Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558740 | PKI34370.1 | 74.545 | 110 | 25 | 2 | 127 | 236 | 72 | 178 | 7.21e-41 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558740 | sp|Q10NY2|TPR3_ORYSJ | 73.394 | 109 | 26 | 2 | 127 | 235 | 72 | 177 | 2.59e-38 | 146 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558740 | A0A2I0HSB2 | 74.545 | 110 | 25 | 2 | 127 | 236 | 72 | 178 | 3.44e-41 | 149 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0558740 | TF | GRAS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0262510 | Msa0558740 | 0.803199 | 3.906731e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558740 | MtrunA17_Chr2g0328391 | 89.024 | 82 | 9 | 0 | 1 | 82 | 268 | 349 | 8.18e-41 | 149 |
| Msa0558740 | MtrunA17_Chr4g0003011 | 75.229 | 109 | 24 | 2 | 127 | 235 | 72 | 177 | 1.20e-40 | 149 |
| Msa0558740 | MtrunA17_Chr2g0333311 | 74.312 | 109 | 25 | 2 | 127 | 235 | 72 | 177 | 4.54e-40 | 148 |
| Msa0558740 | MtrunA17_Chr4g0064101 | 69.725 | 109 | 30 | 2 | 127 | 235 | 72 | 177 | 1.72e-37 | 140 |
| Msa0558740 | MtrunA17_Chr7g0271991 | 82.051 | 78 | 14 | 0 | 158 | 235 | 100 | 177 | 9.87e-35 | 132 |
| Msa0558740 | MtrunA17_Chr4g0067791 | 72.632 | 95 | 25 | 1 | 142 | 235 | 83 | 177 | 1.24e-34 | 132 |
| Msa0558740 | MtrunA17_Chr1g0192431 | 80.769 | 78 | 15 | 0 | 158 | 235 | 100 | 177 | 1.82e-34 | 132 |
| Msa0558740 | MtrunA17_Chr4g0031711 | 53.125 | 96 | 35 | 2 | 11 | 96 | 340 | 435 | 2.38e-24 | 102 |
| Msa0558740 | MtrunA17_Chr4g0031721 | 56.790 | 81 | 35 | 0 | 1 | 81 | 285 | 365 | 1.23e-22 | 97.4 |
| Msa0558740 | MtrunA17_Chr4g0031701 | 60.000 | 70 | 28 | 0 | 13 | 82 | 235 | 304 | 5.22e-21 | 92.4 |
| Msa0558740 | MtrunA17_Chr7g0238891 | 61.765 | 68 | 26 | 0 | 14 | 81 | 354 | 421 | 6.90e-21 | 92.4 |
| Msa0558740 | MtrunA17_Chr4g0031731 | 58.571 | 70 | 29 | 0 | 13 | 82 | 235 | 304 | 2.50e-20 | 90.5 |
| Msa0558740 | MtrunA17_Chr1g0149531 | 47.500 | 80 | 42 | 0 | 157 | 236 | 33 | 112 | 2.17e-18 | 79.0 |
| Msa0558740 | MtrunA17_Chr2g0295261 | 42.574 | 101 | 57 | 1 | 136 | 235 | 8 | 108 | 2.34e-18 | 81.6 |
| Msa0558740 | MtrunA17_Chr2g0310451 | 42.105 | 95 | 54 | 1 | 142 | 235 | 59 | 153 | 3.41e-18 | 81.6 |
| Msa0558740 | MtrunA17_Chr2g0328381 | 49.367 | 79 | 40 | 0 | 3 | 81 | 246 | 324 | 2.90e-17 | 81.6 |
| Msa0558740 | MtrunA17_Chr2g0328361 | 53.125 | 64 | 30 | 0 | 18 | 81 | 260 | 323 | 1.25e-16 | 79.7 |
| Msa0558740 | MtrunA17_Chr2g0328341 | 55.556 | 63 | 25 | 1 | 22 | 81 | 259 | 321 | 1.75e-15 | 76.3 |
| Msa0558740 | MtrunA17_Chr2g0295291 | 47.500 | 80 | 30 | 1 | 157 | 236 | 34 | 101 | 4.13e-15 | 69.7 |
| Msa0558740 | MtrunA17_Chr2g0328401 | 40.741 | 108 | 61 | 2 | 12 | 116 | 268 | 375 | 1.07e-14 | 73.9 |
| Msa0558740 | MtrunA17_Chr4g0031741 | 58.929 | 56 | 23 | 0 | 26 | 81 | 278 | 333 | 2.69e-14 | 72.8 |
| Msa0558740 | MtrunA17_Chr2g0328411 | 36.434 | 129 | 70 | 4 | 12 | 132 | 262 | 386 | 9.52e-14 | 71.2 |
| Msa0558740 | MtrunA17_Chr2g0328431 | 35.659 | 129 | 71 | 3 | 12 | 132 | 262 | 386 | 1.38e-13 | 70.5 |
| Msa0558740 | MtrunA17_Chr1g0153401 | 40.506 | 79 | 47 | 0 | 158 | 236 | 102 | 180 | 3.08e-12 | 63.9 |
| Msa0558740 | MtrunA17_Chr2g0278931 | 75.676 | 37 | 9 | 0 | 243 | 279 | 280 | 316 | 1.21e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558740 | AT1G15750.3 | 89.873 | 79 | 8 | 0 | 157 | 235 | 99 | 177 | 5.41e-39 | 145 |
| Msa0558740 | AT1G15750.1 | 89.873 | 79 | 8 | 0 | 157 | 235 | 99 | 177 | 5.41e-39 | 145 |
| Msa0558740 | AT1G15750.2 | 89.873 | 79 | 8 | 0 | 157 | 235 | 99 | 177 | 5.41e-39 | 145 |
| Msa0558740 | AT1G15750.4 | 89.873 | 79 | 8 | 0 | 157 | 235 | 99 | 177 | 5.41e-39 | 145 |
| Msa0558740 | AT1G80490.3 | 88.608 | 79 | 9 | 0 | 157 | 235 | 99 | 177 | 3.30e-38 | 143 |
| Msa0558740 | AT1G80490.2 | 88.608 | 79 | 9 | 0 | 157 | 235 | 99 | 177 | 3.30e-38 | 143 |
| Msa0558740 | AT1G80490.1 | 88.608 | 79 | 9 | 0 | 157 | 235 | 99 | 177 | 3.56e-38 | 143 |
| Msa0558740 | AT3G15880.3 | 84.810 | 79 | 12 | 0 | 157 | 235 | 99 | 177 | 4.48e-36 | 137 |
| Msa0558740 | AT3G15880.2 | 84.810 | 79 | 12 | 0 | 157 | 235 | 99 | 177 | 4.54e-36 | 137 |
| Msa0558740 | AT3G15880.1 | 84.810 | 79 | 12 | 0 | 157 | 235 | 99 | 177 | 4.85e-36 | 137 |
| Msa0558740 | AT3G15880.4 | 84.810 | 79 | 12 | 0 | 157 | 235 | 99 | 177 | 4.85e-36 | 137 |
| Msa0558740 | AT3G16830.1 | 67.890 | 109 | 32 | 2 | 127 | 235 | 72 | 177 | 5.93e-35 | 134 |
| Msa0558740 | AT5G27030.1 | 78.481 | 79 | 17 | 0 | 157 | 235 | 99 | 177 | 4.57e-34 | 131 |
| Msa0558740 | AT5G27030.2 | 78.481 | 79 | 17 | 0 | 157 | 235 | 99 | 177 | 4.73e-34 | 131 |
| Msa0558740 | AT1G07530.1 | 52.564 | 78 | 30 | 1 | 11 | 81 | 368 | 445 | 3.48e-18 | 84.7 |
| Msa0558740 | AT1G07520.2 | 58.824 | 68 | 25 | 1 | 14 | 81 | 139 | 203 | 7.37e-17 | 80.5 |
| Msa0558740 | AT1G07520.4 | 58.824 | 68 | 25 | 1 | 14 | 81 | 139 | 203 | 7.37e-17 | 80.5 |
| Msa0558740 | AT1G07520.1 | 58.824 | 68 | 25 | 1 | 14 | 81 | 303 | 367 | 8.10e-17 | 80.5 |
| Msa0558740 | AT1G07520.3 | 58.824 | 68 | 25 | 1 | 14 | 81 | 304 | 368 | 8.11e-17 | 80.5 |
| Msa0558740 | AT2G37650.1 | 59.677 | 62 | 25 | 0 | 20 | 81 | 335 | 396 | 1.98e-16 | 79.7 |
| Msa0558740 | AT2G37650.2 | 59.677 | 62 | 25 | 0 | 20 | 81 | 323 | 384 | 2.02e-16 | 79.3 |
| Msa0558740 | AT2G29060.2 | 51.429 | 70 | 34 | 0 | 12 | 81 | 264 | 333 | 1.03e-15 | 77.4 |
| Msa0558740 | AT2G29060.1 | 51.429 | 70 | 34 | 0 | 12 | 81 | 301 | 370 | 1.13e-15 | 77.4 |
| Msa0558740 | AT5G59450.1 | 39.796 | 98 | 52 | 2 | 6 | 98 | 203 | 298 | 1.47e-13 | 70.9 |
| Msa0558740 | AT2G29065.1 | 60.714 | 56 | 22 | 0 | 26 | 81 | 246 | 301 | 5.29e-13 | 69.3 |
| Msa0558740 | AT3G46600.1 | 46.377 | 69 | 37 | 0 | 13 | 81 | 193 | 261 | 2.59e-11 | 64.3 |
| Msa0558740 | AT3G46600.3 | 46.377 | 69 | 37 | 0 | 13 | 81 | 161 | 229 | 2.67e-11 | 63.9 |
Find 50 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATTTGTCAGGAAATAA+TGG | 0.201777 | 4_1:+57753827 | None:intergenic |
| CTGAAGCCGGTGATGAAAAT+TGG | 0.217340 | 4_1:-57754550 | Msa0558740:CDS |
| ACAAGACACCTATTCTAAAA+TGG | 0.296308 | 4_1:-57754517 | Msa0558740:CDS |
| AGGAAGCATTCTTGTCCTTC+AGG | 0.304700 | 4_1:-57756516 | Msa0558740:CDS |
| AGAAGAATAAGAAACTCTTT+TGG | 0.315159 | 4_1:-57751530 | Msa0558740:CDS |
| TGGCATTAGGCTTTATCAAT+TGG | 0.323471 | 4_1:-57754847 | Msa0558740:CDS |
| AATGAACAGTTGTCAAAGTA+TGG | 0.361823 | 4_1:-57753911 | Msa0558740:CDS |
| GTGAATTGTTGAAGCAGATT+AGG | 0.377738 | 4_1:-57756536 | Msa0558740:CDS |
| TGTGGATTTGAGGACCCTTT+TGG | 0.396694 | 4_1:-57756604 | Msa0558740:CDS |
| TTAGGAAATTGCAATTTGTC+AGG | 0.408882 | 4_1:+57753818 | None:intergenic |
| TCACCGGCTTCAGACCTTGT+TGG | 0.411347 | 4_1:+57754560 | None:intergenic |
| GGCATTAGGCTTTATCAATT+GGG | 0.412671 | 4_1:-57754846 | Msa0558740:CDS |
| CTGTGTCTGCTAATGACAAT+AGG | 0.426533 | 4_1:-57756566 | Msa0558740:CDS |
| GTTTAATGAAGAATTGTTCA+AGG | 0.447430 | 4_1:-57754055 | Msa0558740:CDS |
| AGAGGGATGTTGTGGATTTG+AGG | 0.451718 | 4_1:-57756614 | Msa0558740:CDS |
| TGAAGCCGGTGATGAAAATT+GGG | 0.465234 | 4_1:-57754549 | Msa0558740:CDS |
| ACACAGGTTGGTGAACTTGA+TGG | 0.468419 | 4_1:-57756669 | Msa0558740:CDS |
| GTAGCTACAGGATAGGGTTC+AGG | 0.482076 | 4_1:+57754887 | None:intergenic |
| CGAAGAAACAAGGGAGGAAG+AGG | 0.489890 | 4_1:-57756632 | Msa0558740:CDS |
| TTTGTCAGGAAATAATGGAT+TGG | 0.495789 | 4_1:+57753832 | None:intergenic |
| AGGGAGGAAGAGGGATGTTG+TGG | 0.530372 | 4_1:-57756622 | Msa0558740:CDS |
| GTCTGCGAGGGCAGTCATGT+TGG | 0.534982 | 4_1:-57753879 | Msa0558740:CDS |
| AGGTGATGCATCACAGAGAA+TGG | 0.535230 | 4_1:-57756496 | Msa0558740:CDS |
| CTCTGTGATGCATCACCTGA+AGG | 0.537655 | 4_1:+57756501 | None:intergenic |
| TCCGCAGTAGCTACAGGATA+GGG | 0.547598 | 4_1:+57754881 | None:intergenic |
| ACACTCCTCCTTCTGATACA+TGG | 0.548999 | 4_1:+57754600 | None:intergenic |
| CTTTATCAATTGGGTATCGA+TGG | 0.551786 | 4_1:-57754837 | Msa0558740:CDS |
| CTCCGCAGTAGCTACAGGAT+AGG | 0.565965 | 4_1:+57754880 | None:intergenic |
| TATTGCCATGTATCAGAAGG+AGG | 0.578751 | 4_1:-57754605 | Msa0558740:CDS |
| AATCGCACAGCTATTGACAT+TGG | 0.587279 | 4_1:-57754031 | Msa0558740:CDS |
| TTACACTACAAGGGCAGACA+AGG | 0.587331 | 4_1:-57751457 | Msa0558740:CDS |
| ATTGGGTATCGATGGCTGCA+AGG | 0.602334 | 4_1:-57754829 | Msa0558740:CDS |
| TGGTGAACTTGATGGAGGGA+AGG | 0.610203 | 4_1:-57756661 | Msa0558740:CDS |
| AAGGCGCGTTCGAAGAAACA+AGG | 0.611889 | 4_1:-57756642 | Msa0558740:CDS |
| AGACCAACAAGGTCTGAAGC+CGG | 0.614018 | 4_1:-57754563 | Msa0558740:CDS |
| ACCTATTCTAAAATGGTACA+AGG | 0.615954 | 4_1:-57754510 | Msa0558740:intron |
| TAAGGACACTCATCAATCAA+AGG | 0.619686 | 4_1:-57753778 | Msa0558740:intron |
| CAGGTTGGTGAACTTGATGG+AGG | 0.633962 | 4_1:-57756666 | Msa0558740:CDS |
| TGGTGATACGAAGTCTGCGA+GGG | 0.636924 | 4_1:-57753891 | Msa0558740:CDS |
| AAATGCGATTGAAGCGCACA+TGG | 0.638075 | 4_1:-57756460 | Msa0558740:intron |
| AGGTTGGTGAACTTGATGGA+GGG | 0.640702 | 4_1:-57756665 | Msa0558740:CDS |
| GAAGAAACAAGGGAGGAAGA+GGG | 0.647199 | 4_1:-57756631 | Msa0558740:CDS |
| GACACTATAATACAAACGAT+AGG | 0.648715 | 4_1:+57751492 | None:intergenic |
| ACCCTATCCTGTAGCTACTG+CGG | 0.665907 | 4_1:-57754882 | Msa0558740:CDS |
| AGCTTATTGAAAGACCAACA+AGG | 0.679328 | 4_1:-57754574 | Msa0558740:CDS |
| ATGGTGATACGAAGTCTGCG+AGG | 0.682747 | 4_1:-57753892 | Msa0558740:CDS |
| CGCGTTCGAAGAAACAAGGG+AGG | 0.688150 | 4_1:-57756638 | Msa0558740:CDS |
| AGTGGTGGAGAGTAGAACAC+AGG | 0.692386 | 4_1:-57756685 | None:intergenic |
| GTGGAGAGTAGAACACAGGT+TGG | 0.695448 | 4_1:-57756681 | Msa0558740:CDS |
| AGGCGCGTTCGAAGAAACAA+GGG | 0.709200 | 4_1:-57756641 | Msa0558740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATATATTAACAAAATAAA+AGG | + | chr4_1:57753665-57753684 | None:intergenic | 10.0% |
| !! | GTATACAAAAAAAAAATGAA+TGG | - | chr4_1:57752052-57752071 | Msa0558740:intron | 15.0% |
| !!! | AGCATAAAAAACTTTAATTT+TGG | + | chr4_1:57752671-57752690 | None:intergenic | 15.0% |
| !!! | TTTCTATATTGTATTTTGTT+TGG | - | chr4_1:57753174-57753193 | Msa0558740:intron | 15.0% |
| !! | TCTAAATATTGTATTTGTAT+AGG | - | chr4_1:57753993-57754012 | Msa0558740:intron | 15.0% |
| !! | GTTTAATCATTAAATCTATT+GGG | + | chr4_1:57754649-57754668 | None:intergenic | 15.0% |
| !! | AGTTTAATCATTAAATCTAT+TGG | + | chr4_1:57754650-57754669 | None:intergenic | 15.0% |
| !!! | TAAAATATTTTTTAACAGTG+TGG | - | chr4_1:57754900-57754919 | Msa0558740:intron | 15.0% |
| !!! | TAGTTTTGATTTTTACTATT+TGG | - | chr4_1:57755018-57755037 | Msa0558740:intron | 15.0% |
| !!! | GTTTGTTATTCATATATTTT+AGG | - | chr4_1:57755223-57755242 | Msa0558740:intron | 15.0% |
| !!! | AAAATTAGATTCTAAGATTT+TGG | + | chr4_1:57755357-57755376 | None:intergenic | 15.0% |
| !! | TATATTATGATATCATTTGA+GGG | + | chr4_1:57755524-57755543 | None:intergenic | 15.0% |
| !! | ATATATTATGATATCATTTG+AGG | + | chr4_1:57755525-57755544 | None:intergenic | 15.0% |
| !! | AACTATATTACTTACATATA+AGG | + | chr4_1:57755715-57755734 | None:intergenic | 15.0% |
| !!! | TAAGTAATATAGTTTTCATT+AGG | - | chr4_1:57755721-57755740 | Msa0558740:intron | 15.0% |
| !!! | AAGTAATATAGTTTTCATTA+GGG | - | chr4_1:57755722-57755741 | Msa0558740:intron | 15.0% |
| !!! | TTATTAGTTTTTATTGCATT+AGG | + | chr4_1:57755993-57756012 | None:intergenic | 15.0% |
| !! | TAATGCAATAAAAACTAATA+AGG | - | chr4_1:57755992-57756011 | Msa0558740:intron | 15.0% |
| !! | TATCACAAAAGAATTTAAAA+AGG | + | chr4_1:57756040-57756059 | None:intergenic | 15.0% |
| !! | TAACACAAAACAAAAATATT+TGG | - | chr4_1:57756252-57756271 | Msa0558740:intron | 15.0% |
| !!! | TGTTTTATTGCAATATAAAA+AGG | + | chr4_1:57756572-57756591 | None:intergenic | 15.0% |
| !!! | TTTTTATATTGCAATAAAAC+AGG | - | chr4_1:57756571-57756590 | Msa0558740:CDS | 15.0% |
| !!! | AACCATTTTTTTTTATAAGC+AGG | + | chr4_1:57752276-57752295 | None:intergenic | 20.0% |
| !!! | TTGTATAGAATATTTTGTGT+TGG | - | chr4_1:57752294-57752313 | Msa0558740:intron | 20.0% |
| !! | TGAAATAGTAAACAATCATA+TGG | + | chr4_1:57752809-57752828 | None:intergenic | 20.0% |
| !!! | TTACCCTTATTTTCATAATA+TGG | - | chr4_1:57753474-57753493 | Msa0558740:intron | 20.0% |
| !! | ACTCCATATTATGAAAATAA+GGG | + | chr4_1:57753480-57753499 | None:intergenic | 20.0% |
| !! | AACTCCATATTATGAAAATA+AGG | + | chr4_1:57753481-57753500 | None:intergenic | 20.0% |
| !!! | TCAAAGGTAATATTTTCTTA+TGG | - | chr4_1:57754365-57754384 | Msa0558740:intron | 20.0% |
| !! | AAAAACATTATAGCTTGAAT+TGG | - | chr4_1:57754564-57754583 | Msa0558740:CDS | 20.0% |
| !!! | TAATCATCAATTTAGAATCA+AGG | + | chr4_1:57754697-57754716 | None:intergenic | 20.0% |
| !!! | AATTGATGATTAAACTGATT+TGG | - | chr4_1:57754705-57754724 | Msa0558740:intron | 20.0% |
| !!! | ATTGATGATTAAACTGATTT+GGG | - | chr4_1:57754706-57754725 | Msa0558740:intron | 20.0% |
| !!! | CTTTTTGTAATCTAGAAATT+TGG | - | chr4_1:57754756-57754775 | Msa0558740:intron | 20.0% |
| !! | GAATAACAAACGTAAATTAT+AGG | + | chr4_1:57755214-57755233 | None:intergenic | 20.0% |
| !! | TTAGAAAATAGAAAGCAAAA+TGG | + | chr4_1:57755921-57755940 | None:intergenic | 20.0% |
| !!! | TATTTTCTAATCCATTTGAA+AGG | - | chr4_1:57755931-57755950 | Msa0558740:intron | 20.0% |
| !! | AATTGGCAGATAATATTAAT+TGG | - | chr4_1:57756444-57756463 | Msa0558740:intron | 20.0% |
| ! | TTGTGCAAAAATAACCAAAA+GGG | + | chr4_1:57751540-57751559 | None:intergenic | 25.0% |
| !!! | TTTGTGATTTTGATTGCAAA+AGG | - | chr4_1:57751769-57751788 | Msa0558740:intron | 25.0% |
| ! | GTCTTATAAGCTAACTTTAT+TGG | - | chr4_1:57751864-57751883 | Msa0558740:intron | 25.0% |
| !!! | TGCAGGAATTTTGATAATAT+TGG | - | chr4_1:57751926-57751945 | Msa0558740:intron | 25.0% |
| ! | TTGCTGATCAATTGAATAAT+AGG | - | chr4_1:57752087-57752106 | Msa0558740:intron | 25.0% |
| ! | TGCATTCAACTTAAGATATT+TGG | - | chr4_1:57752248-57752267 | Msa0558740:intron | 25.0% |
| ! | AGCCTGCTTATAAAAAAAAA+TGG | - | chr4_1:57752271-57752290 | Msa0558740:intron | 25.0% |
| !!! | TAGAATATTTTGTGTTGGTT+TGG | - | chr4_1:57752299-57752318 | Msa0558740:intron | 25.0% |
| !! | GTTAATAAAGCATCCAAATT+TGG | + | chr4_1:57752337-57752356 | None:intergenic | 25.0% |
| !! | AATTTGGATGCTTTATTAAC+AGG | - | chr4_1:57752337-57752356 | Msa0558740:intron | 25.0% |
| !! | GTAAACAATCATATGGTTTT+TGG | + | chr4_1:57752802-57752821 | None:intergenic | 25.0% |
| ! | GATAATAAAAATATCAGGAG+AGG | + | chr4_1:57752885-57752904 | None:intergenic | 25.0% |
| ! | GCACAGATAATAAAAATATC+AGG | + | chr4_1:57752890-57752909 | None:intergenic | 25.0% |
| ! | GAAATTGAATTCTCACATTA+CGG | + | chr4_1:57753151-57753170 | None:intergenic | 25.0% |
| !!! | CTATATTGTATTTTGTTTGG+TGG | - | chr4_1:57753177-57753196 | Msa0558740:intron | 25.0% |
| ! | GTTTAATGAAGAATTGTTCA+AGG | - | chr4_1:57754072-57754091 | Msa0558740:CDS | 25.0% |
| !! | TATTGACATTGGAGAATTTT+AGG | - | chr4_1:57754107-57754126 | Msa0558740:intron | 25.0% |
| ! | ACATCTTACAAACTGAAAAT+AGG | + | chr4_1:57754166-57754185 | None:intergenic | 25.0% |
| ! | TAATAATAACCCAAACTCAA+TGG | + | chr4_1:57754191-57754210 | None:intergenic | 25.0% |
| !! | ATTGAGTTTGGGTTATTATT+AGG | - | chr4_1:57754190-57754209 | Msa0558740:intron | 25.0% |
| !! | TTGAGTTTGGGTTATTATTA+GGG | - | chr4_1:57754191-57754210 | Msa0558740:intron | 25.0% |
| !!! | AACATTGAGTTTTTTAGGTT+AGG | + | chr4_1:57754330-57754349 | None:intergenic | 25.0% |
| ! | ACCTAAAAAACTCAATGTTA+AGG | - | chr4_1:57754331-57754350 | Msa0558740:intron | 25.0% |
| !!! | TCCTTAACATTGAGTTTTTT+AGG | + | chr4_1:57754335-57754354 | None:intergenic | 25.0% |
| !!! | TTGTTTAGGTTGTGTAATAT+TGG | - | chr4_1:57754515-57754534 | Msa0558740:CDS | 25.0% |
| !! | AGTAACTGAATGATGATTTT+AGG | - | chr4_1:57754620-57754639 | Msa0558740:intron | 25.0% |
| ! | AATTTGGTCATATGATTCTT+TGG | - | chr4_1:57754772-57754791 | Msa0558740:intron | 25.0% |
| ! | TCAACAATTTACTCAATTGT+AGG | + | chr4_1:57755078-57755097 | None:intergenic | 25.0% |
| !!! | GTAAATGTGTTCTAGAAATT+AGG | - | chr4_1:57755446-57755465 | Msa0558740:intron | 25.0% |
| ! | AAAAGATGATGATTGTACAA+AGG | - | chr4_1:57755484-57755503 | Msa0558740:intron | 25.0% |
| ! | AAAGATGATGATTGTACAAA+GGG | - | chr4_1:57755485-57755504 | Msa0558740:intron | 25.0% |
| ! | AACTATAAGACATATTTGCT+TGG | - | chr4_1:57755609-57755628 | Msa0558740:intron | 25.0% |
| !!! | TATTAGCTTACCTTTTTTAC+TGG | + | chr4_1:57755877-57755896 | None:intergenic | 25.0% |
| ! | AGTAAAAAAGGTAAGCTAAT+AGG | - | chr4_1:57755876-57755895 | Msa0558740:intron | 25.0% |
| ! | TTAATGCCTATTAGAAAACA+GGG | + | chr4_1:57755967-57755986 | None:intergenic | 25.0% |
| ! | ATTAATGCCTATTAGAAAAC+AGG | + | chr4_1:57755968-57755987 | None:intergenic | 25.0% |
| !!! | TAGTTTTTTCTAGTGAAAGT+CGG | + | chr4_1:57756159-57756178 | None:intergenic | 25.0% |
| ! | AAATTAAGGGAAAAATATGC+AGG | + | chr4_1:57756338-57756357 | None:intergenic | 25.0% |
| ! | ATTAATTGGACTATCATTCT+TGG | - | chr4_1:57756458-57756477 | Msa0558740:intron | 25.0% |
| ! | CAATATACTTGGTTACATAA+AGG | + | chr4_1:57756488-57756507 | None:intergenic | 25.0% |
| !! | AAGAGAAAAAGGGTAATTTT+TGG | + | chr4_1:57756519-57756538 | None:intergenic | 25.0% |
| ! | AATGGAAATGAAGAGAAAAA+GGG | + | chr4_1:57756529-57756548 | None:intergenic | 25.0% |
| ! | AAATGGAAATGAAGAGAAAA+AGG | + | chr4_1:57756530-57756549 | None:intergenic | 25.0% |
| !! | AGAAGAATAAGAAACTCTTT+TGG | - | chr4_1:57756597-57756616 | Msa0558740:CDS | 25.0% |
| !! | GAAGAATAAGAAACTCTTTT+GGG | - | chr4_1:57756598-57756617 | Msa0558740:CDS | 25.0% |
| !! | TTTTTCTGTTTACACTACAA+GGG | - | chr4_1:57756661-57756680 | Msa0558740:CDS | 25.0% |
| CTTGTGCAAAAATAACCAAA+AGG | + | chr4_1:57751541-57751560 | None:intergenic | 30.0% | |
| ! | AATCAGCACTAAACATCTTT+TGG | + | chr4_1:57751730-57751749 | None:intergenic | 30.0% |
| ACTTCTATCAAAATTAGCAG+TGG | - | chr4_1:57751977-57751996 | Msa0558740:intron | 30.0% | |
| TGAACTTTAACAACCTCTTA+TGG | - | chr4_1:57752167-57752186 | Msa0558740:intron | 30.0% | |
| GGCTCATTGTTACAATATAT+TGG | - | chr4_1:57752188-57752207 | Msa0558740:intron | 30.0% | |
| GCTGATTAGAATACCAAATT+TGG | - | chr4_1:57752321-57752340 | Msa0558740:intron | 30.0% | |
| TCTACTGTGTTAAATGTAAC+TGG | - | chr4_1:57752448-57752467 | Msa0558740:intron | 30.0% | |
| AGTACAATGTACAACAGAAA+TGG | + | chr4_1:57752475-57752494 | None:intergenic | 30.0% | |
| ! | GACTATCAAAGCACTTAAAA+TGG | + | chr4_1:57752533-57752552 | None:intergenic | 30.0% |
| GAGAGGTAATTATACTACAA+CGG | + | chr4_1:57752844-57752863 | None:intergenic | 30.0% | |
| GTATAATTACCTCTCCTTTA+TGG | - | chr4_1:57752849-57752868 | Msa0558740:intron | 30.0% | |
| AATTTCCCAAAATAAAGAGC+AGG | - | chr4_1:57753343-57753362 | Msa0558740:intron | 30.0% | |
| ! | TGACATCTAATTTTTGCATG+TGG | + | chr4_1:57753415-57753434 | None:intergenic | 30.0% |
| ! | TTTTATTGCCATGTATCAGA+AGG | - | chr4_1:57753519-57753538 | Msa0558740:intron | 30.0% |
| ! | ACAAGACACCTATTCTAAAA+TGG | - | chr4_1:57753610-57753629 | Msa0558740:intron | 30.0% |
| !! | ACCTATTCTAAAATGGTACA+AGG | - | chr4_1:57753617-57753636 | Msa0558740:intron | 30.0% |
| !!! | ACCTTGTACCATTTTAGAAT+AGG | + | chr4_1:57753621-57753640 | None:intergenic | 30.0% |
| !! | GGAGAGTTTTTAGATGTTAT+AGG | + | chr4_1:57753695-57753714 | None:intergenic | 30.0% |
| GAATGCACATGCAATAAAAT+TGG | + | chr4_1:57753716-57753735 | None:intergenic | 30.0% | |
| TGTGCATTCTTTAGATACTT+TGG | - | chr4_1:57753727-57753746 | Msa0558740:intron | 30.0% | |
| GTGCATTCTTTAGATACTTT+GGG | - | chr4_1:57753728-57753747 | Msa0558740:intron | 30.0% | |
| !! | TCAGTTTGTTGAAGTATAAC+TGG | + | chr4_1:57753809-57753828 | None:intergenic | 30.0% |
| CTGCAATTAAAAGGATTATG+AGG | + | chr4_1:57753888-57753907 | None:intergenic | 30.0% | |
| TGTTCACAACTGCAATTAAA+AGG | + | chr4_1:57753897-57753916 | None:intergenic | 30.0% | |
| TCAAACTAAAATTCTGAGCA+TGG | + | chr4_1:57753931-57753950 | None:intergenic | 30.0% | |
| TGTATTTGTATAGGCATGAT+CGG | - | chr4_1:57754002-57754021 | Msa0558740:intron | 30.0% | |
| AATGAACAGTTGTCAAAGTA+TGG | - | chr4_1:57754216-57754235 | Msa0558740:intron | 30.0% | |
| !! | TTTGTCAGGAAATAATGGAT+TGG | + | chr4_1:57754298-57754317 | None:intergenic | 30.0% |
| TGCAATTTGTCAGGAAATAA+TGG | + | chr4_1:57754303-57754322 | None:intergenic | 30.0% | |
| TTAGGAAATTGCAATTTGTC+AGG | + | chr4_1:57754312-57754331 | None:intergenic | 30.0% | |
| CTTATGGTTCAATTCTTCAA+CGG | - | chr4_1:57754381-57754400 | Msa0558740:intron | 30.0% | |
| GAATCAAGGATAGTATTCAA+AGG | + | chr4_1:57754683-57754702 | None:intergenic | 30.0% | |
| !!! | ATGATTCTTTGGTTTTGTTC+TGG | - | chr4_1:57754783-57754802 | Msa0558740:intron | 30.0% |
| ATTCCACTTTCAAACTATAG+TGG | - | chr4_1:57754935-57754954 | Msa0558740:intron | 30.0% | |
| TCCAAAACTTATCATGTTGT+TGG | - | chr4_1:57754979-57754998 | Msa0558740:intron | 30.0% | |
| ! | ACCAACAACATGATAAGTTT+TGG | + | chr4_1:57754983-57755002 | None:intergenic | 30.0% |
| ! | CATGTTGTTGGTTATATGTT+TGG | - | chr4_1:57754991-57755010 | Msa0558740:intron | 30.0% |
| TTTACTCAATTGTAGGTGAA+CGG | + | chr4_1:57755071-57755090 | None:intergenic | 30.0% | |
| GCAAGTTAAATACATCAAAG+TGG | - | chr4_1:57755104-57755123 | Msa0558740:intron | 30.0% | |
| ! | TTTTCTTTCCTTCTAGACTA+AGG | - | chr4_1:57755149-57755168 | Msa0558740:intron | 30.0% |
| ! | AAAACTAACAAGAGCTTTAG+TGG | - | chr4_1:57755395-57755414 | Msa0558740:intron | 30.0% |
| ! | AAACTAACAAGAGCTTTAGT+GGG | - | chr4_1:57755396-57755415 | Msa0558740:intron | 30.0% |
| AAATCAGATATAGTTGCTCA+CGG | + | chr4_1:57755836-57755855 | None:intergenic | 30.0% | |
| ! | ATGAATTTGAGTTCGATTCA+TGG | - | chr4_1:57756117-57756136 | Msa0558740:intron | 30.0% |
| ! | TGAATTTGAGTTCGATTCAT+GGG | - | chr4_1:57756118-57756137 | Msa0558740:intron | 30.0% |
| !!! | AGTTTTTTCTAGTGAAAGTC+GGG | + | chr4_1:57756158-57756177 | None:intergenic | 30.0% |
| !!! | TGTTAACCTCTGGTTTTTAA+GGG | + | chr4_1:57756237-57756256 | None:intergenic | 30.0% |
| !!! | TTTTGTTTTGTGTTAACCTC+TGG | + | chr4_1:57756247-57756266 | None:intergenic | 30.0% |
| ! | GTACACGGATGATTAATTTT+AGG | + | chr4_1:57756304-57756323 | None:intergenic | 30.0% |
| ACGACAAATGAGCAAATTAA+GGG | + | chr4_1:57756351-57756370 | None:intergenic | 30.0% | |
| !! | ATATTTGTTTCTGCTTACAG+TGG | - | chr4_1:57756421-57756440 | Msa0558740:intron | 30.0% |
| ATACTTGGTTACATAAAGGA+AGG | + | chr4_1:57756484-57756503 | None:intergenic | 30.0% | |
| TGGCATTCTTACAATATACT+TGG | + | chr4_1:57756499-57756518 | None:intergenic | 30.0% | |
| GACACTATAATACAAACGAT+AGG | + | chr4_1:57756638-57756657 | None:intergenic | 30.0% | |
| ! | CTTTTTCTGTTTACACTACA+AGG | - | chr4_1:57756660-57756679 | Msa0558740:CDS | 30.0% |
| GTGAATTGTTGAAGCAGATT+AGG | - | chr4_1:57751591-57751610 | Msa0558740:intron | 35.0% | |
| !!! | AGTGCTGATTTTGATTGTGT+AGG | - | chr4_1:57751740-57751759 | Msa0558740:intron | 35.0% |
| ! | GGAATAGAAGTTTTACGTAG+AGG | - | chr4_1:57752108-57752127 | Msa0558740:intron | 35.0% |
| TTGTAACAATGAGCCATAAG+AGG | + | chr4_1:57752183-57752202 | None:intergenic | 35.0% | |
| AGTTGCTAGAATGAAAGTTG+AGG | - | chr4_1:57752388-57752407 | Msa0558740:intron | 35.0% | |
| AAAGTTGAGGACATAAACTG+AGG | - | chr4_1:57752401-57752420 | Msa0558740:intron | 35.0% | |
| TAGTGTATGAAACTGTCGAA+AGG | - | chr4_1:57752692-57752711 | Msa0558740:intron | 35.0% | |
| AATGTGCAGCAAAAATCGAT+TGG | - | chr4_1:57752915-57752934 | Msa0558740:intron | 35.0% | |
| !! | ATCGATTGGTTTGCAATGAT+TGG | - | chr4_1:57752929-57752948 | Msa0558740:intron | 35.0% |
| ! | GAGTTTTTGAATGTGGCATT+AGG | - | chr4_1:57753267-57753286 | Msa0558740:intron | 35.0% |
| ! | TGGCATTAGGCTTTATCAAT+TGG | - | chr4_1:57753280-57753299 | Msa0558740:intron | 35.0% |
| ! | GGCATTAGGCTTTATCAATT+GGG | - | chr4_1:57753281-57753300 | Msa0558740:intron | 35.0% |
| !! | CTTTATCAATTGGGTATCGA+TGG | - | chr4_1:57753290-57753309 | Msa0558740:intron | 35.0% |
| !!! | TAGCTCCTGCTCTTTATTTT+GGG | + | chr4_1:57753351-57753370 | None:intergenic | 35.0% |
| AAAATCTGACAATATCACCC+TGG | + | chr4_1:57753382-57753401 | None:intergenic | 35.0% | |
| ! | GGGTGATATTGTCAGATTTT+TGG | - | chr4_1:57753382-57753401 | Msa0558740:intron | 35.0% |
| AACTACAGATGCAAATCTCA+GGG | + | chr4_1:57753450-57753469 | None:intergenic | 35.0% | |
| AAACTACAGATGCAAATCTC+AGG | + | chr4_1:57753451-57753470 | None:intergenic | 35.0% | |
| AGCTTATTGAAAGACCAACA+AGG | - | chr4_1:57753553-57753572 | Msa0558740:intron | 35.0% | |
| ! | CTTATCCCAATTTTCATCAC+CGG | + | chr4_1:57753586-57753605 | None:intergenic | 35.0% |
| !!! | CTTTAGTTTGAACGCAGTTT+TGG | - | chr4_1:57753847-57753866 | Msa0558740:CDS | 35.0% |
| TAAGATGTAGCCATTGAGTT+TGG | - | chr4_1:57754178-57754197 | Msa0558740:intron | 35.0% | |
| AAGATGTAGCCATTGAGTTT+GGG | - | chr4_1:57754179-57754198 | Msa0558740:intron | 35.0% | |
| TAAGGACACTCATCAATCAA+AGG | - | chr4_1:57754349-57754368 | Msa0558740:intron | 35.0% | |
| ! | TCACTTTCTAGCAGTTGTTT+AGG | - | chr4_1:57754501-57754520 | Msa0558740:intron | 35.0% |
| !!! | AAACTGATTTGGGCTGATTT+TGG | - | chr4_1:57754716-57754735 | Msa0558740:intron | 35.0% |
| TTCTGGCATATGATAGTCAA+TGG | - | chr4_1:57754800-57754819 | Msa0558740:intron | 35.0% | |
| ! | GTTATTGTGTTTGCTTGCTA+TGG | - | chr4_1:57754835-57754854 | Msa0558740:CDS | 35.0% |
| CAACCACTATAGTTTGAAAG+TGG | + | chr4_1:57754941-57754960 | None:intergenic | 35.0% | |
| TGACTATACCTTAGTCTAGA+AGG | + | chr4_1:57755160-57755179 | None:intergenic | 35.0% | |
| ! | AACTAACAAGAGCTTTAGTG+GGG | - | chr4_1:57755397-57755416 | Msa0558740:intron | 35.0% |
| TTATGCAGCACCAGTAAAAA+AGG | - | chr4_1:57755864-57755883 | Msa0558740:intron | 35.0% | |
| GCTCTACTAAACCTTTCAAA+TGG | + | chr4_1:57755945-57755964 | None:intergenic | 35.0% | |
| ACCACGTGAGTTTAATTGTT+CGG | + | chr4_1:57756065-57756084 | None:intergenic | 35.0% | |
| ! | TAATTTGGAGTTCAATCGGA+AGG | + | chr4_1:57756201-57756220 | None:intergenic | 35.0% |
| ! | CGGATAATTTGGAGTTCAAT+CGG | + | chr4_1:57756205-57756224 | None:intergenic | 35.0% |
| CGATTGAACTCCAAATTATC+CGG | - | chr4_1:57756203-57756222 | Msa0558740:intron | 35.0% | |
| !!! | GTGTTAACCTCTGGTTTTTA+AGG | + | chr4_1:57756238-57756257 | None:intergenic | 35.0% |
| !! | CAGGAAAGAAGTATTGTACA+CGG | + | chr4_1:57756319-57756338 | None:intergenic | 35.0% |
| CACGACAAATGAGCAAATTA+AGG | + | chr4_1:57756352-57756371 | None:intergenic | 35.0% | |
| ! | GAATAAGAAACTCTTTTGGG+TGG | - | chr4_1:57756601-57756620 | Msa0558740:CDS | 35.0% |
| CTGTGTCTGCTAATGACAAT+AGG | - | chr4_1:57751561-57751580 | Msa0558740:intron | 40.0% | |
| TCCATCTCTATGATGCTGAA+AGG | - | chr4_1:57751830-57751849 | Msa0558740:intron | 40.0% | |
| ACCTTTCAGCATCATAGAGA+TGG | + | chr4_1:57751834-57751853 | None:intergenic | 40.0% | |
| TGGCAGCGTTTGTAATCATT+CGG | - | chr4_1:57751946-57751965 | Msa0558740:intron | 40.0% | |
| ! | TGCTGAAAGGTATGTTAGCA+TGG | - | chr4_1:57752024-57752043 | Msa0558740:intron | 40.0% |
| ! | GCTGAAAGGTATGTTAGCAT+GGG | - | chr4_1:57752025-57752044 | Msa0558740:intron | 40.0% |
| AAGGTATGTTAGCATGGGTT+CGG | - | chr4_1:57752030-57752049 | Msa0558740:intron | 40.0% | |
| TTCACATGTCCATAAAGGAG+AGG | + | chr4_1:57752861-57752880 | None:intergenic | 40.0% | |
| GAGGTTTCACATGTCCATAA+AGG | + | chr4_1:57752866-57752885 | None:intergenic | 40.0% | |
| AACTTCGCTATGGTTGACAA+CGG | - | chr4_1:57753060-57753079 | Msa0558740:intron | 40.0% | |
| ! | TGGTTGACAACGGTATTTTC+AGG | - | chr4_1:57753070-57753089 | Msa0558740:intron | 40.0% |
| CGATTTCATGAATCCGAAGT+TGG | + | chr4_1:57753115-57753134 | None:intergenic | 40.0% | |
| ! | TACTGCGGAGTTTTTGAATG+TGG | - | chr4_1:57753260-57753279 | Msa0558740:intron | 40.0% |
| !! | GTAGCTCCTGCTCTTTATTT+TGG | + | chr4_1:57753352-57753371 | None:intergenic | 40.0% |
| ACAATATCACCCTGGTCAAT+TGG | + | chr4_1:57753374-57753393 | None:intergenic | 40.0% | |
| TATTGCCATGTATCAGAAGG+AGG | - | chr4_1:57753522-57753541 | Msa0558740:intron | 40.0% | |
| TGAAGCCGGTGATGAAAATT+GGG | - | chr4_1:57753578-57753597 | Msa0558740:intron | 40.0% | |
| AGCTGTAGAGATATGAGTGA+AGG | - | chr4_1:57754030-57754049 | Msa0558740:CDS | 40.0% | |
| AATCGCACAGCTATTGACAT+TGG | - | chr4_1:57754096-57754115 | Msa0558740:intron | 40.0% | |
| AATTGTAGGTGAACGGTGAT+TGG | + | chr4_1:57755064-57755083 | None:intergenic | 40.0% | |
| TTCTGATCAGCAGCTATACA+CGG | + | chr4_1:57755268-57755287 | None:intergenic | 40.0% | |
| ! | GTAGAGCCCTGTTTTCTAAT+AGG | - | chr4_1:57755958-57755977 | Msa0558740:intron | 40.0% |
| ACCGAACAATTAAACTCACG+TGG | - | chr4_1:57756061-57756080 | Msa0558740:intron | 40.0% | |
| AAACTCACGTGGTTAATGAG+TGG | - | chr4_1:57756072-57756091 | Msa0558740:intron | 40.0% | |
| !!! | TCTGGTTTTTAAGGGAAAGG+AGG | + | chr4_1:57756229-57756248 | None:intergenic | 40.0% |
| TCCTTTCCCTTAAAAACCAG+AGG | - | chr4_1:57756228-57756247 | Msa0558740:intron | 40.0% | |
| !!! | ACCTCTGGTTTTTAAGGGAA+AGG | + | chr4_1:57756232-57756251 | None:intergenic | 40.0% |
| GTTTCTGCTTACAGTGGAAT+TGG | - | chr4_1:57756427-57756446 | Msa0558740:intron | 40.0% | |
| !! | ACACAGGTTGGTGAACTTGA+TGG | - | chr4_1:57751458-57751477 | Msa0558740:CDS | 45.0% |
| !! | AGGTTGGTGAACTTGATGGA+GGG | - | chr4_1:57751462-57751481 | Msa0558740:CDS | 45.0% |
| GAAGAAACAAGGGAGGAAGA+GGG | - | chr4_1:57751496-57751515 | Msa0558740:CDS | 45.0% | |
| AGAGGGATGTTGTGGATTTG+AGG | - | chr4_1:57751513-57751532 | Msa0558740:CDS | 45.0% | |
| ! | TGTGGATTTGAGGACCCTTT+TGG | - | chr4_1:57751523-57751542 | Msa0558740:CDS | 45.0% |
| !! | AGGAAGCATTCTTGTCCTTC+AGG | - | chr4_1:57751611-57751630 | Msa0558740:intron | 45.0% |
| AGGTGATGCATCACAGAGAA+TGG | - | chr4_1:57751631-57751650 | Msa0558740:intron | 45.0% | |
| AAATGCGATTGAAGCGCACA+TGG | - | chr4_1:57751667-57751686 | Msa0558740:intron | 45.0% | |
| ! | GCAGTTACTTTCTTGCCTCA+GGG | - | chr4_1:57751791-57751810 | Msa0558740:intron | 45.0% |
| ! | CAGTTACTTTCTTGCCTCAG+GGG | - | chr4_1:57751792-57751811 | Msa0558740:intron | 45.0% |
| ! | AGTTACTTTCTTGCCTCAGG+GGG | - | chr4_1:57751793-57751812 | Msa0558740:intron | 45.0% |
| GTATGAATGTACGACTGTGC+AGG | - | chr4_1:57751909-57751928 | Msa0558740:intron | 45.0% | |
| ! | TCCTCAGTTGTAGTGCTGAA+AGG | - | chr4_1:57752011-57752030 | Msa0558740:intron | 45.0% |
| ACCTTTCAGCACTACAACTG+AGG | + | chr4_1:57752015-57752034 | None:intergenic | 45.0% | |
| GTATGAAACTGTCGAAAGGC+AGG | - | chr4_1:57752696-57752715 | Msa0558740:intron | 45.0% | |
| TCAACCATAGCGAAGTTGAG+CGG | + | chr4_1:57753057-57753076 | None:intergenic | 45.0% | |
| !!! | GACAACGGTATTTTCAGGTC+CGG | - | chr4_1:57753075-57753094 | Msa0558740:intron | 45.0% |
| TTTCCCGATTCTGCCAACTT+CGG | - | chr4_1:57753099-57753118 | Msa0558740:intron | 45.0% | |
| AATCCGAAGTTGGCAGAATC+GGG | + | chr4_1:57753105-57753124 | None:intergenic | 45.0% | |
| GAATCCGAAGTTGGCAGAAT+CGG | + | chr4_1:57753106-57753125 | None:intergenic | 45.0% | |
| AAAAACTCCGCAGTAGCTAC+AGG | + | chr4_1:57753255-57753274 | None:intergenic | 45.0% | |
| ACACTCCTCCTTCTGATACA+TGG | + | chr4_1:57753530-57753549 | None:intergenic | 45.0% | |
| CTGAAGCCGGTGATGAAAAT+TGG | - | chr4_1:57753577-57753596 | Msa0558740:intron | 45.0% | |
| ACTTTGGGCTCTACATGACT+TGG | - | chr4_1:57753743-57753762 | Msa0558740:intron | 45.0% | |
| TTAGGCGATTAACTCACTCC+TGG | - | chr4_1:57755241-57755260 | Msa0558740:intron | 45.0% | |
| TAGGCGATTAACTCACTCCT+GGG | - | chr4_1:57755242-57755261 | Msa0558740:intron | 45.0% | |
| ! | AAGAGCTTTAGTGGGGTTTC+AGG | - | chr4_1:57755404-57755423 | Msa0558740:intron | 45.0% |
| ! | AGAGCTTTAGTGGGGTTTCA+GGG | - | chr4_1:57755405-57755424 | Msa0558740:intron | 45.0% |
| GGTTTCAGGGGAAGTTCTTA+TGG | - | chr4_1:57755418-57755437 | Msa0558740:intron | 45.0% | |
| !! | GTTTTTAAGGGAAAGGAGGC+CGG | + | chr4_1:57756225-57756244 | None:intergenic | 45.0% |
| TTACACTACAAGGGCAGACA+AGG | - | chr4_1:57756670-57756689 | Msa0558740:CDS | 45.0% | |
| !! | CAATAAATATAAATATTAAA+TGG | + | chr4_1:57756547-57756566 | None:intergenic | 5.0% |
| GTGGAGAGTAGAACACAGGT+TGG | - | chr4_1:57751446-57751465 | Msa0558740:CDS | 50.0% | |
| !! | CAGGTTGGTGAACTTGATGG+AGG | - | chr4_1:57751461-57751480 | Msa0558740:CDS | 50.0% |
| TGGTGAACTTGATGGAGGGA+AGG | - | chr4_1:57751466-57751485 | Msa0558740:CDS | 50.0% | |
| AAGGCGCGTTCGAAGAAACA+AGG | - | chr4_1:57751485-57751504 | Msa0558740:CDS | 50.0% | |
| AGGCGCGTTCGAAGAAACAA+GGG | - | chr4_1:57751486-57751505 | Msa0558740:CDS | 50.0% | |
| CGAAGAAACAAGGGAGGAAG+AGG | - | chr4_1:57751495-57751514 | Msa0558740:CDS | 50.0% | |
| CTCTGTGATGCATCACCTGA+AGG | + | chr4_1:57751629-57751648 | None:intergenic | 50.0% | |
| !! | CACATGGTTGGTGCTGGTAA+CGG | - | chr4_1:57751683-57751702 | Msa0558740:intron | 50.0% |
| ! | GGCAGTTACTTTCTTGCCTC+AGG | - | chr4_1:57751790-57751809 | Msa0558740:intron | 50.0% |
| GAAACTGTCGAAAGGCAGGT+TGG | - | chr4_1:57752700-57752719 | Msa0558740:intron | 50.0% | |
| ! | TTGAGCTTGCTCGACTCAAG+TGG | - | chr4_1:57752969-57752988 | Msa0558740:intron | 50.0% |
| GTTGGCAGAATCGGGAAAAC+CGG | + | chr4_1:57753097-57753116 | None:intergenic | 50.0% | |
| GTAGCTACAGGATAGGGTTC+AGG | + | chr4_1:57753243-57753262 | None:intergenic | 50.0% | |
| ACCCTATCCTGTAGCTACTG+CGG | - | chr4_1:57753245-57753264 | Msa0558740:intron | 50.0% | |
| TCCGCAGTAGCTACAGGATA+GGG | + | chr4_1:57753249-57753268 | None:intergenic | 50.0% | |
| !! | ATTGGGTATCGATGGCTGCA+AGG | - | chr4_1:57753298-57753317 | Msa0558740:intron | 50.0% |
| CAGGAGCTACCAATTGACCA+GGG | - | chr4_1:57753362-57753381 | Msa0558740:intron | 50.0% | |
| ! | AGACCAACAAGGTCTGAAGC+CGG | - | chr4_1:57753564-57753583 | Msa0558740:intron | 50.0% |
| ATGGTGATACGAAGTCTGCG+AGG | - | chr4_1:57754235-57754254 | Msa0558740:intron | 50.0% | |
| TGGTGATACGAAGTCTGCGA+GGG | - | chr4_1:57754236-57754255 | Msa0558740:intron | 50.0% | |
| ! | GAGCTTTAGTGGGGTTTCAG+GGG | - | chr4_1:57755406-57755425 | Msa0558740:intron | 50.0% |
| GGAAAGGAGGCCGGATAATT+TGG | + | chr4_1:57756216-57756235 | None:intergenic | 50.0% | |
| CGCGTTCGAAGAAACAAGGG+AGG | - | chr4_1:57751489-57751508 | Msa0558740:CDS | 55.0% | |
| AGGGAGGAAGAGGGATGTTG+TGG | - | chr4_1:57751505-57751524 | Msa0558740:CDS | 55.0% | |
| GCGATTGAAGCGCACATGGT+TGG | - | chr4_1:57751671-57751690 | Msa0558740:intron | 55.0% | |
| CATACAATCTCGTCCCCCTG+AGG | + | chr4_1:57751809-57751828 | None:intergenic | 55.0% | |
| ACCATAGCGAAGTTGAGCGG+CGG | + | chr4_1:57753054-57753073 | None:intergenic | 55.0% | |
| CTCCGCAGTAGCTACAGGAT+AGG | + | chr4_1:57753250-57753269 | None:intergenic | 55.0% | |
| GCAGGAGCTACCAATTGACC+AGG | - | chr4_1:57753361-57753380 | Msa0558740:intron | 55.0% | |
| !! | TCACCGGCTTCAGACCTTGT+TGG | + | chr4_1:57753570-57753589 | None:intergenic | 55.0% |
| ! | GGGCTCTACATGACTTGGAC+AGG | - | chr4_1:57753748-57753767 | Msa0558740:intron | 55.0% |
| ! | GAAGCGCACATGGTTGGTGC+TGG | - | chr4_1:57751677-57751696 | Msa0558740:intron | 60.0% |
| CGGCGGCACGAATGCTTCAT+CGG | + | chr4_1:57753037-57753056 | None:intergenic | 60.0% | |
| GTCTGCGAGGGCAGTCATGT+TGG | - | chr4_1:57754248-57754267 | Msa0558740:intron | 60.0% | |
| TCAGCAGCTATACACGGCCC+AGG | + | chr4_1:57755262-57755281 | None:intergenic | 60.0% | |
| GCCGCCGCTCAACTTCGCTA+TGG | - | chr4_1:57753050-57753069 | Msa0558740:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 57751446 | 57756703 | 57751446 | ID=Msa0558740;Name=Msa0558740 |
| chr4_1 | mRNA | 57751446 | 57756703 | 57751446 | ID=Msa0558740-mRNA-1;Parent=Msa0558740;Name=Msa0558740-mRNA-1;_AED=0.47;_eAED=0.47;_QI=0|0|0|0.22|0.62|0.66|9|0|279 |
| chr4_1 | exon | 57756461 | 57756703 | 57756461 | ID=Msa0558740-mRNA-1:exon:17535;Parent=Msa0558740-mRNA-1 |
| chr4_1 | exon | 57754816 | 57754918 | 57754816 | ID=Msa0558740-mRNA-1:exon:17534;Parent=Msa0558740-mRNA-1 |
| chr4_1 | exon | 57754511 | 57754635 | 57754511 | ID=Msa0558740-mRNA-1:exon:17533;Parent=Msa0558740-mRNA-1 |
| chr4_1 | exon | 57754021 | 57754097 | 57754021 | ID=Msa0558740-mRNA-1:exon:17532;Parent=Msa0558740-mRNA-1 |
| chr4_1 | exon | 57753779 | 57753937 | 57753779 | ID=Msa0558740-mRNA-1:exon:17531;Parent=Msa0558740-mRNA-1 |
| chr4_1 | exon | 57753372 | 57753378 | 57753372 | ID=Msa0558740-mRNA-1:exon:17530;Parent=Msa0558740-mRNA-1 |
| chr4_1 | exon | 57753226 | 57753231 | 57753226 | ID=Msa0558740-mRNA-1:exon:17529;Parent=Msa0558740-mRNA-1 |
| chr4_1 | exon | 57752979 | 57752984 | 57752979 | ID=Msa0558740-mRNA-1:exon:17528;Parent=Msa0558740-mRNA-1 |
| chr4_1 | exon | 57751446 | 57751556 | 57751446 | ID=Msa0558740-mRNA-1:exon:17527;Parent=Msa0558740-mRNA-1 |
| chr4_1 | CDS | 57756461 | 57756703 | 57756461 | ID=Msa0558740-mRNA-1:cds;Parent=Msa0558740-mRNA-1 |
| chr4_1 | CDS | 57754816 | 57754918 | 57754816 | ID=Msa0558740-mRNA-1:cds;Parent=Msa0558740-mRNA-1 |
| chr4_1 | CDS | 57754511 | 57754635 | 57754511 | ID=Msa0558740-mRNA-1:cds;Parent=Msa0558740-mRNA-1 |
| chr4_1 | CDS | 57754021 | 57754097 | 57754021 | ID=Msa0558740-mRNA-1:cds;Parent=Msa0558740-mRNA-1 |
| chr4_1 | CDS | 57753779 | 57753937 | 57753779 | ID=Msa0558740-mRNA-1:cds;Parent=Msa0558740-mRNA-1 |
| chr4_1 | CDS | 57753372 | 57753378 | 57753372 | ID=Msa0558740-mRNA-1:cds;Parent=Msa0558740-mRNA-1 |
| chr4_1 | CDS | 57753226 | 57753231 | 57753226 | ID=Msa0558740-mRNA-1:cds;Parent=Msa0558740-mRNA-1 |
| chr4_1 | CDS | 57752979 | 57752984 | 57752979 | ID=Msa0558740-mRNA-1:cds;Parent=Msa0558740-mRNA-1 |
| chr4_1 | CDS | 57751446 | 57751556 | 57751446 | ID=Msa0558740-mRNA-1:cds;Parent=Msa0558740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
