0.628743 4_1:-55640992 Msa0557330:CDS
AGTTTATAGAGTGATATTGG+TGG 0.632616 4_1:-55640993 Msa0557330:CDS
GTATTCATCACCTCTAAAGT+GGG 0.632654 4_1:+55643447 None:intergenic
GTTCCAAGACCAAGAAAACA+GGG 0.636643 4_1:-55643655 Msa0557330:CDS
AATAAAGAACAGGTGCCCCA+AGG 0.644833 4_1:-55643277 Msa0557330:CDS
CTACAAGAAGCTAACAAGTG+AGG 0.653858 4_1:+55641921 None:intergenic
AGGAAATTGAACAAAAGACA+GGG 0.653996 4_1:+55642419 None:intergenic
CAATTTGCAGAGAAAGTACG+AGG 0.654350 4_1:-55643087 Msa0557330:intron
TGGATCAAGGTGAAAACACA+TGG 0.655681 4_1:+55642455 None:intergenic
CCATTTAGCAGACAGAACTG+AGG 0.656929 4_1:+55641483 None:intergenic
GCTGGTGATAAGGAAGGACA+AGG 0.659987 4_1:-55640894 Msa0557330:CDS
AATTTGTCGTAGCTGTACCA+AGG 0.662023 4_1:+55641685 None:intergenic
TAGCAGACAGAACTGAGGGA+TGG 0.670382 4_1:+55641488 None:intergenic
TATCATCTAGGGAGAAATGG+AGG 0.679190 4_1:-55643805 Msa0557330:exon
CCATGACTCTGTATGGTGTG+AGG 0.687665 4_1:-55643350 Msa0557330:CDS
GTAGCTGTACCAAGGAACTG+TGG 0.688487 4_1:+55641693 None:intergenic
CTTCCCAGAGAGATTGCCAG+AGG 0.691580 4_1:-55643526 Msa0557330:CDS
TCACACCATACAGAGTCATG+GGG 0.693106 4_1:+55643352 None:intergenic
AGGCTTGGGAGTTTGCAAGG+TGG 0.698000 4_1:-55643326 Msa0557330:CDS
CTGGTGATAAGGAAGGACAA+GGG 0.707930 4_1:-55640893 Msa0557330:CDS
AAGCAGAAAAGTAGGCCTTG+GGG 0.718114 4_1:+55643262 None:intergenic
ATATGAACACATCAACAGCA+GGG 0.739860 4_1:+55643493 None:intergenic
ATGGTGGCAAAACACCAAAG+GGG 0.740329 4_1:+55641507 None:intergenic
TTCCAAGACCAAGAAAACAG+GGG 0.741930 4_1:-55643654 Msa0557330:CDS
AAATTGAACAAAAGACAGGG+AGG 0.747712 4_1:+55642422 None:intergenic
CACACCATACAGAGTCATGG+GGG 0.754927 4_1:+55643353 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAAGATGATAAAATA+TGG + chr4_1:55643144-55643163 None:intergenic 10.0%
!!! TTTTTTTGTTGAATTCATAT+AGG - chr4_1:55641311-55641330 Msa0557330:CDS 15.0%
!! AAAAAAAAAAAACATGTGTT+TGG - chr4_1:55643774-55643793 Msa0557330:CDS 15.0%
!!! AGTTTTGTATATATACACTT+TGG + chr4_1:55641844-55641863 None:intergenic 20.0%
! AGTAATACTATCTCTTGAAA+AGG + chr4_1:55641444-55641463 None:intergenic 25.0%
!! CATTTTATCTTGAATTTTGC+AGG - chr4_1:55641675-55641694 Msa0557330:CDS 25.0%
! ACTGCAAAGATTTAATCTAA+AGG + chr4_1:55642156-55642175 None:intergenic 25.0%
!! CACATGCTTTTATATGAAAA+GGG - chr4_1:55642252-55642271 Msa0557330:CDS 25.0%
!!! CTGTTCTGAGTTTTAAATTT+AGG - chr4_1:55642404-55642423 Msa0557330:CDS 25.0%
!!! TTCTGAGTTTTAAATTTAGG+AGG - chr4_1:55642407-55642426 Msa0557330:CDS 25.0%
!!! TCTGAGTTTTAAATTTAGGA+GGG - chr4_1:55642408-55642427 Msa0557330:CDS 25.0%
!! GTATAATTTTGAACTGTTTC+AGG - chr4_1:55642655-55642674 Msa0557330:intron 25.0%
! TTTAATATCTGTGTTACCTT+AGG + chr4_1:55643022-55643041 None:intergenic 25.0%
!!! TTCTTGAACATTTTTTTGAC+AGG - chr4_1:55643110-55643129 Msa0557330:intron 25.0%
!!! AACATTTTTTTGACAGGTTT+CGG - chr4_1:55643116-55643135 Msa0557330:intron 25.0%
! TGTAATGATAAAACTTGCAA+GGG + chr4_1:55643529-55643548 None:intergenic 25.0%
! TTGTAATGATAAAACTTGCA+AGG + chr4_1:55643530-55643549 None:intergenic 25.0%
!!! ATATTAAGCGTTTGTTATTG+CGG + chr4_1:55643819-55643838 None:intergenic 25.0%
! TGATGATAAGCAACATCTTT+TGG + chr4_1:55640724-55640743 None:intergenic 30.0%
! AGATGTTGCTTATCATCAAT+AGG - chr4_1:55640726-55640745 Msa0557330:intron 30.0%
!! TGATTTCTGAAGCAAAAACA+AGG + chr4_1:55640859-55640878 None:intergenic 30.0%
AAATCATTCTCTCCTTCATT+TGG - chr4_1:55640873-55640892 Msa0557330:intron 30.0%
! GAATACTGTTTTATCATCCA+TGG - chr4_1:55641036-55641055 Msa0557330:CDS 30.0%
ATGTGTATCTTTCAGATGAT+GGG - chr4_1:55641086-55641105 Msa0557330:CDS 30.0%
TACTGTTAGAGATCATTCAT+CGG - chr4_1:55641460-55641479 Msa0557330:intron 30.0%
AAACTCAAATTATTGCTGTC+AGG + chr4_1:55641549-55641568 None:intergenic 30.0%
!!! TGAGCATTGACTAATTTTTG+TGG + chr4_1:55641603-55641622 None:intergenic 30.0%
!! AGAAGATATCATTGATGATG+TGG - chr4_1:55641705-55641724 Msa0557330:CDS 30.0%
! TATACACTTTGGAAGATAGA+AGG + chr4_1:55641833-55641852 None:intergenic 30.0%
AGGAAATTGAACAAAAGACA+GGG + chr4_1:55642050-55642069 None:intergenic 30.0%
CTAATGTTGTGAAATTTCTG+AGG + chr4_1:55642070-55642089 None:intergenic 30.0%
! GCACATGCTTTTATATGAAA+AGG - chr4_1:55642251-55642270 Msa0557330:CDS 30.0%
!! ATGAAAAGGGTATCATTGTA+CGG - chr4_1:55642265-55642284 Msa0557330:intron 30.0%
CATGTTAGTTCATAACGTAA+AGG + chr4_1:55642379-55642398 None:intergenic 30.0%
!!! CTACACAAGAGTTTTTTTTC+CGG - chr4_1:55642499-55642518 Msa0557330:CDS 30.0%
!!! TACACAAGAGTTTTTTTTCC+GGG - chr4_1:55642500-55642519 Msa0557330:CDS 30.0%
ATATGAAACTGGCACTAAAT+GGG - chr4_1:55642568-55642587 Msa0557330:intron 30.0%
!! AATTTTGAACTGTTTCAGGT+AGG - chr4_1:55642659-55642678 Msa0557330:intron 30.0%
GGATTTATCTTGCATTGTAA+CGG - chr4_1:55642719-55642738 Msa0557330:CDS 30.0%
TTGAATGATGTACTAATCCA+AGG - chr4_1:55642803-55642822 Msa0557330:intron 30.0%
! ATCTGAGATTGAAGTGAAAA+CGG + chr4_1:55643052-55643071 None:intergenic 30.0%
TTACTAGAAGTCTTCTTAAC+TGG - chr4_1:55643192-55643211 Msa0557330:intron 30.0%
TCAACTACTTGCAATCTATA+TGG - chr4_1:55643264-55643283 Msa0557330:CDS 30.0%
TTGCAATCTATATGGTTGTT+TGG - chr4_1:55643272-55643291 Msa0557330:CDS 30.0%
! GGAAGTCGTATTTATCATTT+TGG + chr4_1:55643383-55643402 None:intergenic 30.0%
! AAATATGTTGATTGTGAGGA+GGG + chr4_1:55643439-55643458 None:intergenic 30.0%
! AAAATATGTTGATTGTGAGG+AGG + chr4_1:55643440-55643459 None:intergenic 30.0%
! GACAAAATATGTTGATTGTG+AGG + chr4_1:55643443-55643462 None:intergenic 30.0%
! CACAATCAACATATTTTGTC+TGG - chr4_1:55643443-55643462 Msa0557330:CDS 30.0%
! AACATATTTTGTCTGGTAGT+TGG - chr4_1:55643450-55643469 Msa0557330:CDS 30.0%
TGGAGTTTATAGAGTGATAT+TGG - chr4_1:55643470-55643489 Msa0557330:CDS 30.0%
AGTTTATAGAGTGATATTGG+TGG - chr4_1:55643473-55643492 Msa0557330:CDS 30.0%
GTTTATAGAGTGATATTGGT+GGG - chr4_1:55643474-55643493 Msa0557330:CDS 30.0%
ATAAACTACCCTATCATTGA+AGG - chr4_1:55643549-55643568 Msa0557330:CDS 30.0%
TAAACTACCCTATCATTGAA+GGG - chr4_1:55643550-55643569 Msa0557330:CDS 30.0%
! AATGCCATTTAACATGTGTT+TGG - chr4_1:55643737-55643756 Msa0557330:CDS 30.0%
TAACTGGAAGGTTATCATCT+AGG - chr4_1:55640649-55640668 Msa0557330:CDS 35.0%
AACTGGAAGGTTATCATCTA+GGG - chr4_1:55640650-55640669 Msa0557330:CDS 35.0%
GAGAAATGGAGGTAAATCAA+GGG - chr4_1:55640672-55640691 Msa0557330:intron 35.0%
! TAAGCAACATCTTTTGGACA+TGG + chr4_1:55640718-55640737 None:intergenic 35.0%
TAGGCTTCTTGTTCTATTAC+AGG - chr4_1:55640777-55640796 Msa0557330:intron 35.0%
AGGCTTCTTGTTCTATTACA+GGG - chr4_1:55640778-55640797 Msa0557330:intron 35.0%
ATATGAACACATCAACAGCA+GGG + chr4_1:55640976-55640995 None:intergenic 35.0%
! TCTAAAGTGGGTTCCTTAAT+TGG + chr4_1:55641010-55641029 None:intergenic 35.0%
AATTAAGGAACCCACTTTAG+AGG - chr4_1:55641009-55641028 Msa0557330:CDS 35.0%
!! GTATTCATCACCTCTAAAGT+GGG + chr4_1:55641022-55641041 None:intergenic 35.0%
! AGTATTCATCACCTCTAAAG+TGG + chr4_1:55641023-55641042 None:intergenic 35.0%
TACACATGAATCTTCTCTTG+AGG + chr4_1:55641073-55641092 None:intergenic 35.0%
CATGTGTATCTTTCAGATGA+TGG - chr4_1:55641085-55641104 Msa0557330:CDS 35.0%
! GAAGGTACAGAATAAAGAAC+AGG - chr4_1:55641179-55641198 Msa0557330:CDS 35.0%
!! GTGATGATAATGATTTTGCC+AGG - chr4_1:55641233-55641252 Msa0557330:CDS 35.0%
AGAGACATTCAGAAAAGATG+AGG - chr4_1:55641418-55641437 Msa0557330:intron 35.0%
TGTCTAGTATATAGTGCACA+CGG + chr4_1:55641655-55641674 None:intergenic 35.0%
! CAATCTAGAACTAGGATGTA+GGG + chr4_1:55641953-55641972 None:intergenic 35.0%
! ACAATCTAGAACTAGGATGT+AGG + chr4_1:55641954-55641973 None:intergenic 35.0%
! ACATGTCACAATCTAGAACT+AGG + chr4_1:55641961-55641980 None:intergenic 35.0%
AGGATGATATCTTTGGATCA+AGG + chr4_1:55642027-55642046 None:intergenic 35.0%
AAATTGAACAAAAGACAGGG+AGG + chr4_1:55642047-55642066 None:intergenic 35.0%
GAGGAAATTGAACAAAAGAC+AGG + chr4_1:55642051-55642070 None:intergenic 35.0%
TTGAACAACTTCAGCTACAA+TGG - chr4_1:55642191-55642210 Msa0557330:CDS 35.0%
! TGTTTTACAAGCAACCTTGT+GGG + chr4_1:55642315-55642334 None:intergenic 35.0%
! CTGCAACTTCGAGAATATTT+TGG - chr4_1:55642440-55642459 Msa0557330:CDS 35.0%
GCTTCTTGTAGATATGAAAC+TGG - chr4_1:55642557-55642576 Msa0557330:intron 35.0%
GATATGAAACTGGCACTAAA+TGG - chr4_1:55642567-55642586 Msa0557330:intron 35.0%
TATGAAACTGGCACTAAATG+GGG - chr4_1:55642569-55642588 Msa0557330:intron 35.0%
AATGCAAGATAAATCCAGTC+AGG + chr4_1:55642715-55642734 None:intergenic 35.0%
! TTATCTTGCATTGTAACGGA+TGG - chr4_1:55642723-55642742 Msa0557330:CDS 35.0%
!! TACTCTGGTTTGTTCGAAAA+CGG - chr4_1:55642836-55642855 Msa0557330:intron 35.0%
AAAGGGGCAAACAATAAAGA+GGG + chr4_1:55642946-55642965 None:intergenic 35.0%
TGTGTTACCTTAGGATACAA+GGG + chr4_1:55643013-55643032 None:intergenic 35.0%
! TCATCCTCTGCTTTATTAGT+AGG + chr4_1:55643342-55643361 None:intergenic 35.0%
CTATAAAAATGTTCGACGCT+CGG + chr4_1:55643404-55643423 None:intergenic 35.0%
TTGGGACAAAATGTTCATAC+AGG - chr4_1:55643500-55643519 Msa0557330:CDS 35.0%
GGTTCCAAACACATGTTAAA+TGG + chr4_1:55643744-55643763 None:intergenic 35.0%
TATTGCGGTCATAAAACATC+TGG + chr4_1:55643804-55643823 None:intergenic 35.0%
GGTTATCATCTAGGGAGAAA+TGG - chr4_1:55640658-55640677 Msa0557330:CDS 40.0%
TATCATCTAGGGAGAAATGG+AGG - chr4_1:55640661-55640680 Msa0557330:CDS 40.0%
GGAGAAATGGAGGTAAATCA+AGG - chr4_1:55640671-55640690 Msa0557330:intron 40.0%
TGTTCCAAGACCAAGAAAAC+AGG - chr4_1:55640810-55640829 Msa0557330:intron 40.0%
GTTCCAAGACCAAGAAAACA+GGG - chr4_1:55640811-55640830 Msa0557330:intron 40.0%
TTCCAAGACCAAGAAAACAG+GGG - chr4_1:55640812-55640831 Msa0557330:intron 40.0%
TGGGAAGACATATCGTGAAA+CGG + chr4_1:55640927-55640946 None:intergenic 40.0%
CATATGAACACATCAACAGC+AGG + chr4_1:55640977-55640996 None:intergenic 40.0%
ATGCACTGCAGATCCAATTA+AGG - chr4_1:55640994-55641013 Msa0557330:CDS 40.0%
! TGTTTTATCATCCATGGCAC+TGG - chr4_1:55641042-55641061 Msa0557330:CDS 40.0%
ATTCTGTACCTTCTGCAGAA+GGG + chr4_1:55641172-55641191 None:intergenic 40.0%
TATTCTGTACCTTCTGCAGA+AGG + chr4_1:55641173-55641192 None:intergenic 40.0%
AAAGCAGAAAAGTAGGCCTT+GGG + chr4_1:55641208-55641227 None:intergenic 40.0%
ACTCTCCAAAGCAGAAAAGT+AGG + chr4_1:55641215-55641234 None:intergenic 40.0%
GGCAGAGAAGCAAAAGATTA+AGG - chr4_1:55641270-55641289 Msa0557330:CDS 40.0%
! CAATTTGCAGAGAAAGTACG+AGG - chr4_1:55641379-55641398 Msa0557330:intron 40.0%
AGATCATTCATCGGTCATTG+AGG - chr4_1:55641469-55641488 Msa0557330:CDS 40.0%
CTCGAAACATAGACAAGTTG+AGG + chr4_1:55641745-55641764 None:intergenic 40.0%
! CACTTTGGAAGATAGAAGGA+TGG + chr4_1:55641829-55641848 None:intergenic 40.0%
TGGATCAAGGTGAAAACACA+TGG + chr4_1:55642014-55642033 None:intergenic 40.0%
AACTTCAGCTACAATGGCAA+GGG - chr4_1:55642197-55642216 Msa0557330:CDS 40.0%
TACGGAAATCAAGCGAATGA+AGG - chr4_1:55642283-55642302 Msa0557330:intron 40.0%
!! AATGAAGGTATTGACCCACA+AGG - chr4_1:55642298-55642317 Msa0557330:intron 40.0%
! GTGTTTTACAAGCAACCTTG+TGG + chr4_1:55642316-55642335 None:intergenic 40.0%
AATATTCTCGAAGTTGCAGC+AGG + chr4_1:55642439-55642458 None:intergenic 40.0%
!!! CAAGAGTTTTTTTTCCGGGA+CGG - chr4_1:55642504-55642523 Msa0557330:CDS 40.0%
CTACAAGAAGCTAACAAGTG+AGG + chr4_1:55642548-55642567 None:intergenic 40.0%
!! GCATTGTAACGGATGGAATT+CGG - chr4_1:55642730-55642749 Msa0557330:CDS 40.0%
AATTTGTCGTAGCTGTACCA+AGG + chr4_1:55642784-55642803 None:intergenic 40.0%
! TACTAATCCAAGGCACTAGA+TGG - chr4_1:55642813-55642832 Msa0557330:intron 40.0%
!! ACTCTGGTTTGTTCGAAAAC+GGG - chr4_1:55642837-55642856 Msa0557330:intron 40.0%
! AAGTTTTGCCCCCTCATATA+TGG - chr4_1:55642866-55642885 Msa0557330:intron 40.0%
! AGTTTTGCCCCCTCATATAT+GGG - chr4_1:55642867-55642886 Msa0557330:intron 40.0%
TTAAAGGCCCATATATGAGG+GGG + chr4_1:55642877-55642896 None:intergenic 40.0%
CTTAAAGGCCCATATATGAG+GGG + chr4_1:55642878-55642897 None:intergenic 40.0%
CCTTAAAGGCCCATATATGA+GGG + chr4_1:55642879-55642898 None:intergenic 40.0%
TCCTTAAAGGCCCATATATG+AGG + chr4_1:55642880-55642899 None:intergenic 40.0%
TGGAGTAGTGACATCCTTAA+AGG + chr4_1:55642893-55642912 None:intergenic 40.0%
CAAAGGGGCAAACAATAAAG+AGG + chr4_1:55642947-55642966 None:intergenic 40.0%
CTCTTTATTGTTTGCCCCTT+TGG - chr4_1:55642945-55642964 Msa0557330:intron 40.0%
CATTTAGCAGACAGAACTGA+GGG + chr4_1:55642985-55643004 None:intergenic 40.0%
TGGAATACCCTTGTATCCTA+AGG - chr4_1:55643003-55643022 Msa0557330:CDS 40.0%
CTGTGTTACCTTAGGATACA+AGG + chr4_1:55643014-55643033 None:intergenic 40.0%
GAGATTGAAGTGAAAACGGT+AGG + chr4_1:55643048-55643067 None:intergenic 40.0%
CTAGAAGTCTTCTTAACTGG+AGG - chr4_1:55643195-55643214 Msa0557330:intron 40.0%
GATGCTTTACTGAAGAAAGC+TGG - chr4_1:55643294-55643313 Msa0557330:CDS 40.0%
CTTGCCTACTAATAAAGCAG+AGG - chr4_1:55643335-55643354 Msa0557330:CDS 40.0%
! AGTGATATTGGTGGGTGATT+GGG - chr4_1:55643482-55643501 Msa0557330:CDS 40.0%
! CAACATCTTTTGGACATGGC+AGG + chr4_1:55640714-55640733 None:intergenic 45.0%
ACACATGCTCCTTCATTCCA+TGG - chr4_1:55640751-55640770 Msa0557330:intron 45.0%
CTCCTTCATTCCATGGCATT+AGG - chr4_1:55640758-55640777 Msa0557330:intron 45.0%
AGCCTAATGCCATGGAATGA+AGG + chr4_1:55640763-55640782 None:intergenic 45.0%
GAACAAGAAGCCTAATGCCA+TGG + chr4_1:55640771-55640790 None:intergenic 45.0%
! TTCCCCTGTTTTCTTGGTCT+TGG + chr4_1:55640817-55640836 None:intergenic 45.0%
! AATGGCTTCCCCTGTTTTCT+TGG + chr4_1:55640823-55640842 None:intergenic 45.0%
GAAGCAAAAACAAGGAGCCA+TGG + chr4_1:55640851-55640870 None:intergenic 45.0%
! CTCTCCTTCATTTGGTTCCT+TGG - chr4_1:55640881-55640900 Msa0557330:CDS 45.0%
TTGGCCAAGGAACCAAATGA+AGG + chr4_1:55640888-55640907 None:intergenic 45.0%
GGGAAGACATATCGTGAAAC+GGG + chr4_1:55640926-55640945 None:intergenic 45.0%
TCACACCATACAGAGTCATG+GGG + chr4_1:55641117-55641136 None:intergenic 45.0%
CTCACACCATACAGAGTCAT+GGG + chr4_1:55641118-55641137 None:intergenic 45.0%
AATAAAGAACAGGTGCCCCA+AGG - chr4_1:55641189-55641208 Msa0557330:CDS 45.0%
AAGCAGAAAAGTAGGCCTTG+GGG + chr4_1:55641207-55641226 None:intergenic 45.0%
CAAAGCAGAAAAGTAGGCCT+TGG + chr4_1:55641209-55641228 None:intergenic 45.0%
!! CAAGGCCTACTTTTCTGCTT+TGG - chr4_1:55641207-55641226 Msa0557330:CDS 45.0%
TGCCAGGAGTAGTGTTTACA+TGG - chr4_1:55641249-55641268 Msa0557330:CDS 45.0%
TGCCATGTAAACACTACTCC+TGG + chr4_1:55641254-55641273 None:intergenic 45.0%
CTAGTATATAGTGCACACGG+CGG + chr4_1:55641652-55641671 None:intergenic 45.0%
TGGCCATACAAGGACATTGA+GGG + chr4_1:55641809-55641828 None:intergenic 45.0%
ATGGCCATACAAGGACATTG+AGG + chr4_1:55641810-55641829 None:intergenic 45.0%
GATAGAAGGATGGCCATACA+AGG + chr4_1:55641819-55641838 None:intergenic 45.0%
ATGGCATATCGAGCTGAAGT+TGG + chr4_1:55641995-55642014 None:intergenic 45.0%
GACAGGGAGGATGATATCTT+TGG + chr4_1:55642034-55642053 None:intergenic 45.0%
CAACTTCAGCTACAATGGCA+AGG - chr4_1:55642196-55642215 Msa0557330:CDS 45.0%
CTTAAGGGACCTGTATTGTC+AGG - chr4_1:55642229-55642248 Msa0557330:CDS 45.0%
AAGCATGTGCCTGACAATAC+AGG + chr4_1:55642241-55642260 None:intergenic 45.0%
GTAGTCGAAGATTTCCTGAC+TGG - chr4_1:55642698-55642717 Msa0557330:CDS 45.0%
CCCTCATATATGGGCCTTTA+AGG - chr4_1:55642876-55642895 Msa0557330:intron 45.0%
GCTCTGCAAAACACAGACTT+TGG + chr4_1:55642913-55642932 None:intergenic 45.0%
ATGGTGGCAAAACACCAAAG+GGG + chr4_1:55642962-55642981 None:intergenic 45.0%
! GATGGTGGCAAAACACCAAA+GGG + chr4_1:55642963-55642982 None:intergenic 45.0%
CCATTTAGCAGACAGAACTG+AGG + chr4_1:55642986-55643005 None:intergenic 45.0%
CCTCAGTTCTGTCTGCTAAA+TGG - chr4_1:55642983-55643002 Msa0557330:intron 45.0%
CTGGAGGAACACTACATAAG+TGG - chr4_1:55643211-55643230 Msa0557330:CDS 45.0%
GGATCAATGAGCAGAGAATC+TGG - chr4_1:55643232-55643251 Msa0557330:CDS 45.0%
! GAGTGATATTGGTGGGTGAT+TGG - chr4_1:55643481-55643500 Msa0557330:CDS 45.0%
TCACCAGCCCTTCAATGATA+GGG + chr4_1:55643560-55643579 None:intergenic 45.0%
ATCACCAGCCCTTCAATGAT+AGG + chr4_1:55643561-55643580 None:intergenic 45.0%
! TCATTGAAGGGCTGGTGATA+AGG - chr4_1:55643562-55643581 Msa0557330:CDS 45.0%
CTGGTGATAAGGAAGGACAA+GGG - chr4_1:55643573-55643592 Msa0557330:CDS 45.0%
!!! TTTTTTTTTTTTTTTTTGAA+GGG + chr4_1:55643765-55643784 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTTTGA+AGG + chr4_1:55643766-55643785 None:intergenic 5.0%
!! TGGACATGGCAGGTATTGAG+AGG + chr4_1:55640704-55640723 None:intergenic 50.0%
CAAGGAGCCATGGCAACAAA+TGG + chr4_1:55640841-55640860 None:intergenic 50.0%
CATCCTCTGGCAATCTCTCT+GGG + chr4_1:55640946-55640965 None:intergenic 50.0%
TCATCCTCTGGCAATCTCTC+TGG + chr4_1:55640947-55640966 None:intergenic 50.0%
TTGAGGATAGTCCAGTGCCA+TGG + chr4_1:55641056-55641075 None:intergenic 50.0%
TGTTCCCCCATGACTCTGTA+TGG - chr4_1:55641109-55641128 Msa0557330:CDS 50.0%
CACACCATACAGAGTCATGG+GGG + chr4_1:55641116-55641135 None:intergenic 50.0%
CCTCACACCATACAGAGTCA+TGG + chr4_1:55641119-55641138 None:intergenic 50.0%
CCATGACTCTGTATGGTGTG+AGG - chr4_1:55641116-55641135 Msa0557330:CDS 50.0%
GACTCTGTATGGTGTGAGGA+AGG - chr4_1:55641120-55641139 Msa0557330:CDS 50.0%
TGTATGGTGTGAGGAAGGCT+TGG - chr4_1:55641125-55641144 Msa0557330:CDS 50.0%
GTATGGTGTGAGGAAGGCTT+GGG - chr4_1:55641126-55641145 Msa0557330:CDS 50.0%
AGTCCCCACCATTTCAAAGC+TGG - chr4_1:55641781-55641800 Msa0557330:CDS 50.0%
!! GCTCCAGCTTTGAAATGGTG+GGG + chr4_1:55641787-55641806 None:intergenic 50.0%
!! GGCTCCAGCTTTGAAATGGT+GGG + chr4_1:55641788-55641807 None:intergenic 50.0%
!! TGAGGGCTCCAGCTTTGAAA+TGG + chr4_1:55641792-55641811 None:intergenic 50.0%
GAGCCCTCAATGTCCTTGTA+TGG - chr4_1:55641803-55641822 Msa0557330:intron 50.0%
TCAGCTACAATGGCAAGGGA+TGG - chr4_1:55642201-55642220 Msa0557330:CDS 50.0%
CTACAATGGCAAGGGATGGA+CGG - chr4_1:55642205-55642224 Msa0557330:CDS 50.0%
TACAATGGCAAGGGATGGAC+GGG - chr4_1:55642206-55642225 Msa0557330:CDS 50.0%
TCGAGCAATGTATTCCGTCC+CGG + chr4_1:55642521-55642540 None:intergenic 50.0%
! CGGTTTTCTGCGAACCATCT+AGG - chr4_1:55642750-55642769 Msa0557330:CDS 50.0%
GTAGCTGTACCAAGGAACTG+TGG + chr4_1:55642776-55642795 None:intergenic 50.0%
! CAGAGTACCATCTAGTGCCT+TGG + chr4_1:55642823-55642842 None:intergenic 50.0%
! CAAGGCACTAGATGGTACTC+TGG - chr4_1:55642821-55642840 Msa0557330:intron 50.0%
! GGATGGTGGCAAAACACCAA+AGG + chr4_1:55642964-55642983 None:intergenic 50.0%
TAGCAGACAGAACTGAGGGA+TGG + chr4_1:55642981-55643000 None:intergenic 50.0%
ATTGTGAGGAGGGCAAGCAT+TGG + chr4_1:55643429-55643448 None:intergenic 50.0%
CTACCCTATCATTGAAGGGC+TGG - chr4_1:55643554-55643573 Msa0557330:CDS 50.0%
! TGAAGGGCTGGTGATAAGGA+AGG - chr4_1:55643566-55643585 Msa0557330:CDS 50.0%
GCTGGTGATAAGGAAGGACA+AGG - chr4_1:55643572-55643591 Msa0557330:CDS 50.0%
CAAGGGACGCATTTCACAGT+CGG - chr4_1:55643590-55643609 Msa0557330:CDS 50.0%
! GGGGAAGCCATTTGTTGCCA+TGG - chr4_1:55640831-55640850 Msa0557330:intron 55.0%
TCCTTGGCCAAGCTTATCGC+TGG - chr4_1:55640897-55640916 Msa0557330:CDS 55.0%
CTTCCCAGAGAGATTGCCAG+AGG - chr4_1:55640940-55640959 Msa0557330:CDS 55.0%
GGAAGGCTTGGGAGTTTGCA+AGG - chr4_1:55641137-55641156 Msa0557330:CDS 55.0%
AGGCTTGGGAGTTTGCAAGG+TGG - chr4_1:55641140-55641159 Msa0557330:CDS 55.0%
CTTGGGAGTTTGCAAGGTGG+TGG - chr4_1:55641143-55641162 Msa0557330:CDS 55.0%
!! GGGCTCCAGCTTTGAAATGG+TGG + chr4_1:55641789-55641808 None:intergenic 55.0%
! CAAGGGATGGACGGGCTTAA+GGG - chr4_1:55642214-55642233 Msa0557330:CDS 55.0%
CCAAGGAACTGTGGCCTAGA+TGG + chr4_1:55642767-55642786 None:intergenic 55.0%
CCATCTAGGCCACAGTTCCT+TGG - chr4_1:55642764-55642783 Msa0557330:CDS 55.0%
CAGACAGAACTGAGGGATGG+TGG + chr4_1:55642978-55642997 None:intergenic 55.0%
GCCAGCGATAAGCTTGGCCA+AGG + chr4_1:55640901-55640920 None:intergenic 60.0%
GCAGGGAGCTTGTCATCCTC+TGG + chr4_1:55640959-55640978 None:intergenic 60.0%
GGTGGCTTCCCTTCTGCAGA+AGG - chr4_1:55641161-55641180 Msa0557330:CDS 60.0%
! GCAAGGGATGGACGGGCTTA+AGG - chr4_1:55642213-55642232 Msa0557330:CDS 60.0%
CGGGACGCCAGCGATAAGCT+TGG + chr4_1:55640907-55640926 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 55640648 55643840 55640648 ID=Msa0557330;Name=Msa0557330
chr4_1 mRNA 55640648 55643840 55640648 ID=Msa0557330-mRNA-1;Parent=Msa0557330;Name=Msa0557330-mRNA-1;_AED=0.12;_eAED=0.12;_QI=29|0.77|0.6|0.9|1|1|10|0|700
chr4_1 exon 55640648 55640683 55640648 ID=Msa0557330-mRNA-1:exon:16668;Parent=Msa0557330-mRNA-1
chr4_1 exon 55640877 55641356 55640877 ID=Msa0557330-mRNA-1:exon:16667;Parent=Msa0557330-mRNA-1
chr4_1 exon 55641464 55641558 55641464 ID=Msa0557330-mRNA-1:exon:16666;Parent=Msa0557330-mRNA-1
chr4_1 exon 55641646 55641811 55641646 ID=Msa0557330-mRNA-1:exon:16665;Parent=Msa0557330-mRNA-1
chr4_1 exon 55641890 55642062 55641890 ID=Msa0557330-mRNA-1:exon:16664;Parent=Msa0557330-mRNA-1
chr4_1 exon 55642184 55642283 55642184 ID=Msa0557330-mRNA-1:exon:16663;Parent=Msa0557330-mRNA-1
chr4_1 exon 55642356 55642568 55642356 ID=Msa0557330-mRNA-1:exon:16662;Parent=Msa0557330-mRNA-1
chr4_1 exon 55642669 55642791 55642669 ID=Msa0557330-mRNA-1:exon:16661;Parent=Msa0557330-mRNA-1
chr4_1 exon 55642998 55643099 55642998 ID=Msa0557330-mRNA-1:exon:16660;Parent=Msa0557330-mRNA-1
chr4_1 exon 55643197 55643840 55643197 ID=Msa0557330-mRNA-1:exon:16659;Parent=Msa0557330-mRNA-1
chr4_1 five_prime_UTR 55643812 55643840 55643812 ID=Msa0557330-mRNA-1:five_prime_utr;Parent=Msa0557330-mRNA-1
chr4_1 CDS 55643197 55643811 55643197 ID=Msa0557330-mRNA-1:cds;Parent=Msa0557330-mRNA-1
chr4_1 CDS 55642998 55643099 55642998 ID=Msa0557330-mRNA-1:cds;Parent=Msa0557330-mRNA-1
chr4_1 CDS 55642669 55642791 55642669 ID=Msa0557330-mRNA-1:cds;Parent=Msa0557330-mRNA-1
chr4_1 CDS 55642356 55642568 55642356 ID=Msa0557330-mRNA-1:cds;Parent=Msa0557330-mRNA-1
chr4_1 CDS 55642184 55642283 55642184 ID=Msa0557330-mRNA-1:cds;Parent=Msa0557330-mRNA-1
chr4_1 CDS 55641890 55642062 55641890 ID=Msa0557330-mRNA-1:cds;Parent=Msa0557330-mRNA-1
chr4_1 CDS 55641646 55641811 55641646 ID=Msa0557330-mRNA-1:cds;Parent=Msa0557330-mRNA-1
chr4_1 CDS 55641464 55641558 55641464 ID=Msa0557330-mRNA-1:cds;Parent=Msa0557330-mRNA-1
chr4_1 CDS 55640877 55641356 55640877 ID=Msa0557330-mRNA-1:cds;Parent=Msa0557330-mRNA-1
chr4_1 CDS 55640648 55640683 55640648 ID=Msa0557330-mRNA-1:cds;Parent=Msa0557330-mRNA-1
Gene Sequence

>Msa0557330

ATGGAGGTAAATCAAGGGACTCTTCCTCTCAATACCTGCCATGTCCAAAAGATGTTGCTTATCATCAATAGGTTACACATGCTCCTTCATTCCATGGCATTAGGCTTCTTGTTCTATTACAGGGTGTGCTTTCTGTTCCAAGACCAAGAAAACAGGGGAAGCCATTTGTTGCCATGGCTCCTTGTTTTTGCTTCAGAAATCATTCTCTCCTTCATTTGGTTCCTTGGCCAAGCTTATCGCTGGCGTCCCGTTTCACGATATGTCTTCCCAGAGAGATTGCCAGAGGATGACAAGCTCCCTGCTGTTGATGTGTTCATATGCACTGCAGATCCAATTAAGGAACCCACTTTAGAGGTGATGAATACTGTTTTATCATCCATGGCACTGGACTATCCTCAAGAGAAGATTCATGTGTATCTTTCAGATGATGGGTGTTCCCCCATGACTCTGTATGGTGTGAGGAAGGCTTGGGAGTTTGCAAGGTGGTGGCTTCCCTTCTGCAGAAGGTACAGAATAAAGAACAGGTGCCCCAAGGCCTACTTTTCTGCTTTGGAGAGTGATGATAATGATTTTGCCAGGAGTAGTGTTTACATGGCAGAGAAGCAAAAGATTAAGAGAAAGTACGAGGCTTTTAAAGAAGAGATAGAGACATTCAGAAAAGATGAGGCCTTTTCAAGAGATAGTATTACTGTTAGAGATCATTCATCGGTCATTGAGGTGATGCAAGAAGATATCATTGATGATGTGGATAATGTCAAAATGCCTCAACTTGTCTATGTTTCGAGAGAGAGAAAGTCTTCTAGTCCCCACCATTTCAAAGCTGGAGCCCTCAATGTCCTTCTTTGTGTATCTGCTGTGATGAGTAATTCTCCCTACATCCTAGTTCTAGATTGTGACATGTTCTGCAACGATCCAACTTCAGCTCGATATGCCATGTGTTTTCACCTTGATCCAAAGATATCATCCTCCCTGTCTTTTGTTCAATTTCCTCAGAAATTTCACAACATTAGCAAGAAAGACATCTATGACAGTCAGCTGAGATCATTATTTACTCTACAATGGCAAGGGATGGACGGGCTTAAGGGACCTGTATTGTCAGGCACATGCTTTTATATGAAAAGGGTATCATTGTACGGAAATCAAGCGAATGAAGGAGGGACTGACCTGCTGCAACTTCGAGAATATTTTGGTTCATCGAATGAATTCATCAAATCACTTACTCAAAACTACACAAGAGTTTTTTTTCCGGGACGGAATACATTGCTCGAAGAACCTCACTTGTTAGCTTCTTGTAGATATGAAACTGGCACTAAATGGGGACAAGATGTAGGTTTCTTATACGATAGTGTAGTCGAAGATTTCCTGACTGGATTTATCTTGCATTGTAACGGATGGAATTCGGTTTTCTGCGAACCATCTAGGCCACAGTTCCTTGGTACAGCTACGACAAATTTGAATGATGTACTAATCCAAGGCACTAGATGGTACTCTGAGCTCACATATTTCCCTCTTTATTGTTTGCCCCTTTGGTGTTTTGCCACCATCCCTCAGTTCTGTCTGCTAAATGGAATACCCTTGTATCCTAAGGTTTCGGATCCATATTTTATCATCTTTTTATTCATATTTTTATCATCTCTTTCAAAACATTTACTAGAAGTCTTCTTAACTGGAGGAACACTACATAAGTGGATCAATGAGCAGAGAATCTGGATGATGAAATCAACTACTTGCAATCTATATGGTTGTTTGGATGCTTTACTGAAGAAAGCTGGAATAAGACAAGCTAGTTTCTTGCCTACTAATAAAGCAGAGGATGATGAACAAACTCTGCTATACCAAAATGATAAATACGACTTCCGAGCGTCGAACATTTTTATAGTTCCAATGCTTGCCCTCCTCACAATCAACATATTTTGTCTGGTAGTTGGAGTTTATAGAGTGATATTGGTGGGTGATTGGGACAAAATGTTCATACAGGTTGCCCTTGCAAGTTTTATCATTACAATAAACTACCCTATCATTGAAGGGCTGGTGATAAGGAAGGACAAGGGACGCATTTCACAGTCGATGTTTTATGACCGCAATAACAAACGCTTAATATAG
Protein sequence

>Msa0557330

MEVNQGTLPLNTCHVQKMLLIINRLHMLLHSMALGFLFYYRVCFLFQDQENRGSHLLPWLLVFASEIILSFIWFLGQAYRWRPVSRYVFPERLPEDDKLPAVDVFICTADPIKEPTLEVMNTVLSSMALDYPQEKIHVYLSDDGCSPMTLYGVRKAWEFARWWLPFCRRYRIKNRCPKAYFSALESDDNDFARSSVYMAEKQKIKRKYEAFKEEIETFRKDEAFSRDSITVRDHSSVIEVMQEDIIDDVDNVKMPQLVYVSRERKSSSPHHFKAGALNVLLCVSAVMSNSPYILVLDCDMFCNDPTSARYAMCFHLDPKISSSLSFVQFPQKFHNISKKDIYDSQLRSLFTLQWQGMDGLKGPVLSGTCFYMKRVSLYGNQANEGGTDLLQLREYFGSSNEFIKSLTQNYTRVFFPGRNTLLEEPHLLASCRYETGTKWGQDVGFLYDSVVEDFLTGFILHCNGWNSVFCEPSRPQFLGTATTNLNDVLIQGTRWYSELTYFPLYCLPLWCFATIPQFCLLNGIPLYPKVSDPYFIIFLFIFLSSLSKHLLEVFLTGGTLHKWINEQRIWMMKSTTCNLYGCLDALLKKAGIRQASFLPTNKAEDDEQTLLYQNDKYDFRASNIFIVPMLALLTINIFCLVVGVYRVILVGDWDKMFIQVALASFIITINYPIIEGLVIRKDKGRISQSMFYDRNNKRLI*