AlfalfaGEDB | Msa0564810

M. sativa cultivar zhongmu-4 / Msa0564810

KEGG: K07198
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0564810	XP_013446646.1	98.235	510	8	1	1	509	1	510	0.0	1023

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0564810	sp\|Q9SN43\|CIPKC_ARATH	74.009	454	100	4	21	471	21	459	0.0	689

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0564810	A0A072TUY9	98.235	510	8	1	1	509	1	510	0.0	1023

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0564810	Msa0618100	0.914604	1.577699e-84	-8.615850e-47
Msa0564810	Msa0701140	0.914543	1.693882e-84	-8.615850e-47
Msa0564810	Msa1460990	0.915987	3.059543e-85	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0564810	MtrunA17_Chr8g0379091	98.235	510	8	1	1	509	1	510	0.0	1023
Msa0564810	MtrunA17_Chr2g0284031	78.017	464	93	5	14	476	19	474	0.0	729
Msa0564810	MtrunA17_Chr7g0244521	56.637	452	168	8	20	467	6	433	9.32e-177	505
Msa0564810	MtrunA17_Chr4g0013131	52.599	481	193	7	20	495	6	456	1.01e-167	482
Msa0564810	MtrunA17_Chr3g0107011	53.626	455	180	6	19	468	7	435	3.32e-164	473
Msa0564810	MtrunA17_Chr2g0284011	52.212	452	189	5	20	467	6	434	5.69e-160	461
Msa0564810	MtrunA17_Chr5g0432491	50.215	466	178	8	22	481	19	436	5.87e-159	459
Msa0564810	MtrunA17_Chr5g0432471	50.641	468	197	8	16	467	2	451	7.07e-159	460
Msa0564810	MtrunA17_Chr3g0107051	50.901	444	174	6	22	464	17	417	2.00e-153	445
Msa0564810	MtrunA17_Chr2g0304111	50.227	440	188	7	24	458	21	434	1.08e-152	444

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0564810	AT4G18700.1	74.009	454	100	4	21	471	21	459	0.0	689
Msa0564810	AT5G45810.1	68.994	487	121	8	8	481	6	475	0.0	665
Msa0564810	AT1G29230.1	66.250	480	146	5	6	484	55	519	0.0	633
Msa0564810	AT2G34180.1	64.955	448	141	4	20	467	51	482	0.0	595
Msa0564810	AT5G45820.1	54.405	454	167	6	18	468	4	420	1.61e-170	488
Msa0564810	AT5G58380.1	52.203	454	203	5	16	467	2	443	9.90e-166	478
Msa0564810	AT4G30960.1	53.319	467	176	7	3	464	2	431	5.83e-163	469
Msa0564810	AT1G30270.1	50.985	457	190	7	23	471	28	458	2.14e-162	469
Msa0564810	AT1G30270.2	50.985	457	190	7	23	471	28	458	9.48e-162	467
Msa0564810	AT2G30360.1	51.915	470	170	11	17	477	12	434	7.29e-157	454

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Find 95 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGTCCCAATAGAAGATT+TGG	0.265063	4_1:+65548230	None:intergenic
AAAGACAAAATCCTTAAAAG+TGG	0.490569	4_1:-65548110	Msa0564810:CDS
AAATGGTTAGGTTCAATGTG+AGG	0.672323	4_1:-65547092	Msa0564810:CDS
AACCTTAAAGTTTCAGATTT+TGG	0.105556	4_1:-65547804	Msa0564810:CDS
AAGAAGTTGGTCAAATGGTT+AGG	0.420177	4_1:-65547104	Msa0564810:CDS
AAGGTTGATATTTGGTCTTG+TGG	0.528506	4_1:-65547669	Msa0564810:CDS
AATAGAAGGATCAAGAATCG+TGG	0.683757	4_1:-65547273	Msa0564810:CDS
AATTTGTTGCTTGATGAAAA+AGG	0.358136	4_1:-65547828	Msa0564810:CDS
ACCTCAACCACCACCAAAGA+AGG	0.510358	4_1:+65546982	None:intergenic
ACCTCAGGAGCAACATAAGC+AGG	0.518168	4_1:+65547720	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGAATTAGGAAAACTCCT+TGG	-	chr4_1:65546852-65546871	Msa0564810:CDS	30.0%
GCTTATGATCTTTATAGCTA+CGG	+	chr4_1:65546931-65546950	None:intergenic	30.0%
GACAAAGATTTACTTTGTGA+TGG	-	chr4_1:65547064-65547083	Msa0564810:CDS	30.0%
TCAGATGAAATTAAGCAAGA+TGG	-	chr4_1:65547293-65547312	Msa0564810:CDS	30.0%
CAGATGAAATTAAGCAAGAT+GGG	-	chr4_1:65547294-65547313	Msa0564810:CDS	30.0%
ACGTTATTAGGATCATGAAA+AGG	+	chr4_1:65547452-65547471	None:intergenic	30.0%
TCATGATCCTAATAACGTTA+TGG	-	chr4_1:65547454-65547473	Msa0564810:CDS	30.0%
TACATAGCCATAACGTTATT+AGG	+	chr4_1:65547464-65547483	None:intergenic	30.0%
GATTTCTATTCCTGAGATTA+TGG	-	chr4_1:65547583-65547602	Msa0564810:CDS	30.0%
ACTATCTGAATGTTTGTCAA+TGG	+	chr4_1:65548260-65548279	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	65546777	65548306	65546777	ID=Msa0564810;Name=Msa0564810
chr4_1	mRNA	65546777	65548306	65546777	ID=Msa0564810-mRNA-1;Parent=Msa0564810;Name=Msa0564810-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|509
chr4_1	exon	65546777	65548306	65546777	ID=Msa0564810-mRNA-1:exon:21142;Parent=Msa0564810-mRNA-1
chr4_1	CDS	65546777	65548306	65546777	ID=Msa0564810-mRNA-1:cds;Parent=Msa0564810-mRNA-1

Gene Sequence

>Msa0564810

ATGGCAGTGGTAGCTGCTCCCAAGAAGAACAACTCAATCAACAAGAAAGATAATCCAAATCTTCTATTGGGACGTTTTGAATTAGGAAAACTCCTTGGCCATGGAACCTTTGCAAAAGTCCACCTTGCTAAGAACCTCAAAACAGGTGAATCCGTAGCTATAAAGATCATAAGCAAAGACAAAATCCTTAAAAGTGGTTTAGTTTCACATATCAAACGAGAAATTTCCATTCTCCGTCGTGTTCGCCACCCCAACATCGTTCAACTCTTTGAAGTCATGGCTACAAAGACAAAGATTTACTTTGTGATGGAATATGTACGAGGTGGTGAGCTTTTCAACAAGGTTGCTAAAGGTAGGTTGAAAGAAGAAGTTGCAAGAAAATATTTTCAGCAGTTAATATGTGCTGTTGGATTTTGTCATGCTAGAGGTGTTTTTCATAGAGATCTAAAGCCTGAAAATTTGTTGCTTGATGAAAAAGGTAACCTTAAAGTTTCAGATTTTGGTCTTAGTGCTGTGTCAGATGAAATTAAGCAAGATGGGTTGTTTCATACTTTTTGTGGTACACCTGCTTATGTTGCTCCTGAGGTTTTGTCTAGGAAAGGTTATGATGGTGCTAAGGTTGATATTTGGTCTTGTGGGGTTGTTTTGTTTGTTTTGATGGCTGGTTATTTACCTTTTCATGATCCTAATAACGTTATGGCTATGTATAAGAAGATTTATAAAGGTGAATTTAGGTGTCCTAGATGGTTTTCACCTGAGCTTGTTAGTCTTCTTACTAGGCTTCTTGATATTAAACCTCAAACTAGGATTTCTATTCCTGAGATTATGGAGAATCGTTGGTTTAAGATAGGTTTTAAGCAAATTAAGTTTTATGTTGAGGATGATGTTGTTTGTGATCTTGATTCACTTGATTTTGATGGTGATGATAGTAATAAAGTAGTAAAGATCGATGATCATCACGATGAAGTATTGGAATCAGTATCAGAAAATGAATCGGATTCTGAGGTTGTGAATAGAAGGATCAAGAATCGTGGTTCGTTGCCAAGGCCTGCAAGTTTGAATGCTTTTGATATTATATCGTTTTCGCAAGGTTTTGATCTTTCTGGGTTGTTTGAGGAAAAGGGTGATGAGGCAAGGTTTGTGTCTAGTGCATCAGTGCCAAAGATTATATCAAAATTGGAAGAAGTTGGTCAAATGGTTAGGTTCAATGTGAGGAAGAAAGATTGCAAGGTTCACTTGGAGGGTTCAAGAGAAGGGGCAAAAGGGCGATTGACTATTGCTGCCGAGGTCTTCGAATTGACACCTTCTTTGGTGGTGGTTGAGGTGAAGAAAAAAGGAGGTGATAAGGTTGAGTATGATAAATTTTTAAACACTGAATTGAAGCCTGCTTTGCATAGTTTAACCAAGGAGGAATCTGCAGGTTCTTCATCTCAAACTACACCAGATGAATCTTTGCAACAACGTGCATTTTCTGATTCTGCCATTGACAAACATTCAGATAGTATTGAATCTCTGAACTTAGATACCTGA

Protein sequence

>Msa0564810

MAVVAAPKKNNSINKKDNPNLLLGRFELGKLLGHGTFAKVHLAKNLKTGESVAIKIISKDKILKSGLVSHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFNKVAKGRLKEEVARKYFQQLICAVGFCHARGVFHRDLKPENLLLDEKGNLKVSDFGLSAVSDEIKQDGLFHTFCGTPAYVAPEVLSRKGYDGAKVDIWSCGVVLFVLMAGYLPFHDPNNVMAMYKKIYKGEFRCPRWFSPELVSLLTRLLDIKPQTRISIPEIMENRWFKIGFKQIKFYVEDDVVCDLDSLDFDGDDSNKVVKIDDHHDEVLESVSENESDSEVVNRRIKNRGSLPRPASLNAFDIISFSQGFDLSGLFEEKGDEARFVSSASVPKIISKLEEVGQMVRFNVRKKDCKVHLEGSREGAKGRLTIAAEVFELTPSLVVVEVKKKGGDKVEYDKFLNTELKPALHSLTKEESAGSSSQTTPDESLQQRAFSDSAIDKHSDSIESLNLDT*