Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562720 | XP_039684687.1 | 92.513 | 187 | 10 | 2 | 1 | 184 | 1 | 186 | 8.66e-101 | 309 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562720 | A0A396GS89 | 92.513 | 187 | 10 | 2 | 1 | 184 | 1 | 186 | 4.14e-101 | 309 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0562720 | Msa1191990 | 0.831538 | 1.576846e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562720 | MtrunA17_Chr8g0376201 | 92.513 | 187 | 10 | 2 | 1 | 184 | 1 | 186 | 7.97e-105 | 309 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 125 sgRNAs with CRISPR-Local
Find 329 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAAGATCTGTTAAATTTA+TGG | 0.107828 | 4_1:-62783461 | Msa0562720:three_prime_UTR |
| AATCTAGGATGGAGCTTATT+AGG | 0.145484 | 4_1:-62786040 | Msa0562720:three_prime_UTR |
| TTTCCATTATTATATAAATT+TGG | 0.177130 | 4_1:+62785809 | None:intergenic |
| TTTCTATACTAGAATTTATA+TGG | 0.257597 | 4_1:-62783538 | Msa0562720:three_prime_UTR |
| TGTAGCATGGTTGATTTATC+TGG | 0.257661 | 4_1:+62785731 | None:intergenic |
| AGAAACATATAATCGGATTA+AGG | 0.287130 | 4_1:+62786516 | None:intergenic |
| GGTCCCAGGCTGGAAGTTTA+TGG | 0.309222 | 4_1:-62783705 | Msa0562720:three_prime_UTR |
| CTTCTGTTGCCAGGATGCTT+TGG | 0.314493 | 4_1:-62787080 | Msa0562720:intron |
| AATCCAAATTTATATAATAA+TGG | 0.333342 | 4_1:-62785812 | Msa0562720:three_prime_UTR |
| CTTGACGACGACGCCAGAAT+TGG | 0.336149 | 4_1:+62788175 | None:intergenic |
| AAAGTCTGCCTTAGTCTCTT+AGG | 0.344468 | 4_1:-62785788 | Msa0562720:three_prime_UTR |
| TGCCAGGATGCTTTGGTCTC+TGG | 0.353227 | 4_1:-62787073 | Msa0562720:intron |
| TTTCGAACTGGACTCTGAAT+TGG | 0.355051 | 4_1:+62786739 | None:intergenic |
| CAGCCTGGGACCTTCACACC+TGG | 0.359549 | 4_1:+62783716 | None:intergenic |
| AAGGAAGAGTGTGTGTTAAC+AGG | 0.365183 | 4_1:-62788234 | Msa0562720:five_prime_UTR |
| TGTATACATCATTGTCTTCA+AGG | 0.393420 | 4_1:+62785574 | None:intergenic |
| ACTAGCATTACGACTACTTT+GGG | 0.394996 | 4_1:+62783927 | None:intergenic |
| GACAATGTGGATCTGCCTCC+GGG | 0.397256 | 4_1:-62786821 | Msa0562720:CDS |
| AGAGTGTGTGTTAACAGGTT+AGG | 0.399283 | 4_1:-62788229 | Msa0562720:five_prime_UTR |
| TGCTGCTGCTACTGCTAACT+TGG | 0.399297 | 4_1:-62783770 | Msa0562720:three_prime_UTR |
| CGCTGTAAGAAACATATAAT+CGG | 0.399618 | 4_1:+62786509 | None:intergenic |
| TGTATTATCATTGTAATCCT+TGG | 0.400389 | 4_1:+62785607 | None:intergenic |
| GGAACTGCAGGGTACTTTGC+AGG | 0.401038 | 4_1:+62785951 | None:intergenic |
| AAAATCTCTATGTATAGAAT+TGG | 0.402616 | 4_1:-62783577 | Msa0562720:three_prime_UTR |
| CACTAGCATTACGACTACTT+TGG | 0.405676 | 4_1:+62783926 | None:intergenic |
| TTGCGGGACATTTCCGCCTA+AGG | 0.408010 | 4_1:-62784023 | Msa0562720:three_prime_UTR |
| AGTAATATTAGTAACAGAAT+AGG | 0.413653 | 4_1:-62788265 | Msa0562720:five_prime_UTR |
| ATGGTAAGAACTGCGAAAAC+TGG | 0.416419 | 4_1:-62785757 | Msa0562720:three_prime_UTR |
| ATCTACTTCAGCTTTCGAAC+TGG | 0.417449 | 4_1:+62786727 | None:intergenic |
| ATCTTATCATAATGATGATC+AGG | 0.419705 | 4_1:+62786638 | None:intergenic |
| ATCTAGGATGGAGCTTATTA+GGG | 0.420392 | 4_1:-62786039 | Msa0562720:three_prime_UTR |
| AATTTCAGGCAGCTGTGAAT+AGG | 0.427761 | 4_1:-62783882 | Msa0562720:three_prime_UTR |
| TTGACGACGACGCCAGAATT+GGG | 0.428770 | 4_1:+62788176 | None:intergenic |
| ATGAAGTCATGCAAAAGTTT+CGG | 0.432696 | 4_1:-62786694 | Msa0562720:CDS |
| ATCAACCATGCTACAAGTCT+TGG | 0.437396 | 4_1:-62785723 | Msa0562720:three_prime_UTR |
| TCAATGTCACTGAATTCAAT+TGG | 0.437896 | 4_1:-62786986 | Msa0562720:CDS |
| GATCATCATTATGATAAGAT+AGG | 0.441368 | 4_1:-62786635 | Msa0562720:CDS |
| TCTTACAGCGACCAAAGAAC+TGG | 0.445315 | 4_1:-62786496 | Msa0562720:three_prime_UTR |
| TTGTGAGAGTTTGTGAATCT+AGG | 0.448277 | 4_1:-62786055 | Msa0562720:three_prime_UTR |
| TCAGTATGTTCCTCGCCCTT+AGG | 0.453082 | 4_1:+62784007 | None:intergenic |
| TTATGTAAAACTTCTCCAAC+TGG | 0.453968 | 4_1:+62783955 | None:intergenic |
| GAGTGTGTGTTAACAGGTTA+GGG | 0.454226 | 4_1:-62788228 | Msa0562720:five_prime_UTR |
| AGCATCAGTGCCTTGGTTGA+AGG | 0.462539 | 4_1:-62786792 | Msa0562720:CDS |
| GTAATATTAGTAACAGAATA+GGG | 0.466623 | 4_1:-62788264 | Msa0562720:five_prime_UTR |
| TTTATGGTGTGAAGGAAGCT+AGG | 0.467773 | 4_1:-62783689 | Msa0562720:three_prime_UTR |
| AACAGAATAGGGAGTGAGAA+AGG | 0.471658 | 4_1:-62788253 | Msa0562720:five_prime_UTR |
| TGACAATGTGGATCTGCCTC+CGG | 0.474870 | 4_1:-62786822 | Msa0562720:CDS |
| GACATTTCCGCCTAAGGGCG+AGG | 0.485818 | 4_1:-62784017 | Msa0562720:three_prime_UTR |
| GGAGTTATATTATAAATCTC+AGG | 0.487573 | 4_1:+62783793 | None:intergenic |
| CCCGCAACAAATTCCTCAAA+AGG | 0.488017 | 4_1:+62784039 | None:intergenic |
| ATGAGTATCGGAGAATCATC+TGG | 0.488558 | 4_1:-62787037 | Msa0562720:CDS |
| GATGCTTTGGTCTCTGGTCA+TGG | 0.491242 | 4_1:-62787067 | Msa0562720:CDS |
| TAATAGTCAGAGCCATCGTC+AGG | 0.495284 | 4_1:+62786896 | None:intergenic |
| GCTGTCATCGTTGGACCTCT+AGG | 0.497159 | 4_1:-62786017 | Msa0562720:three_prime_UTR |
| ACGAAAACAAGAGGAAGAGC+AGG | 0.502604 | 4_1:-62788150 | Msa0562720:intron |
| CTTATTAGGGCTGTCATCGT+TGG | 0.504437 | 4_1:-62786026 | Msa0562720:three_prime_UTR |
| CGATATGACTCAGCATATCC+AGG | 0.506421 | 4_1:+62785653 | None:intergenic |
| ATACATACCGGTGGAACTGC+AGG | 0.508289 | 4_1:+62785939 | None:intergenic |
| GTGTTAACAGGTTAGGGCTA+TGG | 0.511388 | 4_1:-62788222 | Msa0562720:exon |
| AACCCAGGTGTGAAGGTCCC+AGG | 0.517327 | 4_1:-62783719 | Msa0562720:three_prime_UTR |
| TCGAAATTCTTCGCAGTCTG+TGG | 0.527632 | 4_1:+62783819 | None:intergenic |
| TGCGGGACATTTCCGCCTAA+GGG | 0.528214 | 4_1:-62784022 | Msa0562720:three_prime_UTR |
| AGCCTGGGACCTTCACACCT+GGG | 0.528732 | 4_1:+62783717 | None:intergenic |
| TGCTTCAGCCGCAGAGACGC+AGG | 0.532166 | 4_1:-62786612 | Msa0562720:CDS |
| GGCACTGATGCTTCTACCCC+CGG | 0.533051 | 4_1:+62786803 | None:intergenic |
| CAGGTGTGAAGGTCCCAGGC+TGG | 0.535786 | 4_1:-62783715 | Msa0562720:three_prime_UTR |
| AAGTTAGCAGTAGCAGCAGC+AGG | 0.536604 | 4_1:+62783772 | None:intergenic |
| TTATGGTGTGAAGGAAGCTA+GGG | 0.538559 | 4_1:-62783688 | Msa0562720:three_prime_UTR |
| GCCACGTACCTAAGAGACTA+AGG | 0.539509 | 4_1:+62785780 | None:intergenic |
| CATGGAAATTCTATGAGTAT+CGG | 0.543438 | 4_1:-62787049 | Msa0562720:CDS |
| AATTGAATTCAGTGACATTG+AGG | 0.545061 | 4_1:+62786988 | None:intergenic |
| CACACCATAAACTTCCAGCC+TGG | 0.548697 | 4_1:+62783701 | None:intergenic |
| ATCGTGCTGATGAGGGGCAA+AGG | 0.554509 | 4_1:-62785634 | Msa0562720:three_prime_UTR |
| TACACTGCGTAAACCACCTA+AGG | 0.559413 | 4_1:-62785555 | Msa0562720:intron |
| GAAGAAAAGACCGTCATGGT+AGG | 0.560934 | 4_1:+62785989 | None:intergenic |
| GGGTAGAAGCATCAGTGCCT+TGG | 0.561597 | 4_1:-62786799 | Msa0562720:CDS |
| ACACCATAAACTTCCAGCCT+GGG | 0.562449 | 4_1:+62783702 | None:intergenic |
| CAGCAAGTTTACTACCACTC+AGG | 0.569662 | 4_1:-62785848 | Msa0562720:three_prime_UTR |
| AAGAAAAGACCGTCATGGTA+GGG | 0.570573 | 4_1:+62785990 | None:intergenic |
| GCAGGATCAATTTGACAATG+TGG | 0.570819 | 4_1:-62786834 | Msa0562720:CDS |
| TGACGACGACGCCAGAATTG+GGG | 0.572784 | 4_1:+62788177 | None:intergenic |
| ACTACCACTCAGGTGGCTTG+AGG | 0.574664 | 4_1:-62785838 | Msa0562720:three_prime_UTR |
| AAAGTACCCTGCAGTTCCAC+CGG | 0.575597 | 4_1:-62785946 | Msa0562720:intron |
| ATCGGAGAATCATCTGGTAG+TGG | 0.576524 | 4_1:-62787031 | Msa0562720:CDS |
| CATTCGACATCCTTCAACCA+AGG | 0.582609 | 4_1:+62786782 | None:intergenic |
| GAGTCATATCGTGCTGATGA+GGG | 0.583830 | 4_1:-62785641 | Msa0562720:three_prime_UTR |
| GATGTCGAATGCAAGCTGGC+TGG | 0.584000 | 4_1:-62786770 | Msa0562720:CDS |
| TTTATGGGACGAACCTTAGG+TGG | 0.584837 | 4_1:+62785542 | None:intergenic |
| GAGAGTTTGTGAATCTAGGA+TGG | 0.598904 | 4_1:-62786051 | Msa0562720:three_prime_UTR |
| GCTGGAAGTTTATGGTGTGA+AGG | 0.599285 | 4_1:-62783697 | Msa0562720:three_prime_UTR |
| TTGTAGATCATATGCTGAGG+GGG | 0.600786 | 4_1:-62783980 | Msa0562720:three_prime_UTR |
| GAAGGATGTCGAATGCAAGC+TGG | 0.603568 | 4_1:-62786774 | Msa0562720:CDS |
| GCTTGTAGATCATATGCTGA+GGG | 0.605567 | 4_1:-62783982 | Msa0562720:three_prime_UTR |
| GTATGTTCCTCGCCCTTAGG+CGG | 0.607824 | 4_1:+62784010 | None:intergenic |
| CGTCAAGAAACGAAAACAAG+AGG | 0.608319 | 4_1:-62788159 | Msa0562720:CDS |
| AGCTTGTAGATCATATGCTG+AGG | 0.609426 | 4_1:-62783983 | Msa0562720:three_prime_UTR |
| ACAACATAACCCAGGTGTGA+AGG | 0.612629 | 4_1:-62783726 | Msa0562720:three_prime_UTR |
| GACGACGACGCCAGAATTGG+GGG | 0.621069 | 4_1:+62788178 | None:intergenic |
| ATGATCAGGAATAGAATCAA+CGG | 0.621323 | 4_1:+62786652 | None:intergenic |
| CGCACAGAAATACCATTGTG+AGG | 0.627867 | 4_1:+62783497 | None:intergenic |
| CAAAGAAGAAAAGACCGTCA+TGG | 0.627963 | 4_1:+62785985 | None:intergenic |
| TGAGGGGCAAAGGAGATCCA+AGG | 0.628352 | 4_1:-62785624 | Msa0562720:three_prime_UTR |
| CAATGTGGATCTGCCTCCGG+GGG | 0.628727 | 4_1:-62786819 | Msa0562720:CDS |
| AGTCATATCGTGCTGATGAG+GGG | 0.629146 | 4_1:-62785640 | Msa0562720:three_prime_UTR |
| ACAATGTGGATCTGCCTCCG+GGG | 0.633818 | 4_1:-62786820 | Msa0562720:CDS |
| CAAGTTTACTACCACTCAGG+TGG | 0.636743 | 4_1:-62785845 | Msa0562720:three_prime_UTR |
| AGTCTCTTAGGTACGTGGCA+TGG | 0.640884 | 4_1:-62785776 | Msa0562720:three_prime_UTR |
| AGAAACCAAGACTTGTAGCA+TGG | 0.645266 | 4_1:+62785718 | None:intergenic |
| GCCTTAGTCTCTTAGGTACG+TGG | 0.647474 | 4_1:-62785781 | Msa0562720:three_prime_UTR |
| GCACAGAAATACCATTGTGA+GGG | 0.650903 | 4_1:+62783498 | None:intergenic |
| TTTCTACAATTCCCTCACAA+TGG | 0.650939 | 4_1:-62783509 | Msa0562720:three_prime_UTR |
| CTAGGCACTCCCTACCATGA+CGG | 0.653137 | 4_1:-62785999 | Msa0562720:three_prime_UTR |
| TACATACCGGTGGAACTGCA+GGG | 0.654447 | 4_1:+62785940 | None:intergenic |
| ATATATCACCTGCGTCTCTG+CGG | 0.658778 | 4_1:+62786604 | None:intergenic |
| TGAGTCATATCGTGCTGATG+AGG | 0.660537 | 4_1:-62785642 | Msa0562720:three_prime_UTR |
| CTCACAATGGTATTTCTGTG+CGG | 0.665562 | 4_1:-62783496 | Msa0562720:three_prime_UTR |
| CTCTGACTATTACGACGATG+AGG | 0.674543 | 4_1:-62786885 | Msa0562720:CDS |
| TCATGGTAGGGAGTGCCTAG+AGG | 0.675357 | 4_1:+62786002 | None:intergenic |
| TGTAGATCATATGCTGAGGG+GGG | 0.684377 | 4_1:-62783979 | Msa0562720:three_prime_UTR |
| GCACTTGAAGATCCTGACGA+TGG | 0.700157 | 4_1:-62786908 | Msa0562720:CDS |
| AGAGAACAACAACATAACCC+AGG | 0.704469 | 4_1:-62783734 | Msa0562720:three_prime_UTR |
| CTTGTAGATCATATGCTGAG+GGG | 0.711409 | 4_1:-62783981 | Msa0562720:three_prime_UTR |
| TATGGTGTGAAGGAAGCTAG+GGG | 0.717258 | 4_1:-62783687 | Msa0562720:three_prime_UTR |
| TTAGCCTCAAGCCACCTGAG+TGG | 0.718697 | 4_1:+62785834 | None:intergenic |
| ATGGTGTGAAGGAAGCTAGG+GGG | 0.730923 | 4_1:-62783686 | Msa0562720:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAACTAAAAAAAAATAAA+AGG | + | chr4_1:62785407-62785426 | None:intergenic | 10.0% |
| !! | AATCCAAATTTATATAATAA+TGG | - | chr4_1:62785888-62785907 | Msa0562720:intron | 10.0% |
| !! | TTTCCATTATTATATAAATT+TGG | + | chr4_1:62785894-62785913 | None:intergenic | 10.0% |
| !! | GAACATATAAATTAATATAA+AGG | + | chr4_1:62786287-62786306 | None:intergenic | 10.0% |
| !! | TTAACATATATTAAGAAAAT+TGG | - | chr4_1:62786648-62786667 | Msa0562720:CDS | 10.0% |
| !! | CATATTAGTAATATTATTTA+GGG | - | chr4_1:62786764-62786783 | Msa0562720:CDS | 10.0% |
| !! | GTAATTGATTATAAATATTA+TGG | + | chr4_1:62786950-62786969 | None:intergenic | 10.0% |
| !!! | TTTGTCTTTTTTTGATTAAT+TGG | - | chr4_1:62783701-62783720 | Msa0562720:three_prime_UTR | 15.0% |
| !!! | TTGTCTTTTTTTGATTAATT+GGG | - | chr4_1:62783702-62783721 | Msa0562720:three_prime_UTR | 15.0% |
| !!! | ATAATGAATCGTTTTTTAAA+TGG | - | chr4_1:62784218-62784237 | Msa0562720:intron | 15.0% |
| !!! | TAAATTTATGCTGATTTATT+GGG | - | chr4_1:62784447-62784466 | Msa0562720:intron | 15.0% |
| !! | TAAAAAAAAATAAAAGGCAA+AGG | + | chr4_1:62785401-62785420 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTAGTTTTGTCAA+TGG | - | chr4_1:62785411-62785430 | Msa0562720:intron | 15.0% |
| !!! | TACATTCTTAAAAATACTTT+TGG | - | chr4_1:62785446-62785465 | Msa0562720:intron | 15.0% |
| !! | ACTAAATTACCAAAATAATA+AGG | + | chr4_1:62785556-62785575 | None:intergenic | 15.0% |
| !!! | AGAACTAAATATTGTTTTAT+GGG | + | chr4_1:62786176-62786195 | None:intergenic | 15.0% |
| !!! | AGTTTTGTTTTAATAGTTTA+AGG | - | chr4_1:62786202-62786221 | Msa0562720:intron | 15.0% |
| !!! | GTTTTGTTTTAATAGTTTAA+GGG | - | chr4_1:62786203-62786222 | Msa0562720:intron | 15.0% |
| !!! | GTTTATAAAGATACAATTTT+CGG | + | chr4_1:62786422-62786441 | None:intergenic | 15.0% |
| !! | TTAATACATCTATACATAAA+GGG | + | chr4_1:62786720-62786739 | None:intergenic | 15.0% |
| !! | TTTAATACATCTATACATAA+AGG | + | chr4_1:62786721-62786740 | None:intergenic | 15.0% |
| !! | GCATATTAGTAATATTATTT+AGG | - | chr4_1:62786763-62786782 | Msa0562720:CDS | 15.0% |
| !! | ATTTCAAAATTAGATCATAT+AGG | + | chr4_1:62787369-62787388 | None:intergenic | 15.0% |
| !!! | ATTAATAATTGAAGCAATTT+TGG | + | chr4_1:62787403-62787422 | None:intergenic | 15.0% |
| !! | TTTCTATACTAGAATTTATA+TGG | - | chr4_1:62788162-62788181 | Msa0562720:CDS | 15.0% |
| !! | GACAATTTAAAAATTGTTCA+TGG | + | chr4_1:62783828-62783847 | None:intergenic | 20.0% |
| !! | ATTCATTATTCCTAACATAT+AGG | + | chr4_1:62784207-62784226 | None:intergenic | 20.0% |
| !!! | CTAAATTTATGCTGATTTAT+TGG | - | chr4_1:62784446-62784465 | Msa0562720:intron | 20.0% |
| !! | ATTTCAACTTATTCATTGTA+TGG | + | chr4_1:62784485-62784504 | None:intergenic | 20.0% |
| !!! | AATGAATAAGTTGAAATATG+AGG | - | chr4_1:62784488-62784507 | Msa0562720:intron | 20.0% |
| !!! | ATGAATAAGTTGAAATATGA+GGG | - | chr4_1:62784489-62784508 | Msa0562720:intron | 20.0% |
| !! | ATAAAAAATTACTCTCTTGA+GGG | + | chr4_1:62785303-62785322 | None:intergenic | 20.0% |
| !! | TATAAAAAATTACTCTCTTG+AGG | + | chr4_1:62785304-62785323 | None:intergenic | 20.0% |
| !! | TTAAATTAAATCATCACTCA+AGG | - | chr4_1:62785475-62785494 | Msa0562720:intron | 20.0% |
| !!! | GAAATTCAACCTTATTATTT+TGG | - | chr4_1:62785544-62785563 | Msa0562720:intron | 20.0% |
| !!! | CAGAACTAAATATTGTTTTA+TGG | + | chr4_1:62786177-62786196 | None:intergenic | 20.0% |
| !! | AAAAATGAAAATGATACTGA+GGG | + | chr4_1:62786538-62786557 | None:intergenic | 20.0% |
| !! | TAAAAATGAAAATGATACTG+AGG | + | chr4_1:62786539-62786558 | None:intergenic | 20.0% |
| !!! | TATTGATTTTTTATCTTCCA+AGG | - | chr4_1:62786741-62786760 | Msa0562720:CDS | 20.0% |
| !! | ATAATATTACTAATATGCCT+TGG | + | chr4_1:62786761-62786780 | None:intergenic | 20.0% |
| !! | TTATAAATATTATGGCAAGA+TGG | + | chr4_1:62786942-62786961 | None:intergenic | 20.0% |
| !! | CAATTACTAACATCAAAATT+TGG | - | chr4_1:62786963-62786982 | Msa0562720:CDS | 20.0% |
| !!! | TTTCACTATATCATTTTTAC+AGG | + | chr4_1:62787289-62787308 | None:intergenic | 20.0% |
| !! | TAATTGAAGAAAATAAGCAA+TGG | - | chr4_1:62787334-62787353 | Msa0562720:intron | 20.0% |
| !! | AATTAATTATTTCAGACTCT+AGG | - | chr4_1:62787525-62787544 | Msa0562720:intron | 20.0% |
| !! | TGTCAAATAAAAAATGTTCT+AGG | + | chr4_1:62788097-62788116 | None:intergenic | 20.0% |
| !!! | ATTCTATACATAGAGATTTT+TGG | + | chr4_1:62788123-62788142 | None:intergenic | 20.0% |
| !! | AAAATCTCTATGTATAGAAT+TGG | - | chr4_1:62788123-62788142 | Msa0562720:intron | 20.0% |
| !! | ATGAAGATCTGTTAAATTTA+TGG | - | chr4_1:62788239-62788258 | Msa0562720:five_prime_UTR | 20.0% |
| ! | TCTTACTAATTTCAAAAGAG+CGG | + | chr4_1:62783896-62783915 | None:intergenic | 25.0% |
| ! | TTAACTTTATAGCTCATCAA+TGG | - | chr4_1:62783917-62783936 | Msa0562720:three_prime_UTR | 25.0% |
| !! | TACGTAAAAACATTTTCAAC+AGG | + | chr4_1:62783946-62783965 | None:intergenic | 25.0% |
| ! | AATATAAGTTCGCAATTTGA+AGG | + | chr4_1:62784269-62784288 | None:intergenic | 25.0% |
| ! | TTATCATATTGCTGTAAAAG+TGG | - | chr4_1:62784296-62784315 | Msa0562720:intron | 25.0% |
| !!! | TTAACATGATTTTTTGTGCA+GGG | - | chr4_1:62784535-62784554 | Msa0562720:intron | 25.0% |
| ! | ATCTTATCATAATGATGATC+AGG | + | chr4_1:62785065-62785084 | None:intergenic | 25.0% |
| ! | GATCATCATTATGATAAGAT+AGG | - | chr4_1:62785065-62785084 | Msa0562720:intron | 25.0% |
| ! | AGAAACATATAATCGGATTA+AGG | + | chr4_1:62785187-62785206 | None:intergenic | 25.0% |
| !!! | ATTTTTTTTGTCCAGTTCTT+TGG | + | chr4_1:62785218-62785237 | None:intergenic | 25.0% |
| ! | TAAAAAATTACTCTCTTGAG+GGG | + | chr4_1:62785302-62785321 | None:intergenic | 25.0% |
| ! | TCTGAGAAAGAAAAAAAACA+TGG | + | chr4_1:62785356-62785375 | None:intergenic | 25.0% |
| ! | TGTATTATCATTGTAATCCT+TGG | + | chr4_1:62786096-62786115 | None:intergenic | 25.0% |
| !! | AAAGATACAATTTTCGGATT+AGG | + | chr4_1:62786416-62786435 | None:intergenic | 25.0% |
| ! | AATGAGCTTATAAAAAGAGA+GGG | + | chr4_1:62786569-62786588 | None:intergenic | 25.0% |
| ! | AAATGAGCTTATAAAAAGAG+AGG | + | chr4_1:62786570-62786589 | None:intergenic | 25.0% |
| ! | AGCTTATAAAAAGAGATAGA+GGG | + | chr4_1:62786608-62786627 | None:intergenic | 25.0% |
| !! | TGTTTTGTGTGCATATAAAT+AGG | - | chr4_1:62786792-62786811 | Msa0562720:CDS | 25.0% |
| !! | GTTTTGTGTGCATATAAATA+GGG | - | chr4_1:62786793-62786812 | Msa0562720:CDS | 25.0% |
| ! | ATTACAATTCCTGAATTTCA+TGG | - | chr4_1:62786834-62786853 | Msa0562720:CDS | 25.0% |
| !!! | GTTGTTTTACCTCTATAAAT+TGG | - | chr4_1:62786900-62786919 | Msa0562720:CDS | 25.0% |
| ! | CGATATACATATTAGGATTT+AGG | - | chr4_1:62787068-62787087 | Msa0562720:CDS | 25.0% |
| !! | AATCTAGATTTCATGTTTTC+TGG | - | chr4_1:62787605-62787624 | Msa0562720:intron | 25.0% |
| ! | TAAGAACCAAAAAGAATTTC+AGG | - | chr4_1:62787804-62787823 | Msa0562720:intron | 25.0% |
| ! | TTTGGTGAAAAATGCAATAA+GGG | + | chr4_1:62787854-62787873 | None:intergenic | 25.0% |
| !! | TTTTGGTGAAAAATGCAATA+AGG | + | chr4_1:62787855-62787874 | None:intergenic | 25.0% |
| !! | ATTGCATTTTTCACCAAAAA+TGG | - | chr4_1:62787856-62787875 | Msa0562720:intron | 25.0% |
| ! | GGAGTTATATTATAAATCTC+AGG | + | chr4_1:62787910-62787929 | None:intergenic | 25.0% |
| !!! | GGTATTTTTTGAAACATAGA+TGG | - | chr4_1:62788035-62788054 | Msa0562720:intron | 25.0% |
| ATCGTGAAACTGAAATGAAA+GGG | + | chr4_1:62783585-62783604 | None:intergenic | 30.0% | |
| AATCGTGAAACTGAAATGAA+AGG | + | chr4_1:62783586-62783605 | None:intergenic | 30.0% | |
| ! | ATTTCAGTTTCACGATTTTC+TGG | - | chr4_1:62783589-62783608 | Msa0562720:three_prime_UTR | 30.0% |
| !!! | TTCACGATTTTCTGGTTTTA+TGG | - | chr4_1:62783597-62783616 | Msa0562720:three_prime_UTR | 30.0% |
| AGCAGCCAAATCATATATTA+GGG | - | chr4_1:62783863-62783882 | Msa0562720:three_prime_UTR | 30.0% | |
| TCGAACCCTAATATATGATT+TGG | + | chr4_1:62783871-62783890 | None:intergenic | 30.0% | |
| TATTGACATGTGTTAGACAT+TGG | - | chr4_1:62784074-62784093 | Msa0562720:intron | 30.0% | |
| !! | CACTTTTTGTGCGTAAAAAA+AGG | + | chr4_1:62784410-62784429 | None:intergenic | 30.0% |
| !! | ATGCTGATTTATTGGGAAAA+TGG | - | chr4_1:62784454-62784473 | Msa0562720:intron | 30.0% |
| !! | TGCTGATTTATTGGGAAAAT+GGG | - | chr4_1:62784455-62784474 | Msa0562720:intron | 30.0% |
| !!! | GTTAACATGATTTTTTGTGC+AGG | - | chr4_1:62784534-62784553 | Msa0562720:intron | 30.0% |
| TTAAGGTCATGTTAAGCATA+TGG | + | chr4_1:62784567-62784586 | None:intergenic | 30.0% | |
| TAAAACCCTTGTAAAGCTTA+AGG | + | chr4_1:62784584-62784603 | None:intergenic | 30.0% | |
| CATGGAAATTCTATGAGTAT+CGG | - | chr4_1:62784651-62784670 | Msa0562720:intron | 30.0% | |
| AATTGAATTCAGTGACATTG+AGG | + | chr4_1:62784715-62784734 | None:intergenic | 30.0% | |
| TCAATGTCACTGAATTCAAT+TGG | - | chr4_1:62784714-62784733 | Msa0562720:intron | 30.0% | |
| !! | AGATGAATACTCATTTTTGC+AGG | - | chr4_1:62784848-62784867 | Msa0562720:intron | 30.0% |
| ATGAAGTCATGCAAAAGTTT+CGG | - | chr4_1:62785006-62785025 | Msa0562720:intron | 30.0% | |
| ATGATCAGGAATAGAATCAA+CGG | + | chr4_1:62785051-62785070 | None:intergenic | 30.0% | |
| CGCTGTAAGAAACATATAAT+CGG | + | chr4_1:62785194-62785213 | None:intergenic | 30.0% | |
| !! | ATTTTAGAGGAAAATTTGCC+AGG | - | chr4_1:62785254-62785273 | Msa0562720:intron | 30.0% |
| AGAAAAAGAGATAGTTTACC+TGG | + | chr4_1:62785275-62785294 | None:intergenic | 30.0% | |
| AAAAAATTACTCTCTTGAGG+GGG | + | chr4_1:62785301-62785320 | None:intergenic | 30.0% | |
| TGACGACAATAGTAAAAGTT+TGG | + | chr4_1:62785515-62785534 | None:intergenic | 30.0% | |
| ! | TCATTTTCAATCGTCTTTAC+TGG | - | chr4_1:62785577-62785596 | Msa0562720:three_prime_UTR | 30.0% |
| ! | CATTTTCAATCGTCTTTACT+GGG | - | chr4_1:62785578-62785597 | Msa0562720:three_prime_UTR | 30.0% |
| GGAACATTAATGATACATAC+CGG | + | chr4_1:62785776-62785795 | None:intergenic | 30.0% | |
| AAGACACATCTTAAAACAAG+TGG | + | chr4_1:62785797-62785816 | None:intergenic | 30.0% | |
| TATCCAGGCTCATTAAAAAA+AGG | + | chr4_1:62786035-62786054 | None:intergenic | 30.0% | |
| TGTATACATCATTGTCTTCA+AGG | + | chr4_1:62786129-62786148 | None:intergenic | 30.0% | |
| ATAATAAGCCTAATCCAAAC+GGG | + | chr4_1:62786229-62786248 | None:intergenic | 30.0% | |
| CATAATAAGCCTAATCCAAA+CGG | + | chr4_1:62786230-62786249 | None:intergenic | 30.0% | |
| AAAATAAGCCTAATCCAAAC+AGG | - | chr4_1:62786512-62786531 | Msa0562720:three_prime_UTR | 30.0% | |
| GAGCTTATAAAAAGAGATAG+AGG | + | chr4_1:62786609-62786628 | None:intergenic | 30.0% | |
| AATTCCTGAATTTCATGGTT+AGG | - | chr4_1:62786839-62786858 | Msa0562720:CDS | 30.0% | |
| TAGAGGTAAAACAACAGAAA+AGG | + | chr4_1:62786895-62786914 | None:intergenic | 30.0% | |
| AGAATCAGTCCAATTTATAG+AGG | + | chr4_1:62786912-62786931 | None:intergenic | 30.0% | |
| CTGCTCATCTATCATTATAA+TGG | + | chr4_1:62787024-62787043 | None:intergenic | 30.0% | |
| TTATAATGATAGATGAGCAG+AGG | - | chr4_1:62787024-62787043 | Msa0562720:CDS | 30.0% | |
| AAACACGCGATATACATATT+AGG | - | chr4_1:62787061-62787080 | Msa0562720:CDS | 30.0% | |
| TTCTCATCAATGCTACTATT+AGG | + | chr4_1:62787314-62787333 | None:intergenic | 30.0% | |
| GTAACTGTCAAAATCCATTA+AGG | - | chr4_1:62787450-62787469 | Msa0562720:intron | 30.0% | |
| AGATAAAAATGTGAGTGTTC+TGG | + | chr4_1:62787486-62787505 | None:intergenic | 30.0% | |
| ! | GAACACTCACATTTTTATCT+AGG | - | chr4_1:62787486-62787505 | Msa0562720:intron | 30.0% |
| TTATGTAAAACTTCTCCAAC+TGG | + | chr4_1:62787748-62787767 | None:intergenic | 30.0% | |
| !! | ATTTGCCATTTCGCGTTTTA+GGG | - | chr4_1:62783753-62783772 | Msa0562720:three_prime_UTR | 35.0% |
| ATTAACCCTAAAACGCGAAA+TGG | + | chr4_1:62783761-62783780 | None:intergenic | 35.0% | |
| CAGCAGCCAAATCATATATT+AGG | - | chr4_1:62783862-62783881 | Msa0562720:three_prime_UTR | 35.0% | |
| GACATTCACTGATACATACA+CGG | - | chr4_1:62784013-62784032 | Msa0562720:three_prime_UTR | 35.0% | |
| CGTTTGAATTTAGTTGGCAA+TGG | + | chr4_1:62784148-62784167 | None:intergenic | 35.0% | |
| TTGCCAACTAAATTCAAACG+TGG | - | chr4_1:62784148-62784167 | Msa0562720:intron | 35.0% | |
| TAGCCACGTTTGAATTTAGT+TGG | + | chr4_1:62784154-62784173 | None:intergenic | 35.0% | |
| ! | GCTGATTTATTGGGAAAATG+GGG | - | chr4_1:62784456-62784475 | Msa0562720:intron | 35.0% |
| ACATGACCTTAAGCTTTACA+AGG | - | chr4_1:62784575-62784594 | Msa0562720:intron | 35.0% | |
| CATGACCTTAAGCTTTACAA+GGG | - | chr4_1:62784576-62784595 | Msa0562720:intron | 35.0% | |
| ! | TATGTTTTTCTTCTGTTGCC+AGG | - | chr4_1:62784611-62784630 | Msa0562720:intron | 35.0% |
| GAACTGGACAAAAAAAATCC+AGG | - | chr4_1:62785220-62785239 | Msa0562720:intron | 35.0% | |
| CAAAAAAAATCCAGGAGGAA+TGG | - | chr4_1:62785228-62785247 | Msa0562720:intron | 35.0% | |
| ! | CTAAAATTTTCCATTCCTCC+TGG | + | chr4_1:62785241-62785260 | None:intergenic | 35.0% |
| ! | GGAGGAATGGAAAATTTTAG+AGG | - | chr4_1:62785241-62785260 | Msa0562720:intron | 35.0% |
| AAAAATTACTCTCTTGAGGG+GGG | + | chr4_1:62785300-62785319 | None:intergenic | 35.0% | |
| TTGTGAGAGTTTGTGAATCT+AGG | - | chr4_1:62785645-62785664 | Msa0562720:three_prime_UTR | 35.0% | |
| ! | AATCTAGGATGGAGCTTATT+AGG | - | chr4_1:62785660-62785679 | Msa0562720:three_prime_UTR | 35.0% |
| ! | ATCTAGGATGGAGCTTATTA+GGG | - | chr4_1:62785661-62785680 | Msa0562720:three_prime_UTR | 35.0% |
| ACATTAATGATACATACCGG+TGG | + | chr4_1:62785773-62785792 | None:intergenic | 35.0% | |
| ! | TGTAGCATGGTTGATTTATC+TGG | + | chr4_1:62785972-62785991 | None:intergenic | 35.0% |
| !!! | AAGCCTTTTTTTAATGAGCC+TGG | - | chr4_1:62786029-62786048 | Msa0562720:three_prime_UTR | 35.0% |
| CATCTATACATAAAGGGCAA+TGG | + | chr4_1:62786714-62786733 | None:intergenic | 35.0% | |
| TGTGTGCATATAAATAGGGA+TGG | - | chr4_1:62786797-62786816 | Msa0562720:CDS | 35.0% | |
| TGCATATAAATAGGGATGGA+GGG | - | chr4_1:62786801-62786820 | Msa0562720:CDS | 35.0% | |
| CTAACCTAACCATGAAATTC+AGG | + | chr4_1:62786846-62786865 | None:intergenic | 35.0% | |
| CTGAATTTCATGGTTAGGTT+AGG | - | chr4_1:62786844-62786863 | Msa0562720:CDS | 35.0% | |
| AATTTCATGGTTAGGTTAGG+TGG | - | chr4_1:62786847-62786866 | Msa0562720:CDS | 35.0% | |
| ACAACAGAAAAGGAGAAAAC+TGG | + | chr4_1:62786885-62786904 | None:intergenic | 35.0% | |
| ! | GGGATGTTGACTACATAAAA+GGG | + | chr4_1:62787110-62787129 | None:intergenic | 35.0% |
| ! | AGGGATGTTGACTACATAAA+AGG | + | chr4_1:62787111-62787130 | None:intergenic | 35.0% |
| AACATCCCTGTATCTTGAAA+TGG | - | chr4_1:62787122-62787141 | Msa0562720:intron | 35.0% | |
| GGTAACCATTTCAAGATACA+GGG | + | chr4_1:62787130-62787149 | None:intergenic | 35.0% | |
| AGGTAACCATTTCAAGATAC+AGG | + | chr4_1:62787131-62787150 | None:intergenic | 35.0% | |
| ! | TTTTCACATACACACGTATG+AGG | + | chr4_1:62787151-62787170 | None:intergenic | 35.0% |
| TGAAAAACCACTTGCGTTTA+AGG | - | chr4_1:62787165-62787184 | Msa0562720:intron | 35.0% | |
| GAAAAACCACTTGCGTTTAA+GGG | - | chr4_1:62787166-62787185 | Msa0562720:intron | 35.0% | |
| TCCCTAAAAGTTAGCTATCA+GGG | + | chr4_1:62787243-62787262 | None:intergenic | 35.0% | |
| TTCCCTAAAAGTTAGCTATC+AGG | + | chr4_1:62787244-62787263 | None:intergenic | 35.0% | |
| !! | TGATAGCTAACTTTTAGGGA+AGG | - | chr4_1:62787243-62787262 | Msa0562720:intron | 35.0% |
| !! | GATAGCTAACTTTTAGGGAA+GGG | - | chr4_1:62787244-62787263 | Msa0562720:intron | 35.0% |
| ! | CACTCACATTTTTATCTAGG+AGG | - | chr4_1:62787489-62787508 | Msa0562720:intron | 35.0% |
| ! | TTTTATCTAGGAGGCAGAAT+TGG | - | chr4_1:62787498-62787517 | Msa0562720:intron | 35.0% |
| ACTAGCATTACGACTACTTT+GGG | + | chr4_1:62787776-62787795 | None:intergenic | 35.0% | |
| TTTCTACAATTCCCTCACAA+TGG | - | chr4_1:62788191-62788210 | Msa0562720:CDS | 35.0% | |
| AACAGAATAGGGAGTGAGAA+AGG | - | chr4_1:62783447-62783466 | Msa0562720:three_prime_UTR | 40.0% | |
| ! | AAGGAAGAGTGTGTGTTAAC+AGG | - | chr4_1:62783466-62783485 | Msa0562720:three_prime_UTR | 40.0% |
| AGAGTGTGTGTTAACAGGTT+AGG | - | chr4_1:62783471-62783490 | Msa0562720:three_prime_UTR | 40.0% | |
| GAGTGTGTGTTAACAGGTTA+GGG | - | chr4_1:62783472-62783491 | Msa0562720:three_prime_UTR | 40.0% | |
| CGTCAAGAAACGAAAACAAG+AGG | - | chr4_1:62783541-62783560 | Msa0562720:three_prime_UTR | 40.0% | |
| !! | GATTTGCCATTTCGCGTTTT+AGG | - | chr4_1:62783752-62783771 | Msa0562720:three_prime_UTR | 40.0% |
| ! | ACACCTTCAATCAGAAGTGT+CGG | - | chr4_1:62784099-62784118 | Msa0562720:intron | 40.0% |
| !! | ATGAGTATCGGAGAATCATC+TGG | - | chr4_1:62784663-62784682 | Msa0562720:intron | 40.0% |
| GCAGGATCAATTTGACAATG+TGG | - | chr4_1:62784866-62784885 | Msa0562720:intron | 40.0% | |
| TTTCGAACTGGACTCTGAAT+TGG | + | chr4_1:62784964-62784983 | None:intergenic | 40.0% | |
| ATCTACTTCAGCTTTCGAAC+TGG | + | chr4_1:62784976-62784995 | None:intergenic | 40.0% | |
| ! | CTTTTGCATGACTTCATCTG+TGG | + | chr4_1:62785003-62785022 | None:intergenic | 40.0% |
| CTGGACAAAAAAAATCCAGG+AGG | - | chr4_1:62785223-62785242 | Msa0562720:intron | 40.0% | |
| GAGAGTTTGTGAATCTAGGA+TGG | - | chr4_1:62785649-62785668 | Msa0562720:three_prime_UTR | 40.0% | |
| AAGAAAAGACCGTCATGGTA+GGG | + | chr4_1:62785713-62785732 | None:intergenic | 40.0% | |
| CAAAGAAGAAAAGACCGTCA+TGG | + | chr4_1:62785718-62785737 | None:intergenic | 40.0% | |
| AAAGTCTGCCTTAGTCTCTT+AGG | - | chr4_1:62785912-62785931 | Msa0562720:intron | 40.0% | |
| ATGGTAAGAACTGCGAAAAC+TGG | - | chr4_1:62785943-62785962 | Msa0562720:intron | 40.0% | |
| ATCAACCATGCTACAAGTCT+TGG | - | chr4_1:62785977-62785996 | Msa0562720:three_prime_UTR | 40.0% | |
| AGAAACCAAGACTTGTAGCA+TGG | + | chr4_1:62785985-62786004 | None:intergenic | 40.0% | |
| ! | TGTTTTATGGGACGAACCTT+AGG | + | chr4_1:62786164-62786183 | None:intergenic | 40.0% |
| TAATAGTTTAAGGGCCCGTT+TGG | - | chr4_1:62786212-62786231 | Msa0562720:intron | 40.0% | |
| GTGCATATAAATAGGGATGG+AGG | - | chr4_1:62786800-62786819 | Msa0562720:CDS | 40.0% | |
| CCTAAAAGTTAGCTATCAGG+GGG | + | chr4_1:62787241-62787260 | None:intergenic | 40.0% | |
| CCCTAAAAGTTAGCTATCAG+GGG | + | chr4_1:62787242-62787261 | None:intergenic | 40.0% | |
| ! | CCCCTGATAGCTAACTTTTA+GGG | - | chr4_1:62787239-62787258 | Msa0562720:intron | 40.0% |
| TTTACAGGTACCCAAACATG+TGG | + | chr4_1:62787274-62787293 | None:intergenic | 40.0% | |
| !! | CTGGTACAAAGGTACCTTAA+TGG | + | chr4_1:62787467-62787486 | None:intergenic | 40.0% |
| ATGTGAGTGTTCTGGTACAA+AGG | + | chr4_1:62787478-62787497 | None:intergenic | 40.0% | |
| !!! | GCCTTTTGAGGAATTTGTTG+CGG | - | chr4_1:62787660-62787679 | Msa0562720:intron | 40.0% |
| !!! | CCTTTTGAGGAATTTGTTGC+GGG | - | chr4_1:62787661-62787680 | Msa0562720:intron | 40.0% |
| AGCTTGTAGATCATATGCTG+AGG | - | chr4_1:62787717-62787736 | Msa0562720:intron | 40.0% | |
| GCTTGTAGATCATATGCTGA+GGG | - | chr4_1:62787718-62787737 | Msa0562720:intron | 40.0% | |
| CTTGTAGATCATATGCTGAG+GGG | - | chr4_1:62787719-62787738 | Msa0562720:intron | 40.0% | |
| TTGTAGATCATATGCTGAGG+GGG | - | chr4_1:62787720-62787739 | Msa0562720:intron | 40.0% | |
| CACTAGCATTACGACTACTT+TGG | + | chr4_1:62787777-62787796 | None:intergenic | 40.0% | |
| ! | CAGCTGCCTGAAATTCTTTT+TGG | + | chr4_1:62787813-62787832 | None:intergenic | 40.0% |
| AATTTCAGGCAGCTGTGAAT+AGG | - | chr4_1:62787818-62787837 | Msa0562720:intron | 40.0% | |
| AGAGAACAACAACATAACCC+AGG | - | chr4_1:62787966-62787985 | Msa0562720:intron | 40.0% | |
| TTTATGGTGTGAAGGAAGCT+AGG | - | chr4_1:62788011-62788030 | Msa0562720:intron | 40.0% | |
| TTATGGTGTGAAGGAAGCTA+GGG | - | chr4_1:62788012-62788031 | Msa0562720:intron | 40.0% | |
| GCACAGAAATACCATTGTGA+GGG | + | chr4_1:62788205-62788224 | None:intergenic | 40.0% | |
| ! | CTCACAATGGTATTTCTGTG+CGG | - | chr4_1:62788204-62788223 | Msa0562720:CDS | 40.0% |
| GTGTTAACAGGTTAGGGCTA+TGG | - | chr4_1:62783478-62783497 | Msa0562720:three_prime_UTR | 45.0% | |
| ACGAAAACAAGAGGAAGAGC+AGG | - | chr4_1:62783550-62783569 | Msa0562720:three_prime_UTR | 45.0% | |
| AACACTGACAGTGTTGTGAC+TGG | + | chr4_1:62784042-62784061 | None:intergenic | 45.0% | |
| AGTCACAACACTGTCAGTGT+TGG | - | chr4_1:62784041-62784060 | Msa0562720:three_prime_UTR | 45.0% | |
| !! | CACCTTCAATCAGAAGTGTC+GGG | - | chr4_1:62784100-62784119 | Msa0562720:intron | 45.0% |
| !! | ACCTTCAATCAGAAGTGTCG+GGG | - | chr4_1:62784101-62784120 | Msa0562720:intron | 45.0% |
| ACGCAGCATGCCTATATGTT+AGG | - | chr4_1:62784194-62784213 | Msa0562720:intron | 45.0% | |
| AAGTGGCTTCCTGAACTCTT+AGG | - | chr4_1:62784313-62784332 | Msa0562720:intron | 45.0% | |
| AGTGGCTTCCTGAACTCTTA+GGG | - | chr4_1:62784314-62784333 | Msa0562720:intron | 45.0% | |
| CAAACTCTCCCTAAGAGTTC+AGG | + | chr4_1:62784325-62784344 | None:intergenic | 45.0% | |
| ! | TTAGTCTTTGCACTTGCGTG+TGG | - | chr4_1:62784378-62784397 | Msa0562720:intron | 45.0% |
| ATCGGAGAATCATCTGGTAG+TGG | - | chr4_1:62784669-62784688 | Msa0562720:intron | 45.0% | |
| TAATAGTCAGAGCCATCGTC+AGG | + | chr4_1:62784807-62784826 | None:intergenic | 45.0% | |
| CTCTGACTATTACGACGATG+AGG | - | chr4_1:62784815-62784834 | Msa0562720:intron | 45.0% | |
| CATTCGACATCCTTCAACCA+AGG | + | chr4_1:62784921-62784940 | None:intergenic | 45.0% | |
| ATATATCACCTGCGTCTCTG+CGG | + | chr4_1:62785099-62785118 | None:intergenic | 45.0% | |
| TCTTACAGCGACCAAAGAAC+TGG | - | chr4_1:62785204-62785223 | Msa0562720:intron | 45.0% | |
| CTTATTAGGGCTGTCATCGT+TGG | - | chr4_1:62785674-62785693 | Msa0562720:three_prime_UTR | 45.0% | |
| GAAGAAAAGACCGTCATGGT+AGG | + | chr4_1:62785714-62785733 | None:intergenic | 45.0% | |
| !! | GAGTGGTAGTAAACTTGCTG+CGG | + | chr4_1:62785852-62785871 | None:intergenic | 45.0% |
| CAGCAAGTTTACTACCACTC+AGG | - | chr4_1:62785852-62785871 | Msa0562720:intron | 45.0% | |
| CAAGTTTACTACCACTCAGG+TGG | - | chr4_1:62785855-62785874 | Msa0562720:intron | 45.0% | |
| CGATATGACTCAGCATATCC+AGG | + | chr4_1:62786050-62786069 | None:intergenic | 45.0% | |
| ! | TGAGTCATATCGTGCTGATG+AGG | - | chr4_1:62786058-62786077 | Msa0562720:three_prime_UTR | 45.0% |
| ! | GAGTCATATCGTGCTGATGA+GGG | - | chr4_1:62786059-62786078 | Msa0562720:three_prime_UTR | 45.0% |
| ! | AGTCATATCGTGCTGATGAG+GGG | - | chr4_1:62786060-62786079 | Msa0562720:three_prime_UTR | 45.0% |
| TACACTGCGTAAACCACCTA+AGG | - | chr4_1:62786145-62786164 | Msa0562720:intron | 45.0% | |
| TTTATGGGACGAACCTTAGG+TGG | + | chr4_1:62786161-62786180 | None:intergenic | 45.0% | |
| TTTAAGGGCCCGTTTGGATT+AGG | - | chr4_1:62786218-62786237 | Msa0562720:intron | 45.0% | |
| AATGATACTGAGGGCCTGTT+TGG | + | chr4_1:62786529-62786548 | None:intergenic | 45.0% | |
| AAGCATCCCTTAAACGCAAG+TGG | + | chr4_1:62787175-62787194 | None:intergenic | 45.0% | |
| ACTTGCGTTTAAGGGATGCT+TGG | - | chr4_1:62787174-62787193 | Msa0562720:intron | 45.0% | |
| AAAGTTAGCTATCAGGGGGA+TGG | + | chr4_1:62787237-62787256 | None:intergenic | 45.0% | |
| ! | CCCCCTGATAGCTAACTTTT+AGG | - | chr4_1:62787238-62787257 | Msa0562720:intron | 45.0% |
| GAAGGGTTCTCCACATGTTT+GGG | - | chr4_1:62787261-62787280 | Msa0562720:intron | 45.0% | |
| CAAATTCCTCAAAAGGCTGC+AGG | + | chr4_1:62787657-62787676 | None:intergenic | 45.0% | |
| CCCGCAACAAATTCCTCAAA+AGG | + | chr4_1:62787664-62787683 | None:intergenic | 45.0% | |
| TGTAGATCATATGCTGAGGG+GGG | - | chr4_1:62787721-62787740 | Msa0562720:intron | 45.0% | |
| TCGAAATTCTTCGCAGTCTG+TGG | + | chr4_1:62787884-62787903 | None:intergenic | 45.0% | |
| ACAACATAACCCAGGTGTGA+AGG | - | chr4_1:62787974-62787993 | Msa0562720:intron | 45.0% | |
| ACACCATAAACTTCCAGCCT+GGG | + | chr4_1:62788001-62788020 | None:intergenic | 45.0% | |
| GCTGGAAGTTTATGGTGTGA+AGG | - | chr4_1:62788003-62788022 | Msa0562720:intron | 45.0% | |
| TATGGTGTGAAGGAAGCTAG+GGG | - | chr4_1:62788013-62788032 | Msa0562720:intron | 45.0% | |
| CGCACAGAAATACCATTGTG+AGG | + | chr4_1:62788206-62788225 | None:intergenic | 45.0% | |
| TTGACGACGACGCCAGAATT+GGG | + | chr4_1:62783527-62783546 | None:intergenic | 50.0% | |
| !! | ACCAAGCACTGACGCATACA+CGG | - | chr4_1:62783965-62783984 | Msa0562720:three_prime_UTR | 50.0% |
| CAACATGTCAGTCTCGAGAC+TGG | + | chr4_1:62783994-62784013 | None:intergenic | 50.0% | |
| ACCCCGACACTTCTGATTGA+AGG | + | chr4_1:62784105-62784124 | None:intergenic | 50.0% | |
| ! | GGAGAGTTTGCTCCCCATTT+GGG | - | chr4_1:62784335-62784354 | Msa0562720:intron | 50.0% |
| ! | AGCCTTGTGGAACCCAAATG+GGG | + | chr4_1:62784350-62784369 | None:intergenic | 50.0% |
| ! | GAGCCTTGTGGAACCCAAAT+GGG | + | chr4_1:62784351-62784370 | None:intergenic | 50.0% |
| CTTCTGTTGCCAGGATGCTT+TGG | - | chr4_1:62784620-62784639 | Msa0562720:intron | 50.0% | |
| GATGCTTTGGTCTCTGGTCA+TGG | - | chr4_1:62784633-62784652 | Msa0562720:intron | 50.0% | |
| GCACTTGAAGATCCTGACGA+TGG | - | chr4_1:62784792-62784811 | Msa0562720:intron | 50.0% | |
| TGACAATGTGGATCTGCCTC+CGG | - | chr4_1:62784878-62784897 | Msa0562720:intron | 50.0% | |
| AGCATCAGTGCCTTGGTTGA+AGG | - | chr4_1:62784908-62784927 | Msa0562720:intron | 50.0% | |
| GAAGGATGTCGAATGCAAGC+TGG | - | chr4_1:62784926-62784945 | Msa0562720:intron | 50.0% | |
| ! | AAAGTACCCTGCAGTTCCAC+CGG | - | chr4_1:62785754-62785773 | Msa0562720:three_prime_UTR | 50.0% |
| TACATACCGGTGGAACTGCA+GGG | + | chr4_1:62785763-62785782 | None:intergenic | 50.0% | |
| ATACATACCGGTGGAACTGC+AGG | + | chr4_1:62785764-62785783 | None:intergenic | 50.0% | |
| GCCTTAGTCTCTTAGGTACG+TGG | - | chr4_1:62785919-62785938 | Msa0562720:intron | 50.0% | |
| GCCACGTACCTAAGAGACTA+AGG | + | chr4_1:62785923-62785942 | None:intergenic | 50.0% | |
| AGTCTCTTAGGTACGTGGCA+TGG | - | chr4_1:62785924-62785943 | Msa0562720:intron | 50.0% | |
| ACTGAGGGCCTGTTTGGATT+AGG | + | chr4_1:62786523-62786542 | None:intergenic | 50.0% | |
| TGGTTAGGTTAGGTGGCTGA+TGG | - | chr4_1:62786854-62786873 | Msa0562720:CDS | 50.0% | |
| TGCGTTTAAGGGATGCTTGG+AGG | - | chr4_1:62787177-62787196 | Msa0562720:intron | 50.0% | |
| GTTTAAGGGATGCTTGGAGG+TGG | - | chr4_1:62787180-62787199 | Msa0562720:intron | 50.0% | |
| GGAAGGGTTCTCCACATGTT+TGG | - | chr4_1:62787260-62787279 | Msa0562720:intron | 50.0% | |
| TCAGTATGTTCCTCGCCCTT+AGG | + | chr4_1:62787696-62787715 | None:intergenic | 50.0% | |
| !! | GCAGTCTGTGGAGCCATTTT+TGG | + | chr4_1:62787872-62787891 | None:intergenic | 50.0% |
| AAGTTAGCAGTAGCAGCAGC+AGG | + | chr4_1:62787931-62787950 | None:intergenic | 50.0% | |
| TGCTGCTGCTACTGCTAACT+TGG | - | chr4_1:62787930-62787949 | Msa0562720:intron | 50.0% | |
| CACACCATAAACTTCCAGCC+TGG | + | chr4_1:62788002-62788021 | None:intergenic | 50.0% | |
| ATGGTGTGAAGGAAGCTAGG+GGG | - | chr4_1:62788014-62788033 | Msa0562720:intron | 50.0% | |
| !! | CATGCCGATTCCCCCAATTC+TGG | - | chr4_1:62783512-62783531 | Msa0562720:three_prime_UTR | 55.0% |
| GACGCCAGAATTGGGGGAAT+CGG | + | chr4_1:62783519-62783538 | None:intergenic | 55.0% | |
| TGACGACGACGCCAGAATTG+GGG | + | chr4_1:62783526-62783545 | None:intergenic | 55.0% | |
| CTTGACGACGACGCCAGAAT+TGG | + | chr4_1:62783528-62783547 | None:intergenic | 55.0% | |
| TCCGTGTATGCGTCAGTGCT+TGG | + | chr4_1:62783969-62783988 | None:intergenic | 55.0% | |
| ! | GGGAGAGTTTGCTCCCCATT+TGG | - | chr4_1:62784334-62784353 | Msa0562720:intron | 55.0% |
| ! | CTCCCCATTTGGGTTCCACA+AGG | - | chr4_1:62784345-62784364 | Msa0562720:intron | 55.0% |
| ! | CGAGCCTTGTGGAACCCAAA+TGG | + | chr4_1:62784352-62784371 | None:intergenic | 55.0% |
| ! | TTTGGGTTCCACAAGGCTCG+AGG | - | chr4_1:62784352-62784371 | Msa0562720:intron | 55.0% |
| TTGGGTTCCACAAGGCTCGA+GGG | - | chr4_1:62784353-62784372 | Msa0562720:intron | 55.0% | |
| ACTAATCCCCTCGAGCCTTG+TGG | + | chr4_1:62784363-62784382 | None:intergenic | 55.0% | |
| GTCTTTGCACTTGCGTGTGG+AGG | - | chr4_1:62784381-62784400 | Msa0562720:intron | 55.0% | |
| TGCCAGGATGCTTTGGTCTC+TGG | - | chr4_1:62784627-62784646 | Msa0562720:intron | 55.0% | |
| ! | GACCAGAGACCAAAGCATCC+TGG | + | chr4_1:62784632-62784651 | None:intergenic | 55.0% |
| GACAATGTGGATCTGCCTCC+GGG | - | chr4_1:62784879-62784898 | Msa0562720:intron | 55.0% | |
| ACAATGTGGATCTGCCTCCG+GGG | - | chr4_1:62784880-62784899 | Msa0562720:intron | 55.0% | |
| !! | GGGTAGAAGCATCAGTGCCT+TGG | - | chr4_1:62784901-62784920 | Msa0562720:intron | 55.0% |
| GATGTCGAATGCAAGCTGGC+TGG | - | chr4_1:62784930-62784949 | Msa0562720:intron | 55.0% | |
| GCTGTCATCGTTGGACCTCT+AGG | - | chr4_1:62785683-62785702 | Msa0562720:three_prime_UTR | 55.0% | |
| !! | TCATGGTAGGGAGTGCCTAG+AGG | + | chr4_1:62785701-62785720 | None:intergenic | 55.0% |
| CTAGGCACTCCCTACCATGA+CGG | - | chr4_1:62785701-62785720 | Msa0562720:three_prime_UTR | 55.0% | |
| ! | GGAACTGCAGGGTACTTTGC+AGG | + | chr4_1:62785752-62785771 | None:intergenic | 55.0% |
| ACTACCACTCAGGTGGCTTG+AGG | - | chr4_1:62785862-62785881 | Msa0562720:intron | 55.0% | |
| TTAGCCTCAAGCCACCTGAG+TGG | + | chr4_1:62785869-62785888 | None:intergenic | 55.0% | |
| ! | ATCGTGCTGATGAGGGGCAA+AGG | - | chr4_1:62786066-62786085 | Msa0562720:three_prime_UTR | 55.0% |
| TGAGGGGCAAAGGAGATCCA+AGG | - | chr4_1:62786076-62786095 | Msa0562720:intron | 55.0% | |
| CCTCAAAAGGCTGCAGGTGA+AGG | + | chr4_1:62787651-62787670 | None:intergenic | 55.0% | |
| ! | CCTTCACCTGCAGCCTTTTG+AGG | - | chr4_1:62787648-62787667 | Msa0562720:intron | 55.0% |
| TTGCGGGACATTTCCGCCTA+AGG | - | chr4_1:62787677-62787696 | Msa0562720:intron | 55.0% | |
| TGCGGGACATTTCCGCCTAA+GGG | - | chr4_1:62787678-62787697 | Msa0562720:intron | 55.0% | |
| GTATGTTCCTCGCCCTTAGG+CGG | + | chr4_1:62787693-62787712 | None:intergenic | 55.0% | |
| GGTCCCAGGCTGGAAGTTTA+TGG | - | chr4_1:62787995-62788014 | Msa0562720:intron | 55.0% | |
| GACGACGACGCCAGAATTGG+GGG | + | chr4_1:62783525-62783544 | None:intergenic | 60.0% | |
| TGGGTTCCACAAGGCTCGAG+GGG | - | chr4_1:62784354-62784373 | Msa0562720:intron | 60.0% | |
| CAATGTGGATCTGCCTCCGG+GGG | - | chr4_1:62784881-62784900 | Msa0562720:intron | 60.0% | |
| ACTGATGCTTCTACCCCCGG+AGG | + | chr4_1:62784897-62784916 | None:intergenic | 60.0% | |
| !! | GGCACTGATGCTTCTACCCC+CGG | + | chr4_1:62784900-62784919 | None:intergenic | 60.0% |
| GACATTTCCGCCTAAGGGCG+AGG | - | chr4_1:62787683-62787702 | Msa0562720:intron | 60.0% | |
| TATGCTGAGGGGGGACCAGT+TGG | - | chr4_1:62787730-62787749 | Msa0562720:intron | 60.0% | |
| AACCCAGGTGTGAAGGTCCC+AGG | - | chr4_1:62787981-62788000 | Msa0562720:intron | 60.0% | |
| AGCCTGGGACCTTCACACCT+GGG | + | chr4_1:62787986-62788005 | None:intergenic | 60.0% | |
| TGCTTCAGCCGCAGAGACGC+AGG | - | chr4_1:62785088-62785107 | Msa0562720:intron | 65.0% | |
| CAGCCTGGGACCTTCACACC+TGG | + | chr4_1:62787987-62788006 | None:intergenic | 65.0% | |
| CAGGTGTGAAGGTCCCAGGC+TGG | - | chr4_1:62787985-62788004 | Msa0562720:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 62783438 | 62788284 | 62783438 | ID=Msa0562720;Name=Msa0562720 |
| chr4_1 | mRNA | 62783438 | 62788284 | 62783438 | ID=Msa0562720-mRNA-1;Parent=Msa0562720;Name=Msa0562720-mRNA-1;_AED=0.02;_eAED=0.02;_QI=59|1|1|1|1|0.8|5|1212|193 |
| chr4_1 | exon | 62783438 | 62784061 | 62783438 | ID=Msa0562720-mRNA-1:exon:19829;Parent=Msa0562720-mRNA-1 |
| chr4_1 | exon | 62785556 | 62785867 | 62785556 | ID=Msa0562720-mRNA-1:exon:19828;Parent=Msa0562720-mRNA-1 |
| chr4_1 | exon | 62785947 | 62786086 | 62785947 | ID=Msa0562720-mRNA-1:exon:19827;Parent=Msa0562720-mRNA-1 |
| chr4_1 | exon | 62786447 | 62787089 | 62786447 | ID=Msa0562720-mRNA-1:exon:19826;Parent=Msa0562720-mRNA-1 |
| chr4_1 | exon | 62788151 | 62788284 | 62788151 | ID=Msa0562720-mRNA-1:exon:19825;Parent=Msa0562720-mRNA-1 |
| chr4_1 | five_prime_UTR | 62788226 | 62788284 | 62788226 | ID=Msa0562720-mRNA-1:five_prime_utr;Parent=Msa0562720-mRNA-1 |
| chr4_1 | CDS | 62788151 | 62788225 | 62788151 | ID=Msa0562720-mRNA-1:cds;Parent=Msa0562720-mRNA-1 |
| chr4_1 | CDS | 62786583 | 62787089 | 62786583 | ID=Msa0562720-mRNA-1:cds;Parent=Msa0562720-mRNA-1 |
| chr4_1 | three_prime_UTR | 62786447 | 62786582 | 62786447 | ID=Msa0562720-mRNA-1:three_prime_utr;Parent=Msa0562720-mRNA-1 |
| chr4_1 | three_prime_UTR | 62785947 | 62786086 | 62785947 | ID=Msa0562720-mRNA-1:three_prime_utr;Parent=Msa0562720-mRNA-1 |
| chr4_1 | three_prime_UTR | 62785556 | 62785867 | 62785556 | ID=Msa0562720-mRNA-1:three_prime_utr;Parent=Msa0562720-mRNA-1 |
| chr4_1 | three_prime_UTR | 62783438 | 62784061 | 62783438 | ID=Msa0562720-mRNA-1:three_prime_utr;Parent=Msa0562720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
