Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0565310 | XP_003629897.2 | 83.459 | 266 | 11 | 2 | 1 | 233 | 1 | 266 | 2.11e-133 | 394 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0565310 | sp|Q8L7A0|TAUE3_ARATH | 55.330 | 197 | 60 | 4 | 65 | 233 | 67 | 263 | 4.16e-57 | 191 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0565310 | B7FND1 | 83.459 | 266 | 11 | 2 | 1 | 233 | 1 | 266 | 1.01e-133 | 394 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0565310 | Msa0565490 | 0.911215 | 7.821842e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0565310 | MtrunA17_Chr8g0380211 | 83.459 | 266 | 11 | 2 | 1 | 233 | 1 | 266 | 1.94e-137 | 394 |
| Msa0565310 | MtrunA17_Chr3g0139541 | 46.429 | 252 | 97 | 5 | 20 | 233 | 5 | 256 | 8.18e-59 | 192 |
| Msa0565310 | MtrunA17_Chr8g0373471 | 53.571 | 196 | 64 | 2 | 65 | 233 | 62 | 257 | 1.21e-58 | 192 |
| Msa0565310 | MtrunA17_Chr5g0403901 | 46.154 | 247 | 96 | 6 | 21 | 233 | 16 | 259 | 1.39e-54 | 181 |
| Msa0565310 | MtrunA17_Chr1g0157751 | 45.267 | 243 | 99 | 6 | 24 | 233 | 5 | 246 | 2.40e-51 | 172 |
| Msa0565310 | MtrunA17_Chr7g0265481 | 44.144 | 222 | 96 | 4 | 39 | 232 | 22 | 243 | 4.40e-48 | 164 |
| Msa0565310 | MtrunA17_Chr8g0380191 | 70.642 | 109 | 24 | 2 | 125 | 233 | 10 | 110 | 1.37e-43 | 149 |
| Msa0565310 | MtrunA17_Chr1g0179621 | 52.740 | 146 | 67 | 1 | 69 | 212 | 55 | 200 | 1.07e-39 | 142 |
| Msa0565310 | MtrunA17_Chr2g0280401 | 44.248 | 113 | 62 | 1 | 78 | 189 | 62 | 174 | 1.34e-16 | 78.2 |
| Msa0565310 | MtrunA17_Chr8g0380201 | 92.308 | 52 | 3 | 1 | 72 | 123 | 1 | 51 | 3.63e-14 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0565310 | AT2G25737.2 | 55.330 | 197 | 60 | 4 | 65 | 233 | 67 | 263 | 6.40e-59 | 190 |
| Msa0565310 | AT2G25737.1 | 55.330 | 197 | 60 | 4 | 65 | 233 | 67 | 263 | 4.23e-58 | 191 |
| Msa0565310 | AT2G36630.1 | 40.773 | 233 | 107 | 3 | 26 | 232 | 13 | 240 | 1.75e-44 | 155 |
| Msa0565310 | AT1G61740.1 | 42.857 | 126 | 71 | 1 | 66 | 190 | 47 | 172 | 9.27e-21 | 90.5 |
| Msa0565310 | AT1G11540.2 | 42.342 | 111 | 63 | 1 | 79 | 188 | 56 | 166 | 2.38e-16 | 77.8 |
| Msa0565310 | AT1G11540.1 | 43.529 | 85 | 47 | 1 | 107 | 190 | 1 | 85 | 1.82e-15 | 74.7 |
| Msa0565310 | AT4G21260.1 | 26.966 | 178 | 87 | 6 | 24 | 188 | 4 | 151 | 3.10e-15 | 74.3 |
| Msa0565310 | AT4G21250.1 | 40.678 | 118 | 65 | 1 | 72 | 189 | 52 | 164 | 8.22e-13 | 67.4 |
Find 56 sgRNAs with CRISPR-Local
Find 351 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCATCAAATCCAACAATT+AGG | 0.154007 | 4_1:+66218035 | None:intergenic |
| GCTACACTTGATCTTCAAAT+AGG | 0.240646 | 4_1:-66213196 | Msa0565310:CDS |
| ATTATAGTAGGCACCATAAT+TGG | 0.247950 | 4_1:-66218127 | Msa0565310:CDS |
| ATATTTGTGCCTCAGATATT+AGG | 0.252420 | 4_1:-66213228 | Msa0565310:intron |
| CTATGCATGGATCAAATATA+AGG | 0.255589 | 4_1:-66218485 | Msa0565310:CDS |
| TGCATCAAATCCAACAATTA+GGG | 0.286273 | 4_1:+66218036 | None:intergenic |
| CTGTTATTGAGAATGTTTAT+TGG | 0.304503 | 4_1:-66213030 | Msa0565310:CDS |
| TGCATCCAGGGGATGAAATT+TGG | 0.308805 | 4_1:-66218157 | Msa0565310:intron |
| CTACACTTGATCTTCAAATA+GGG | 0.311881 | 4_1:-66213195 | Msa0565310:CDS |
| CAAATATAAGGGACATGAAA+TGG | 0.312185 | 4_1:-66218473 | Msa0565310:CDS |
| GGCACCATAATTGGATTTCT+AGG | 0.338037 | 4_1:-66218118 | Msa0565310:CDS |
| TGATCCTAGAAATCCAATTA+TGG | 0.365400 | 4_1:+66218114 | None:intergenic |
| CCCATGCTTACCCTAATTGT+TGG | 0.368742 | 4_1:-66218046 | Msa0565310:CDS |
| GCACTGTAGGAGGTGTTGGC+GGG | 0.372369 | 4_1:-66218084 | Msa0565310:CDS |
| TGGTGTGAAGTCATGATTAC+TGG | 0.374087 | 4_1:-66214243 | Msa0565310:intron |
| TATATAAATATATAGATATA+CGG | 0.382605 | 4_1:+66218519 | None:intergenic |
| ATCAACCCCTCTGGTCTCAT+TGG | 0.398081 | 4_1:+66218344 | None:intergenic |
| GGATTTCTAGGATCATCATT+TGG | 0.421957 | 4_1:-66218106 | Msa0565310:CDS |
| GGCACTGTAGGAGGTGTTGG+CGG | 0.422371 | 4_1:-66218085 | Msa0565310:CDS |
| ACTGTAGGAGGTGTTGGCGG+GGG | 0.427739 | 4_1:-66218082 | Msa0565310:CDS |
| TTCCAACCAATGTTAATGCT+TGG | 0.430788 | 4_1:-66214132 | Msa0565310:CDS |
| TTTGGTTGGAGAATTATAGT+AGG | 0.441512 | 4_1:-66218139 | Msa0565310:CDS |
| TTCCAAGCATTAACATTGGT+TGG | 0.444141 | 4_1:+66214130 | None:intergenic |
| AATGTTTATTGGAAGGAACT+TGG | 0.447909 | 4_1:-66213019 | Msa0565310:CDS |
| TATGCATGGATCAAATATAA+GGG | 0.456423 | 4_1:-66218484 | Msa0565310:CDS |
| CACTGTAGGAGGTGTTGGCG+GGG | 0.461011 | 4_1:-66218083 | Msa0565310:CDS |
| AAATATAAGGGACATGAAAT+GGG | 0.478751 | 4_1:-66218472 | Msa0565310:CDS |
| GACATGAAATGGGTAATTCT+CGG | 0.482560 | 4_1:-66218462 | Msa0565310:CDS |
| GGGTAATTCTCGGAAGATCA+AGG | 0.491898 | 4_1:-66218452 | Msa0565310:CDS |
| TCCAACAATTAGGGTAAGCA+TGG | 0.493163 | 4_1:+66218045 | None:intergenic |
| TCACAGGAAGGTCAAGGGTT+GGG | 0.499471 | 4_1:+66214178 | None:intergenic |
| AAAGTTGTTATCATCCAGTC+AGG | 0.505433 | 4_1:+66214075 | None:intergenic |
| TTTGGCACTGTAGGAGGTGT+TGG | 0.507733 | 4_1:-66218088 | Msa0565310:CDS |
| CCTCTGGTCTCATTGGAAGC+TGG | 0.510264 | 4_1:+66218351 | None:intergenic |
| TCCAGGGGATGAAATTTGGT+TGG | 0.521038 | 4_1:-66218153 | Msa0565310:intron |
| GGATCATCATTTGGCACTGT+AGG | 0.523691 | 4_1:-66218097 | Msa0565310:CDS |
| GTCATGATTACTGGTGGAGC+GGG | 0.524525 | 4_1:-66214234 | Msa0565310:CDS |
| TATTGAGAATGTTTATTGGA+AGG | 0.526737 | 4_1:-66213026 | Msa0565310:CDS |
| GCTAAATCATAGTCAATCAC+AGG | 0.528690 | 4_1:+66214162 | None:intergenic |
| TCATCATTTGGCACTGTAGG+AGG | 0.542570 | 4_1:-66218094 | Msa0565310:CDS |
| ATCACAGGAAGGTCAAGGGT+TGG | 0.551848 | 4_1:+66214177 | None:intergenic |
| AGCATGAATATCAACCCCTC+TGG | 0.557030 | 4_1:+66218335 | None:intergenic |
| CTGATTCCAAGCATTAACAT+TGG | 0.568778 | 4_1:+66214126 | None:intergenic |
| TTAATGCTTGGAATCAGTCT+TGG | 0.581697 | 4_1:-66214120 | Msa0565310:CDS |
| TTGATGAGAAGAAGTAACAT+AGG | 0.588202 | 4_1:+66218395 | None:intergenic |
| CAGCTTCCAATGAGACCAGA+GGG | 0.596135 | 4_1:-66218350 | Msa0565310:CDS |
| AGTCAATCACAGGAAGGTCA+AGG | 0.596559 | 4_1:+66214172 | None:intergenic |
| TACACTTGATCTTCAAATAG+GGG | 0.604465 | 4_1:-66213194 | Msa0565310:CDS |
| TACATGATGATATCTATGCA+TGG | 0.604759 | 4_1:-66218498 | Msa0565310:CDS |
| GTCAATCACAGGAAGGTCAA+GGG | 0.619378 | 4_1:+66214173 | None:intergenic |
| CCAACAATTAGGGTAAGCAT+GGG | 0.643147 | 4_1:+66218046 | None:intergenic |
| AGTCATGATTACTGGTGGAG+CGG | 0.652000 | 4_1:-66214235 | Msa0565310:CDS |
| AATCATAGTCAATCACAGGA+AGG | 0.653054 | 4_1:+66214166 | None:intergenic |
| TGTGAAGTCATGATTACTGG+TGG | 0.675277 | 4_1:-66214240 | Msa0565310:intron |
| CCAGCTTCCAATGAGACCAG+AGG | 0.703237 | 4_1:-66218351 | Msa0565310:CDS |
| AGCTTCCAATGAGACCAGAG+GGG | 0.785295 | 4_1:-66218349 | Msa0565310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATTATTATATTGCAT+TGG | + | chr4_1:66213908-66213927 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTGAAAAAAC+GGG | - | chr4_1:66213982-66214001 | Msa0565310:intron | 10.0% |
| !!! | AATAAAATTAATTTTTTGAG+AGG | - | chr4_1:66214094-66214113 | Msa0565310:CDS | 10.0% |
| !! | TGTAAATAAAACTAATTATT+AGG | - | chr4_1:66214117-66214136 | Msa0565310:CDS | 10.0% |
| !!! | TTATTATTAGTTTTGTTTAT+CGG | - | chr4_1:66214164-66214183 | Msa0565310:CDS | 10.0% |
| !! | GATGTTTAATTATATTAAAA+TGG | + | chr4_1:66214912-66214931 | None:intergenic | 10.0% |
| !! | TGAATTTCATAAAAAAATAT+TGG | - | chr4_1:66215022-66215041 | Msa0565310:intron | 10.0% |
| !!! | TAATACATATGAAATTTTAA+CGG | - | chr4_1:66215287-66215306 | Msa0565310:intron | 10.0% |
| !!! | TTTTTAATGATATCATTATT+GGG | + | chr4_1:66216444-66216463 | None:intergenic | 10.0% |
| !!! | ATTTTTAATGATATCATTAT+TGG | + | chr4_1:66216445-66216464 | None:intergenic | 10.0% |
| !!! | CAAGAACAATTTATTTTTTA+AGG | - | chr4_1:66214187-66214206 | Msa0565310:CDS | 15.0% |
| !! | TATTATTAAAAAAGTTGACT+AGG | + | chr4_1:66214460-66214479 | None:intergenic | 15.0% |
| !! | GTTAAAAAAAATAAAACTAG+AGG | + | chr4_1:66214889-66214908 | None:intergenic | 15.0% |
| !!! | AAAATTGATTTCTTAAATAG+TGG | - | chr4_1:66215154-66215173 | Msa0565310:intron | 15.0% |
| !!! | AATACATATGAAATTTTAAC+GGG | - | chr4_1:66215288-66215307 | Msa0565310:intron | 15.0% |
| !!! | AGATATTTACTTTTTAAAGA+AGG | - | chr4_1:66215361-66215380 | Msa0565310:intron | 15.0% |
| !!! | TTTTAATGATATCATTATTG+GGG | + | chr4_1:66216443-66216462 | None:intergenic | 15.0% |
| !!! | AAATTAAGATTCAATTTTGA+AGG | + | chr4_1:66217540-66217559 | None:intergenic | 15.0% |
| !!! | TATTTTTATTTTGCATTTTG+AGG | - | chr4_1:66217980-66217999 | Msa0565310:intron | 15.0% |
| !!! | AAGTATTTTATAAACACACT+TGG | - | chr4_1:66213241-66213260 | Msa0565310:intron | 20.0% |
| !!! | TAATAGTATTGAGATCTTTT+AGG | - | chr4_1:66213329-66213348 | Msa0565310:intron | 20.0% |
| !!! | AATAGTATTGAGATCTTTTA+GGG | - | chr4_1:66213330-66213349 | Msa0565310:intron | 20.0% |
| !! | ACTATGCATTTAAATTATGT+TGG | - | chr4_1:66213617-66213636 | Msa0565310:intron | 20.0% |
| !! | CTATGCATTTAAATTATGTT+GGG | - | chr4_1:66213618-66213637 | Msa0565310:intron | 20.0% |
| !!! | TGATATGTAAGTATTGATAT+TGG | + | chr4_1:66213738-66213757 | None:intergenic | 20.0% |
| !!! | GTTAGTTGAGAAATTTTATT+TGG | - | chr4_1:66213949-66213968 | Msa0565310:intron | 20.0% |
| !!! | GAACAATTTATTTTTTAAGG+AGG | - | chr4_1:66214190-66214209 | Msa0565310:CDS | 20.0% |
| !!! | AATACATTGTTTTTATTTCC+TGG | - | chr4_1:66214213-66214232 | Msa0565310:CDS | 20.0% |
| !! | GATAAAATGAAAACTAACTA+AGG | + | chr4_1:66214377-66214396 | None:intergenic | 20.0% |
| !!! | TAGTTAGTTTTCATTTTATC+TGG | - | chr4_1:66214377-66214396 | Msa0565310:intron | 20.0% |
| !! | GTATATCTTAACACAAAAAA+GGG | + | chr4_1:66214766-66214785 | None:intergenic | 20.0% |
| !! | TGTATATCTTAACACAAAAA+AGG | + | chr4_1:66214767-66214786 | None:intergenic | 20.0% |
| !! | TGAAACAGCAAAATATTATT+AGG | - | chr4_1:66215774-66215793 | Msa0565310:intron | 20.0% |
| !! | GATTATAACTTGATATTAAG+CGG | + | chr4_1:66216477-66216496 | None:intergenic | 20.0% |
| !!! | TAATGGTTATATCTTTTCTA+TGG | + | chr4_1:66216525-66216544 | None:intergenic | 20.0% |
| !! | TACCTCATTAATATAGTATT+TGG | - | chr4_1:66216700-66216719 | Msa0565310:intron | 20.0% |
| !! | TTTAAACGAACAAAATTGTT+TGG | + | chr4_1:66216731-66216750 | None:intergenic | 20.0% |
| !! | GAAGTCAAATTTATTCATAA+TGG | + | chr4_1:66216800-66216819 | None:intergenic | 20.0% |
| !!! | AAAGCTTTTATTTTCTTTGT+TGG | - | chr4_1:66216890-66216909 | Msa0565310:intron | 20.0% |
| !!! | TTTTATTTCGTCTTTATGTT+TGG | - | chr4_1:66216995-66217014 | Msa0565310:intron | 20.0% |
| !! | ACAATGATGATAAAAATACA+AGG | - | chr4_1:66217766-66217785 | Msa0565310:intron | 20.0% |
| !! | ATAAATTAATCCCTCTATTA+TGG | - | chr4_1:66217815-66217834 | Msa0565310:intron | 20.0% |
| !!! | TACTTTTGATTTTATTTTCC+AGG | - | chr4_1:66217876-66217895 | Msa0565310:intron | 20.0% |
| !!! | ACTTTTGATTTTATTTTCCA+GGG | - | chr4_1:66217877-66217896 | Msa0565310:intron | 20.0% |
| !! | AAAATTGTAAAGGATCAAAA+TGG | - | chr4_1:66217919-66217938 | Msa0565310:intron | 20.0% |
| !! | AGAAAAAGTAGATATATGTT+GGG | + | chr4_1:66218467-66218486 | None:intergenic | 20.0% |
| !! | TAGAAAAAGTAGATATATGT+TGG | + | chr4_1:66218468-66218487 | None:intergenic | 20.0% |
| ! | TATGCATGGATCAAATATAA+GGG | - | chr4_1:66213068-66213087 | Msa0565310:intron | 25.0% |
| ! | AAATATAAGGGACATGAAAT+GGG | - | chr4_1:66213080-66213099 | Msa0565310:intron | 25.0% |
| ! | TGAATATTGAAAACACTTAC+CGG | + | chr4_1:66213267-66213286 | None:intergenic | 25.0% |
| ! | ATAGTTCACATCAAAGAATA+AGG | + | chr4_1:66213602-66213621 | None:intergenic | 25.0% |
| ! | ATGAATGTTATGACATATGA+GGG | + | chr4_1:66213711-66213730 | None:intergenic | 25.0% |
| ! | TATGAATGTTATGACATATG+AGG | + | chr4_1:66213712-66213731 | None:intergenic | 25.0% |
| ! | TCAATATTCAGCAAAAAACA+AGG | + | chr4_1:66214283-66214302 | None:intergenic | 25.0% |
| ! | AAAACTAACTAAGGAAAAGA+AGG | + | chr4_1:66214368-66214387 | None:intergenic | 25.0% |
| !! | ATACTTTAAAAATGCTGACT+CGG | + | chr4_1:66214425-66214444 | None:intergenic | 25.0% |
| ! | TGGTGTATATATGTGAAAAT+TGG | - | chr4_1:66214561-66214580 | Msa0565310:intron | 25.0% |
| ! | GGTGTATATATGTGAAAATT+GGG | - | chr4_1:66214562-66214581 | Msa0565310:intron | 25.0% |
| ! | CAAGAAAATAAGATAGGAAT+TGG | + | chr4_1:66214653-66214672 | None:intergenic | 25.0% |
| !!! | CAATTCCTATCTTATTTTCT+TGG | - | chr4_1:66214651-66214670 | Msa0565310:intron | 25.0% |
| ! | TAATTTAATCATCTCTCGTA+GGG | + | chr4_1:66214832-66214851 | None:intergenic | 25.0% |
| ! | ATAATTTAATCATCTCTCGT+AGG | + | chr4_1:66214833-66214852 | None:intergenic | 25.0% |
| ! | TTGTAATTTAAGCATCTCAT+AGG | - | chr4_1:66215317-66215336 | Msa0565310:intron | 25.0% |
| ! | TGTAATTTAAGCATCTCATA+GGG | - | chr4_1:66215318-66215337 | Msa0565310:intron | 25.0% |
| ! | TAGAAAATGTATGACAACAA+AGG | - | chr4_1:66215588-66215607 | Msa0565310:intron | 25.0% |
| ! | GTAATTCGTGTACTATTTAT+AGG | - | chr4_1:66215610-66215629 | Msa0565310:intron | 25.0% |
| !!! | TTTTTTATCGAGTGTTCTAT+GGG | + | chr4_1:66215876-66215895 | None:intergenic | 25.0% |
| !!! | TTTTTTTATCGAGTGTTCTA+TGG | + | chr4_1:66215877-66215896 | None:intergenic | 25.0% |
| ! | TTGTAGGTAGTAAGAATTTA+GGG | + | chr4_1:66215902-66215921 | None:intergenic | 25.0% |
| ! | TTTGTAGGTAGTAAGAATTT+AGG | + | chr4_1:66215903-66215922 | None:intergenic | 25.0% |
| !!! | ATAATGTTTTTGGGGTTTAA+TGG | + | chr4_1:66216542-66216561 | None:intergenic | 25.0% |
| !!! | TAGGGTTTATAATGTTTTTG+GGG | + | chr4_1:66216550-66216569 | None:intergenic | 25.0% |
| !! | CTAGGGTTTATAATGTTTTT+GGG | + | chr4_1:66216551-66216570 | None:intergenic | 25.0% |
| !!! | TCTAGGGTTTATAATGTTTT+TGG | + | chr4_1:66216552-66216571 | None:intergenic | 25.0% |
| ! | AAAAACATTATAAACCCTAG+AGG | - | chr4_1:66216551-66216570 | Msa0565310:intron | 25.0% |
| !!! | AAGTGTTTTTTTTCCTTTTG+GGG | + | chr4_1:66216652-66216671 | None:intergenic | 25.0% |
| !!! | CAAGTGTTTTTTTTCCTTTT+GGG | + | chr4_1:66216653-66216672 | None:intergenic | 25.0% |
| !!! | TCAAGTGTTTTTTTTCCTTT+TGG | + | chr4_1:66216654-66216673 | None:intergenic | 25.0% |
| ! | AACATCAAAATCAACCAAAA+AGG | - | chr4_1:66217155-66217174 | Msa0565310:intron | 25.0% |
| ! | TATGTGTTTGTTTGTTTGTT+TGG | - | chr4_1:66217289-66217308 | Msa0565310:intron | 25.0% |
| !! | TTGCTAATCATATTTTTCAC+TGG | - | chr4_1:66217498-66217517 | Msa0565310:intron | 25.0% |
| !! | TATCCATATTGATGTAGTTT+TGG | - | chr4_1:66217582-66217601 | Msa0565310:intron | 25.0% |
| ! | AATCCAAAACTACATCAATA+TGG | + | chr4_1:66217588-66217607 | None:intergenic | 25.0% |
| !!! | TTGATGTAGTTTTGGATTTA+TGG | - | chr4_1:66217590-66217609 | Msa0565310:intron | 25.0% |
| !!! | TGATGTAGTTTTGGATTTAT+GGG | - | chr4_1:66217591-66217610 | Msa0565310:intron | 25.0% |
| ! | AAAATTGTGAAGAACCAAAA+TGG | + | chr4_1:66217723-66217742 | None:intergenic | 25.0% |
| !! | AAGTAGACATTTTTATACCA+GGG | + | chr4_1:66217861-66217880 | None:intergenic | 25.0% |
| !! | AAAGTAGACATTTTTATACC+AGG | + | chr4_1:66217862-66217881 | None:intergenic | 25.0% |
| ! | AAGGACAATTCACAATTAAA+TGG | - | chr4_1:66218042-66218061 | Msa0565310:CDS | 25.0% |
| ! | TAGTACATAAATAGAGACAA+TGG | - | chr4_1:66218278-66218297 | Msa0565310:intron | 25.0% |
| ! | TATAGCATGTCATGTATATA+TGG | + | chr4_1:66218307-66218326 | None:intergenic | 25.0% |
| ! | CTGTTATTGAGAATGTTTAT+TGG | - | chr4_1:66218522-66218541 | Msa0565310:five_prime_UTR | 25.0% |
| ! | TATTGAGAATGTTTATTGGA+AGG | - | chr4_1:66218526-66218545 | Msa0565310:five_prime_UTR | 25.0% |
| TACATGATGATATCTATGCA+TGG | - | chr4_1:66213054-66213073 | Msa0565310:intron | 30.0% | |
| CTATGCATGGATCAAATATA+AGG | - | chr4_1:66213067-66213086 | Msa0565310:intron | 30.0% | |
| CAAATATAAGGGACATGAAA+TGG | - | chr4_1:66213079-66213098 | Msa0565310:intron | 30.0% | |
| TTGATGAGAAGAAGTAACAT+AGG | + | chr4_1:66213160-66213179 | None:intergenic | 30.0% | |
| ! | ATTTTATAAACACACTTGGC+CGG | - | chr4_1:66213245-66213264 | Msa0565310:intron | 30.0% |
| TTTGGTTGGAGAATTATAGT+AGG | - | chr4_1:66213413-66213432 | Msa0565310:intron | 30.0% | |
| ATTATAGTAGGCACCATAAT+TGG | - | chr4_1:66213425-66213444 | Msa0565310:intron | 30.0% | |
| TGATCCTAGAAATCCAATTA+TGG | + | chr4_1:66213441-66213460 | None:intergenic | 30.0% | |
| TGCATCAAATCCAACAATTA+GGG | + | chr4_1:66213519-66213538 | None:intergenic | 30.0% | |
| TTGCATCAAATCCAACAATT+AGG | + | chr4_1:66213520-66213539 | None:intergenic | 30.0% | |
| AAAACGGGCAAATAGAAAAA+CGG | - | chr4_1:66213997-66214016 | Msa0565310:intron | 30.0% | |
| ! | ACTACTATCTATCTTTTCAC+TGG | - | chr4_1:66214063-66214082 | Msa0565310:CDS | 30.0% |
| TATGCGTGCAAGTAAATATT+TGG | - | chr4_1:66214242-66214261 | Msa0565310:intron | 30.0% | |
| GAAAAGAAGGATACTTAACA+AGG | + | chr4_1:66214355-66214374 | None:intergenic | 30.0% | |
| !! | ATAGGAATTGGAAAGTATTG+TGG | + | chr4_1:66214641-66214660 | None:intergenic | 30.0% |
| !!! | ACCAGTGCATGTTATTTTAT+CGG | - | chr4_1:66214674-66214693 | Msa0565310:intron | 30.0% |
| TCTATCTTACTTTGAACTAG+AGG | + | chr4_1:66214799-66214818 | None:intergenic | 30.0% | |
| GTAATTTAAGCATCTCATAG+GGG | - | chr4_1:66215319-66215338 | Msa0565310:intron | 30.0% | |
| GGATGACATGTTAGAAAATT+TGG | - | chr4_1:66215482-66215501 | Msa0565310:intron | 30.0% | |
| ! | TTTTTATCGAGTGTTCTATG+GGG | + | chr4_1:66215875-66215894 | None:intergenic | 30.0% |
| TGTAGGTAGTAAGAATTTAG+GGG | + | chr4_1:66215901-66215920 | None:intergenic | 30.0% | |
| ATTCTTACTACCTACAAACA+AGG | - | chr4_1:66215905-66215924 | Msa0565310:intron | 30.0% | |
| !!! | GATTTTTTGTGGTTTTCGAA+AGG | + | chr4_1:66216278-66216297 | None:intergenic | 30.0% |
| TAATGATATCATTATTGGGG+TGG | + | chr4_1:66216440-66216459 | None:intergenic | 30.0% | |
| TTGATATTAAGCGGAACTAT+CGG | + | chr4_1:66216468-66216487 | None:intergenic | 30.0% | |
| GGCCAAATACTATATTAATG+AGG | + | chr4_1:66216705-66216724 | None:intergenic | 30.0% | |
| GATAATCATATGAGACACAT+TGG | + | chr4_1:66217117-66217136 | None:intergenic | 30.0% | |
| GATGTTCAACATATATCATG+AGG | + | chr4_1:66217141-66217160 | None:intergenic | 30.0% | |
| ! | AAGAGGAATTTTGTCCTTTT+TGG | + | chr4_1:66217172-66217191 | None:intergenic | 30.0% |
| ACAAAATTCCTCTTTCTAAC+CGG | - | chr4_1:66217178-66217197 | Msa0565310:intron | 30.0% | |
| TTCAGTTAACGCTTTCTTAA+AGG | - | chr4_1:66217623-66217642 | Msa0565310:intron | 30.0% | |
| TCAGTTAACGCTTTCTTAAA+GGG | - | chr4_1:66217624-66217643 | Msa0565310:intron | 30.0% | |
| AAAAGAAACCCTTACTAAGA+AGG | - | chr4_1:66217662-66217681 | Msa0565310:intron | 30.0% | |
| TTAAGCAACCTTCTTAGTAA+GGG | + | chr4_1:66217673-66217692 | None:intergenic | 30.0% | |
| TTTAAGCAACCTTCTTAGTA+AGG | + | chr4_1:66217674-66217693 | None:intergenic | 30.0% | |
| ! | TTTAGACTGAAGATCCATTT+TGG | - | chr4_1:66217706-66217725 | Msa0565310:intron | 30.0% |
| TCTATGATGTAAGACTGTTA+AGG | + | chr4_1:66217796-66217815 | None:intergenic | 30.0% | |
| ! | TTATTTTCCAGGGACTAAAT+TGG | - | chr4_1:66217887-66217906 | Msa0565310:intron | 30.0% |
| ATTAGAGACGAAATTTAGAG+TGG | - | chr4_1:66218106-66218125 | Msa0565310:CDS | 30.0% | |
| ! | TTAGAGACGAAATTTAGAGT+GGG | - | chr4_1:66218107-66218126 | Msa0565310:CDS | 30.0% |
| TGTCATTAGATTTAGACGTT+TGG | + | chr4_1:66218168-66218187 | None:intergenic | 30.0% | |
| ATATTTGTGCCTCAGATATT+AGG | - | chr4_1:66218324-66218343 | Msa0565310:CDS | 30.0% | |
| CTACACTTGATCTTCAAATA+GGG | - | chr4_1:66218357-66218376 | Msa0565310:CDS | 30.0% | |
| TACACTTGATCTTCAAATAG+GGG | - | chr4_1:66218358-66218377 | Msa0565310:CDS | 30.0% | |
| ! | TTTTCTTGGTAGATTGGTAT+TGG | + | chr4_1:66218405-66218424 | None:intergenic | 30.0% |
| TACCAATCTACCAAGAAAAA+AGG | - | chr4_1:66218406-66218425 | Msa0565310:CDS | 30.0% | |
| !!! | TACCTTTTTTCTTGGTAGAT+TGG | + | chr4_1:66218411-66218430 | None:intergenic | 30.0% |
| AATGTTTATTGGAAGGAACT+TGG | - | chr4_1:66218533-66218552 | Msa0565310:five_prime_UTR | 30.0% | |
| GACATGAAATGGGTAATTCT+CGG | - | chr4_1:66213090-66213109 | Msa0565310:intron | 35.0% | |
| TAGGGTTATATATGAGCATG+TGG | - | chr4_1:66213348-66213367 | Msa0565310:intron | 35.0% | |
| ! | TTTTGAACTGACGATCTTTG+TGG | - | chr4_1:66213372-66213391 | Msa0565310:intron | 35.0% |
| !! | GGATTTCTAGGATCATCATT+TGG | - | chr4_1:66213446-66213465 | Msa0565310:intron | 35.0% |
| AATAAAATGCATGTGTGCTG+TGG | - | chr4_1:66213662-66213681 | Msa0565310:intron | 35.0% | |
| TGTTATGACATATGAGGGAA+TGG | + | chr4_1:66213706-66213725 | None:intergenic | 35.0% | |
| TCTGGTACAAACTTATGATG+CGG | - | chr4_1:66214395-66214414 | Msa0565310:intron | 35.0% | |
| AAGAGAAAGAAGTAGACGTA+TGG | + | chr4_1:66214538-66214557 | None:intergenic | 35.0% | |
| CTGGTCCAAGAAAATAAGAT+AGG | + | chr4_1:66214659-66214678 | None:intergenic | 35.0% | |
| TCCGATAAAATAACATGCAC+TGG | + | chr4_1:66214678-66214697 | None:intergenic | 35.0% | |
| AAATAGTGGCTTGAAGTTTC+TGG | - | chr4_1:66215168-66215187 | Msa0565310:intron | 35.0% | |
| ! | TTACCCTAATCAGCTTGTTT+AGG | - | chr4_1:66215450-66215469 | Msa0565310:intron | 35.0% |
| ! | TACCCTAATCAGCTTGTTTA+GGG | - | chr4_1:66215451-66215470 | Msa0565310:intron | 35.0% |
| TCATGTGTGAGTGTAACATT+CGG | + | chr4_1:66215694-66215713 | None:intergenic | 35.0% | |
| ! | TTTTATCGAGTGTTCTATGG+GGG | + | chr4_1:66215874-66215893 | None:intergenic | 35.0% |
| !! | TGTTTTTGCTCCTTGTTTGT+AGG | + | chr4_1:66215918-66215937 | None:intergenic | 35.0% |
| !!! | TCTGGTTTTTTTTTTCCTGC+TGG | + | chr4_1:66215980-66215999 | None:intergenic | 35.0% |
| !!! | GTTTTTTTGTCATCAGTGCT+GGG | + | chr4_1:66216046-66216065 | None:intergenic | 35.0% |
| TCTGCTAGTAATTGTTTGCT+AGG | + | chr4_1:66216071-66216090 | None:intergenic | 35.0% | |
| !!! | CTACTGTAGGTGATTTTTTG+TGG | + | chr4_1:66216289-66216308 | None:intergenic | 35.0% |
| ATCAAATAAAAGCTCTGTCG+TGG | + | chr4_1:66216405-66216424 | None:intergenic | 35.0% | |
| ACGAACAAAATTGTTTGGAG+TGG | + | chr4_1:66216726-66216745 | None:intergenic | 35.0% | |
| ! | AGCTACCACAATTTTTACGA+GGG | + | chr4_1:66217023-66217042 | None:intergenic | 35.0% |
| ! | AAGCTACCACAATTTTTACG+AGG | + | chr4_1:66217024-66217043 | None:intergenic | 35.0% |
| ! | ATGTTATACCGGTTAGAAAG+AGG | + | chr4_1:66217189-66217208 | None:intergenic | 35.0% |
| ACATGTAGCACATGTTATAC+CGG | + | chr4_1:66217200-66217219 | None:intergenic | 35.0% | |
| AATCATAGTCAATCACAGGA+AGG | + | chr4_1:66217389-66217408 | None:intergenic | 35.0% | |
| GCTAAATCATAGTCAATCAC+AGG | + | chr4_1:66217393-66217412 | None:intergenic | 35.0% | |
| TTCCAACCAATGTTAATGCT+TGG | - | chr4_1:66217420-66217439 | Msa0565310:intron | 35.0% | |
| TTCCAAGCATTAACATTGGT+TGG | + | chr4_1:66217425-66217444 | None:intergenic | 35.0% | |
| CTGATTCCAAGCATTAACAT+TGG | + | chr4_1:66217429-66217448 | None:intergenic | 35.0% | |
| TTAATGCTTGGAATCAGTCT+TGG | - | chr4_1:66217432-66217451 | Msa0565310:intron | 35.0% | |
| !! | TCAATCTCATTTTTCCTGAC+TGG | - | chr4_1:66217463-66217482 | Msa0565310:intron | 35.0% |
| AAAGTTGTTATCATCCAGTC+AGG | + | chr4_1:66217480-66217499 | None:intergenic | 35.0% | |
| !!! | AGTTTTGGATTTATGGGAAC+AGG | - | chr4_1:66217597-66217616 | Msa0565310:intron | 35.0% |
| !! | TCTTAAAGGGTGTTAACACT+TGG | - | chr4_1:66217637-66217656 | Msa0565310:intron | 35.0% |
| ! | GGTTCTTCACAATTTTTGTG+CGG | - | chr4_1:66217727-66217746 | Msa0565310:intron | 35.0% |
| ! | GTTCTTCACAATTTTTGTGC+GGG | - | chr4_1:66217728-66217747 | Msa0565310:intron | 35.0% |
| CCTTAACTCACCATAATAGA+GGG | + | chr4_1:66217828-66217847 | None:intergenic | 35.0% | |
| TCCTTAACTCACCATAATAG+AGG | + | chr4_1:66217829-66217848 | None:intergenic | 35.0% | |
| GTTAAGGACTAATTTATCCC+TGG | - | chr4_1:66217841-66217860 | Msa0565310:intron | 35.0% | |
| ! | GATCCTTTACAATTTTCGTG+CGG | + | chr4_1:66217915-66217934 | None:intergenic | 35.0% |
| ATCTTCTGTCCTAATATCTG+AGG | + | chr4_1:66218336-66218355 | None:intergenic | 35.0% | |
| GCTACACTTGATCTTCAAAT+AGG | - | chr4_1:66218356-66218375 | Msa0565310:CDS | 35.0% | |
| TCTACCAAGAAAAAAGGTAG+TGG | - | chr4_1:66218412-66218431 | Msa0565310:CDS | 35.0% | |
| CTACCAAGAAAAAAGGTAGT+GGG | - | chr4_1:66218413-66218432 | Msa0565310:CDS | 35.0% | |
| !!! | TTTCCCACTACCTTTTTTCT+TGG | + | chr4_1:66218419-66218438 | None:intergenic | 35.0% |
| AGTAGATATATGTTGGGACA+TGG | + | chr4_1:66218461-66218480 | None:intergenic | 35.0% | |
| TGAAAATGCCATGAATGTGT+AGG | - | chr4_1:66218496-66218515 | Msa0565310:CDS | 35.0% | |
| AACAGAAACCTACACATTCA+TGG | + | chr4_1:66218507-66218526 | None:intergenic | 35.0% | |
| GGCACCATAATTGGATTTCT+AGG | - | chr4_1:66213434-66213453 | Msa0565310:intron | 40.0% | |
| CCAACAATTAGGGTAAGCAT+GGG | + | chr4_1:66213509-66213528 | None:intergenic | 40.0% | |
| TCCAACAATTAGGGTAAGCA+TGG | + | chr4_1:66213510-66213529 | None:intergenic | 40.0% | |
| AAAGAAGTAGACGTATGGCA+TGG | + | chr4_1:66214533-66214552 | None:intergenic | 40.0% | |
| GTCTACTTCTTTCTCTTTGC+TGG | - | chr4_1:66214541-66214560 | Msa0565310:intron | 40.0% | |
| ! | ACCCTAATCAGCTTGTTTAG+GGG | - | chr4_1:66215452-66215471 | Msa0565310:intron | 40.0% |
| ATACATGATGCGAGACACTT+CGG | - | chr4_1:66215643-66215662 | Msa0565310:intron | 40.0% | |
| ! | TGAGTGTAACATTCGGTGAA+AGG | + | chr4_1:66215687-66215706 | None:intergenic | 40.0% |
| ! | GAGGAAAAAGAGTACAACGA+GGG | - | chr4_1:66215829-66215848 | Msa0565310:intron | 40.0% |
| ! | AGGAAAAAGAGTACAACGAG+GGG | - | chr4_1:66215830-66215849 | Msa0565310:intron | 40.0% |
| TTTATCGAGTGTTCTATGGG+GGG | + | chr4_1:66215873-66215892 | None:intergenic | 40.0% | |
| !!! | TTTTTTTCCTGCTGGTATCC+TGG | + | chr4_1:66215972-66215991 | None:intergenic | 40.0% |
| !!! | GGTTTTTTTGTCATCAGTGC+TGG | + | chr4_1:66216047-66216066 | None:intergenic | 40.0% |
| ! | GCTAGTAATTGTTTGCTAGG+CGG | + | chr4_1:66216068-66216087 | None:intergenic | 40.0% |
| !!! | TGACGTGCTTGTTTTATGAG+TGG | + | chr4_1:66216354-66216373 | None:intergenic | 40.0% |
| ! | CTACCACAATTTTTACGAGG+GGG | + | chr4_1:66217021-66217040 | None:intergenic | 40.0% |
| ! | GCTACCACAATTTTTACGAG+GGG | + | chr4_1:66217022-66217041 | None:intergenic | 40.0% |
| TGGTGTGAAGTCATGATTAC+TGG | - | chr4_1:66217309-66217328 | Msa0565310:intron | 40.0% | |
| TGTGAAGTCATGATTACTGG+TGG | - | chr4_1:66217312-66217331 | Msa0565310:intron | 40.0% | |
| CCCTCTATTATGGTGAGTTA+AGG | - | chr4_1:66217825-66217844 | Msa0565310:intron | 40.0% | |
| AGCTTCCTGGAATTGTAACA+TGG | + | chr4_1:66218022-66218041 | None:intergenic | 40.0% | |
| GTTACAATTCCAGGAAGCTA+AGG | - | chr4_1:66218023-66218042 | Msa0565310:CDS | 40.0% | |
| GGGTAATTCTCGGAAGATCA+AGG | - | chr4_1:66213100-66213119 | Msa0565310:intron | 45.0% | |
| !!! | TGGAAGCTGGTGTTGCTTTT+TGG | + | chr4_1:66213191-66213210 | None:intergenic | 45.0% |
| AGCATGAATATCAACCCCTC+TGG | + | chr4_1:66213220-66213239 | None:intergenic | 45.0% | |
| TGCATCCAGGGGATGAAATT+TGG | - | chr4_1:66213395-66213414 | Msa0565310:intron | 45.0% | |
| TCCAGGGGATGAAATTTGGT+TGG | - | chr4_1:66213399-66213418 | Msa0565310:intron | 45.0% | |
| TCCAACCAAATTTCATCCCC+TGG | + | chr4_1:66213403-66213422 | None:intergenic | 45.0% | |
| GGATCATCATTTGGCACTGT+AGG | - | chr4_1:66213455-66213474 | Msa0565310:intron | 45.0% | |
| TCATCATTTGGCACTGTAGG+AGG | - | chr4_1:66213458-66213477 | Msa0565310:intron | 45.0% | |
| CCCATGCTTACCCTAATTGT+TGG | - | chr4_1:66213506-66213525 | Msa0565310:intron | 45.0% | |
| GTGTGCTGTGGATGATACAT+AGG | - | chr4_1:66213674-66213693 | Msa0565310:intron | 45.0% | |
| AAGTAGACGTATGGCATGGT+TGG | + | chr4_1:66214529-66214548 | None:intergenic | 45.0% | |
| AACATTGAGTGACGCTGTGA+CGG | + | chr4_1:66214604-66214623 | None:intergenic | 45.0% | |
| CCCCCTAAACAAGCTGATTA+GGG | + | chr4_1:66215456-66215475 | None:intergenic | 45.0% | |
| ! | CCCTAATCAGCTTGTTTAGG+GGG | - | chr4_1:66215453-66215472 | Msa0565310:intron | 45.0% |
| ! | TAATCAGCTTGTTTAGGGGG+CGG | - | chr4_1:66215456-66215475 | Msa0565310:intron | 45.0% |
| CTACTCTTGCTCTCATGCAT+TGG | - | chr4_1:66215529-66215548 | Msa0565310:intron | 45.0% | |
| ! | GGAGGAAAAAGAGTACAACG+AGG | - | chr4_1:66215828-66215847 | Msa0565310:intron | 45.0% |
| GGGGGGTGGCTATTATTATA+AGG | + | chr4_1:66215856-66215875 | None:intergenic | 45.0% | |
| TGTTATGGTGTGTGATGCTG+GGG | + | chr4_1:66216096-66216115 | None:intergenic | 45.0% | |
| CTGTTATGGTGTGTGATGCT+GGG | + | chr4_1:66216097-66216116 | None:intergenic | 45.0% | |
| !!! | GTTTTGGGGTTGCTTGTTTG+CGG | + | chr4_1:66216162-66216181 | None:intergenic | 45.0% |
| !!! | GTTTTTGGCAGTTTTGCTGG+TGG | + | chr4_1:66216213-66216232 | None:intergenic | 45.0% |
| !!! | CTGGTTTTTGGCAGTTTTGC+TGG | + | chr4_1:66216216-66216235 | None:intergenic | 45.0% |
| ! | GTGGTTTTCGAAAGGCAGTA+GGG | + | chr4_1:66216270-66216289 | None:intergenic | 45.0% |
| ! | TGTGGTTTTCGAAAGGCAGT+AGG | + | chr4_1:66216271-66216290 | None:intergenic | 45.0% |
| TTACTGTCTTGGGGCTGTTA+CGG | + | chr4_1:66216317-66216336 | None:intergenic | 45.0% | |
| !!! | GCTTGTTTTATGAGTGGTGC+TGG | + | chr4_1:66216348-66216367 | None:intergenic | 45.0% |
| TAAAAGCTCTGTCGTGGCAA+TGG | + | chr4_1:66216399-66216418 | None:intergenic | 45.0% | |
| TTCTTCGTGTGTTGCAGCAA+TGG | + | chr4_1:66216577-66216596 | None:intergenic | 45.0% | |
| ! | GTGAATGGCTGTGTTGACAT+GGG | - | chr4_1:66216613-66216632 | Msa0565310:intron | 45.0% |
| ! | TGAATGGCTGTGTTGACATG+GGG | - | chr4_1:66216614-66216633 | Msa0565310:intron | 45.0% |
| AATAGGCTAGACACAAGCAG+CGG | + | chr4_1:66217049-66217068 | None:intergenic | 45.0% | |
| TTGTGTCTAGCCTATTGCCT+TGG | - | chr4_1:66217053-66217072 | Msa0565310:intron | 45.0% | |
| AGTCATGATTACTGGTGGAG+CGG | - | chr4_1:66217317-66217336 | Msa0565310:intron | 45.0% | |
| GTCAATCACAGGAAGGTCAA+GGG | + | chr4_1:66217382-66217401 | None:intergenic | 45.0% | |
| AGTCAATCACAGGAAGGTCA+AGG | + | chr4_1:66217383-66217402 | None:intergenic | 45.0% | |
| GCACCGCACGAAAATTGTAA+AGG | - | chr4_1:66217909-66217928 | Msa0565310:intron | 45.0% | |
| GTGAATTGTCCTTAGCTTCC+TGG | + | chr4_1:66218035-66218054 | None:intergenic | 45.0% | |
| !! | TATATAAATATATAGATATA+CGG | + | chr4_1:66213036-66213055 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTGAAAAAA+CGG | - | chr4_1:66213981-66214000 | Msa0565310:intron | 5.0% |
| !! | AACAAAAATTATAATAATTT+AGG | - | chr4_1:66214485-66214504 | Msa0565310:intron | 5.0% |
| !! | ACAAAAATTATAATAATTTA+GGG | - | chr4_1:66214486-66214505 | Msa0565310:intron | 5.0% |
| !! | ATGTTTAATTATATTAAAAT+GGG | + | chr4_1:66214911-66214930 | None:intergenic | 5.0% |
| !! | AATATTTATTTATATTCATT+TGG | - | chr4_1:66215255-66215274 | Msa0565310:intron | 5.0% |
| !! | ATATTTATTTATATTCATTT+GGG | - | chr4_1:66215256-66215275 | Msa0565310:intron | 5.0% |
| CAGCTTCCAATGAGACCAGA+GGG | - | chr4_1:66213202-66213221 | Msa0565310:CDS | 50.0% | |
| AGCTTCCAATGAGACCAGAG+GGG | - | chr4_1:66213203-66213222 | Msa0565310:CDS | 50.0% | |
| ATCAACCCCTCTGGTCTCAT+TGG | + | chr4_1:66213211-66213230 | None:intergenic | 50.0% | |
| ACGATCTTTGTGGTGCATCC+AGG | - | chr4_1:66213382-66213401 | Msa0565310:intron | 50.0% | |
| CGATCTTTGTGGTGCATCCA+GGG | - | chr4_1:66213383-66213402 | Msa0565310:intron | 50.0% | |
| GATCTTTGTGGTGCATCCAG+GGG | - | chr4_1:66213384-66213403 | Msa0565310:intron | 50.0% | |
| ! | TTTGGCACTGTAGGAGGTGT+TGG | - | chr4_1:66213464-66213483 | Msa0565310:intron | 50.0% |
| GACGTATGGCATGGTTGGAA+GGG | + | chr4_1:66214524-66214543 | None:intergenic | 50.0% | |
| AGACGTATGGCATGGTTGGA+AGG | + | chr4_1:66214525-66214544 | None:intergenic | 50.0% | |
| AATTGGGCCAGTGACCTAGA+TGG | - | chr4_1:66214578-66214597 | Msa0565310:intron | 50.0% | |
| GCCCCCTAAACAAGCTGATT+AGG | + | chr4_1:66215457-66215476 | None:intergenic | 50.0% | |
| ACGAGAAACGCAAACCTGCA+GGG | - | chr4_1:66215807-66215826 | Msa0565310:intron | 50.0% | |
| ! | GTACTCTTTTTCCTCCCTGC+AGG | + | chr4_1:66215824-66215843 | None:intergenic | 50.0% |
| !! | TCCTGGCAGCTTGTTGCTTT+GGG | + | chr4_1:66215955-66215974 | None:intergenic | 50.0% |
| !! | ATCCTGGCAGCTTGTTGCTT+TGG | + | chr4_1:66215956-66215975 | None:intergenic | 50.0% |
| GCTGTTATGGTGTGTGATGC+TGG | + | chr4_1:66216098-66216117 | None:intergenic | 50.0% | |
| ! | CGGTTTTTCCCTGCTGTTGT+GGG | + | chr4_1:66216142-66216161 | None:intergenic | 50.0% |
| TCTGCTGCTGCCAAAAACGA+AGG | - | chr4_1:66216185-66216204 | Msa0565310:intron | 50.0% | |
| TACTGTCTTGGGGCTGTTAC+GGG | + | chr4_1:66216316-66216335 | None:intergenic | 50.0% | |
| GAACCCTCGTTACTGTCTTG+GGG | + | chr4_1:66216326-66216345 | None:intergenic | 50.0% | |
| GGAACCCTCGTTACTGTCTT+GGG | + | chr4_1:66216327-66216346 | None:intergenic | 50.0% | |
| TGGAACCCTCGTTACTGTCT+TGG | + | chr4_1:66216328-66216347 | None:intergenic | 50.0% | |
| GCAATGGAGTATGACGCGTT+TGG | + | chr4_1:66216383-66216402 | None:intergenic | 50.0% | |
| CATTATTGGGGTGGACGAGA+TGG | + | chr4_1:66216431-66216450 | None:intergenic | 50.0% | |
| TGTTGCAGCAATGGCCTCTA+GGG | + | chr4_1:66216568-66216587 | None:intergenic | 50.0% | |
| ACGAAGAACCTTGTGTGTCC+AGG | - | chr4_1:66216589-66216608 | Msa0565310:intron | 50.0% | |
| CGAAGAACCTTGTGTGTCCA+GGG | - | chr4_1:66216590-66216609 | Msa0565310:intron | 50.0% | |
| GAAGAACCTTGTGTGTCCAG+GGG | - | chr4_1:66216591-66216610 | Msa0565310:intron | 50.0% | |
| ! | GGTGAATGGCTGTGTTGACA+TGG | - | chr4_1:66216612-66216631 | Msa0565310:intron | 50.0% |
| ! | GTGTTGACATGGGGTAGCAT+TGG | - | chr4_1:66216623-66216642 | Msa0565310:intron | 50.0% |
| !! | GTAGCATTGGCTACCCCAAA+AGG | - | chr4_1:66216636-66216655 | Msa0565310:intron | 50.0% |
| TGGCCCCCTCGTAAAAATTG+TGG | - | chr4_1:66217015-66217034 | Msa0565310:intron | 50.0% | |
| AGCTCAAGAGCCAAGGCAAT+AGG | + | chr4_1:66217066-66217085 | None:intergenic | 50.0% | |
| GTCATGATTACTGGTGGAGC+GGG | - | chr4_1:66217318-66217337 | Msa0565310:intron | 50.0% | |
| TCACAGGAAGGTCAAGGGTT+GGG | + | chr4_1:66217377-66217396 | None:intergenic | 50.0% | |
| ATCACAGGAAGGTCAAGGGT+TGG | + | chr4_1:66217378-66217397 | None:intergenic | 50.0% | |
| CCTCTGGTCTCATTGGAAGC+TGG | + | chr4_1:66213204-66213223 | None:intergenic | 55.0% | |
| CCAGCTTCCAATGAGACCAG+AGG | - | chr4_1:66213201-66213220 | Msa0565310:CDS | 55.0% | |
| CTTGCACGCATACACACTCC+AGG | + | chr4_1:66214234-66214253 | None:intergenic | 55.0% | |
| CACGAGAAACGCAAACCTGC+AGG | - | chr4_1:66215806-66215825 | Msa0565310:intron | 55.0% | |
| AGAAACGCAAACCTGCAGGG+AGG | - | chr4_1:66215810-66215829 | Msa0565310:intron | 55.0% | |
| ATCGAGTGTTCTATGGGGGG+TGG | + | chr4_1:66215870-66215889 | None:intergenic | 55.0% | |
| !! | CAGCTTGTTGCTTTGGGTGC+TGG | + | chr4_1:66215949-66215968 | None:intergenic | 55.0% |
| ACCCAAAGCAACAAGCTGCC+AGG | - | chr4_1:66215951-66215970 | Msa0565310:intron | 55.0% | |
| !! | TGTTGTGGGTGTTGGTGCAG+GGG | + | chr4_1:66216128-66216147 | None:intergenic | 55.0% |
| !! | CTGTTGTGGGTGTTGGTGCA+GGG | + | chr4_1:66216129-66216148 | None:intergenic | 55.0% |
| CACCAACACCCACAACAGCA+GGG | - | chr4_1:66216131-66216150 | Msa0565310:intron | 55.0% | |
| TTCCCTGCTGTTGTGGGTGT+TGG | + | chr4_1:66216136-66216155 | None:intergenic | 55.0% | |
| ! | GCGGTTTTTCCCTGCTGTTG+TGG | + | chr4_1:66216143-66216162 | None:intergenic | 55.0% |
| !! | GCAGCAGCAGAGCTGTTTTG+GGG | + | chr4_1:66216176-66216195 | None:intergenic | 55.0% |
| !! | GGCAGCAGCAGAGCTGTTTT+GGG | + | chr4_1:66216177-66216196 | None:intergenic | 55.0% |
| ! | TGGCAGCAGCAGAGCTGTTT+TGG | + | chr4_1:66216178-66216197 | None:intergenic | 55.0% |
| !!! | CTGTGCGGTCTGCTGGTTTT+TGG | + | chr4_1:66216228-66216247 | None:intergenic | 55.0% |
| GTCTGCCTACAGCATCTGTG+CGG | + | chr4_1:66216243-66216262 | None:intergenic | 55.0% | |
| !! | TGTTACGGGTGGGCTACTGT+AGG | + | chr4_1:66216302-66216321 | None:intergenic | 55.0% |
| ACAGCCCCAAGACAGTAACG+AGG | - | chr4_1:66216319-66216338 | Msa0565310:intron | 55.0% | |
| CAGCCCCAAGACAGTAACGA+GGG | - | chr4_1:66216320-66216339 | Msa0565310:intron | 55.0% | |
| TATTGGGGTGGACGAGATGG+TGG | + | chr4_1:66216428-66216447 | None:intergenic | 55.0% | |
| GTGTTGCAGCAATGGCCTCT+AGG | + | chr4_1:66216569-66216588 | None:intergenic | 55.0% | |
| CATTCACCCCTGGACACACA+AGG | + | chr4_1:66216600-66216619 | None:intergenic | 55.0% | |
| CTTGTGTGTCCAGGGGTGAA+TGG | - | chr4_1:66216598-66216617 | Msa0565310:intron | 55.0% | |
| TCAACACAGCCATTCACCCC+TGG | + | chr4_1:66216610-66216629 | None:intergenic | 55.0% | |
| GATGCACAGCTCAAGAGCCA+AGG | + | chr4_1:66217073-66217092 | None:intergenic | 55.0% | |
| ! | TGCGGTGCCAATTTAGTCCC+TGG | + | chr4_1:66217897-66217916 | None:intergenic | 55.0% |
| !! | GGCACTGTAGGAGGTGTTGG+CGG | - | chr4_1:66213467-66213486 | Msa0565310:intron | 60.0% |
| !! | GCACTGTAGGAGGTGTTGGC+GGG | - | chr4_1:66213468-66213487 | Msa0565310:intron | 60.0% |
| !! | CACTGTAGGAGGTGTTGGCG+GGG | - | chr4_1:66213469-66213488 | Msa0565310:intron | 60.0% |
| !! | ACTGTAGGAGGTGTTGGCGG+GGG | - | chr4_1:66213470-66213489 | Msa0565310:intron | 60.0% |
| GTGACGGCCATCTAGGTCAC+TGG | + | chr4_1:66214588-66214607 | None:intergenic | 60.0% | |
| TGACGCTGTGACGGCCATCT+AGG | + | chr4_1:66214595-66214614 | None:intergenic | 60.0% | |
| ! | TCAGCTTGTTTAGGGGGCGG+TGG | - | chr4_1:66215459-66215478 | Msa0565310:intron | 60.0% |
| ! | CAGCTTGTTTAGGGGGCGGT+GGG | - | chr4_1:66215460-66215479 | Msa0565310:intron | 60.0% |
| ! | AGCTTGTTTAGGGGGCGGTG+GGG | - | chr4_1:66215461-66215480 | Msa0565310:intron | 60.0% |
| CAAGCTGCCAGGATACCAGC+AGG | - | chr4_1:66215962-66215981 | Msa0565310:intron | 60.0% | |
| ! | TGCTTCGTTTGGTGGGAGGC+TGG | + | chr4_1:66216003-66216022 | None:intergenic | 60.0% |
| GTGGGGCTGCTTCGTTTGGT+GGG | + | chr4_1:66216010-66216029 | None:intergenic | 60.0% | |
| ! | TGGGTGTTTGCTGCTGCGTG+GGG | + | chr4_1:66216027-66216046 | None:intergenic | 60.0% |
| ! | CTGGGTGTTTGCTGCTGCGT+GGG | + | chr4_1:66216028-66216047 | None:intergenic | 60.0% |
| ! | CAGGGGTGCAGAGGCTGTTA+TGG | + | chr4_1:66216111-66216130 | None:intergenic | 60.0% |
| !! | GCTGTTGTGGGTGTTGGTGC+AGG | + | chr4_1:66216130-66216149 | None:intergenic | 60.0% |
| GCACCAACACCCACAACAGC+AGG | - | chr4_1:66216130-66216149 | Msa0565310:intron | 60.0% | |
| !! | GCTGGTGGCGCCTTCGTTTT+TGG | + | chr4_1:66216198-66216217 | None:intergenic | 60.0% |
| ACAGCATCTGTGCGGTCTGC+TGG | + | chr4_1:66216235-66216254 | None:intergenic | 60.0% | |
| GCAGACCGCACAGATGCTGT+AGG | - | chr4_1:66216235-66216254 | Msa0565310:intron | 60.0% | |
| GTCTTGGGGCTGTTACGGGT+GGG | + | chr4_1:66216312-66216331 | None:intergenic | 60.0% | |
| TGTCTTGGGGCTGTTACGGG+TGG | + | chr4_1:66216313-66216332 | None:intergenic | 60.0% | |
| ! | CGTTTGGTGGGAGGCTGGTC+TGG | + | chr4_1:66215998-66216017 | None:intergenic | 65.0% |
| ! | GGGCTGCTTCGTTTGGTGGG+AGG | + | chr4_1:66216007-66216026 | None:intergenic | 65.0% |
| CGTGGGGCTGCTTCGTTTGG+TGG | + | chr4_1:66216011-66216030 | None:intergenic | 65.0% | |
| CTGCGTGGGGCTGCTTCGTT+TGG | + | chr4_1:66216014-66216033 | None:intergenic | 65.0% | |
| ! | GCTGGGTGTTTGCTGCTGCG+TGG | + | chr4_1:66216029-66216048 | None:intergenic | 65.0% |
| ! | GTGTTGGTGCAGGGGTGCAG+AGG | + | chr4_1:66216120-66216139 | None:intergenic | 65.0% |
| !! | GTAGGAGGTGTTGGCGGGGG+TGG | - | chr4_1:66213473-66213492 | Msa0565310:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 66213018 | 66218556 | 66213018 | ID=Msa0565310;Name=Msa0565310 |
| chr4_1 | mRNA | 66213018 | 66218556 | 66213018 | ID=Msa0565310-mRNA-1;Parent=Msa0565310;Name=Msa0565310-mRNA-1;_AED=0.16;_eAED=0.16;_QI=39|0.75|1|1|0.75|0.4|5|0|233 |
| chr4_1 | exon | 66213018 | 66213056 | 66213018 | ID=Msa0565310-mRNA-1:exon:21447;Parent=Msa0565310-mRNA-1 |
| chr4_1 | exon | 66213147 | 66213235 | 66213147 | ID=Msa0565310-mRNA-1:exon:21446;Parent=Msa0565310-mRNA-1 |
| chr4_1 | exon | 66214055 | 66214255 | 66214055 | ID=Msa0565310-mRNA-1:exon:21445;Parent=Msa0565310-mRNA-1 |
| chr4_1 | exon | 66218011 | 66218170 | 66218011 | ID=Msa0565310-mRNA-1:exon:21444;Parent=Msa0565310-mRNA-1 |
| chr4_1 | exon | 66218308 | 66218556 | 66218308 | ID=Msa0565310-mRNA-1:exon:21443;Parent=Msa0565310-mRNA-1 |
| chr4_1 | five_prime_UTR | 66218518 | 66218556 | 66218518 | ID=Msa0565310-mRNA-1:five_prime_utr;Parent=Msa0565310-mRNA-1 |
| chr4_1 | CDS | 66218308 | 66218517 | 66218308 | ID=Msa0565310-mRNA-1:cds;Parent=Msa0565310-mRNA-1 |
| chr4_1 | CDS | 66218011 | 66218170 | 66218011 | ID=Msa0565310-mRNA-1:cds;Parent=Msa0565310-mRNA-1 |
| chr4_1 | CDS | 66214055 | 66214255 | 66214055 | ID=Msa0565310-mRNA-1:cds;Parent=Msa0565310-mRNA-1 |
| chr4_1 | CDS | 66213147 | 66213235 | 66213147 | ID=Msa0565310-mRNA-1:cds;Parent=Msa0565310-mRNA-1 |
| chr4_1 | CDS | 66213018 | 66213056 | 66213018 | ID=Msa0565310-mRNA-1:cds;Parent=Msa0565310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
