AlfalfaGEDB | Msa0562720

M. sativa cultivar zhongmu-4 / Msa0562720

KEGG: K10581
GO: GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0562720	XP_039684687.1	92.513	187	10	2	1	184	1	186	8.66e-101	309

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0562720	A0A396GS89	92.513	187	10	2	1	184	1	186	4.14e-101	309

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0562720	Msa1191990	0.831538	1.576846e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0562720	MtrunA17_Chr8g0376201	92.513	187	10	2	1	184	1	186	7.97e-105	309

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 125 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTCTATGTATAGAAT+TGG	0.402616	4_1:-62783577	Msa0562720:three_prime_UTR
AAAGTACCCTGCAGTTCCAC+CGG	0.575597	4_1:-62785946	Msa0562720:intron
AAAGTCTGCCTTAGTCTCTT+AGG	0.344468	4_1:-62785788	Msa0562720:three_prime_UTR
AACAGAATAGGGAGTGAGAA+AGG	0.471658	4_1:-62788253	Msa0562720:five_prime_UTR
AACCCAGGTGTGAAGGTCCC+AGG	0.517327	4_1:-62783719	Msa0562720:three_prime_UTR
AAGAAAAGACCGTCATGGTA+GGG	0.570573	4_1:+62785990	None:intergenic
AAGGAAGAGTGTGTGTTAAC+AGG	0.365183	4_1:-62788234	Msa0562720:five_prime_UTR
AAGTTAGCAGTAGCAGCAGC+AGG	0.536604	4_1:+62783772	None:intergenic
AATCCAAATTTATATAATAA+TGG	0.333342	4_1:-62785812	Msa0562720:three_prime_UTR
AATCTAGGATGGAGCTTATT+AGG	0.145484	4_1:-62786040	Msa0562720:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCGTGAAACTGAAATGAAA+GGG	+	chr4_1:62783585-62783604	None:intergenic	30.0%
AATCGTGAAACTGAAATGAA+AGG	+	chr4_1:62783586-62783605	None:intergenic	30.0%
AGCAGCCAAATCATATATTA+GGG	-	chr4_1:62783863-62783882	Msa0562720:three_prime_UTR	30.0%
TCGAACCCTAATATATGATT+TGG	+	chr4_1:62783871-62783890	None:intergenic	30.0%
TATTGACATGTGTTAGACAT+TGG	-	chr4_1:62784074-62784093	Msa0562720:intron	30.0%
TTAAGGTCATGTTAAGCATA+TGG	+	chr4_1:62784567-62784586	None:intergenic	30.0%
TAAAACCCTTGTAAAGCTTA+AGG	+	chr4_1:62784584-62784603	None:intergenic	30.0%
CATGGAAATTCTATGAGTAT+CGG	-	chr4_1:62784651-62784670	Msa0562720:intron	30.0%
AATTGAATTCAGTGACATTG+AGG	+	chr4_1:62784715-62784734	None:intergenic	30.0%
TCAATGTCACTGAATTCAAT+TGG	-	chr4_1:62784714-62784733	Msa0562720:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	62783438	62788284	62783438	ID=Msa0562720;Name=Msa0562720
chr4_1	mRNA	62783438	62788284	62783438	ID=Msa0562720-mRNA-1;Parent=Msa0562720;Name=Msa0562720-mRNA-1;_AED=0.02;_eAED=0.02;_QI=59\|1\|1\|1\|1\|0.8\|5\|1212\|193
chr4_1	exon	62783438	62784061	62783438	ID=Msa0562720-mRNA-1:exon:19829;Parent=Msa0562720-mRNA-1
chr4_1	exon	62785556	62785867	62785556	ID=Msa0562720-mRNA-1:exon:19828;Parent=Msa0562720-mRNA-1
chr4_1	exon	62785947	62786086	62785947	ID=Msa0562720-mRNA-1:exon:19827;Parent=Msa0562720-mRNA-1
chr4_1	exon	62786447	62787089	62786447	ID=Msa0562720-mRNA-1:exon:19826;Parent=Msa0562720-mRNA-1
chr4_1	exon	62788151	62788284	62788151	ID=Msa0562720-mRNA-1:exon:19825;Parent=Msa0562720-mRNA-1
chr4_1	five_prime_UTR	62788226	62788284	62788226	ID=Msa0562720-mRNA-1:five_prime_utr;Parent=Msa0562720-mRNA-1
chr4_1	CDS	62788151	62788225	62788151	ID=Msa0562720-mRNA-1:cds;Parent=Msa0562720-mRNA-1
chr4_1	CDS	62786583	62787089	62786583	ID=Msa0562720-mRNA-1:cds;Parent=Msa0562720-mRNA-1
chr4_1	three_prime_UTR	62786447	62786582	62786447	ID=Msa0562720-mRNA-1:three_prime_utr;Parent=Msa0562720-mRNA-1
chr4_1	three_prime_UTR	62785947	62786086	62785947	ID=Msa0562720-mRNA-1:three_prime_utr;Parent=Msa0562720-mRNA-1
chr4_1	three_prime_UTR	62785556	62785867	62785556	ID=Msa0562720-mRNA-1:three_prime_utr;Parent=Msa0562720-mRNA-1
chr4_1	three_prime_UTR	62783438	62784061	62783438	ID=Msa0562720-mRNA-1:three_prime_utr;Parent=Msa0562720-mRNA-1

Gene Sequence

>Msa0562720

ATGGATCGTCATCATCATGCCGATTCCCCCAATTCTGGCGTCGTCGTCAAGAAACGAAAACAAGAGGAAGAGCAGGATGCTTTGGTCTCTGGTCATGGAAATTCTATGAGTATCGGAGAATCATCTGGTAGTGGTGATATGTGCAAGAATACGACCTCAATGTCACTGAATTCAATTGGTTCTGATTCTGAAATTTCATTTCACAACGATGATGATGATATGATTGATGATGATGCACTTGAAGATCCTGACGATGGCTCTGACTATTACGACGATGAGGAAATCTATGAAGATGAATACTCATTTTTGCAGGATCAATTTGACAATGTGGATCTGCCTCCGGGGGTAGAAGCATCAGTGCCTTGGTTGAAGGATGTCGAATGCAAGCTGGCTGGTTCTCATGCCAATTCAGAGTCCAGTTCGAAAGCTGAAGTAGATGAATCCACAGATGAAGTCATGCAAAAGTTTCGGCAATTTAAGCAATTTGATACCGTTGATTCTATTCCTGATCATCATTATGATAAGATAGGTGCTTCAGCCGCAGAGACGCAGGTGATATATGTATTGAGAAAGTTTTTCTGA

Protein sequence

>Msa0562720

MDRHHHADSPNSGVVVKKRKQEEEQDALVSGHGNSMSIGESSGSGDMCKNTTSMSLNSIGSDSEISFHNDDDDMIDDDALEDPDDGSDYYDDEEIYEDEYSFLQDQFDNVDLPPGVEASVPWLKDVECKLAGSHANSESSSKAEVDESTDEVMQKFRQFKQFDTVDSIPDHHYDKIGASAAETQVIYVLRKFF*