AlfalfaGEDB | Msa0565680

M. sativa cultivar zhongmu-4 / Msa0565680

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF13855.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0565680	XP_024627798.1	85.896	1021	40	5	1	931	40	1046	0.0	1763

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0565680	sp\|Q9FXF2\|RKF1_ARATH	52.834	988	350	12	7	899	22	988	0.0	1016

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0565680	A0A396GQS4	85.896	1021	40	5	1	931	40	1046	0.0	1763

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0565680	Msa0657390	0.914665	1.467814e-84	-8.615850e-47
Msa0565680	Msa1433830	0.915149	8.288160e-85	-8.615850e-47

Showing 1 to 2 of 2 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0565680	MtrunA17_Chr8g0379931	85.896	1021	40	5	1	931	40	1046	0.0	1763
Msa0565680	MtrunA17_Chr2g0315081	45.796	1011	415	20	5	918	8	982	0.0	791
Msa0565680	MtrunA17_Chr5g0438071	45.436	986	418	21	25	917	26	984	0.0	783
Msa0565680	MtrunA17_Chr2g0314911	44.900	1000	420	18	5	905	8	975	0.0	773
Msa0565680	MtrunA17_Chr2g0314991	46.193	972	394	18	34	905	549	1491	0.0	768
Msa0565680	MtrunA17_Chr2g0314991	50.844	533	193	9	432	905	2	524	1.38e-150	483
Msa0565680	MtrunA17_Chr5g0443531	44.149	1017	431	21	5	909	10	1001	0.0	767
Msa0565680	MtrunA17_Chr2g0314901	43.505	993	443	16	7	905	14	982	0.0	763
Msa0565680	MtrunA17_Chr8g0359651	44.625	986	423	17	16	903	18	978	0.0	759
Msa0565680	MtrunA17_Chr8g0359641	43.781	1005	439	18	25	931	26	1002	0.0	758

Showing 1 to 10 of 581 entries

Previous1 2 3 4 5…59Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0565680	AT1G29750.2	52.834	988	350	12	7	899	22	988	1016
Msa0565680	AT1G29750.1	52.752	963	339	12	32	899	32	973	989
Msa0565680	AT1G29750.3	54.309	847	292	11	7	779	22	847	898
Msa0565680	AT3G14840.2	45.114	962	411	20	5	869	8	949	762
Msa0565680	AT1G29720.1	44.004	1034	444	23	2	930	1	1004	753
Msa0565680	AT1G29740.2	43.202	993	430	20	1	891	15	975	738
Msa0565680	AT1G29740.1	43.202	993	430	20	1	891	15	975	737
Msa0565680	AT1G07650.1	43.238	1013	453	22	2	910	4	998	734
Msa0565680	AT1G07650.2	42.983	1019	453	23	2	910	4	1004	727
Msa0565680	AT1G29730.1	43.282	975	404	17	3	886	18	934	726

Showing 1 to 10 of 579 entries

Previous1 2 3 4 5…58Next

Find 239 sgRNAs with CRISPR-Local

Find 504 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAATTAGAGCTGCCA+CGG	0.550846	4_1:-66552943	Msa0565680:CDS
AAAACTATACAGTGAATGTG+AGG	0.645951	4_1:+66550958	None:intergenic
AAAACTCACGGAATAAAGCA+CGG	0.619524	4_1:+66552585	None:intergenic
AAAATAGGAAAATTCTGACT+TGG	0.532209	4_1:+66556686	None:intergenic
AAAATTCACGGTTTCCCTGC+CGG	0.475147	4_1:+66552729	None:intergenic
AAACATAGGATTCTGTGTGT+TGG	0.577749	4_1:-66558889	Msa0565680:five_prime_UTR
AAACTCACGGAATAAAGCAC+GGG	0.590989	4_1:+66552586	None:intergenic
AAATAGAGCTCCAAGTTCAG+AGG	0.602038	4_1:+66557461	None:intergenic
AAATCTGTTCCAGGGAAGAT+TGG	0.388429	4_1:-66554275	Msa0565680:intron
AAATTCACGGTTTCCCTGCC+GGG	0.445866	4_1:+66552730	None:intergenic

Showing 1 to 10 of 239 entries

Previous1 2 3 4 5…24Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGGATATGAGCTGATAAAAT+TGG	+	chr4_1:66550902-66550921	None:intergenic	30.0%
TTTAGATTCTGCATAATCCA+AGG	+	chr4_1:66551085-66551104	None:intergenic	30.0%
CTATAGCACTAAAATGGAAA+AGG	+	chr4_1:66551133-66551152	None:intergenic	30.0%
GTACAACTATAGCACTAAAA+TGG	+	chr4_1:66551139-66551158	None:intergenic	30.0%
GCATTAACTGATAACATTTG+AGG	+	chr4_1:66551272-66551291	None:intergenic	30.0%
ATGCTCTTGAAGAAATAACA+AGG	-	chr4_1:66551288-66551307	Msa0565680:CDS	30.0%
TGAAGAAATAACAAGGACAA+TGG	-	chr4_1:66551295-66551314	Msa0565680:CDS	30.0%
GAAGAAATAACAAGGACAAT+GGG	-	chr4_1:66551296-66551315	Msa0565680:CDS	30.0%
TCAAACTATTGGAAGTTTGA+TGG	-	chr4_1:66551320-66551339	Msa0565680:CDS	30.0%
TTTGACACACTATTGTAAGT+AGG	-	chr4_1:66551565-66551584	Msa0565680:intron	30.0%

Showing 1 to 10 of 504 entries

Previous1 2 3 4 5…51Next

Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	66550848	66559053	66550848	ID=Msa0565680;Name=Msa0565680
chr4_1	mRNA	66550848	66559053	66550848	ID=Msa0565680-mRNA-1;Parent=Msa0565680;Name=Msa0565680-mRNA-1;_AED=0.19;_eAED=0.19;_QI=179\|0.76\|0.86\|1\|1\|1\|22\|347\|931
chr4_1	exon	66550848	66551566	66550848	ID=Msa0565680-mRNA-1:exon:21657;Parent=Msa0565680-mRNA-1
chr4_1	exon	66551816	66551903	66551816	ID=Msa0565680-mRNA-1:exon:21656;Parent=Msa0565680-mRNA-1
chr4_1	exon	66551977	66552205	66551977	ID=Msa0565680-mRNA-1:exon:21655;Parent=Msa0565680-mRNA-1
chr4_1	exon	66552594	66552804	66552594	ID=Msa0565680-mRNA-1:exon:21654;Parent=Msa0565680-mRNA-1
chr4_1	exon	66552887	66553005	66552887	ID=Msa0565680-mRNA-1:exon:21653;Parent=Msa0565680-mRNA-1
chr4_1	exon	66553295	66553444	66553295	ID=Msa0565680-mRNA-1:exon:21652;Parent=Msa0565680-mRNA-1
chr4_1	exon	66554086	66554284	66554086	ID=Msa0565680-mRNA-1:exon:21651;Parent=Msa0565680-mRNA-1
chr4_1	exon	66554458	66554759	66554458	ID=Msa0565680-mRNA-1:exon:21650;Parent=Msa0565680-mRNA-1
chr4_1	exon	66555015	66555058	66555015	ID=Msa0565680-mRNA-1:exon:21649;Parent=Msa0565680-mRNA-1
chr4_1	exon	66555485	66555547	66555485	ID=Msa0565680-mRNA-1:exon:21648;Parent=Msa0565680-mRNA-1
chr4_1	exon	66555819	66555926	66555819	ID=Msa0565680-mRNA-1:exon:21647;Parent=Msa0565680-mRNA-1
chr4_1	exon	66556269	66556337	66556269	ID=Msa0565680-mRNA-1:exon:21646;Parent=Msa0565680-mRNA-1
chr4_1	exon	66556502	66556573	66556502	ID=Msa0565680-mRNA-1:exon:21645;Parent=Msa0565680-mRNA-1
chr4_1	exon	66556659	66556730	66556659	ID=Msa0565680-mRNA-1:exon:21644;Parent=Msa0565680-mRNA-1
chr4_1	exon	66556973	66557044	66556973	ID=Msa0565680-mRNA-1:exon:21643;Parent=Msa0565680-mRNA-1
chr4_1	exon	66557128	66557199	66557128	ID=Msa0565680-mRNA-1:exon:21642;Parent=Msa0565680-mRNA-1
chr4_1	exon	66557447	66557518	66557447	ID=Msa0565680-mRNA-1:exon:21641;Parent=Msa0565680-mRNA-1
chr4_1	exon	66557816	66557887	66557816	ID=Msa0565680-mRNA-1:exon:21640;Parent=Msa0565680-mRNA-1
chr4_1	exon	66557966	66558034	66557966	ID=Msa0565680-mRNA-1:exon:21639;Parent=Msa0565680-mRNA-1
chr4_1	exon	66558191	66558262	66558191	ID=Msa0565680-mRNA-1:exon:21638;Parent=Msa0565680-mRNA-1
chr4_1	exon	66558442	66558616	66558442	ID=Msa0565680-mRNA-1:exon:21637;Parent=Msa0565680-mRNA-1
chr4_1	exon	66558781	66559053	66558781	ID=Msa0565680-mRNA-1:exon:21636;Parent=Msa0565680-mRNA-1
chr4_1	five_prime_UTR	66558875	66559053	66558875	ID=Msa0565680-mRNA-1:five_prime_utr;Parent=Msa0565680-mRNA-1
chr4_1	CDS	66558781	66558874	66558781	ID=Msa0565680-mRNA-1:cds;Parent=Msa0565680-mRNA-1
chr4_1	CDS	66558442	66558616	66558442	ID=Msa0565680-mRNA-1:cds;Parent=Msa0565680-mRNA-1
chr4_1	CDS	66558191	66558262	66558191	ID=Msa0565680-mRNA-1:cds;Parent=Msa0565680-mRNA-1
chr4_1	CDS	66557966	66558034	66557966	ID=Msa0565680-mRNA-1:cds;Parent=Msa0565680-mRNA-1
chr4_1	CDS	66557816	66557887	66557816	ID=Msa0565680-mRNA-1:cds;Parent=Msa0565680-mRNA-1
chr4_1	CDS	66557447	66557518	66557447	ID=Msa0565680-mRNA-1:cds;Parent=Msa0565680-mRNA-1
chr4_1	CDS	66557128	66557199	66557128	ID=Msa0565680-mRNA-1:cds;Parent=Msa0565680-mRNA-1
chr4_1	CDS	66556973	66557044	66556973	ID=Msa0565680-mRNA-1:cds;Parent=Msa0565680-mRNA-1
chr4_1	CDS	66556659	66556730	66556659	ID=Msa0565680-mRNA-1:cds;Parent=Msa0565680-mRNA-1
chr4_1	CDS	66556502	66556573	66556502	ID=Msa0565680-mRNA-1:cds;Parent=Msa0565680-mRNA-1
chr4_1	CDS	66556269	66556337	66556269	ID=Msa0565680-mRNA-1:cds;Parent=Msa0565680-mRNA-1
chr4_1	CDS	66555819	66555926	66555819	ID=Msa0565680-mRNA-1:cds;Parent=Msa0565680-mRNA-1
chr4_1	CDS	66555485	66555547	66555485	ID=Msa0565680-mRNA-1:cds;Parent=Msa0565680-mRNA-1
chr4_1	CDS	66555015	66555058	66555015	ID=Msa0565680-mRNA-1:cds;Parent=Msa0565680-mRNA-1
chr4_1	CDS	66554458	66554759	66554458	ID=Msa0565680-mRNA-1:cds;Parent=Msa0565680-mRNA-1
chr4_1	CDS	66554086	66554284	66554086	ID=Msa0565680-mRNA-1:cds;Parent=Msa0565680-mRNA-1
chr4_1	CDS	66553295	66553444	66553295	ID=Msa0565680-mRNA-1:cds;Parent=Msa0565680-mRNA-1
chr4_1	CDS	66552887	66553005	66552887	ID=Msa0565680-mRNA-1:cds;Parent=Msa0565680-mRNA-1
chr4_1	CDS	66552594	66552804	66552594	ID=Msa0565680-mRNA-1:cds;Parent=Msa0565680-mRNA-1
chr4_1	CDS	66551977	66552205	66551977	ID=Msa0565680-mRNA-1:cds;Parent=Msa0565680-mRNA-1
chr4_1	CDS	66551816	66551903	66551816	ID=Msa0565680-mRNA-1:cds;Parent=Msa0565680-mRNA-1
chr4_1	CDS	66551195	66551566	66551195	ID=Msa0565680-mRNA-1:cds;Parent=Msa0565680-mRNA-1
chr4_1	three_prime_UTR	66550848	66551194	66550848	ID=Msa0565680-mRNA-1:three_prime_utr;Parent=Msa0565680-mRNA-1

Gene Sequence

>Msa0565680

ATGCTATCTAAGATCTTCTTTGCTTTCTCAATCATTGCATTTATTTGTTTCAGTTCCTTGGATTATGCAGAATCTAAACTTCCTCAGCAAGAGATTAATGCTCTTGAAGAAATAACAAGGACAATGGGTTCAAACTATTGGAAGTTTGATGGTGATTCATGTGAAATTAAAATGCTTGGTTTAACACAAGAGCCACCTGAAGGATCTCAAAGCAGCATTGGCTGTGATTGCTCTTCTGAAAATGACATATTTTGTCACGTAGTAAGGATATCATTCAAGGGGTACAGCCTTCCTGGCACGCTTCCACCTCAACTGGTTAAACTTCCATATCTCAAAGAAGTTGATTTTGCGTTAAACTACCTAAATGGTACGATCCCGAAGGAATGGGCTTCAACTGAACTAACTTATATCTCGCTATTTGTCAATCGTTTATCAGGGGAGATTCCTAAGGAATTGGGAAATATTACCACTCTAAGATACCTGAACATTGAAGCAAACCAATTTTCTGGTCTTGTTCCCTCTGAACTTGGAGCTCTATTTAACCTGCAGACTTTGATTTTATCATCCAATCAATTGTCTGGGAGCTTACCAGTGACATTTGCTCAGTTACAGGGTTTGACAGATTTTAGGATAAGTGATAATAGTTTCAACGGAAAAATACCTAGCTTCATACAGAATTGGAAACAACTTCAAAGATTGAAGATTAGTGACATAAATGGTCCAAGTCAGAATTTTCCTATTTTAAGCAACATGACAGGAATGATAAGATTGATTTTGAGGAATTGCAATATCACTGGAGAGATTCCTAGCTATTTCTGGACAATGAAGCAATTGGAAATGTTGGATCTCAGTTTCAATAACTTGTTTGGGGAAATACCGGCAATTGTACACGTGGGACATCTGAGATTTCTCTTCCTAACAGGCAACAAGCTAAGTGGTAATGTAGCCGACTCAATCTTGATGTCTGGAAGCAATGTGTACGTTTCTTGCCTCAACCATTTCACCTTCAACATTGCAAATGATCTTTCTTACAACAACTTTACATATCAAGGACCTGGAAAATCTGCTTGTGGAGACTACCTACAGGGGATGCTTCCATGTTCAAATAATTTCAACTGTCCTAGATATTCAAGTTGTTTGCATGTTAATTGTGGTGGAAAGGATATACAGGTGAAGGAAAATGGTGAAAATATCCTCTATATTGGAGATGGAGATGTGGTTGGCGGTGCTGCTAAATATTATAATGATTTTGAAAATCACTGGGGGTTTAGTAGTACTGGAGACTTCATGGATGATGGTGATTATCAAAATACACGTTACTCCAGATCTCTGTCATCTTCAAATATGCCGGAATTATATACTACGGCTCGTGCCTCTCCCATTTCACTTACTTATTTTCACTATTGCTTGGAAAATGGTAAATATACGGGAAGATTGGTTCAGAGGGATTTTAATATTGAAGATGAATCACACCTTGCTCAAAAACCGCGTATATTATCAATATATAATGTGACTGTTACAGATGGTATTCTGGAGATTCGATTATACTGGGCTGGCAAGGGGACTACAAGGATTCCTGTTAGTGGAGTTTATGGTCCCCTTATATCGGCTTTCTCTATTGTTTCTGATTCTAAACATTGTTCAGAACAAAAAAATGGAAGGCGTAAAATTGTTATTGGAGTAGGATTTGGCCTTACAGCTCTGTGCTTAATCCTTATTGTGGTAGGCATGTTGTGGTGGAAAGGCTACGCCAAAGGAATAATTAGAAGAGAAAAAGTTATTAAAGGGCAAGATTTTCAGATGAGAACATTTACTTTAAAACAAATTAGAGCTGCCACGGATGGATTCAGTCCTGCGAATAAGGTTGGGGAAGGTGGTTTTGGTTCTGTCTACAAGGGTCAACTATCTGATGGTACATGGGTAGCAGTCAAACAACTCTCCTCGAAGTCCCGGCAGGGAAACCGTGAATTTTTAAACGAGATAGGCATGATATCTTGTTTACAACATCCTAATCTTGTGAAACTTCATGGATGCTGCATTGAAGGGGATCAATTAATATTGGTGTATGAGTACATGGAAAATAATAGCCTGGCCCGTGCTTTATTCCAAGATCAGCTTAAACTTGACTGGCCATCAAGGCTTAGGATCTGCATTGGCATAGCAAAAGGTCTTGCATTTCTTCACGAAGAATCGAGACTCAAGGTTGTTCATCGAGATATCAAAGCTAATAACGTGTTACTGGATGGGAATTTAAACCCTAAAATATCTGATTTTGGGTTGGCGAGGCTTGATGAAGAGGAGAAGACCCATATCACCACGCGAGTGGCAGGAACAATAGGATATATGGCTCCGGAATATGCTTTATGGGGTTACTTGAGTTACAAGGTTGATGTTTATAGTTTTGGAGTCGTGGTCTTGGAAACTGCATTATATCTGGATCGGACTGAAAACTTTATGCAACTGGTTGATGAGAGATTAGGGTCAGAGGTAAACCCAACTGAAACAAAAAATGTAGTGAAAGTAGCTCTCTTATGCACGAATCCATCACCATCACTTAGGCCTACTATGTCTGAGGTTGTAAACATGCTTGAAGGAAGAATGAGCATTCCAGATGTTATCCCAGAAGGTAATACTTTCAGTGAAGATTTAAGGTTTAAATCCATGAGGGACATCCATCAAAACAAGGAAGGTCATAGTGTAAGCACAAGCCGAACAGACGGCTCAACAGGAGTCCTTACACATAGCACGCCCTCAACATTTGGCAATGACATTCATGAGATATCCTCTGAACCATAA

Protein sequence

>Msa0565680

MLSKIFFAFSIIAFICFSSLDYAESKLPQQEINALEEITRTMGSNYWKFDGDSCEIKMLGLTQEPPEGSQSSIGCDCSSENDIFCHVVRISFKGYSLPGTLPPQLVKLPYLKEVDFALNYLNGTIPKEWASTELTYISLFVNRLSGEIPKELGNITTLRYLNIEANQFSGLVPSELGALFNLQTLILSSNQLSGSLPVTFAQLQGLTDFRISDNSFNGKIPSFIQNWKQLQRLKISDINGPSQNFPILSNMTGMIRLILRNCNITGEIPSYFWTMKQLEMLDLSFNNLFGEIPAIVHVGHLRFLFLTGNKLSGNVADSILMSGSNVYVSCLNHFTFNIANDLSYNNFTYQGPGKSACGDYLQGMLPCSNNFNCPRYSSCLHVNCGGKDIQVKENGENILYIGDGDVVGGAAKYYNDFENHWGFSSTGDFMDDGDYQNTRYSRSLSSSNMPELYTTARASPISLTYFHYCLENGKYTGRLVQRDFNIEDESHLAQKPRILSIYNVTVTDGILEIRLYWAGKGTTRIPVSGVYGPLISAFSIVSDSKHCSEQKNGRRKIVIGVGFGLTALCLILIVVGMLWWKGYAKGIIRREKVIKGQDFQMRTFTLKQIRAATDGFSPANKVGEGGFGSVYKGQLSDGTWVAVKQLSSKSRQGNREFLNEIGMISCLQHPNLVKLHGCCIEGDQLILVYEYMENNSLARALFQDQLKLDWPSRLRICIGIAKGLAFLHEESRLKVVHRDIKANNVLLDGNLNPKISDFGLARLDEEEKTHITTRVAGTIGYMAPEYALWGYLSYKVDVYSFGVVVLETALYLDRTENFMQLVDERLGSEVNPTETKNVVKVALLCTNPSPSLRPTMSEVVNMLEGRMSIPDVIPEGNTFSEDLRFKSMRDIHQNKEGHSVSTSRTDGSTGVLTHSTPSTFGNDIHEISSEP*