AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0563270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0563270 MtrunA17_Chr8g0377151 94.654 767 15 4 1 741 1 767 0.0 1476
Msa0563270 MtrunA17_Chr3g0122721 75.423 769 158 9 1 741 1 766 0.0 1136
Msa0563270 MtrunA17_Chr5g0404311 29.452 730 446 15 5 686 5 713 7.80e-86 287
Msa0563270 MtrunA17_Chr8g0373031 29.577 710 435 12 19 683 19 708 3.36e-82 277
Msa0563270 MtrunA17_Chr4g0031431 24.925 666 398 18 54 701 60 641 2.31e-39 155
Msa0563270 MtrunA17_Chr7g0248251 25.449 668 386 20 38 684 66 642 1.36e-38 152
Msa0563270 MtrunA17_Chr7g0237931 26.852 648 351 25 54 682 62 605 3.87e-36 144
Msa0563270 MtrunA17_Chr5g0437411 25.292 684 407 23 43 684 64 685 1.13e-34 140
Msa0563270 MtrunA17_Chr1g0199321 27.765 425 247 11 280 690 248 626 2.58e-34 139
Msa0563270 MtrunA17_Chr4g0044411 26.383 470 270 13 246 684 224 648 1.11e-32 134
Msa0563270 MtrunA17_Chr1g0183781 37.269 271 158 8 419 686 455 716 1.42e-32 134
Msa0563270 MtrunA17_Chr1g0183781 45.070 71 27 2 276 335 239 308 9.47e-13 72.0
Msa0563270 MtrunA17_Chr2g0284461 26.824 425 249 12 280 684 293 675 2.18e-32 134
Msa0563270 MtrunA17_Chr7g0261371 33.442 308 192 8 388 690 495 794 1.28e-29 125
Msa0563270 MtrunA17_Chr7g0261371 43.038 79 33 2 276 343 239 316 2.92e-14 76.6
Msa0563270 MtrunA17_Chr1g0149941 27.336 289 193 5 406 683 176 458 1.38e-27 118
Msa0563270 MtrunA17_Chr3g0137061 27.616 344 223 9 387 719 95 423 3.26e-27 116
Msa0563270 MtrunA17_Chr1g0155261 33.838 198 124 3 11 203 5 200 2.18e-26 108
Msa0563270 MtrunA17_Chr2g0290151 34.182 275 172 7 419 691 190 457 5.00e-26 112
Msa0563270 MtrunA17_Chr1g0152561 32.453 265 168 6 425 686 82 338 3.36e-24 104
Msa0563270 MtrunA17_Chr4g0013091 24.368 673 378 26 48 684 121 698 3.92e-24 108
Msa0563270 MtrunA17_Chr3g0106931 33.696 276 169 7 419 690 568 833 9.54e-23 103
Msa0563270 MtrunA17_Chr3g0106931 39.000 100 49 2 280 368 234 332 1.49e-13 74.7
Msa0563270 MtrunA17_Chr5g0429231 33.103 290 182 7 410 692 41 325 1.15e-22 100
Msa0563270 MtrunA17_Chr7g0275081 26.380 326 171 10 279 581 78 357 8.13e-20 93.2
Msa0563270 MtrunA17_Chr6g0449461 30.252 238 161 4 451 683 44 281 1.29e-19 90.9
Msa0563270 MtrunA17_Chr3g0134761 31.136 273 177 7 425 692 72 338 2.43e-18 87.0
Msa0563270 MtrunA17_Chr7g0234671 23.583 441 255 17 261 679 66 446 6.60e-18 87.4
Msa0563270 MtrunA17_Chr3g0111451 32.386 176 115 3 520 693 155 328 2.05e-17 85.1
Msa0563270 MtrunA17_Chr4g0059201 25.592 422 262 9 278 683 318 703 2.35e-17 86.7
Msa0563270 MtrunA17_Chr2g0283691 27.143 280 187 6 415 687 97 366 1.34e-15 80.1
Msa0563270 MtrunA17_Chr5g0435041 29.577 213 144 4 475 683 87 297 1.61e-14 76.3
Msa0563270 MtrunA17_Chr5g0413681 40.698 86 40 1 278 352 279 364 7.18e-14 75.5
Msa0563270 MtrunA17_Chr1g0198984 46.552 58 31 0 287 344 7 64 1.92e-13 67.4
Msa0563270 MtrunA17_Chr3g0118001 26.354 277 184 8 418 683 219 486 9.02e-13 71.6
Msa0563270 MtrunA17_Chr5g0420471 33.673 98 48 3 273 353 19 116 4.46e-12 68.9
Msa0563270 MtrunA17_Chr3g0110121 35.165 91 42 2 280 353 37 127 8.65e-12 68.2
Msa0563270 MtrunA17_Chr6g0479261 27.586 174 96 6 273 416 19 192 1.55e-11 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0563270 AT1G24330.1 62.821 780 240 13 2 740 1 771 0.0 937
Msa0563270 AT1G24330.2 62.821 780 240 13 2 740 1 771 0.0 937
Msa0563270 AT1G67530.2 63.052 793 228 15 2 740 1 782 0.0 919
Msa0563270 AT1G67530.1 63.052 793 228 15 2 740 1 782 0.0 919
Msa0563270 AT1G67530.4 63.052 793 228 15 2 740 1 782 0.0 919
Msa0563270 AT1G27910.1 61.844 781 244 13 2 741 1 768 0.0 916
Msa0563270 AT1G67530.3 65.625 512 133 8 2 479 1 503 0.0 627
Msa0563270 AT3G46510.1 25.108 697 420 22 1 679 12 624 3.08e-40 158
Msa0563270 AT5G67340.1 29.053 475 256 13 280 687 241 701 3.03e-38 152
Msa0563270 AT5G67340.2 29.053 475 256 13 280 687 241 701 3.03e-38 152
Msa0563270 AT3G54850.1 29.904 418 236 10 280 684 249 622 6.56e-36 144
Msa0563270 AT2G28830.1 26.340 429 263 9 267 682 172 560 1.72e-34 139
Msa0563270 AT4G36550.1 27.469 324 191 4 19 342 14 293 2.64e-34 140
Msa0563270 AT1G23030.1 26.859 417 244 9 280 684 242 609 4.84e-33 135
Msa0563270 AT1G71020.2 26.603 421 255 11 280 687 96 475 1.31e-31 129
Msa0563270 AT5G42340.1 24.451 638 361 18 66 682 117 654 4.31e-31 130
Msa0563270 AT1G71020.1 26.366 421 256 10 280 687 244 623 4.39e-31 129
Msa0563270 AT2G23140.3 33.442 308 186 9 389 686 332 630 2.30e-30 127
Msa0563270 AT2G23140.3 41.758 91 41 2 285 364 47 136 2.88e-14 77.0
Msa0563270 AT2G23140.5 33.442 308 186 9 389 686 332 630 2.30e-30 127
Msa0563270 AT2G23140.5 41.758 91 41 2 285 364 47 136 2.88e-14 77.0
Msa0563270 AT2G23140.1 33.442 308 186 9 389 686 524 822 7.86e-30 127
Msa0563270 AT2G23140.1 41.758 91 41 2 285 364 239 328 3.16e-14 77.0
Msa0563270 AT2G23140.2 33.442 308 186 9 389 686 521 819 8.10e-30 127
Msa0563270 AT2G23140.2 41.758 91 41 2 285 364 236 325 3.29e-14 77.0
Msa0563270 AT2G23140.4 33.442 308 186 9 389 686 521 819 8.10e-30 127
Msa0563270 AT2G23140.4 41.758 91 41 2 285 364 236 325 3.29e-14 77.0
Msa0563270 AT1G29340.1 27.021 433 251 15 280 692 306 693 8.46e-27 117
Msa0563270 AT4G31890.3 26.950 282 190 6 412 683 153 428 5.04e-24 107
Msa0563270 AT4G31890.2 26.950 282 190 6 412 683 153 428 5.04e-24 107
Msa0563270 AT4G31890.1 26.950 282 190 6 412 683 153 428 5.04e-24 107
Msa0563270 AT5G01830.1 23.099 684 376 24 59 707 96 664 1.02e-23 107
Msa0563270 AT3G54790.3 31.724 290 186 8 400 686 471 751 1.74e-23 106
Msa0563270 AT3G54790.3 43.421 76 31 2 276 340 236 310 3.10e-12 70.5
Msa0563270 AT3G54790.1 31.724 290 186 8 400 686 471 751 1.74e-23 106
Msa0563270 AT3G54790.1 43.421 76 31 2 276 340 236 310 3.10e-12 70.5
Msa0563270 AT3G54790.2 31.724 290 186 8 400 686 435 715 1.83e-23 106
Msa0563270 AT3G54790.2 42.308 78 33 2 276 342 200 276 2.08e-12 71.2
Msa0563270 AT3G07360.1 25.822 426 247 13 280 684 75 452 3.43e-23 103
Msa0563270 AT2G25130.1 26.493 268 184 5 425 683 132 395 8.01e-23 102
Msa0563270 AT3G01400.1 33.459 266 164 7 425 686 86 342 1.14e-22 100
Msa0563270 AT1G60190.1 25.170 441 253 15 277 687 276 669 2.75e-21 99.4
Msa0563270 AT5G58680.1 32.707 266 167 8 425 686 84 341 4.10e-20 93.2
Msa0563270 AT4G16490.1 31.047 277 180 8 419 691 200 469 9.56e-20 93.6
Msa0563270 AT3G03440.1 32.589 224 144 6 475 693 134 355 3.14e-19 91.3
Msa0563270 AT5G14510.1 31.933 238 155 5 451 683 44 279 9.36e-19 88.6
Msa0563270 AT5G62560.1 28.897 263 175 6 426 683 258 513 2.27e-16 83.6
Msa0563270 AT4G12710.1 30.824 279 181 8 419 689 62 336 2.59e-16 82.4
Msa0563270 AT2G27430.1 25.287 348 242 9 350 686 19 359 1.04e-15 80.9
Msa0563270 AT4G21350.1 24.519 416 241 12 280 679 6 364 4.98e-15 78.2
Msa0563270 AT1G08315.1 24.126 286 185 9 419 681 24 300 5.01e-12 68.2

Find 206 sgRNAs with CRISPR-Local

Find 405 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTTGCCTTCTCAAATTTA+AGG 0.130107 4_1:+63599784 None:intergenic
TCCCCTCAGTCAAGACTTTC+AGG 0.152419 4_1:+63598519 None:intergenic
CCCGGCTCCATATTATTATT+TGG 0.171348 4_1:+63599001 None:intergenic
ATTATTTGGCTTGAAATTAA+AGG 0.196739 4_1:+63599015 None:intergenic
ATCTCGAAGAATCACAAATT+AGG 0.224495 4_1:+63601515 None:intergenic
CACTTCTGTTGCACAAAATT+AGG 0.233677 4_1:+63596994 None:intergenic
CAGTGCATTGGCTTCCATAT+TGG 0.245325 4_1:-63597060 Msa0563270:CDS
GTACAGGCCTGTGTAATTTC+TGG 0.253290 4_1:-63596573 Msa0563270:three_prime_UTR
TACATAAGTTGAAGAGAAAT+TGG 0.260945 4_1:+63598944 None:intergenic
TCAGAGGAATATGGGGAAAA+TGG 0.272181 4_1:-63598593 Msa0563270:CDS
GATTGCAATGTTGCTCCTTT+TGG 0.275655 4_1:-63596617 Msa0563270:three_prime_UTR
ATCGCCAACTTGCTTCTCTA+AGG 0.278844 4_1:+63599408 None:intergenic
TTTCAAGCCAAATAATAATA+TGG 0.280477 4_1:-63599008 Msa0563270:CDS
ATTTCTAACACTAATTCTTA+TGG 0.282887 4_1:-63597416 Msa0563270:CDS
TCTCGAAGAATCACAAATTA+GGG 0.293281 4_1:+63601516 None:intergenic
AGATGTATCTCAGAGGAATA+TGG 0.299470 4_1:-63598602 Msa0563270:CDS
AGAACGTGTTGAGTTGAGTT+TGG 0.305145 4_1:+63601566 None:intergenic
GACTCCTAATTACTGTGTTA+AGG 0.315603 4_1:-63598804 Msa0563270:CDS
TTGGAATCGGAGAACGAGTT+TGG 0.315650 4_1:+63601585 None:intergenic
TAGTTAAGATCAAGTGATTC+TGG 0.325149 4_1:+63598728 None:intergenic
AGTGATTCTGGAGGGCCTTC+AGG 0.326651 4_1:+63598740 None:intergenic
GCAATGATGAAGAACATTCT+TGG 0.330622 4_1:+63600002 None:intergenic
TGAAAGTAAGTATGGAATAT+TGG 0.344117 4_1:+63597226 None:intergenic
ATTGGACACCTTAACTCTTC+TGG 0.350883 4_1:+63598962 None:intergenic
ATTGTGATGCAGGCTGTAAC+TGG 0.351222 4_1:-63599819 Msa0563270:intron
TTCAGATGACACTGATTCTC+AGG 0.354455 4_1:-63599137 Msa0563270:CDS
TCCTTGTTCTCCCACTGTCC+AGG 0.357343 4_1:-63599107 Msa0563270:CDS
AGACCCTTAACACAGTAATT+AGG 0.360195 4_1:+63598800 None:intergenic
GACACTGATTCTCAGGGTTC+TGG 0.365536 4_1:-63599130 Msa0563270:CDS
ACTCCTAATTACTGTGTTAA+GGG 0.366580 4_1:-63598803 Msa0563270:CDS
ATGCCAGATGAAAGTAAGTA+TGG 0.370861 4_1:+63597218 None:intergenic
ATTCCATACTTACTTTCATC+TGG 0.371568 4_1:-63597221 Msa0563270:CDS
CAGGAGTAAAACTGGAATTC+AGG 0.381494 4_1:-63600058 Msa0563270:CDS
CTTTCATCTGGCATTGTTAA+CGG 0.383716 4_1:-63597209 Msa0563270:CDS
GCCAATGCACTGATGAGTTC+AGG 0.386078 4_1:+63597071 None:intergenic
TCTGGAGGGCCTTCAGGAAT+AGG 0.387116 4_1:+63598746 None:intergenic
AAAAGGTTTGCATAGAGAAA+TGG 0.391144 4_1:-63598886 Msa0563270:intron
GAGCTCCTCAGTGTCCAATA+TGG 0.394204 4_1:+63597046 None:intergenic
ATAAACTATCAATTCACATT+TGG 0.395244 4_1:+63596356 None:intergenic
CTTGTCCCTTTCTGTTCCCA+AGG 0.396113 4_1:-63596641 Msa0563270:three_prime_UTR
GCTAGGCCCAGGAGTAAAAC+TGG 0.403148 4_1:-63600066 Msa0563270:CDS
TGAAAAGAATTTGATTGCTC+AGG 0.403494 4_1:-63598363 Msa0563270:CDS
GCTAGTTGGTGTGAACAAAA+TGG 0.405363 4_1:-63598773 Msa0563270:CDS
TCCACAATCCATTGGATGTC+AGG 0.411988 4_1:-63599721 Msa0563270:intron
TCTTGACTGAGGGGAACAAT+TGG 0.414078 4_1:-63598511 Msa0563270:CDS
TGCTTTGGCCGGATATTGAT+AGG 0.416459 4_1:-63596401 Msa0563270:three_prime_UTR
AGAAACTTATTGACAGGGCT+CGG 0.417345 4_1:-63599246 Msa0563270:CDS
TGATTTCCCTTGCAGTTACA+TGG 0.422624 4_1:-63600156 Msa0563270:intron
ACTCATGCCAATCATAGGTT+TGG 0.427349 4_1:+63597349 None:intergenic
TTAAGGGTCTTGTTGCTAGT+TGG 0.427371 4_1:-63598787 Msa0563270:CDS
CAGATTGAAGGAGCTGGGTT+AGG 0.429341 4_1:+63597312 None:intergenic
TCAAGTTGGAAGGGAGGAAA+TGG 0.431515 4_1:-63597102 Msa0563270:CDS
AATCCCACGCTTGCTTTGGC+CGG 0.436565 4_1:-63596412 Msa0563270:intron
CACCAGGCTGCTACTAGACT+TGG 0.437922 4_1:-63599313 Msa0563270:CDS
ACCTATGATTGGCATGAGTC+AGG 0.440522 4_1:-63597345 Msa0563270:CDS
CATAGAGGTTTCATTTCAGC+AGG 0.440717 4_1:+63596783 None:intergenic
TGATCTTAACTACTGGAGAT+TGG 0.443874 4_1:-63598717 Msa0563270:CDS
TGCAAATCCAACACTTGGAT+TGG 0.444964 4_1:+63596502 None:intergenic
AATTTAGCCACTTCTCAAGT+TGG 0.452449 4_1:-63597116 Msa0563270:CDS
CTCTACCACCAGAAGAGTTA+AGG 0.453206 4_1:-63598970 Msa0563270:CDS
ATCCACTGTCCGTGTAAACT+CGG 0.456937 4_1:+63600626 None:intergenic
GATGTATCTCAGAGGAATAT+GGG 0.456946 4_1:-63598601 Msa0563270:CDS
GCCAAATAATAATATGGAGC+CGG 0.457280 4_1:-63599002 Msa0563270:CDS
TTGTCCCTTTCTGTTCCCAA+GGG 0.461345 4_1:-63596640 Msa0563270:three_prime_UTR
ATGAAGTGGTAGAACAGTTA+AGG 0.462738 4_1:-63598478 Msa0563270:CDS
TTGGTATCAATATCAGTGAA+TGG 0.463720 4_1:-63596927 Msa0563270:CDS
TTTAATTGCATTGCTCCAGC+AGG 0.464096 4_1:-63599383 Msa0563270:CDS
GCCTGACTCATGCCAATCAT+AGG 0.464879 4_1:+63597344 None:intergenic
CTCTAAAGAAACTTATTGAC+AGG 0.465043 4_1:-63599252 Msa0563270:CDS
CACTGAGGAGCTCGAAGTGC+AGG 0.465141 4_1:-63597036 Msa0563270:CDS
CCTTGTTCTCCCACTGTCCA+GGG 0.474603 4_1:-63599106 Msa0563270:CDS
CCAAATAATAATATGGAGCC+GGG 0.478045 4_1:-63599001 Msa0563270:CDS
TGTACATCTCTTCTTCGCTC+TGG 0.478266 4_1:+63596591 None:intergenic
GAGTAGCTCTTGCTGAAAGA+AGG 0.479770 4_1:-63599276 Msa0563270:CDS
AATCACTTGATCTTAACTAC+TGG 0.480293 4_1:-63598724 Msa0563270:CDS
CGTTAGAAGCAGCTAGGCCC+AGG 0.480943 4_1:-63600077 Msa0563270:CDS
ATGTTCTGACATGGTCCTGC+AGG 0.483164 4_1:-63596967 Msa0563270:CDS
TGTTGAGTTGAGTTTGGAAT+CGG 0.484414 4_1:+63601572 None:intergenic
GAGATACATCTCTCTTCTAA+AGG 0.485934 4_1:+63598614 None:intergenic
ACAGACAAATCACTAGTTTC+AGG 0.485994 4_1:+63596810 None:intergenic
GCGCACTGCCTATCAATATC+CGG 0.492909 4_1:+63596393 None:intergenic
AAGGTCTGATTATGACCAAC+GGG 0.492949 4_1:+63599064 None:intergenic
CATAGTCAGATTGAAGGAGC+TGG 0.493779 4_1:+63597306 None:intergenic
TAGAAAGATTATAGAGAGCA+TGG 0.494495 4_1:+63597258 None:intergenic
CTCCCTTCCAACTTGAGAAG+TGG 0.495430 4_1:+63597109 None:intergenic
TATTGACAGGGCTCGGGCTG+AGG 0.496241 4_1:-63599239 Msa0563270:CDS
GATATTGTTCCACAATCCAT+TGG 0.497913 4_1:-63599729 Msa0563270:CDS
CCCTGGACAGTGGGAGAACA+AGG 0.500020 4_1:+63599106 None:intergenic
TCCTGAACTCATCAGTGCAT+TGG 0.503926 4_1:-63597072 Msa0563270:CDS
TAGAGAAATGGTTCGGTGAT+GGG 0.503941 4_1:-63598874 Msa0563270:CDS
TGGTATCAATATCAGTGAAT+GGG 0.505268 4_1:-63596926 Msa0563270:CDS
GAAGAAGCCAAACCTATGAT+TGG 0.507167 4_1:-63597356 Msa0563270:CDS
TCATAGGTTTGGCTTCTTCG+AGG 0.507968 4_1:+63597360 None:intergenic
ATGTTCATTGCATGTAGCCT+TGG 0.508970 4_1:-63600031 Msa0563270:CDS
AGAGCGAAGAAGAGATGTAC+AGG 0.511337 4_1:-63596589 Msa0563270:three_prime_UTR
AGCAACATTGCAATCCCCTT+GGG 0.512919 4_1:+63596625 None:intergenic
GTTAATTACCTGACATCCAA+TGG 0.513832 4_1:+63599713 None:intergenic
TGCTGTTCCGACAGCAGCGA+CGG 0.514000 4_1:-63596866 Msa0563270:CDS
GAATGTCATAGTCAGATTGA+AGG 0.515270 4_1:+63597300 None:intergenic
GAAACTTATTGACAGGGCTC+GGG 0.515597 4_1:-63599245 Msa0563270:CDS
TAATATGGAGCCGGGGCAGA+TGG 0.516579 4_1:-63598993 Msa0563270:CDS
TCGCCAACTTGCTTCTCTAA+GGG 0.517933 4_1:+63599409 None:intergenic
TTCCTGAAAGTCTTGACTGA+GGG 0.519905 4_1:-63598521 Msa0563270:CDS
TCAATAGATCCCTGGACAGT+GGG 0.522848 4_1:+63599097 None:intergenic
CACTGTCCAGGGATCTATTG+AGG 0.525708 4_1:-63599095 Msa0563270:CDS
TCTTCGCTCTGGAAACCAAA+AGG 0.528718 4_1:+63596602 None:intergenic
AATCTCTCCAATCCAAGTGT+TGG 0.530064 4_1:-63596509 Msa0563270:three_prime_UTR
CGGACAGTGGATTTGAATGA+TGG 0.533198 4_1:-63600615 Msa0563270:exon
TAGCCACTTCTCAAGTTGGA+AGG 0.533628 4_1:-63597112 Msa0563270:CDS
GAGCAACATTGCAATCCCCT+TGG 0.535088 4_1:+63596624 None:intergenic
CTCAATAGATCCCTGGACAG+TGG 0.536102 4_1:+63599096 None:intergenic
AACATTCTTGGCTTTCTCCA+AGG 0.536331 4_1:+63600014 None:intergenic
AAGAATCACAAATTAGGGGT+TGG 0.536609 4_1:+63601521 None:intergenic
AGCCACTTCTCAAGTTGGAA+GGG 0.540257 4_1:-63597111 Msa0563270:CDS
AACAGTTAAGGCTGTTGCTG+AGG 0.542666 4_1:-63598466 Msa0563270:CDS
TGCTCAGGAAAGCGGAGCAA+TGG 0.543692 4_1:-63598348 Msa0563270:CDS
ACAATCCCTTCTTGTAGACC+AGG 0.544127 4_1:-63597183 Msa0563270:CDS
CTAGACATCGACTTACATAG+AGG 0.544849 4_1:+63596768 None:intergenic
TGTTCTCCTTAAATTTGAGA+AGG 0.545401 4_1:-63599790 Msa0563270:CDS
AATCCCCTTGGGAACAGAAA+GGG 0.545971 4_1:+63596636 None:intergenic
GTTTGCATAGAGAAATGGTT+CGG 0.546006 4_1:-63598881 Msa0563270:CDS
TGTGATGCAGGCTGTAACTG+GGG 0.546165 4_1:-63599817 Msa0563270:intron
TACCATCCTCAATAGATCCC+TGG 0.546483 4_1:+63599089 None:intergenic
ATAGAGAAATGGTTCGGTGA+TGG 0.547088 4_1:-63598875 Msa0563270:CDS
GGTGGTAGAGCCATCTGCCC+CGG 0.548419 4_1:+63598983 None:intergenic
CAATCCCCTTGGGAACAGAA+AGG 0.553839 4_1:+63596635 None:intergenic
GCTGTTCCGACAGCAGCGAC+GGG 0.554255 4_1:-63596865 Msa0563270:CDS
GGAAGGTGTTATACCTGCAT+TGG 0.556529 4_1:-63596946 Msa0563270:CDS
CAGGTATAACACCTTCCTGC+AGG 0.556638 4_1:+63596952 None:intergenic
ACTGATATTGATACCAATGC+AGG 0.557153 4_1:+63596933 None:intergenic
ACCTGACATCCAATGGATTG+TGG 0.557250 4_1:+63599720 None:intergenic
TTAGGAGTCAAGTAAAGATG+TGG 0.557266 4_1:+63598818 None:intergenic
TGAAAGTATATCTGCACAAG+AGG 0.559350 4_1:-63598567 Msa0563270:CDS
TTGTGATGCAGGCTGTAACT+GGG 0.561802 4_1:-63599818 Msa0563270:intron
ATTCATCCCGTCGCTGCTGT+CGG 0.562465 4_1:+63596859 None:intergenic
CGCCAACTTGCTTCTCTAAG+GGG 0.563209 4_1:+63599410 None:intergenic
TGAGGGATGATGAGGAAGCT+AGG 0.563422 4_1:-63598448 Msa0563270:CDS
ATTTAGTTCCCGAGTTTACA+CGG 0.564537 4_1:-63600635 Msa0563270:five_prime_UTR
CATCACCCTGGTCTACAAGA+AGG 0.564678 4_1:+63597177 None:intergenic
AAGTAAGTATGGAATATTGG+AGG 0.567972 4_1:+63597229 None:intergenic
ACCTAGCTGTGAATAACGAC+AGG 0.568061 4_1:-63598316 Msa0563270:intron
ACCTGTCGTTATTCACAGCT+AGG 0.568867 4_1:+63598315 None:intergenic
ATTTGCTGTTAGTGATGCCA+AGG 0.569600 4_1:-63600564 Msa0563270:intron
CTCTTGAAGATAGTCTCAGA+CGG 0.573014 4_1:-63599758 Msa0563270:CDS
TTCCAAGTCTAGTAGCAGCC+TGG 0.574725 4_1:+63599311 None:intergenic
AGAGGTTTCATTTCAGCAGG+TGG 0.576487 4_1:+63596786 None:intergenic
GAGTCAAGTAAAGATGTGGA+AGG 0.576545 4_1:+63598822 None:intergenic
AGTAGCTCTTGCTGAAAGAA+GGG 0.576631 4_1:-63599275 Msa0563270:CDS
ACAGTTAAGGCTGTTGCTGA+GGG 0.576810 4_1:-63598465 Msa0563270:CDS
AGTGTGTAGTAAACTTTACC+TGG 0.580501 4_1:-63599977 Msa0563270:intron
ATCACCCTGGTCTACAAGAA+GGG 0.582312 4_1:+63597178 None:intergenic
TCCACTGTCCGTGTAAACTC+GGG 0.583928 4_1:+63600627 None:intergenic
CTTGGGAACAGAAAGGGACA+AGG 0.584532 4_1:+63596642 None:intergenic
ATAGTCAGATTGAAGGAGCT+GGG 0.584538 4_1:+63597307 None:intergenic
ATTGAGGATGGTATTCCCGT+TGG 0.584967 4_1:-63599079 Msa0563270:CDS
AAGCACTTGCACGCAACGCA+AGG 0.585674 4_1:+63601610 None:intergenic
TCGATGTCTAGAAGAAAGAC+CGG 0.586794 4_1:-63596756 Msa0563270:CDS
TCAGATGACACTGATTCTCA+GGG 0.587376 4_1:-63599136 Msa0563270:CDS
AATGGAATTCCTATTCCTGA+AGG 0.590428 4_1:-63598755 Msa0563270:CDS
AATTTGATTGCTCAGGAAAG+CGG 0.590955 4_1:-63598356 Msa0563270:CDS
CAAGTTGAAGGGTGTCAAAG+TGG 0.592911 4_1:-63598639 Msa0563270:intron
CTGAGGGGAACAATTGGAAG+AGG 0.592953 4_1:-63598505 Msa0563270:CDS
TTCCTTCGTTAGAAGCAGCT+AGG 0.593177 4_1:-63600083 Msa0563270:CDS
CTCCAACAAAGATAAAACTC+CGG 0.596976 4_1:+63597445 None:intergenic
TCCCGAGTTTACACGGACAG+TGG 0.600624 4_1:-63600628 Msa0563270:five_prime_UTR
AGTAAGTATGGAATATTGGA+GGG 0.605239 4_1:+63597230 None:intergenic
TCCTGAAAGTCTTGACTGAG+GGG 0.607330 4_1:-63598520 Msa0563270:CDS
GTCCAGGGATCTATTGAGGA+TGG 0.609663 4_1:-63599091 Msa0563270:CDS
ACCAGGGTGATGATTGTACA+TGG 0.613819 4_1:-63597166 Msa0563270:CDS
CACTTCTCAAGTTGGAAGGG+AGG 0.613971 4_1:-63597108 Msa0563270:CDS
TTAATTGCATTGCTCCAGCA+GGG 0.616203 4_1:-63599382 Msa0563270:CDS
GGCCTAGCTGCTTCTAACGA+AGG 0.620528 4_1:+63600081 None:intergenic
CAGTGAATGGGACCCCAAGA+GGG 0.620842 4_1:-63596914 Msa0563270:CDS
TTGGGAACAGAAAGGGACAA+GGG 0.622915 4_1:+63596643 None:intergenic
TGTCCCTTTCTGTTCCCAAG+GGG 0.623473 4_1:-63596639 Msa0563270:three_prime_UTR
TCTTGAAGATAGTCTCAGAC+GGG 0.625553 4_1:-63599757 Msa0563270:CDS
AAAGGTCTGATTATGACCAA+CGG 0.626527 4_1:+63599063 None:intergenic
TTGGAAGAGGAAATATGAAG+TGG 0.626950 4_1:-63598492 Msa0563270:CDS
TGAAGATAGTCTCAGACGGG+TGG 0.627364 4_1:-63599754 Msa0563270:CDS
TAAGATCAAGTGATTCTGGA+GGG 0.629963 4_1:+63598732 None:intergenic
ATGTATCTCAGAGGAATATG+GGG 0.630653 4_1:-63598600 Msa0563270:CDS
GACCCCTTAGAGAAGCAAGT+TGG 0.632084 4_1:-63599412 Msa0563270:CDS
GGCTTCCATATTGGACACTG+AGG 0.633819 4_1:-63597051 Msa0563270:CDS
GGACACCTTAACTCTTCTGG+TGG 0.634732 4_1:+63598965 None:intergenic
AAAGAGGGAAATTAGAACCA+AGG 0.637942 4_1:+63601467 None:intergenic
GTGGATTTGAATGATGGATG+TGG 0.638478 4_1:-63600609 Msa0563270:exon
TGGGAACAGAAAGGGACAAG+GGG 0.643266 4_1:+63596644 None:intergenic
ACGGGATGAATCATCTGTTG+AGG 0.646247 4_1:-63596847 Msa0563270:CDS
TCAGTGAATGGGACCCCAAG+AGG 0.646729 4_1:-63596915 Msa0563270:CDS
AAGTGAGCAATGTTCTGACA+TGG 0.649017 4_1:-63596976 Msa0563270:CDS
TCCATGTACAATCATCACCC+TGG 0.652176 4_1:+63597165 None:intergenic
TTTCCTGAAAGTCTTGACTG+AGG 0.652952 4_1:-63598522 Msa0563270:CDS
ACAAAATCCAGAAATTACAC+AGG 0.660363 4_1:+63596566 None:intergenic
AATGATGGATGTGGCCGCTG+AGG 0.660913 4_1:-63600600 Msa0563270:CDS
GGCTGAGGAAGACAAACGAA+AGG 0.663945 4_1:-63599224 Msa0563270:CDS
GCTGTTGCTGAGGGATGATG+AGG 0.669363 4_1:-63598456 Msa0563270:CDS
GACAAATCACTAGTTTCAGG+AGG 0.671009 4_1:+63596813 None:intergenic
CAATCCCTTCTTGTAGACCA+GGG 0.677528 4_1:-63597182 Msa0563270:CDS
TTAAGATCAAGTGATTCTGG+AGG 0.677953 4_1:+63598731 None:intergenic
GTTACATGGACAAATGTGCA+AGG 0.678493 4_1:-63600142 Msa0563270:CDS
AGAAGAGAGATGTATCTCAG+AGG 0.678759 4_1:-63598609 Msa0563270:CDS
CAAATAATAATATGGAGCCG+GGG 0.679408 4_1:-63599000 Msa0563270:CDS
TCTGACATGGTCCTGCAGGA+AGG 0.684180 4_1:-63596963 Msa0563270:CDS
CTCGAAGAATCACAAATTAG+GGG 0.702584 4_1:+63601517 None:intergenic
GAGGGAAATTAGAACCAAGG+AGG 0.716536 4_1:+63601470 None:intergenic
TCTAAAGAAACTTATTGACA+GGG 0.716928 4_1:-63599251 Msa0563270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATAATGATTTAAAGTT+AGG + chr4_1:63596556-63596575 None:intergenic 10.0%
!! GTATGATTATAATTGTTTAA+TGG - chr4_1:63597413-63597432 Msa0563270:CDS 15.0%
!!! TGAAATAAACAATTTAAAAC+AGG + chr4_1:63598322-63598341 None:intergenic 15.0%
!! GATGATTCAAAATTATAAAA+AGG + chr4_1:63599894-63599913 None:intergenic 15.0%
!!! GATAATAAAGAAATGTATTT+TGG - chr4_1:63600218-63600237 Msa0563270:intron 15.0%
!!! GATTTTCTTATTCATTTTCA+TGG - chr4_1:63596460-63596479 Msa0563270:three_prime_UTR 20.0%
!!! ATGATTTAAAGTTAGGTTTA+GGG + chr4_1:63596549-63596568 None:intergenic 20.0%
!!! AATGATTTAAAGTTAGGTTT+AGG + chr4_1:63596550-63596569 None:intergenic 20.0%
!!! TTATTTGAAATAATGCATGA+TGG - chr4_1:63596732-63596751 Msa0563270:CDS 20.0%
!!! CTATTTTGAGAAGAAATTTA+AGG - chr4_1:63596921-63596940 Msa0563270:CDS 20.0%
!!! TTAATTGGGTTTTTTTTTTC+TGG - chr4_1:63596962-63596981 Msa0563270:CDS 20.0%
!! TTAAAGAATCAGAATTTAGA+AGG + chr4_1:63597087-63597106 None:intergenic 20.0%
!! AAACAATTATAATCATACCT+TGG + chr4_1:63597411-63597430 None:intergenic 20.0%
!!! TAATGGTTTGTTTTTTGTTT+TGG - chr4_1:63597430-63597449 Msa0563270:CDS 20.0%
!!! AATGGTTTGTTTTTTGTTTT+GGG - chr4_1:63597431-63597450 Msa0563270:CDS 20.0%
!! AGCTTATGTTAAGATATAAT+TGG - chr4_1:63597508-63597527 Msa0563270:intron 20.0%
!! CTAGAATAAATATAAGAACT+TGG + chr4_1:63597621-63597640 None:intergenic 20.0%
!!! ATTATTTGGCTTGAAATTAA+AGG + chr4_1:63598943-63598962 None:intergenic 20.0%
!! TTTCAAGCCAAATAATAATA+TGG - chr4_1:63598947-63598966 Msa0563270:CDS 20.0%
!!! ATTGCAAATAATATCACTTT+TGG - chr4_1:63599696-63599715 Msa0563270:intron 20.0%
!!! TTGCAAATAATATCACTTTT+GGG - chr4_1:63599697-63599716 Msa0563270:intron 20.0%
!! TTAACACATTATTGCAATAT+TGG + chr4_1:63599787-63599806 None:intergenic 20.0%
!!! TTTTTCAAATATACCAAGAT+GGG + chr4_1:63599980-63599999 None:intergenic 20.0%
!!! ATTTTTCAAATATACCAAGA+TGG + chr4_1:63599981-63600000 None:intergenic 20.0%
!! ATCTTGGTATATTTGAAAAA+TGG - chr4_1:63599980-63599999 Msa0563270:CDS 20.0%
!!! ACATACTTTTGTTTCTTTAT+TGG - chr4_1:63600296-63600315 Msa0563270:intron 20.0%
!! ATATTTGGAAAACAAGTTAA+CGG + chr4_1:63600357-63600376 None:intergenic 20.0%
!!! TTATTTCTGTTGAAAAGAAA+GGG + chr4_1:63600473-63600492 None:intergenic 20.0%
!! ATTTCTAACACTAATTCTTA+TGG - chr4_1:63600539-63600558 Msa0563270:intron 20.0%
!! ATAAACTATCAATTCACATT+TGG + chr4_1:63601602-63601621 None:intergenic 20.0%
!!! AGTTTATTTTTAATAGACAG+TGG - chr4_1:63601615-63601634 Msa0563270:five_prime_UTR 20.0%
!!! GTTTATTTTTAATAGACAGT+GGG - chr4_1:63601616-63601635 Msa0563270:five_prime_UTR 20.0%
! CCAATCGAATAAAAAAAAGA+GGG + chr4_1:63596506-63596525 None:intergenic 25.0%
! ACCAATCGAATAAAAAAAAG+AGG + chr4_1:63596507-63596526 None:intergenic 25.0%
!!! GTTGATTATGTTCTGTTTTT+TGG - chr4_1:63596647-63596666 Msa0563270:three_prime_UTR 25.0%
! ATCATCAATAATCAATCCAT+TGG + chr4_1:63596803-63596822 None:intergenic 25.0%
! TGTTGCTAAAGTTTCAAAAT+AGG + chr4_1:63596846-63596865 None:intergenic 25.0%
!!! AATTCTGATTCTTTAAAGCT+CGG - chr4_1:63597091-63597110 Msa0563270:CDS 25.0%
! CAAAGCAGAACAATTATTTA+TGG + chr4_1:63597130-63597149 None:intergenic 25.0%
!!! ACTGATCGTTTTTTATGTTT+TGG - chr4_1:63597237-63597256 Msa0563270:CDS 25.0%
! ATTAAGCAATTATCTTTCGT+TGG - chr4_1:63598064-63598083 Msa0563270:intron 25.0%
! ACATTAATTTATTGTGATGC+AGG - chr4_1:63598126-63598145 Msa0563270:intron 25.0%
! TTAATTGTCAATGTTTAACC+TGG - chr4_1:63598449-63598468 Msa0563270:CDS 25.0%
! TCTAAAGAAACTTATTGACA+GGG - chr4_1:63598704-63598723 Msa0563270:CDS 25.0%
! AAACTCATTTCTGAATAACT+TGG + chr4_1:63598799-63598818 None:intergenic 25.0%
!! TACATAAGTTGAAGAGAAAT+TGG + chr4_1:63599014-63599033 None:intergenic 25.0%
!!! AATAATATCACTTTTGGGAT+CGG - chr4_1:63599702-63599721 Msa0563270:intron 25.0%
!! TAGATCTTTTATCCCAAAAA+TGG + chr4_1:63599756-63599775 None:intergenic 25.0%
!!! ATTTTTGGGATAAAAGATCT+AGG - chr4_1:63599755-63599774 Msa0563270:CDS 25.0%
! TTGCAATAATGTGTTAAACT+TGG - chr4_1:63599790-63599809 Msa0563270:CDS 25.0%
! TGCAATAATGTGTTAAACTT+GGG - chr4_1:63599791-63599810 Msa0563270:CDS 25.0%
! ATGTAGAACTTATTTGTGAT+TGG - chr4_1:63599914-63599933 Msa0563270:intron 25.0%
!! TGGAAAATCAAAACAGTTTT+TGG - chr4_1:63599934-63599953 Msa0563270:intron 25.0%
! AGTTATCCACAAAAAAAAGT+TGG + chr4_1:63600109-63600128 None:intergenic 25.0%
! TAAATTGCACATTGTATGTT+TGG - chr4_1:63600149-63600168 Msa0563270:intron 25.0%
!! ATTGGCTTATATAAACAGAA+AGG - chr4_1:63600314-63600333 Msa0563270:intron 25.0%
!! TGTTTTCCAAATATTGAATG+TGG - chr4_1:63600363-63600382 Msa0563270:intron 25.0%
! TCAAAACTCTACTATATCTT+AGG + chr4_1:63600398-63600417 None:intergenic 25.0%
!!! CTTATTTCTGTTGAAAAGAA+AGG + chr4_1:63600474-63600493 None:intergenic 25.0%
!! CTTTCTTTTCAACAGAAATA+AGG - chr4_1:63600472-63600491 Msa0563270:intron 25.0%
! TGAAAGTAAGTATGGAATAT+TGG + chr4_1:63600732-63600751 None:intergenic 25.0%
TCTCGAAGAATCACAAATTA+GGG + chr4_1:63596442-63596461 None:intergenic 30.0%
ATCTCGAAGAATCACAAATT+AGG + chr4_1:63596443-63596462 None:intergenic 30.0%
!!! CCCTCTTTTTTTTATTCGAT+TGG - chr4_1:63596503-63596522 Msa0563270:three_prime_UTR 30.0%
! AATCAATTTTCATCCTCCAA+TGG - chr4_1:63596784-63596803 Msa0563270:CDS 30.0%
ATCAATAATCAATCCATTGG+AGG + chr4_1:63596800-63596819 None:intergenic 30.0%
!!! TTCCTTTTGAGGTAAAAGTT+TGG - chr4_1:63596877-63596896 Msa0563270:CDS 30.0%
TTAAGGCTATGACAAATCTA+AGG - chr4_1:63596938-63596957 Msa0563270:CDS 30.0%
! TGACAAATCTAAGGCTTAAT+TGG - chr4_1:63596947-63596966 Msa0563270:CDS 30.0%
! GACAAATCTAAGGCTTAATT+GGG - chr4_1:63596948-63596967 Msa0563270:CDS 30.0%
!!! GGGTTTTTTTTTTCTGGATT+TGG - chr4_1:63596968-63596987 Msa0563270:CDS 30.0%
!! TTTTTCTGGATTTGGTTGTA+TGG - chr4_1:63596976-63596995 Msa0563270:CDS 30.0%
CTAAAATCACATGTCAACTT+AGG + chr4_1:63597027-63597046 None:intergenic 30.0%
TAAAGCTCGGTTAATATGTT+TGG - chr4_1:63597104-63597123 Msa0563270:CDS 30.0%
TACAGGATCAAAAAAGTGAA+AGG + chr4_1:63597275-63597294 None:intergenic 30.0%
!!! TTTCACTTTTTTGATCCTGT+AGG - chr4_1:63597274-63597293 Msa0563270:CDS 30.0%
TTATTCTATGCTGTCATTCT+TGG - chr4_1:63597702-63597721 Msa0563270:intron 30.0%
TATTCTATGCTGTCATTCTT+GGG - chr4_1:63597703-63597722 Msa0563270:intron 30.0%
AATGTAAAACGGAGAAACAA+TGG + chr4_1:63597736-63597755 None:intergenic 30.0%
! TTAGAGGGTGTAATGTAAAA+CGG + chr4_1:63597747-63597766 None:intergenic 30.0%
TGTTCTCCTTAAATTTGAGA+AGG - chr4_1:63598165-63598184 Msa0563270:intron 30.0%
ACTTTGCCTTCTCAAATTTA+AGG + chr4_1:63598174-63598193 None:intergenic 30.0%
!! GGAAAAAAGTTTGATGATGA+TGG - chr4_1:63598594-63598613 Msa0563270:CDS 30.0%
! CTCTAAAGAAACTTATTGAC+AGG - chr4_1:63598703-63598722 Msa0563270:CDS 30.0%
! CATATCTTTTGCATCTTATG+AGG - chr4_1:63598766-63598785 Msa0563270:CDS 30.0%
!! TTTTGAAAGTTGTCTCTCAA+AGG + chr4_1:63598913-63598932 None:intergenic 30.0%
AAAAGGTTTGCATAGAGAAA+TGG - chr4_1:63599069-63599088 Msa0563270:CDS 30.0%
ACTCCTAATTACTGTGTTAA+GGG - chr4_1:63599152-63599171 Msa0563270:intron 30.0%
TAGTTAAGATCAAGTGATTC+TGG + chr4_1:63599230-63599249 None:intergenic 30.0%
AATCACTTGATCTTAACTAC+TGG - chr4_1:63599231-63599250 Msa0563270:CDS 30.0%
TGAAAAGAATTTGATTGCTC+AGG - chr4_1:63599592-63599611 Msa0563270:intron 30.0%
! ATCCCAAAAATGGTGATTTT+TGG + chr4_1:63599746-63599765 None:intergenic 30.0%
GCAATAATGTGTTAAACTTG+GGG - chr4_1:63599792-63599811 Msa0563270:CDS 30.0%
! AAAAGGCTCAAATGTACTTT+TGG + chr4_1:63599877-63599896 None:intergenic 30.0%
!! AAATATACCAAGATGGGTTT+TGG + chr4_1:63599974-63599993 None:intergenic 30.0%
CAAACAAAAACAACAAAAGC+CGG + chr4_1:63600060-63600079 None:intergenic 30.0%
!!! AGACATCCAACTTTTTTTTG+TGG - chr4_1:63600100-63600119 Msa0563270:CDS 30.0%
!!! TTGGTTTTAATGACGCATTA+AGG - chr4_1:63600168-63600187 Msa0563270:intron 30.0%
!!! TGGTTTTAATGACGCATTAA+GGG - chr4_1:63600169-63600188 Msa0563270:intron 30.0%
!!! TGGTTTTAATGATGCATCAA+GGG - chr4_1:63600192-63600211 Msa0563270:intron 30.0%
TAGAAAGATTATAGAGAGCA+TGG + chr4_1:63600700-63600719 None:intergenic 30.0%
AGTAAGTATGGAATATTGGA+GGG + chr4_1:63600728-63600747 None:intergenic 30.0%
AAGTAAGTATGGAATATTGG+AGG + chr4_1:63600729-63600748 None:intergenic 30.0%
ATTCCATACTTACTTTCATC+TGG - chr4_1:63600734-63600753 Msa0563270:intron 30.0%
TTGGTATCAATATCAGTGAA+TGG - chr4_1:63601028-63601047 Msa0563270:intron 30.0%
TGGTATCAATATCAGTGAAT+GGG - chr4_1:63601029-63601048 Msa0563270:intron 30.0%
GAAAAAGCTAAAAGGTTTAC+CGG + chr4_1:63601221-63601240 None:intergenic 30.0%
!!! GTAAACCTTTTAGCTTTTTC+TGG - chr4_1:63601221-63601240 Msa0563270:intron 30.0%
ACAAAATCCAGAAATTACAC+AGG + chr4_1:63601392-63601411 None:intergenic 30.0%
AAAAATGCAAATCCAACACT+TGG + chr4_1:63601461-63601480 None:intergenic 30.0%
GATTAAAGTTGAAACACTTG+TGG + chr4_1:63601527-63601546 None:intergenic 30.0%
!! TGTTGAGTTGAGTTTGGAAT+CGG + chr4_1:63596386-63596405 None:intergenic 35.0%
AAGAATCACAAATTAGGGGT+TGG + chr4_1:63596437-63596456 None:intergenic 35.0%
CTCGAAGAATCACAAATTAG+GGG + chr4_1:63596441-63596460 None:intergenic 35.0%
AAAGAGGGAAATTAGAACCA+AGG + chr4_1:63596491-63596510 None:intergenic 35.0%
!!! CGTGTCATTTTTTCCTTTTG+AGG - chr4_1:63596866-63596885 Msa0563270:CDS 35.0%
! GACCAAACTTTTACCTCAAA+AGG + chr4_1:63596882-63596901 None:intergenic 35.0%
!!! CTATTTTAGCTACAACCTAC+AGG + chr4_1:63597292-63597311 None:intergenic 35.0%
! ATTTAGTTCCCGAGTTTACA+CGG - chr4_1:63597320-63597339 Msa0563270:CDS 35.0%
! TAGATTTTCTTCAACCTCAG+CGG + chr4_1:63597372-63597391 None:intergenic 35.0%
TTCGCTAACTAATTGAACGA+AGG + chr4_1:63597568-63597587 None:intergenic 35.0%
CGTTCAATTAGTTAGCGAAT+AGG - chr4_1:63597569-63597588 Msa0563270:intron 35.0%
ATTCTAGCGACAAAGAGAAA+TGG - chr4_1:63597634-63597653 Msa0563270:intron 35.0%
ATTGGTTAGATTGCATTGCA+GGG + chr4_1:63597772-63597791 None:intergenic 35.0%
! TATTGGTTAGATTGCATTGC+AGG + chr4_1:63597773-63597792 None:intergenic 35.0%
ATTTGTCCATGTAACTGCAA+GGG + chr4_1:63597808-63597827 None:intergenic 35.0%
! TGAATTCCAGTTTTACTCCT+GGG + chr4_1:63597898-63597917 None:intergenic 35.0%
GCAATGATGAAGAACATTCT+TGG + chr4_1:63597956-63597975 None:intergenic 35.0%
AGTGTGTAGTAAACTTTACC+TGG - chr4_1:63597978-63597997 Msa0563270:intron 35.0%
! ACTTGCTGATTAAGTTTGCA+AGG - chr4_1:63598026-63598045 Msa0563270:intron 35.0%
! GCAATTATCTTTCGTTGGTT+AGG - chr4_1:63598069-63598088 Msa0563270:intron 35.0%
! CTTTCGTTGGTTAGGTTATT+CGG - chr4_1:63598077-63598096 Msa0563270:intron 35.0%
GATATTGTTCCACAATCCAT+TGG - chr4_1:63598226-63598245 Msa0563270:intron 35.0%
GTTAATTACCTGACATCCAA+TGG + chr4_1:63598245-63598264 None:intergenic 35.0%
! TCATGGGTCTTTTCTTTGTT+TGG - chr4_1:63598279-63598298 Msa0563270:intron 35.0%
!! CATGGGTCTTTTCTTTGTTT+GGG - chr4_1:63598280-63598299 Msa0563270:intron 35.0%
TTTGTTTGGGCATATGAATG+AGG - chr4_1:63598293-63598312 Msa0563270:intron 35.0%
TTGTTTGGGCATATGAATGA+GGG - chr4_1:63598294-63598313 Msa0563270:intron 35.0%
ATAATTGAATGCCACCTTGT+TGG - chr4_1:63598344-63598363 Msa0563270:CDS 35.0%
AATCCAGAATATCACCAACA+AGG + chr4_1:63598361-63598380 None:intergenic 35.0%
!! TGTTGGTGATATTCTGGATT+TGG - chr4_1:63598361-63598380 Msa0563270:CDS 35.0%
AAAGGTCTGATTATGACCAA+CGG + chr4_1:63598895-63598914 None:intergenic 35.0%
GCCAAATAATAATATGGAGC+CGG - chr4_1:63598953-63598972 Msa0563270:CDS 35.0%
CCAAATAATAATATGGAGCC+GGG - chr4_1:63598954-63598973 Msa0563270:CDS 35.0%
CAAATAATAATATGGAGCCG+GGG - chr4_1:63598955-63598974 Msa0563270:CDS 35.0%
ATCCTGTTATCATTGCTTCT+GGG - chr4_1:63599036-63599055 Msa0563270:CDS 35.0%
TTCTGGGCAAACATTTGAAA+AGG - chr4_1:63599052-63599071 Msa0563270:CDS 35.0%
GTTTGCATAGAGAAATGGTT+CGG - chr4_1:63599074-63599093 Msa0563270:CDS 35.0%
!!! AAGATGTGGAAGGTTTTGTT+GGG + chr4_1:63599126-63599145 None:intergenic 35.0%
!! AAAGATGTGGAAGGTTTTGT+TGG + chr4_1:63599127-63599146 None:intergenic 35.0%
TTAGGAGTCAAGTAAAGATG+TGG + chr4_1:63599140-63599159 None:intergenic 35.0%
GACTCCTAATTACTGTGTTA+AGG - chr4_1:63599151-63599170 Msa0563270:intron 35.0%
AGACCCTTAACACAGTAATT+AGG + chr4_1:63599158-63599177 None:intergenic 35.0%
AATGGAATTCCTATTCCTGA+AGG - chr4_1:63599200-63599219 Msa0563270:CDS 35.0%
TAAGATCAAGTGATTCTGGA+GGG + chr4_1:63599226-63599245 None:intergenic 35.0%
TTAAGATCAAGTGATTCTGG+AGG + chr4_1:63599227-63599246 None:intergenic 35.0%
TGATCTTAACTACTGGAGAT+TGG - chr4_1:63599238-63599257 Msa0563270:CDS 35.0%
GAGATACATCTCTCTTCTAA+AGG + chr4_1:63599344-63599363 None:intergenic 35.0%
AGATGTATCTCAGAGGAATA+TGG - chr4_1:63599353-63599372 Msa0563270:CDS 35.0%
GATGTATCTCAGAGGAATAT+GGG - chr4_1:63599354-63599373 Msa0563270:CDS 35.0%
ATGTATCTCAGAGGAATATG+GGG - chr4_1:63599355-63599374 Msa0563270:CDS 35.0%
! TGAAAGTATATCTGCACAAG+AGG - chr4_1:63599388-63599407 Msa0563270:CDS 35.0%
TTGGAAGAGGAAATATGAAG+TGG - chr4_1:63599463-63599482 Msa0563270:intron 35.0%
ATGAAGTGGTAGAACAGTTA+AGG - chr4_1:63599477-63599496 Msa0563270:intron 35.0%
! TGAGGAAGCTAGGATTTTTA+TGG - chr4_1:63599517-63599536 Msa0563270:intron 35.0%
! GAGGAAGCTAGGATTTTTAT+GGG - chr4_1:63599518-63599537 Msa0563270:intron 35.0%
! AGGAAGCTAGGATTTTTATG+GGG - chr4_1:63599519-63599538 Msa0563270:intron 35.0%
AATTTGATTGCTCAGGAAAG+CGG - chr4_1:63599599-63599618 Msa0563270:intron 35.0%
!! GGCCAAAAATCACCATTTTT+GGG - chr4_1:63599741-63599760 Msa0563270:CDS 35.0%
TGGGATAAAAGATCTAGGTT+AGG - chr4_1:63599760-63599779 Msa0563270:CDS 35.0%
! TATCCTGTTTCAGGTAACAT+AGG - chr4_1:63599848-63599867 Msa0563270:intron 35.0%
! ATCCTGTTTCAGGTAACATA+GGG - chr4_1:63599849-63599868 Msa0563270:intron 35.0%
AAAACAACAAAAGCCGGTAT+GGG + chr4_1:63600054-63600073 None:intergenic 35.0%
AAAAACAACAAAAGCCGGTA+TGG + chr4_1:63600055-63600074 None:intergenic 35.0%
!!! CGGCTTTTGTTGTTTTTGTT+TGG - chr4_1:63600058-63600077 Msa0563270:CDS 35.0%
!!! GATGTCTTTTTCTGAAATGC+AGG + chr4_1:63600087-63600106 None:intergenic 35.0%
! TTTTAATGACGCATTAAGGG+TGG - chr4_1:63600172-63600191 Msa0563270:intron 35.0%
!!! GTGGTTTTAATGATGCATCA+AGG - chr4_1:63600191-63600210 Msa0563270:intron 35.0%
GTAGTGATGCATTCAATGTA+AGG + chr4_1:63600262-63600281 None:intergenic 35.0%
TTGGAAAACAAGTTAACGGA+AGG + chr4_1:63600353-63600372 None:intergenic 35.0%
CTTCAGCCACATTCAATATT+TGG + chr4_1:63600372-63600391 None:intergenic 35.0%
TTTCTGTTGAAAAGAAAGGG+AGG + chr4_1:63600470-63600489 None:intergenic 35.0%
! AAGGAGATTATGTTTTCAGC+CGG - chr4_1:63600491-63600510 Msa0563270:intron 35.0%
CTCCAACAAAGATAAAACTC+CGG + chr4_1:63600513-63600532 None:intergenic 35.0%
GAATGTCATAGTCAGATTGA+AGG + chr4_1:63600658-63600677 None:intergenic 35.0%
ATGCCAGATGAAAGTAAGTA+TGG + chr4_1:63600740-63600759 None:intergenic 35.0%
CTTTCATCTGGCATTGTTAA+CGG - chr4_1:63600746-63600765 Msa0563270:intron 35.0%
AATTTAGCCACTTCTCAAGT+TGG - chr4_1:63600839-63600858 Msa0563270:intron 35.0%
CACTTCTGTTGCACAAAATT+AGG + chr4_1:63600964-63600983 None:intergenic 35.0%
ACTGATATTGATACCAATGC+AGG + chr4_1:63601025-63601044 None:intergenic 35.0%
! ACAGACAAATCACTAGTTTC+AGG + chr4_1:63601148-63601167 None:intergenic 35.0%
CTTCTCCAGAAAAAGCTAAA+AGG + chr4_1:63601229-63601248 None:intergenic 35.0%
!! CCTACAGAATTTTTCAACAC+TGG + chr4_1:63601270-63601289 None:intergenic 35.0%
! CCAGTGTTGAAAAATTCTGT+AGG - chr4_1:63601267-63601286 Msa0563270:intron 35.0%
!! AGAACGTGTTGAGTTGAGTT+TGG + chr4_1:63596392-63596411 None:intergenic 40.0%
! TCATTTTCATGGAACCTCCT+TGG - chr4_1:63596471-63596490 Msa0563270:three_prime_UTR 40.0%
GTTCAAATGAAGATCGTAGC+TGG - chr4_1:63596680-63596699 Msa0563270:three_prime_UTR 40.0%
TTCTGCTTTGCTTACCTGAT+TGG - chr4_1:63597140-63597159 Msa0563270:CDS 40.0%
!! GTGGATTTGAATGATGGATG+TGG - chr4_1:63597346-63597365 Msa0563270:CDS 40.0%
!! ATTTGCTGTTAGTGATGCCA+AGG - chr4_1:63597391-63597410 Msa0563270:CDS 40.0%
! ATGCTGTCATTCTTGGGTTT+TGG - chr4_1:63597709-63597728 Msa0563270:intron 40.0%
! TGCTGTCATTCTTGGGTTTT+GGG - chr4_1:63597710-63597729 Msa0563270:intron 40.0%
TTGCATTGCAGGGAATTAGA+GGG + chr4_1:63597762-63597781 None:intergenic 40.0%
ATTGCATTGCAGGGAATTAG+AGG + chr4_1:63597763-63597782 None:intergenic 40.0%
AAGGGAAATCAGATCGGTAT+TGG + chr4_1:63597790-63597809 None:intergenic 40.0%
AACTGCAAGGGAAATCAGAT+CGG + chr4_1:63597796-63597815 None:intergenic 40.0%
TGATTTCCCTTGCAGTTACA+TGG - chr4_1:63597799-63597818 Msa0563270:intron 40.0%
CATTTGTCCATGTAACTGCA+AGG + chr4_1:63597809-63597828 None:intergenic 40.0%
GTTACATGGACAAATGTGCA+AGG - chr4_1:63597813-63597832 Msa0563270:intron 40.0%
! CTGAATTCCAGTTTTACTCC+TGG + chr4_1:63597899-63597918 None:intergenic 40.0%
CAGGAGTAAAACTGGAATTC+AGG - chr4_1:63597897-63597916 Msa0563270:intron 40.0%
ATGTTCATTGCATGTAGCCT+TGG - chr4_1:63597924-63597943 Msa0563270:intron 40.0%
! AACATTCTTGGCTTTCTCCA+AGG + chr4_1:63597944-63597963 None:intergenic 40.0%
CAGAAGAAATGAATCGTACC+AGG + chr4_1:63597999-63598018 None:intergenic 40.0%
CTCTTGAAGATAGTCTCAGA+CGG - chr4_1:63598197-63598216 Msa0563270:intron 40.0%
TCTTGAAGATAGTCTCAGAC+GGG - chr4_1:63598198-63598217 Msa0563270:intron 40.0%
AACTTCAACGCTATTGCTCA+TGG - chr4_1:63598262-63598281 Msa0563270:intron 40.0%
ACTTCAACGCTATTGCTCAT+GGG - chr4_1:63598263-63598282 Msa0563270:intron 40.0%
TGTTTGGGCATATGAATGAG+GGG - chr4_1:63598295-63598314 Msa0563270:intron 40.0%
CATGTGCATGAACTTACACA+GGG + chr4_1:63598403-63598422 None:intergenic 40.0%
TGTAAGTTCATGCACATGCA+CGG - chr4_1:63598405-63598424 Msa0563270:intron 40.0%
TCAATGTTTAACCTGGTCTG+CGG - chr4_1:63598456-63598475 Msa0563270:CDS 40.0%
TTTAATTGCATTGCTCCAGC+AGG - chr4_1:63598572-63598591 Msa0563270:CDS 40.0%
TTAATTGCATTGCTCCAGCA+GGG - chr4_1:63598573-63598592 Msa0563270:CDS 40.0%
!!! CATCAAACTTTTTTCCCTGC+TGG + chr4_1:63598590-63598609 None:intergenic 40.0%
! TGAGCTTGAATCTTTTCACC+AGG - chr4_1:63598626-63598645 Msa0563270:CDS 40.0%
AGTAGCTCTTGCTGAAAGAA+GGG - chr4_1:63598680-63598699 Msa0563270:intron 40.0%
AGAAACTTATTGACAGGGCT+CGG - chr4_1:63598709-63598728 Msa0563270:CDS 40.0%
!! TTCAGATGACACTGATTCTC+AGG - chr4_1:63598818-63598837 Msa0563270:CDS 40.0%
!! TCAGATGACACTGATTCTCA+GGG - chr4_1:63598819-63598838 Msa0563270:CDS 40.0%
AAGGTCTGATTATGACCAAC+GGG + chr4_1:63598894-63598913 None:intergenic 40.0%
CCCGGCTCCATATTATTATT+TGG + chr4_1:63598957-63598976 None:intergenic 40.0%
ATTGGACACCTTAACTCTTC+TGG + chr4_1:63598996-63599015 None:intergenic 40.0%
GATCCTGTTATCATTGCTTC+TGG - chr4_1:63599035-63599054 Msa0563270:CDS 40.0%
!! ATAGAGAAATGGTTCGGTGA+TGG - chr4_1:63599080-63599099 Msa0563270:CDS 40.0%
!! TAGAGAAATGGTTCGGTGAT+GGG - chr4_1:63599081-63599100 Msa0563270:CDS 40.0%
!!! GAAGGTTTTGTTGGGTCTTT+GGG + chr4_1:63599118-63599137 None:intergenic 40.0%
GAGTCAAGTAAAGATGTGGA+AGG + chr4_1:63599136-63599155 None:intergenic 40.0%
!! TTAAGGGTCTTGTTGCTAGT+TGG - chr4_1:63599168-63599187 Msa0563270:intron 40.0%
! GCTAGTTGGTGTGAACAAAA+TGG - chr4_1:63599182-63599201 Msa0563270:CDS 40.0%
! TGTCAACTCTTGCAAGTTGA+AGG - chr4_1:63599304-63599323 Msa0563270:CDS 40.0%
! GTCAACTCTTGCAAGTTGAA+GGG - chr4_1:63599305-63599324 Msa0563270:CDS 40.0%
AGAAGAGAGATGTATCTCAG+AGG - chr4_1:63599346-63599365 Msa0563270:CDS 40.0%
TCAGAGGAATATGGGGAAAA+TGG - chr4_1:63599362-63599381 Msa0563270:CDS 40.0%
TTTCCTGAAAGTCTTGACTG+AGG - chr4_1:63599433-63599452 Msa0563270:CDS 40.0%
TTCCTGAAAGTCTTGACTGA+GGG - chr4_1:63599434-63599453 Msa0563270:CDS 40.0%
! GGAAGCTAGGATTTTTATGG+GGG - chr4_1:63599520-63599539 Msa0563270:intron 40.0%
! AGGATTTTTATGGGGGCTAA+TGG - chr4_1:63599527-63599546 Msa0563270:intron 40.0%
! GGATTTTTATGGGGGCTAAT+GGG - chr4_1:63599528-63599547 Msa0563270:intron 40.0%
!! GATCGGATATCACCACTTTT+GGG - chr4_1:63599719-63599738 Msa0563270:intron 40.0%
!! ATCGGATATCACCACTTTTG+GGG - chr4_1:63599720-63599739 Msa0563270:intron 40.0%
! GGGCCAAAAATCACCATTTT+TGG - chr4_1:63599740-63599759 Msa0563270:CDS 40.0%
! TCCTGTTTCAGGTAACATAG+GGG - chr4_1:63599850-63599869 Msa0563270:intron 40.0%
CTTCAAGGGTAATGAAGGTA+AGG + chr4_1:63600022-63600041 None:intergenic 40.0%
!!! GTCTTTTTCTGAAATGCAGG+AGG + chr4_1:63600084-63600103 None:intergenic 40.0%
!! AGCCGGAGTTTTATCTTTGT+TGG - chr4_1:63600508-63600527 Msa0563270:intron 40.0%
!! CGGAGTTTTATCTTTGTTGG+AGG - chr4_1:63600511-63600530 Msa0563270:intron 40.0%
GAAGAAGCCAAACCTATGAT+TGG - chr4_1:63600599-63600618 Msa0563270:CDS 40.0%
ACTCATGCCAATCATAGGTT+TGG + chr4_1:63600609-63600628 None:intergenic 40.0%
ATAGTCAGATTGAAGGAGCT+GGG + chr4_1:63600651-63600670 None:intergenic 40.0%
AAGTGAGCAATGTTCTGACA+TGG - chr4_1:63600979-63600998 Msa0563270:intron 40.0%
! GACAAATCACTAGTTTCAGG+AGG + chr4_1:63601145-63601164 None:intergenic 40.0%
CATAGAGGTTTCATTTCAGC+AGG + chr4_1:63601175-63601194 None:intergenic 40.0%
!! CTAGACATCGACTTACATAG+AGG + chr4_1:63601190-63601209 None:intergenic 40.0%
TCGATGTCTAGAAGAAAGAC+CGG - chr4_1:63601199-63601218 Msa0563270:intron 40.0%
! GATTGCAATGTTGCTCCTTT+TGG - chr4_1:63601338-63601357 Msa0563270:intron 40.0%
AATCTCTCCAATCCAAGTGT+TGG - chr4_1:63601446-63601465 Msa0563270:intron 40.0%
TGCAAATCCAACACTTGGAT+TGG + chr4_1:63601456-63601475 None:intergenic 40.0%
TTGGAATCGGAGAACGAGTT+TGG + chr4_1:63596373-63596392 None:intergenic 45.0%
GAGGGAAATTAGAACCAAGG+AGG + chr4_1:63596488-63596507 None:intergenic 45.0%
ATCCACTGTCCGTGTAAACT+CGG + chr4_1:63597332-63597351 None:intergenic 45.0%
! CGGACAGTGGATTTGAATGA+TGG - chr4_1:63597340-63597359 Msa0563270:CDS 45.0%
!!! CTTTTAAGACTCACGAACGC+TGG - chr4_1:63597672-63597691 Msa0563270:intron 45.0%
TTCCTTCGTTAGAAGCAGCT+AGG - chr4_1:63597872-63597891 Msa0563270:intron 45.0%
ATTGTGATGCAGGCTGTAAC+TGG - chr4_1:63598136-63598155 Msa0563270:intron 45.0%
TTGTGATGCAGGCTGTAACT+GGG - chr4_1:63598137-63598156 Msa0563270:intron 45.0%
TCCACAATCCATTGGATGTC+AGG - chr4_1:63598234-63598253 Msa0563270:intron 45.0%
!! ACCTGACATCCAATGGATTG+TGG + chr4_1:63598238-63598257 None:intergenic 45.0%
GTTTGGGCATATGAATGAGG+GGG - chr4_1:63598296-63598315 Msa0563270:intron 45.0%
CCAGAATATCACCAACAAGG+TGG + chr4_1:63598358-63598377 None:intergenic 45.0%
!! CCACCTTGTTGGTGATATTC+TGG - chr4_1:63598355-63598374 Msa0563270:CDS 45.0%
GCATGTGCATGAACTTACAC+AGG + chr4_1:63598404-63598423 None:intergenic 45.0%
CGGTATGACTTTACCTGTTC+AGG - chr4_1:63598476-63598495 Msa0563270:CDS 45.0%
! GACTTTACCTGTTCAGGTTC+AGG - chr4_1:63598482-63598501 Msa0563270:CDS 45.0%
ACAATCTCCTGAACCTGAAC+AGG + chr4_1:63598492-63598511 None:intergenic 45.0%
! TCGCCAACTTGCTTCTCTAA+GGG + chr4_1:63598549-63598568 None:intergenic 45.0%
! ATCGCCAACTTGCTTCTCTA+AGG + chr4_1:63598550-63598569 None:intergenic 45.0%
GAGTAGCTCTTGCTGAAAGA+AGG - chr4_1:63598679-63598698 Msa0563270:intron 45.0%
GAAACTTATTGACAGGGCTC+GGG - chr4_1:63598710-63598729 Msa0563270:CDS 45.0%
TCAATAGATCCCTGGACAGT+GGG + chr4_1:63598861-63598880 None:intergenic 45.0%
TACCATCCTCAATAGATCCC+TGG + chr4_1:63598869-63598888 None:intergenic 45.0%
ATTGAGGATGGTATTCCCGT+TGG - chr4_1:63598876-63598895 Msa0563270:CDS 45.0%
CTCTACCACCAGAAGAGTTA+AGG - chr4_1:63598985-63599004 Msa0563270:CDS 45.0%
TGCCCAGAAGCAATGATAAC+AGG + chr4_1:63599041-63599060 None:intergenic 45.0%
!!! GGAAGGTTTTGTTGGGTCTT+TGG + chr4_1:63599119-63599138 None:intergenic 45.0%
!! CAAGTTGAAGGGTGTCAAAG+TGG - chr4_1:63599316-63599335 Msa0563270:CDS 45.0%
TCCTGAAAGTCTTGACTGAG+GGG - chr4_1:63599435-63599454 Msa0563270:CDS 45.0%
TCTTGACTGAGGGGAACAAT+TGG - chr4_1:63599444-63599463 Msa0563270:CDS 45.0%
AACAGTTAAGGCTGTTGCTG+AGG - chr4_1:63599489-63599508 Msa0563270:intron 45.0%
ACAGTTAAGGCTGTTGCTGA+GGG - chr4_1:63599490-63599509 Msa0563270:intron 45.0%
ACCTAGCTGTGAATAACGAC+AGG - chr4_1:63599639-63599658 Msa0563270:intron 45.0%
ACCTGTCGTTATTCACAGCT+AGG + chr4_1:63599643-63599662 None:intergenic 45.0%
! GGATCGGATATCACCACTTT+TGG - chr4_1:63599718-63599737 Msa0563270:intron 45.0%
!!! GTGATTTTTGGCCCCAAAAG+TGG + chr4_1:63599734-63599753 None:intergenic 45.0%
TAAACTTGGGGACCAAAACC+CGG - chr4_1:63599804-63599823 Msa0563270:CDS 45.0%
GGGGACTAATATCCTGTTTC+AGG - chr4_1:63599839-63599858 Msa0563270:intron 45.0%
TCCCCTATGTTACCTGAAAC+AGG + chr4_1:63599854-63599873 None:intergenic 45.0%
!!! ACCAAGATGGGTTTTGGTTG+AGG + chr4_1:63599968-63599987 None:intergenic 45.0%
GTGCTCTTCAAGGGTAATGA+AGG + chr4_1:63600027-63600046 None:intergenic 45.0%
! TCATTACCCTTGAAGAGCAC+TGG - chr4_1:63600027-63600046 Msa0563270:CDS 45.0%
! TCATAGGTTTGGCTTCTTCG+AGG + chr4_1:63600598-63600617 None:intergenic 45.0%
ACCTATGATTGGCATGAGTC+AGG - chr4_1:63600610-63600629 Msa0563270:exon 45.0%
CATAGTCAGATTGAAGGAGC+TGG + chr4_1:63600652-63600671 None:intergenic 45.0%
ACAATCCCTTCTTGTAGACC+AGG - chr4_1:63600772-63600791 Msa0563270:intron 45.0%
CAATCCCTTCTTGTAGACCA+GGG - chr4_1:63600773-63600792 Msa0563270:intron 45.0%
ATCACCCTGGTCTACAAGAA+GGG + chr4_1:63600780-63600799 None:intergenic 45.0%
ACCAGGGTGATGATTGTACA+TGG - chr4_1:63600789-63600808 Msa0563270:intron 45.0%
TCCATGTACAATCATCACCC+TGG + chr4_1:63600793-63600812 None:intergenic 45.0%
!! TAGCCACTTCTCAAGTTGGA+AGG - chr4_1:63600843-63600862 Msa0563270:intron 45.0%
!! AGCCACTTCTCAAGTTGGAA+GGG - chr4_1:63600844-63600863 Msa0563270:intron 45.0%
!! TCAAGTTGGAAGGGAGGAAA+TGG - chr4_1:63600853-63600872 Msa0563270:intron 45.0%
TCCTGAACTCATCAGTGCAT+TGG - chr4_1:63600883-63600902 Msa0563270:intron 45.0%
!! CAGTGCATTGGCTTCCATAT+TGG - chr4_1:63600895-63600914 Msa0563270:intron 45.0%
!! GGAAGGTGTTATACCTGCAT+TGG - chr4_1:63601009-63601028 Msa0563270:intron 45.0%
!! AGCTTTTTCTCTCCCTCTTG+GGG + chr4_1:63601056-63601075 None:intergenic 45.0%
!! GAGCTTTTTCTCTCCCTCTT+GGG + chr4_1:63601057-63601076 None:intergenic 45.0%
!! TGAGCTTTTTCTCTCCCTCT+TGG + chr4_1:63601058-63601077 None:intergenic 45.0%
ACGGGATGAATCATCTGTTG+AGG - chr4_1:63601108-63601127 Msa0563270:intron 45.0%
AGAGGTTTCATTTCAGCAGG+TGG + chr4_1:63601172-63601191 None:intergenic 45.0%
TTGGGAACAGAAAGGGACAA+GGG + chr4_1:63601315-63601334 None:intergenic 45.0%
TTGTCCCTTTCTGTTCCCAA+GGG - chr4_1:63601315-63601334 Msa0563270:intron 45.0%
AATCCCCTTGGGAACAGAAA+GGG + chr4_1:63601322-63601341 None:intergenic 45.0%
AGCAACATTGCAATCCCCTT+GGG + chr4_1:63601333-63601352 None:intergenic 45.0%
!! TCTTCGCTCTGGAAACCAAA+AGG + chr4_1:63601356-63601375 None:intergenic 45.0%
TGTACATCTCTTCTTCGCTC+TGG + chr4_1:63601367-63601386 None:intergenic 45.0%
AGAGCGAAGAAGAGATGTAC+AGG - chr4_1:63601366-63601385 Msa0563270:intron 45.0%
GTACAGGCCTGTGTAATTTC+TGG - chr4_1:63601382-63601401 Msa0563270:intron 45.0%
CTTTAATCCCACGCTTGCTT+TGG - chr4_1:63601539-63601558 Msa0563270:five_prime_UTR 45.0%
TGCTTTGGCCGGATATTGAT+AGG - chr4_1:63601554-63601573 Msa0563270:five_prime_UTR 45.0%
CAGTTCTCGCTAAGCCAATC+AGG + chr4_1:63597157-63597176 None:intergenic 50.0%
!! CTGATTGGCTTAGCGAGAAC+TGG - chr4_1:63597155-63597174 Msa0563270:CDS 50.0%
TCCACTGTCCGTGTAAACTC+GGG + chr4_1:63597331-63597350 None:intergenic 50.0%
TGTGATGCAGGCTGTAACTG+GGG - chr4_1:63598138-63598157 Msa0563270:intron 50.0%
TGAAGATAGTCTCAGACGGG+TGG - chr4_1:63598201-63598220 Msa0563270:intron 50.0%
GTAAAGTCATACCGCAGACC+AGG + chr4_1:63598470-63598489 None:intergenic 50.0%
GACCCCTTAGAGAAGCAAGT+TGG - chr4_1:63598543-63598562 Msa0563270:CDS 50.0%
! CGCCAACTTGCTTCTCTAAG+GGG + chr4_1:63598548-63598567 None:intergenic 50.0%
TTCCAAGTCTAGTAGCAGCC+TGG + chr4_1:63598647-63598666 None:intergenic 50.0%
GGCTGAGGAAGACAAACGAA+AGG - chr4_1:63598731-63598750 Msa0563270:CDS 50.0%
!! GACACTGATTCTCAGGGTTC+TGG - chr4_1:63598825-63598844 Msa0563270:CDS 50.0%
CTCAATAGATCCCTGGACAG+TGG + chr4_1:63598862-63598881 None:intergenic 50.0%
CACTGTCCAGGGATCTATTG+AGG - chr4_1:63598860-63598879 Msa0563270:CDS 50.0%
GTCCAGGGATCTATTGAGGA+TGG - chr4_1:63598864-63598883 Msa0563270:CDS 50.0%
GGACACCTTAACTCTTCTGG+TGG + chr4_1:63598993-63599012 None:intergenic 50.0%
TCCCCTCAGTCAAGACTTTC+AGG + chr4_1:63599439-63599458 None:intergenic 50.0%
CTGAGGGGAACAATTGGAAG+AGG - chr4_1:63599450-63599469 Msa0563270:CDS 50.0%
TGAGGGATGATGAGGAAGCT+AGG - chr4_1:63599507-63599526 Msa0563270:intron 50.0%
GCCTCAACCAAAACCCATCT+TGG - chr4_1:63599964-63599983 Msa0563270:intron 50.0%
ATGGGTCCAGTGCTCTTCAA+GGG + chr4_1:63600036-63600055 None:intergenic 50.0%
TATGGGTCCAGTGCTCTTCA+AGG + chr4_1:63600037-63600056 None:intergenic 50.0%
GCCTGACTCATGCCAATCAT+AGG + chr4_1:63600614-63600633 None:intergenic 50.0%
CAGATTGAAGGAGCTGGGTT+AGG + chr4_1:63600646-63600665 None:intergenic 50.0%
CATCACCCTGGTCTACAAGA+AGG + chr4_1:63600781-63600800 None:intergenic 50.0%
CTCCCTTCCAACTTGAGAAG+TGG + chr4_1:63600849-63600868 None:intergenic 50.0%
!! CACTTCTCAAGTTGGAAGGG+AGG - chr4_1:63600847-63600866 Msa0563270:intron 50.0%
! GCCAATGCACTGATGAGTTC+AGG + chr4_1:63600887-63600906 None:intergenic 50.0%
GGCTTCCATATTGGACACTG+AGG - chr4_1:63600904-63600923 Msa0563270:intron 50.0%
GAGCTCCTCAGTGTCCAATA+TGG + chr4_1:63600912-63600931 None:intergenic 50.0%
ATGTTCTGACATGGTCCTGC+AGG - chr4_1:63600988-63601007 Msa0563270:intron 50.0%
CAGGTATAACACCTTCCTGC+AGG + chr4_1:63601006-63601025 None:intergenic 50.0%
TGGGAACAGAAAGGGACAAG+GGG + chr4_1:63601314-63601333 None:intergenic 50.0%
CTTGGGAACAGAAAGGGACA+AGG + chr4_1:63601316-63601335 None:intergenic 50.0%
CTTGTCCCTTTCTGTTCCCA+AGG - chr4_1:63601314-63601333 Msa0563270:intron 50.0%
TGTCCCTTTCTGTTCCCAAG+GGG - chr4_1:63601316-63601335 Msa0563270:intron 50.0%
CAATCCCCTTGGGAACAGAA+AGG + chr4_1:63601323-63601342 None:intergenic 50.0%
GAGCAACATTGCAATCCCCT+TGG + chr4_1:63601334-63601353 None:intergenic 50.0%
GCGCACTGCCTATCAATATC+CGG + chr4_1:63601565-63601584 None:intergenic 50.0%
AAGCACTTGCACGCAACGCA+AGG + chr4_1:63596348-63596367 None:intergenic 55.0%
TCCCGAGTTTACACGGACAG+TGG - chr4_1:63597327-63597346 Msa0563270:CDS 55.0%
!! AATGATGGATGTGGCCGCTG+AGG - chr4_1:63597355-63597374 Msa0563270:CDS 55.0%
GGCCTAGCTGCTTCTAACGA+AGG + chr4_1:63597877-63597896 None:intergenic 55.0%
GCTAGGCCCAGGAGTAAAAC+TGG - chr4_1:63597889-63597908 Msa0563270:intron 55.0%
CACCAGGCTGCTACTAGACT+TGG - chr4_1:63598642-63598661 Msa0563270:intron 55.0%
TCCTTGTTCTCCCACTGTCC+AGG - chr4_1:63598848-63598867 Msa0563270:CDS 55.0%
CCTTGTTCTCCCACTGTCCA+GGG - chr4_1:63598849-63598868 Msa0563270:CDS 55.0%
TAATATGGAGCCGGGGCAGA+TGG - chr4_1:63598962-63598981 Msa0563270:CDS 55.0%
TCTGGAGGGCCTTCAGGAAT+AGG + chr4_1:63599212-63599231 None:intergenic 55.0%
! AGTGATTCTGGAGGGCCTTC+AGG + chr4_1:63599218-63599237 None:intergenic 55.0%
GCTGTTGCTGAGGGATGATG+AGG - chr4_1:63599499-63599518 Msa0563270:intron 55.0%
TGCTCAGGAAAGCGGAGCAA+TGG - chr4_1:63599607-63599626 Msa0563270:intron 55.0%
!! GAAGAGCACTGGACCCATAC+CGG - chr4_1:63600038-63600057 Msa0563270:CDS 55.0%
TCTGACATGGTCCTGCAGGA+AGG - chr4_1:63600992-63601011 Msa0563270:intron 55.0%
TCAGTGAATGGGACCCCAAG+AGG - chr4_1:63601040-63601059 Msa0563270:intron 55.0%
CAGTGAATGGGACCCCAAGA+GGG - chr4_1:63601041-63601060 Msa0563270:intron 55.0%
ATTCATCCCGTCGCTGCTGT+CGG + chr4_1:63601099-63601118 None:intergenic 55.0%
AATCCCACGCTTGCTTTGGC+CGG - chr4_1:63601543-63601562 Msa0563270:five_prime_UTR 55.0%
TATCCGGCCAAAGCAAGCGT+GGG + chr4_1:63601549-63601568 None:intergenic 55.0%
ATATCCGGCCAAAGCAAGCG+TGG + chr4_1:63601550-63601569 None:intergenic 55.0%
CGTTAGAAGCAGCTAGGCCC+AGG - chr4_1:63597878-63597897 Msa0563270:intron 60.0%
TATTGACAGGGCTCGGGCTG+AGG - chr4_1:63598716-63598735 Msa0563270:CDS 60.0%
CCCTGGACAGTGGGAGAACA+AGG + chr4_1:63598852-63598871 None:intergenic 60.0%
CACTGAGGAGCTCGAAGTGC+AGG - chr4_1:63600919-63600938 Msa0563270:intron 60.0%
TGCTGTTCCGACAGCAGCGA+CGG - chr4_1:63601089-63601108 Msa0563270:intron 60.0%
GGTGGTAGAGCCATCTGCCC+CGG + chr4_1:63598975-63598994 None:intergenic 65.0%
GCTGTTCCGACAGCAGCGAC+GGG - chr4_1:63601090-63601109 Msa0563270:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 63596331 63601646 63596331 ID=Msa0563270;Name=Msa0563270
chr4_1 mRNA 63596331 63601646 63596331 ID=Msa0563270-mRNA-1;Parent=Msa0563270;Name=Msa0563270-mRNA-1;_AED=0.04;_eAED=0.04;_QI=254|0.6|0.54|1|0.4|0.18|11|333|741
chr4_1 exon 63596331 63596421 63596331 ID=Msa0563270-mRNA-1:exon:20287;Parent=Msa0563270-mRNA-1
chr4_1 exon 63596459 63597490 63596459 ID=Msa0563270-mRNA-1:exon:20286;Parent=Msa0563270-mRNA-1
chr4_1 exon 63598317 63598405 63598317 ID=Msa0563270-mRNA-1:exon:20285;Parent=Msa0563270-mRNA-1
chr4_1 exon 63598412 63598651 63598412 ID=Msa0563270-mRNA-1:exon:20284;Parent=Msa0563270-mRNA-1
chr4_1 exon 63598682 63598903 63598682 ID=Msa0563270-mRNA-1:exon:20283;Parent=Msa0563270-mRNA-1
chr4_1 exon 63598937 63599168 63598937 ID=Msa0563270-mRNA-1:exon:20282;Parent=Msa0563270-mRNA-1
chr4_1 exon 63599178 63599479 63599178 ID=Msa0563270-mRNA-1:exon:20281;Parent=Msa0563270-mRNA-1
chr4_1 exon 63599722 63599829 63599722 ID=Msa0563270-mRNA-1:exon:20280;Parent=Msa0563270-mRNA-1
chr4_1 exon 63599978 63600163 63599978 ID=Msa0563270-mRNA-1:exon:20279;Parent=Msa0563270-mRNA-1
chr4_1 exon 63600565 63600681 63600565 ID=Msa0563270-mRNA-1:exon:20278;Parent=Msa0563270-mRNA-1
chr4_1 exon 63601453 63601646 63601453 ID=Msa0563270-mRNA-1:exon:20277;Parent=Msa0563270-mRNA-1
chr4_1 five_prime_UTR 63601453 63601646 63601453 ID=Msa0563270-mRNA-1:five_prime_utr;Parent=Msa0563270-mRNA-1
chr4_1 five_prime_UTR 63600622 63600681 63600622 ID=Msa0563270-mRNA-1:five_prime_utr;Parent=Msa0563270-mRNA-1
chr4_1 CDS 63600565 63600621 63600565 ID=Msa0563270-mRNA-1:cds;Parent=Msa0563270-mRNA-1
chr4_1 CDS 63599978 63600163 63599978 ID=Msa0563270-mRNA-1:cds;Parent=Msa0563270-mRNA-1
chr4_1 CDS 63599722 63599829 63599722 ID=Msa0563270-mRNA-1:cds;Parent=Msa0563270-mRNA-1
chr4_1 CDS 63599178 63599479 63599178 ID=Msa0563270-mRNA-1:cds;Parent=Msa0563270-mRNA-1
chr4_1 CDS 63598937 63599168 63598937 ID=Msa0563270-mRNA-1:cds;Parent=Msa0563270-mRNA-1
chr4_1 CDS 63598682 63598903 63598682 ID=Msa0563270-mRNA-1:cds;Parent=Msa0563270-mRNA-1
chr4_1 CDS 63598412 63598651 63598412 ID=Msa0563270-mRNA-1:cds;Parent=Msa0563270-mRNA-1
chr4_1 CDS 63598317 63598405 63598317 ID=Msa0563270-mRNA-1:cds;Parent=Msa0563270-mRNA-1
chr4_1 CDS 63596701 63597490 63596701 ID=Msa0563270-mRNA-1:cds;Parent=Msa0563270-mRNA-1
chr4_1 three_prime_UTR 63596459 63596700 63596459 ID=Msa0563270-mRNA-1:three_prime_utr;Parent=Msa0563270-mRNA-1
chr4_1 three_prime_UTR 63596331 63596421 63596331 ID=Msa0563270-mRNA-1:three_prime_utr;Parent=Msa0563270-mRNA-1
Gene Sequence

>Msa0563270

ATGATGGATGTGGCCGCTGAGGTTGAAGAAAATCTATTTGCTGTTAGTGATGCCAAGTTACATGGACAAATGTGCAAGGCTCTTTCTATAATATATTGCAAAGTATTGTCAATATTTCCTTCGTTAGAAGCAGCTAGGCCCAGGAGTAAAACTGGAATTCAGGCATTATGTTCATTGCATGTAGCCTTGGAGAAAGCCAAGAATGTTCTTCATCATTGCTCAGTGTGTAGTAAACTTTACCTGGCTGTAACTGGGGACTCTGTTCTCCTTAAATTTGAGAAGGCAAAGTGTGCTCTTGAAGATAGTCTCAGACGGGTGGAAGATATTGTTCCACAATCCATTGGATGTCAGGTTCAGGAGATTGTGAATGAATTTGCAGATGTAGAATTTGCACTCGACCCCTTAGAGAAGCAAGTTGGCGATGATTTAATTGCATTGCTCCAGCAGGGAAAAAAGTTTGATGATGATGGTGAAAGTTATGAGCTTGAATCTTTTCACCAGGCTGCTACTAGACTTGGAATCACATCTTCAAGAGTAGCTCTTGCTGAAAGAAGGGCTCTAAAGAAACTTATTGACAGGGCTCGGGCTGAGGAAGACAAACGAAAGGAATCAATTGTTGCATATCTTTTGCATCTTATGAGGAAATACTCCAAAAATGAGTTTTCAGATGACACTGATTCTCAGGGTTCTGGTCCTTGTTCTCCCACTGTCCAGGGATCTATTGAGGATGGTATTCCCGTTGGTCATAATCAGACCTTTGAGAGACAACTTTCAAAACTTAGTTCCTTTAATTTCAAGCCAAATAATAATATGGAGCCGGGGCAGATGGCTCTACCACCAGAAGAGTTAAGGTGTCCAATTTCTCTTCAACTTATGTATGATCCTGTTTGCATAGAGAAATGGTTCGGTGATGGGCATAGCAACTGCCCAAAGACCCAACAAAACCTTCCACATCTTTACTTGACTCCTAATTACTGTGTTAAGGGTCTTGTTGCTAGTTGGTGTGAACAAAATGGAATTCCTATTCCTGAAGGCCCTCCAGAATCACTTGATCTTAACTACTGGAGATTGGTATTATCAGAGTCTGAGTCTACAAATTCAAGATCTGGTGTCAAAGTGGTTCCTTTAGAAGAGAGATGTATCTCAGAGGAATATGGGGAAAATGGAGCTGAAAGTATATCTGCACAAGAGGAAGACACTGAGCAGTATCTCAGTTTCCTGAAAGTCTTGACTGAGGGGAACAATTGGAAGAGGAAATATGAAGTGGTAGAACAGTTAAGGCTGTTGCTGAGGGATGATGAGGAAGCTAGGATTTTTATGGGGGCTAATGGGTTTGTTGAAGCACTTTTTTTACAATCAGCTGTACATGAAAAGAATTTGATTGCTCAGGAAAGCGGAGCAATGGCTCTCTTCAACCTAGCTGTGAATAACGACAGAAATAAGGAGATTATGTTTTCAGCCGGAGTTTTATCTTTGTTGGAGGAAATGATTTCTAACACTAATTCTTATGGTTGTGCAACTGCTCTGTATCTGAATCTCTCTTGCCTCGAAGAAGCCAAACCTATGATTGGCATGAGTCAGGCTGTACAATTCCTAACCCAGCTCCTTCAATCTGACTATGACATTCAATACAAGCAAGATTCTCTCCATGCTCTCTATAATCTTTCTACTGTGCCCTCCAATATTCCATACTTACTTTCATCTGGCATTGTTAACGGTCTACAATCCCTTCTTGTAGACCAGGGTGATGATTGTACATGGACAGAAAAATGTATTGCTGTTTTGATAAATTTAGCCACTTCTCAAGTTGGAAGGGAGGAAATGGTATCAAATCCTGAACTCATCAGTGCATTGGCTTCCATATTGGACACTGAGGAGCTCGAAGTGCAGGAGCAAGCTGTCTCTTGTCTCCTAATTTTGTGCAACAGAAGTGAGCAATGTTCTGACATGGTCCTGCAGGAAGGTGTTATACCTGCATTGGTATCAATATCAGTGAATGGGACCCCAAGAGGGAGAGAAAAAGCTCAGAAACTCTTGATGCTGTTCCGACAGCAGCGACGGGATGAATCATCTGTTGAGGTACATCAGTGTCCTCCTGAAACTAGTGATTTGTCTGTGCCACCTGCTGAAATGAAACCTCTATGTAAGTCGATGTCTAGAAGAAAGACCGGTAAACCTTTTAGCTTTTTCTGGAGAAGCAAGAGCTATTCTGTATACCAGTGTTGA
Protein sequence

>Msa0563270

MMDVAAEVEENLFAVSDAKLHGQMCKALSIIYCKVLSIFPSLEAARPRSKTGIQALCSLHVALEKAKNVLHHCSVCSKLYLAVTGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGCQVQEIVNEFADVEFALDPLEKQVGDDLIALLQQGKKFDDDGESYELESFHQAATRLGITSSRVALAERRALKKLIDRARAEEDKRKESIVAYLLHLMRKYSKNEFSDDTDSQGSGPCSPTVQGSIEDGIPVGHNQTFERQLSKLSSFNFKPNNNMEPGQMALPPEELRCPISLQLMYDPVCIEKWFGDGHSNCPKTQQNLPHLYLTPNYCVKGLVASWCEQNGIPIPEGPPESLDLNYWRLVLSESESTNSRSGVKVVPLEERCISEEYGENGAESISAQEEDTEQYLSFLKVLTEGNNWKRKYEVVEQLRLLLRDDEEARIFMGANGFVEALFLQSAVHEKNLIAQESGAMALFNLAVNNDRNKEIMFSAGVLSLLEEMISNTNSYGCATALYLNLSCLEEAKPMIGMSQAVQFLTQLLQSDYDIQYKQDSLHALYNLSTVPSNIPYLLSSGIVNGLQSLLVDQGDDCTWTEKCIAVLINLATSQVGREEMVSNPELISALASILDTEELEVQEQAVSCLLILCNRSEQCSDMVLQEGVIPALVSISVNGTPRGREKAQKLLMLFRQQRRDESSVEVHQCPPETSDLSVPPAEMKPLCKSMSRRKTGKPFSFFWRSKSYSVYQC*