Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568220 | ACJ85741.1 | 78.652 | 267 | 5 | 1 | 62 | 328 | 42 | 256 | 2.19e-141 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568220 | sp|Q940M2|AGT21_ARATH | 84.337 | 166 | 26 | 0 | 163 | 328 | 311 | 476 | 3.67e-99 | 303 |
| Msa0568220 | sp|Q940M2|AGT21_ARATH | 74.847 | 163 | 35 | 2 | 1 | 163 | 1 | 157 | 8.84e-76 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568220 | B7FLV8 | 78.652 | 267 | 5 | 1 | 62 | 328 | 42 | 256 | 1.04e-141 | 410 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0568220 | Msa0570350 | 0.860575 | 1.876743e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568220 | MtrunA17_Chr8g0382871 | 98.214 | 168 | 3 | 0 | 161 | 328 | 314 | 481 | 1.10e-114 | 340 |
| Msa0568220 | MtrunA17_Chr8g0382871 | 95.732 | 164 | 4 | 2 | 1 | 163 | 1 | 162 | 1.22e-106 | 320 |
| Msa0568220 | MtrunA17_Chr7g0244421 | 67.665 | 167 | 54 | 0 | 162 | 328 | 315 | 481 | 5.91e-77 | 243 |
| Msa0568220 | MtrunA17_Chr7g0244421 | 55.063 | 158 | 68 | 1 | 4 | 161 | 6 | 160 | 4.64e-56 | 189 |
| Msa0568220 | MtrunA17_Chr3g0106581 | 60.833 | 120 | 47 | 0 | 45 | 164 | 36 | 155 | 1.47e-49 | 168 |
| Msa0568220 | MtrunA17_Chr3g0106571 | 61.176 | 85 | 33 | 0 | 244 | 328 | 2 | 86 | 2.10e-37 | 129 |
| Msa0568220 | MtrunA17_Chr8g0376561 | 33.721 | 172 | 102 | 6 | 163 | 328 | 278 | 443 | 3.14e-16 | 79.3 |
| Msa0568220 | MtrunA17_Chr7g0233361 | 29.878 | 164 | 104 | 3 | 162 | 325 | 311 | 463 | 6.88e-15 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568220 | AT4G39660.2 | 84.337 | 166 | 26 | 0 | 163 | 328 | 236 | 401 | 2.74e-101 | 303 |
| Msa0568220 | AT4G39660.2 | 93.671 | 79 | 5 | 0 | 85 | 163 | 4 | 82 | 6.72e-44 | 155 |
| Msa0568220 | AT4G39660.1 | 84.337 | 166 | 26 | 0 | 163 | 328 | 311 | 476 | 3.73e-100 | 303 |
| Msa0568220 | AT4G39660.1 | 74.847 | 163 | 35 | 2 | 1 | 163 | 1 | 157 | 8.99e-77 | 243 |
| Msa0568220 | AT2G38400.1 | 62.963 | 189 | 64 | 2 | 145 | 328 | 290 | 477 | 5.41e-76 | 241 |
| Msa0568220 | AT2G38400.1 | 53.416 | 161 | 74 | 1 | 4 | 164 | 1 | 160 | 7.16e-53 | 181 |
| Msa0568220 | AT3G08860.1 | 65.269 | 167 | 58 | 0 | 162 | 328 | 315 | 481 | 3.81e-73 | 234 |
| Msa0568220 | AT3G08860.1 | 51.807 | 166 | 72 | 2 | 1 | 164 | 4 | 163 | 1.82e-54 | 185 |
| Msa0568220 | AT2G38400.2 | 59.893 | 187 | 69 | 2 | 145 | 326 | 290 | 475 | 5.87e-69 | 223 |
| Msa0568220 | AT2G38400.2 | 53.416 | 161 | 74 | 1 | 4 | 164 | 1 | 160 | 1.08e-52 | 181 |
| Msa0568220 | AT3G08860.2 | 66.013 | 153 | 52 | 0 | 162 | 314 | 315 | 467 | 2.39e-65 | 213 |
| Msa0568220 | AT3G08860.2 | 51.807 | 166 | 72 | 2 | 1 | 164 | 4 | 163 | 1.44e-54 | 185 |
| Msa0568220 | AT1G80600.1 | 30.539 | 167 | 105 | 3 | 162 | 328 | 301 | 456 | 2.02e-16 | 80.1 |
| Msa0568220 | AT5G46180.1 | 28.365 | 208 | 133 | 7 | 131 | 328 | 249 | 450 | 2.11e-13 | 71.2 |
| Msa0568220 | AT3G22200.2 | 26.347 | 167 | 109 | 5 | 163 | 318 | 327 | 490 | 5.69e-11 | 63.9 |
| Msa0568220 | AT3G22200.1 | 26.347 | 167 | 109 | 5 | 163 | 318 | 318 | 481 | 7.25e-11 | 63.5 |
Find 110 sgRNAs with CRISPR-Local
Find 346 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATCACACTTGCAATTTC+TGG | 0.096360 | 4_1:+69824868 | None:intergenic |
| TGGACTAGTGTATATAATTC+TGG | 0.228638 | 4_1:-69823778 | Msa0568220:three_prime_UTR |
| ATGTATTGAATTGAATCTTC+TGG | 0.253389 | 4_1:+69824845 | None:intergenic |
| AAGATGGCATTCAAAATATC+AGG | 0.254872 | 4_1:+69825475 | None:intergenic |
| TTTGCCATTGTAACTATATC+AGG | 0.279616 | 4_1:+69825237 | None:intergenic |
| ACTTGCAGTGCTCAAGGTTC+TGG | 0.300527 | 4_1:-69824791 | Msa0568220:CDS |
| TGCTGATTTCGCCGAGGCTT+TGG | 0.311420 | 4_1:-69825398 | Msa0568220:CDS |
| TAACTCACTTTAAGATTTCC+AGG | 0.326980 | 4_1:+69825364 | None:intergenic |
| ATTGGCAATGGTTTGCCATT+AGG | 0.331757 | 4_1:-69824907 | Msa0568220:CDS |
| AAGATTCAATTCAATACATT+TGG | 0.343865 | 4_1:-69824841 | Msa0568220:CDS |
| CACCAGCCTCATCCGTATAA+TGG | 0.348055 | 4_1:-69825775 | Msa0568220:CDS |
| TTGAGTGGCGGTGGCGGTGG+AGG | 0.377277 | 4_1:+69825834 | None:intergenic |
| GGGAACCCCGTATGTTCTGC+CGG | 0.378650 | 4_1:-69824817 | Msa0568220:CDS |
| ATAAAGAAATTCCTTGATAA+TGG | 0.378967 | 4_1:-69823964 | Msa0568220:three_prime_UTR |
| AATCTTCATTCAATCAACTA+TGG | 0.384866 | 4_1:-69825947 | Msa0568220:exon |
| GTATATAATTCTGGGTTTCA+TGG | 0.385830 | 4_1:-69823769 | Msa0568220:three_prime_UTR |
| GGTTTGAGTGGCGGTGGCGG+TGG | 0.387927 | 4_1:+69825831 | None:intergenic |
| TCGGCGGATGGTCCATTATA+CGG | 0.389198 | 4_1:+69825763 | None:intergenic |
| ATAGTTGATTGAATGAAGAT+TGG | 0.389631 | 4_1:+69825949 | None:intergenic |
| TGTATTGAATTGAATCTTCT+GGG | 0.397988 | 4_1:+69824846 | None:intergenic |
| GGCGGTGGCGGTGGAGGAAG+AGG | 0.405626 | 4_1:+69825840 | None:intergenic |
| CAGGCTCATTGCGCTGATGT+TGG | 0.409243 | 4_1:-69824754 | Msa0568220:CDS |
| GCTTTGGCCGCCAAGATGCC+TGG | 0.409635 | 4_1:-69825382 | Msa0568220:CDS |
| GTTGTTCTGTAATAGGGTAT+TGG | 0.414384 | 4_1:-69824925 | Msa0568220:intron |
| GTAGAACTTGGCATTCTAGC+TGG | 0.420173 | 4_1:-69824228 | Msa0568220:intron |
| GGGATTGTTACTGTTTCTGC+TGG | 0.423180 | 4_1:-69825508 | Msa0568220:CDS |
| TTAATGTTAAATTGAAATGT+AGG | 0.426047 | 4_1:-69823719 | None:intergenic |
| ACAGCAGTTTCAGCCTTTGC+AGG | 0.430454 | 4_1:+69824364 | None:intergenic |
| TTTAAGATTTCCAGGCATCT+TGG | 0.432518 | 4_1:+69825372 | None:intergenic |
| GGACTAGTGTATATAATTCT+GGG | 0.437024 | 4_1:-69823777 | Msa0568220:three_prime_UTR |
| AGGAATTTCTTTATGCCAGC+AGG | 0.437757 | 4_1:+69823973 | None:intergenic |
| TAAATCGGAACGGTTAGGTT+TGG | 0.452559 | 4_1:+69825894 | None:intergenic |
| GAGGGGAAGAGGACTGATGC+TGG | 0.452610 | 4_1:-69824422 | Msa0568220:CDS |
| CTGGGTTTCATGGCATCAAA+AGG | 0.453650 | 4_1:-69823759 | Msa0568220:three_prime_UTR |
| ATTGGTGATGTGAGGGGAAG+AGG | 0.455086 | 4_1:-69824433 | Msa0568220:CDS |
| ATTCAATTCAATACATTTGG+TGG | 0.466618 | 4_1:-69824838 | Msa0568220:CDS |
| GCAAGTAAATCGGAACGGTT+AGG | 0.469454 | 4_1:+69825889 | None:intergenic |
| AGGTCTGCATGCAAGTAAAT+CGG | 0.473835 | 4_1:+69825879 | None:intergenic |
| GCAATTTGCCGCCATTATCA+AGG | 0.476634 | 4_1:+69823953 | None:intergenic |
| GGAACCCCGTATGTTCTGCC+GGG | 0.483488 | 4_1:-69824816 | Msa0568220:CDS |
| AGGGGAAGAGGACTGATGCT+GGG | 0.486503 | 4_1:-69824421 | Msa0568220:CDS |
| CATCTTGGCGGCCAAAGCCT+CGG | 0.487359 | 4_1:+69825387 | None:intergenic |
| CTGTAATAGGGTATTGGCAA+TGG | 0.494645 | 4_1:-69824919 | Msa0568220:intron |
| TATTCACCCCATTGCGATGA+GGG | 0.501559 | 4_1:-69823873 | Msa0568220:three_prime_UTR |
| TTCAATTCAATACATTTGGT+GGG | 0.503313 | 4_1:-69824837 | Msa0568220:CDS |
| CCGCTTGGCGAATACTTCAT+CGG | 0.508798 | 4_1:+69825744 | None:intergenic |
| CTCAGTCATTGGTGATGTGA+GGG | 0.509676 | 4_1:-69824440 | Msa0568220:intron |
| CAATATCTTTATGATGAAGC+TGG | 0.511618 | 4_1:-69825556 | Msa0568220:CDS |
| TAGAACTTGGCATTCTAGCT+GGG | 0.511798 | 4_1:-69824227 | Msa0568220:CDS |
| GTTTGTGTAGTTGAATATTG+TGG | 0.514435 | 4_1:-69825590 | Msa0568220:intron |
| GCCAAGCGGAAACAGTTCCT+TGG | 0.525591 | 4_1:-69825730 | Msa0568220:CDS |
| AAGTTTACTCTGCTCAAAGA+TGG | 0.529014 | 4_1:+69825459 | None:intergenic |
| ACCAAGGAACTGTTTCCGCT+TGG | 0.529471 | 4_1:+69825729 | None:intergenic |
| GTCCATTATACGGATGAGGC+TGG | 0.536767 | 4_1:+69825773 | None:intergenic |
| CTTGAGCACTGCAAGTCCCC+CGG | 0.539059 | 4_1:+69824798 | None:intergenic |
| AGCGATGGTTTGAGTGGCGG+TGG | 0.543427 | 4_1:+69825825 | None:intergenic |
| TGATAGAAATGGAACAAGGA+AGG | 0.544076 | 4_1:+69825706 | None:intergenic |
| AAGATTTCCAGGCATCTTGG+CGG | 0.548588 | 4_1:+69825375 | None:intergenic |
| GTTGTAACTACAGCTCCTAA+TGG | 0.549950 | 4_1:+69824892 | None:intergenic |
| GGGTAGAGCTTGTCACCGAC+CGG | 0.553408 | 4_1:-69824399 | Msa0568220:CDS |
| GTGATCTCAAACGCTCAAGC+AGG | 0.554165 | 4_1:+69824725 | None:intergenic |
| GCTGGGAAAGGAGGACTGCA+TGG | 0.556047 | 4_1:-69824210 | Msa0568220:CDS |
| TGGCGGTGGAGGAAGAGGAT+CGG | 0.556405 | 4_1:+69825845 | None:intergenic |
| TCTGGATAACGAGAAGCGGC+AGG | 0.556953 | 4_1:-69824773 | Msa0568220:CDS |
| GATGGTTTGAGTGGCGGTGG+CGG | 0.558101 | 4_1:+69825828 | None:intergenic |
| TCTTTACTGAAACACATTGG+TGG | 0.561144 | 4_1:+69824168 | None:intergenic |
| CATTATTTATGAGTTGAATG+TGG | 0.561326 | 4_1:-69823798 | Msa0568220:three_prime_UTR |
| GTGTAGTTGAATATTGTGGA+GGG | 0.563413 | 4_1:-69825586 | Msa0568220:intron |
| CAATCCCAGCAAAAGCATCA+AGG | 0.564493 | 4_1:+69825524 | None:intergenic |
| GGCATTCTAGCTGGGAAAGG+AGG | 0.570151 | 4_1:-69824219 | Msa0568220:CDS |
| TCCAGAAATTGCAAGTGTGA+TGG | 0.570685 | 4_1:-69824869 | Msa0568220:CDS |
| GATGGTCCATTATACGGATG+AGG | 0.572300 | 4_1:+69825769 | None:intergenic |
| GAACCCCGTATGTTCTGCCG+GGG | 0.574287 | 4_1:-69824815 | Msa0568220:CDS |
| TGATCGAACGGCGGAATCTG+CGG | 0.579441 | 4_1:+69825796 | None:intergenic |
| GGGGAAGAGGACTGATGCTG+GGG | 0.584229 | 4_1:-69824420 | Msa0568220:CDS |
| GAGGATCGGAGAGAAGAGAA+AGG | 0.584582 | 4_1:+69825859 | None:intergenic |
| TATTCCTGATATAGTTACAA+TGG | 0.585000 | 4_1:-69825241 | Msa0568220:CDS |
| GCGAATACTTCATCGGCGGA+TGG | 0.586284 | 4_1:+69825751 | None:intergenic |
| TCTCAGTCATTGGTGATGTG+AGG | 0.591066 | 4_1:-69824441 | Msa0568220:intron |
| CTTGGCATTCTAGCTGGGAA+AGG | 0.591195 | 4_1:-69824222 | Msa0568220:CDS |
| AATCTGCGGCGGAGTAGCGA+TGG | 0.592348 | 4_1:+69825810 | None:intergenic |
| TGTGTAGTTGAATATTGTGG+AGG | 0.595941 | 4_1:-69825587 | Msa0568220:intron |
| CGGCGAAATCAGCAATGGCA+TGG | 0.597426 | 4_1:+69825407 | None:intergenic |
| AAGAAATTCCTTGATAATGG+CGG | 0.603153 | 4_1:-69823961 | Msa0568220:three_prime_UTR |
| TGATATAGTTACAATGGCAA+AGG | 0.606729 | 4_1:-69825235 | Msa0568220:intron |
| AATGGCGGCAAATTGCTACA+TGG | 0.610144 | 4_1:-69823946 | Msa0568220:three_prime_UTR |
| GGCATGGTGTAGATAAATAG+TGG | 0.611889 | 4_1:+69825423 | None:intergenic |
| TGTAGTTGAATATTGTGGAG+GGG | 0.612466 | 4_1:-69825585 | Msa0568220:intron |
| CGGAGTAGCGATGGTTTGAG+TGG | 0.613849 | 4_1:+69825819 | None:intergenic |
| TCAGTCATTGGTGATGTGAG+GGG | 0.613915 | 4_1:-69824439 | Msa0568220:intron |
| GGATGAGGCTGGTGATCGAA+CGG | 0.624953 | 4_1:+69825784 | None:intergenic |
| GAAATGATTATGCATCCTGC+TGG | 0.627216 | 4_1:-69823988 | Msa0568220:three_prime_UTR |
| AGATGGCATTCAAAATATCA+GGG | 0.633200 | 4_1:+69825476 | None:intergenic |
| TCATCTTTACTGAAACACAT+TGG | 0.635753 | 4_1:+69824165 | None:intergenic |
| ATATTCACCCCATTGCGATG+AGG | 0.640700 | 4_1:-69823874 | Msa0568220:three_prime_UTR |
| AGCCTCGGCGAAATCAGCAA+TGG | 0.642104 | 4_1:+69825402 | None:intergenic |
| AGGTTCTGGATAACGAGAAG+CGG | 0.647863 | 4_1:-69824777 | Msa0568220:CDS |
| AGTAGCGATGGTTTGAGTGG+CGG | 0.653532 | 4_1:+69825822 | None:intergenic |
| AACCCCGTATGTTCTGCCGG+GGG | 0.654362 | 4_1:-69824814 | Msa0568220:CDS |
| TGCCATTGCTGATTTCGCCG+AGG | 0.659306 | 4_1:-69825404 | Msa0568220:CDS |
| CTTTGTCATAGAATAGTCCA+AGG | 0.661429 | 4_1:+69824015 | None:intergenic |
| TGCATGCAAGTAAATCGGAA+CGG | 0.667279 | 4_1:+69825884 | None:intergenic |
| CCGATGAAGTATTCGCCAAG+CGG | 0.669733 | 4_1:-69825744 | Msa0568220:CDS |
| TCGAACGGCGGAATCTGCGG+CGG | 0.669945 | 4_1:+69825799 | None:intergenic |
| GGGAAGAGGACTGATGCTGG+GGG | 0.689196 | 4_1:-69824419 | Msa0568220:CDS |
| TGTTTCAGTAAAGATGACGC+AGG | 0.689295 | 4_1:-69824159 | Msa0568220:intron |
| CTTGGCGAATACTTCATCGG+CGG | 0.694435 | 4_1:+69825747 | None:intergenic |
| TGAGGCTGGTGATCGAACGG+CGG | 0.706578 | 4_1:+69825787 | None:intergenic |
| AATGGAACAAGGAAGGACCA+AGG | 0.718500 | 4_1:+69825713 | None:intergenic |
| ATGGTGTAGATAAATAGTGG+TGG | 0.755498 | 4_1:+69825426 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAGAATAATAATAAAAATTG+CGG | + | chr4_1:69825209-69825228 | None:intergenic | 15.0% |
| !! | AAATAGTTATACTTCTTATT+TGG | + | chr4_1:69825424-69825443 | None:intergenic | 15.0% |
| !! | GAGAATAATAATAAAAATTG+CGG | + | chr4_1:69825209-69825228 | None:intergenic | 15.0% |
| !! | AAATAGTTATACTTCTTATT+TGG | + | chr4_1:69825424-69825443 | None:intergenic | 15.0% |
| !! | AACATTAATATGAGATACAA+TGG | + | chr4_1:69824745-69824764 | None:intergenic | 20.0% |
| !! | TATTAATGTTGTTCTGTAAT+AGG | - | chr4_1:69824755-69824774 | Msa0568220:CDS | 20.0% |
| !! | ATTAATGTTGTTCTGTAATA+GGG | - | chr4_1:69824756-69824775 | Msa0568220:CDS | 20.0% |
| !! | AAGATTCAATTCAATACATT+TGG | - | chr4_1:69824846-69824865 | Msa0568220:CDS | 20.0% |
| !! | TTAATATAGCATCTTAGAAA+TGG | - | chr4_1:69825015-69825034 | Msa0568220:intron | 20.0% |
| !!! | TTTTGTAATACAGTTCTTTA+TGG | - | chr4_1:69825042-69825061 | Msa0568220:intron | 20.0% |
| !! | TATAACTATTTACCTTCATA+TGG | - | chr4_1:69825433-69825452 | Msa0568220:CDS | 20.0% |
| !! | ATAAAGAAATTCCTTGATAA+TGG | - | chr4_1:69825723-69825742 | Msa0568220:CDS | 20.0% |
| !!! | TTTTTTTCTTAGTAGATAGT+TGG | - | chr4_1:69825864-69825883 | Msa0568220:CDS | 20.0% |
| !! | AACATTAATATGAGATACAA+TGG | + | chr4_1:69824745-69824764 | None:intergenic | 20.0% |
| !! | TATTAATGTTGTTCTGTAAT+AGG | - | chr4_1:69824755-69824774 | Msa0568220:CDS | 20.0% |
| !! | ATTAATGTTGTTCTGTAATA+GGG | - | chr4_1:69824756-69824775 | Msa0568220:CDS | 20.0% |
| !! | AAGATTCAATTCAATACATT+TGG | - | chr4_1:69824846-69824865 | Msa0568220:CDS | 20.0% |
| !! | TTAATATAGCATCTTAGAAA+TGG | - | chr4_1:69825015-69825034 | Msa0568220:intron | 20.0% |
| !!! | TTTTGTAATACAGTTCTTTA+TGG | - | chr4_1:69825042-69825061 | Msa0568220:intron | 20.0% |
| !! | TATAACTATTTACCTTCATA+TGG | - | chr4_1:69825433-69825452 | Msa0568220:CDS | 20.0% |
| !! | ATAAAGAAATTCCTTGATAA+TGG | - | chr4_1:69825723-69825742 | Msa0568220:CDS | 20.0% |
| !!! | TTTTTTTCTTAGTAGATAGT+TGG | - | chr4_1:69825864-69825883 | Msa0568220:CDS | 20.0% |
| ! | ATAGTTGATTGAATGAAGAT+TGG | + | chr4_1:69823741-69823760 | None:intergenic | 25.0% |
| ! | AATCTTCATTCAATCAACTA+TGG | - | chr4_1:69823740-69823759 | Msa0568220:three_prime_UTR | 25.0% |
| !! | TTTTTGATAGAAATGGAACA+AGG | + | chr4_1:69823988-69824007 | None:intergenic | 25.0% |
| ! | TATTCCTGATATAGTTACAA+TGG | - | chr4_1:69824446-69824465 | Msa0568220:intron | 25.0% |
| ! | TGTATTGAATTGAATCTTCT+GGG | + | chr4_1:69824844-69824863 | None:intergenic | 25.0% |
| ! | ATGTATTGAATTGAATCTTC+TGG | + | chr4_1:69824845-69824864 | None:intergenic | 25.0% |
| ! | ATTCAATTCAATACATTTGG+TGG | - | chr4_1:69824849-69824868 | Msa0568220:CDS | 25.0% |
| ! | TTCAATTCAATACATTTGGT+GGG | - | chr4_1:69824850-69824869 | Msa0568220:CDS | 25.0% |
| !!! | ATCAATTTTTGTTATGATGC+AGG | + | chr4_1:69825176-69825195 | None:intergenic | 25.0% |
| ! | TTGTATAATTTCTCAGTCAT+TGG | - | chr4_1:69825236-69825255 | Msa0568220:CDS | 25.0% |
| ! | AAAGGCTTCAATATAAAATC+TGG | + | chr4_1:69825591-69825610 | None:intergenic | 25.0% |
| !! | CATTATTTATGAGTTGAATG+TGG | - | chr4_1:69825889-69825908 | Msa0568220:CDS | 25.0% |
| ! | ATAGTTGATTGAATGAAGAT+TGG | + | chr4_1:69823741-69823760 | None:intergenic | 25.0% |
| ! | AATCTTCATTCAATCAACTA+TGG | - | chr4_1:69823740-69823759 | Msa0568220:three_prime_UTR | 25.0% |
| !! | TTTTTGATAGAAATGGAACA+AGG | + | chr4_1:69823988-69824007 | None:intergenic | 25.0% |
| ! | TATTCCTGATATAGTTACAA+TGG | - | chr4_1:69824446-69824465 | Msa0568220:intron | 25.0% |
| ! | TGTATTGAATTGAATCTTCT+GGG | + | chr4_1:69824844-69824863 | None:intergenic | 25.0% |
| ! | ATGTATTGAATTGAATCTTC+TGG | + | chr4_1:69824845-69824864 | None:intergenic | 25.0% |
| ! | ATTCAATTCAATACATTTGG+TGG | - | chr4_1:69824849-69824868 | Msa0568220:CDS | 25.0% |
| ! | TTCAATTCAATACATTTGGT+GGG | - | chr4_1:69824850-69824869 | Msa0568220:CDS | 25.0% |
| !!! | ATCAATTTTTGTTATGATGC+AGG | + | chr4_1:69825176-69825195 | None:intergenic | 25.0% |
| ! | TTGTATAATTTCTCAGTCAT+TGG | - | chr4_1:69825236-69825255 | Msa0568220:CDS | 25.0% |
| ! | AAAGGCTTCAATATAAAATC+TGG | + | chr4_1:69825591-69825610 | None:intergenic | 25.0% |
| !! | CATTATTTATGAGTTGAATG+TGG | - | chr4_1:69825889-69825908 | Msa0568220:CDS | 25.0% |
| ! | AGAGAAATGAGTTTGATGAT+AGG | + | chr4_1:69824021-69824040 | None:intergenic | 30.0% |
| GTTTGTGTAGTTGAATATTG+TGG | - | chr4_1:69824097-69824116 | Msa0568220:intron | 30.0% | |
| CAATATCTTTATGATGAAGC+TGG | - | chr4_1:69824131-69824150 | Msa0568220:intron | 30.0% | |
| AGATGGCATTCAAAATATCA+GGG | + | chr4_1:69824214-69824233 | None:intergenic | 30.0% | |
| AAGATGGCATTCAAAATATC+AGG | + | chr4_1:69824215-69824234 | None:intergenic | 30.0% | |
| !! | TAACTCACTTTAAGATTTCC+AGG | + | chr4_1:69824326-69824345 | None:intergenic | 30.0% |
| TCTCTTGTGTTATAGTATGA+TGG | - | chr4_1:69824367-69824386 | Msa0568220:CDS | 30.0% | |
| TTTGCCATTGTAACTATATC+AGG | + | chr4_1:69824453-69824472 | None:intergenic | 30.0% | |
| TGATATAGTTACAATGGCAA+AGG | - | chr4_1:69824452-69824471 | Msa0568220:intron | 30.0% | |
| ! | TTATTTAGTTCCTGAAACCA+TGG | - | chr4_1:69824499-69824518 | Msa0568220:intron | 30.0% |
| TGCTTAATAAACCTCATTAG+AGG | + | chr4_1:69824557-69824576 | None:intergenic | 30.0% | |
| ACACATCGAGCTAAAATTTA+AGG | + | chr4_1:69824616-69824635 | None:intergenic | 30.0% | |
| !! | TTTCTAGCTATCTATGTACA+TGG | - | chr4_1:69825076-69825095 | Msa0568220:intron | 30.0% |
| ATCTATGTACATGGATTCTT+AGG | - | chr4_1:69825085-69825104 | Msa0568220:intron | 30.0% | |
| GATCATGATATGTTATAGTC+AGG | - | chr4_1:69825145-69825164 | Msa0568220:intron | 30.0% | |
| !! | GTCTTGTTTGAAAAACTTAG+AGG | - | chr4_1:69825344-69825363 | Msa0568220:intron | 30.0% |
| GGAACTTATATTAGAAAGAG+CGG | + | chr4_1:69825403-69825422 | None:intergenic | 30.0% | |
| AAGTTCTACAATCCATATGA+AGG | + | chr4_1:69825448-69825467 | None:intergenic | 30.0% | |
| ! | TTCATATGGATTGTAGAACT+TGG | - | chr4_1:69825447-69825466 | Msa0568220:CDS | 30.0% |
| TCATCTTTACTGAAACACAT+TGG | + | chr4_1:69825525-69825544 | None:intergenic | 30.0% | |
| ! | TAAAACTTTTGCTGGATCAA+AGG | + | chr4_1:69825609-69825628 | None:intergenic | 30.0% |
| ! | CATTGGAATAAAACTTTTGC+TGG | + | chr4_1:69825617-69825636 | None:intergenic | 30.0% |
| !! | AAGAAATTCCTTGATAATGG+CGG | - | chr4_1:69825726-69825745 | Msa0568220:CDS | 30.0% |
| !!! | GGGTTTTTTCTTCTTATAGT+TGG | - | chr4_1:69825834-69825853 | Msa0568220:CDS | 30.0% |
| !! | TGGACTAGTGTATATAATTC+TGG | - | chr4_1:69825909-69825928 | Msa0568220:CDS | 30.0% |
| ! | GGACTAGTGTATATAATTCT+GGG | - | chr4_1:69825910-69825929 | Msa0568220:CDS | 30.0% |
| GTATATAATTCTGGGTTTCA+TGG | - | chr4_1:69825918-69825937 | Msa0568220:CDS | 30.0% | |
| ! | AGAGAAATGAGTTTGATGAT+AGG | + | chr4_1:69824021-69824040 | None:intergenic | 30.0% |
| GTTTGTGTAGTTGAATATTG+TGG | - | chr4_1:69824097-69824116 | Msa0568220:intron | 30.0% | |
| CAATATCTTTATGATGAAGC+TGG | - | chr4_1:69824131-69824150 | Msa0568220:intron | 30.0% | |
| AGATGGCATTCAAAATATCA+GGG | + | chr4_1:69824214-69824233 | None:intergenic | 30.0% | |
| AAGATGGCATTCAAAATATC+AGG | + | chr4_1:69824215-69824234 | None:intergenic | 30.0% | |
| !! | TAACTCACTTTAAGATTTCC+AGG | + | chr4_1:69824326-69824345 | None:intergenic | 30.0% |
| TCTCTTGTGTTATAGTATGA+TGG | - | chr4_1:69824367-69824386 | Msa0568220:CDS | 30.0% | |
| TTTGCCATTGTAACTATATC+AGG | + | chr4_1:69824453-69824472 | None:intergenic | 30.0% | |
| TGATATAGTTACAATGGCAA+AGG | - | chr4_1:69824452-69824471 | Msa0568220:intron | 30.0% | |
| ! | TTATTTAGTTCCTGAAACCA+TGG | - | chr4_1:69824499-69824518 | Msa0568220:intron | 30.0% |
| TGCTTAATAAACCTCATTAG+AGG | + | chr4_1:69824557-69824576 | None:intergenic | 30.0% | |
| ACACATCGAGCTAAAATTTA+AGG | + | chr4_1:69824616-69824635 | None:intergenic | 30.0% | |
| !! | TTTCTAGCTATCTATGTACA+TGG | - | chr4_1:69825076-69825095 | Msa0568220:intron | 30.0% |
| ATCTATGTACATGGATTCTT+AGG | - | chr4_1:69825085-69825104 | Msa0568220:intron | 30.0% | |
| GATCATGATATGTTATAGTC+AGG | - | chr4_1:69825145-69825164 | Msa0568220:intron | 30.0% | |
| !! | GTCTTGTTTGAAAAACTTAG+AGG | - | chr4_1:69825344-69825363 | Msa0568220:intron | 30.0% |
| GGAACTTATATTAGAAAGAG+CGG | + | chr4_1:69825403-69825422 | None:intergenic | 30.0% | |
| AAGTTCTACAATCCATATGA+AGG | + | chr4_1:69825448-69825467 | None:intergenic | 30.0% | |
| ! | TTCATATGGATTGTAGAACT+TGG | - | chr4_1:69825447-69825466 | Msa0568220:CDS | 30.0% |
| TCATCTTTACTGAAACACAT+TGG | + | chr4_1:69825525-69825544 | None:intergenic | 30.0% | |
| ! | TAAAACTTTTGCTGGATCAA+AGG | + | chr4_1:69825609-69825628 | None:intergenic | 30.0% |
| ! | CATTGGAATAAAACTTTTGC+TGG | + | chr4_1:69825617-69825636 | None:intergenic | 30.0% |
| !! | AAGAAATTCCTTGATAATGG+CGG | - | chr4_1:69825726-69825745 | Msa0568220:CDS | 30.0% |
| !!! | GGGTTTTTTCTTCTTATAGT+TGG | - | chr4_1:69825834-69825853 | Msa0568220:CDS | 30.0% |
| !! | TGGACTAGTGTATATAATTC+TGG | - | chr4_1:69825909-69825928 | Msa0568220:CDS | 30.0% |
| ! | GGACTAGTGTATATAATTCT+GGG | - | chr4_1:69825910-69825929 | Msa0568220:CDS | 30.0% |
| GTATATAATTCTGGGTTTCA+TGG | - | chr4_1:69825918-69825937 | Msa0568220:CDS | 30.0% | |
| TGATAGAAATGGAACAAGGA+AGG | + | chr4_1:69823984-69824003 | None:intergenic | 35.0% | |
| !!! | TGACGGGTTTTTGATAGAAA+TGG | + | chr4_1:69823995-69824014 | None:intergenic | 35.0% |
| ! | AGTTTGATGATAGGAACTGA+CGG | + | chr4_1:69824012-69824031 | None:intergenic | 35.0% |
| TGTGTAGTTGAATATTGTGG+AGG | - | chr4_1:69824100-69824119 | Msa0568220:intron | 35.0% | |
| GTGTAGTTGAATATTGTGGA+GGG | - | chr4_1:69824101-69824120 | Msa0568220:intron | 35.0% | |
| TGTAGTTGAATATTGTGGAG+GGG | - | chr4_1:69824102-69824121 | Msa0568220:intron | 35.0% | |
| AAGTTTACTCTGCTCAAAGA+TGG | + | chr4_1:69824231-69824250 | None:intergenic | 35.0% | |
| ATGGTGTAGATAAATAGTGG+TGG | + | chr4_1:69824264-69824283 | None:intergenic | 35.0% | |
| ! | TTTAAGATTTCCAGGCATCT+TGG | + | chr4_1:69824318-69824337 | None:intergenic | 35.0% |
| GCACTTCAAATGCATAACTA+AGG | + | chr4_1:69824527-69824546 | None:intergenic | 35.0% | |
| GTTGTTCTGTAATAGGGTAT+TGG | - | chr4_1:69824762-69824781 | Msa0568220:CDS | 35.0% | |
| !! | TACATGGATTCTTAGGTTGA+GGG | - | chr4_1:69825092-69825111 | Msa0568220:intron | 35.0% |
| ACATATCATGATCAGTTACC+AGG | + | chr4_1:69825138-69825157 | None:intergenic | 35.0% | |
| TCTTTACTGAAACACATTGG+TGG | + | chr4_1:69825522-69825541 | None:intergenic | 35.0% | |
| AAATCTGCAAGCAAAGAGAA+TGG | + | chr4_1:69825641-69825660 | None:intergenic | 35.0% | |
| ! | TTTGCTTGCAGATTTTCTTG+TGG | - | chr4_1:69825646-69825665 | Msa0568220:intron | 35.0% |
| CTTTGTCATAGAATAGTCCA+AGG | + | chr4_1:69825675-69825694 | None:intergenic | 35.0% | |
| TGATAGAAATGGAACAAGGA+AGG | + | chr4_1:69823984-69824003 | None:intergenic | 35.0% | |
| !!! | TGACGGGTTTTTGATAGAAA+TGG | + | chr4_1:69823995-69824014 | None:intergenic | 35.0% |
| ! | AGTTTGATGATAGGAACTGA+CGG | + | chr4_1:69824012-69824031 | None:intergenic | 35.0% |
| TGTGTAGTTGAATATTGTGG+AGG | - | chr4_1:69824100-69824119 | Msa0568220:intron | 35.0% | |
| GTGTAGTTGAATATTGTGGA+GGG | - | chr4_1:69824101-69824120 | Msa0568220:intron | 35.0% | |
| TGTAGTTGAATATTGTGGAG+GGG | - | chr4_1:69824102-69824121 | Msa0568220:intron | 35.0% | |
| AAGTTTACTCTGCTCAAAGA+TGG | + | chr4_1:69824231-69824250 | None:intergenic | 35.0% | |
| ATGGTGTAGATAAATAGTGG+TGG | + | chr4_1:69824264-69824283 | None:intergenic | 35.0% | |
| ! | TTTAAGATTTCCAGGCATCT+TGG | + | chr4_1:69824318-69824337 | None:intergenic | 35.0% |
| GCACTTCAAATGCATAACTA+AGG | + | chr4_1:69824527-69824546 | None:intergenic | 35.0% | |
| GTTGTTCTGTAATAGGGTAT+TGG | - | chr4_1:69824762-69824781 | Msa0568220:CDS | 35.0% | |
| !! | TACATGGATTCTTAGGTTGA+GGG | - | chr4_1:69825092-69825111 | Msa0568220:intron | 35.0% |
| ACATATCATGATCAGTTACC+AGG | + | chr4_1:69825138-69825157 | None:intergenic | 35.0% | |
| TCTTTACTGAAACACATTGG+TGG | + | chr4_1:69825522-69825541 | None:intergenic | 35.0% | |
| AAATCTGCAAGCAAAGAGAA+TGG | + | chr4_1:69825641-69825660 | None:intergenic | 35.0% | |
| ! | TTTGCTTGCAGATTTTCTTG+TGG | - | chr4_1:69825646-69825665 | Msa0568220:intron | 35.0% |
| CTTTGTCATAGAATAGTCCA+AGG | + | chr4_1:69825675-69825694 | None:intergenic | 35.0% | |
| TAAATCGGAACGGTTAGGTT+TGG | + | chr4_1:69823796-69823815 | None:intergenic | 40.0% | |
| TGCATGCAAGTAAATCGGAA+CGG | + | chr4_1:69823806-69823825 | None:intergenic | 40.0% | |
| AGGTCTGCATGCAAGTAAAT+CGG | + | chr4_1:69823811-69823830 | None:intergenic | 40.0% | |
| ! | GTTTGATGATAGGAACTGAC+GGG | + | chr4_1:69824011-69824030 | None:intergenic | 40.0% |
| ! | GTTACCTTGATGCTTTTGCT+GGG | - | chr4_1:69824159-69824178 | Msa0568220:intron | 40.0% |
| GGCATGGTGTAGATAAATAG+TGG | + | chr4_1:69824267-69824286 | None:intergenic | 40.0% | |
| ATATGATTGCATGATGCCTC+TGG | - | chr4_1:69824402-69824421 | Msa0568220:CDS | 40.0% | |
| TATGATTGCATGATGCCTCT+GGG | - | chr4_1:69824403-69824422 | Msa0568220:CDS | 40.0% | |
| ! | AATGCATAACTAAGGTGCCA+TGG | + | chr4_1:69824519-69824538 | None:intergenic | 40.0% |
| !! | CTGTAATAGGGTATTGGCAA+TGG | - | chr4_1:69824768-69824787 | Msa0568220:CDS | 40.0% |
| ! | ATTGGCAATGGTTTGCCATT+AGG | - | chr4_1:69824780-69824799 | Msa0568220:CDS | 40.0% |
| GTTGTAACTACAGCTCCTAA+TGG | + | chr4_1:69824798-69824817 | None:intergenic | 40.0% | |
| TCCAGAAATTGCAAGTGTGA+TGG | - | chr4_1:69824818-69824837 | Msa0568220:CDS | 40.0% | |
| ! | GTACATGGATTCTTAGGTTG+AGG | - | chr4_1:69825091-69825110 | Msa0568220:intron | 40.0% |
| CAGGCTCAAATCAAGTAATG+AGG | + | chr4_1:69825119-69825138 | None:intergenic | 40.0% | |
| ! | CTCATTACTTGATTTGAGCC+TGG | - | chr4_1:69825117-69825136 | Msa0568220:intron | 40.0% |
| !!! | TTGCAGGTGTCTTGTTTTTC+CGG | + | chr4_1:69825310-69825329 | None:intergenic | 40.0% |
| GAAAAACAAGACACCTGCAA+AGG | - | chr4_1:69825310-69825329 | Msa0568220:intron | 40.0% | |
| ! | TAGAACTTGGCATTCTAGCT+GGG | - | chr4_1:69825460-69825479 | Msa0568220:CDS | 40.0% |
| ! | GACTGCATGGAAATGTTTTC+AGG | - | chr4_1:69825490-69825509 | Msa0568220:CDS | 40.0% |
| TGTTTCAGTAAAGATGACGC+AGG | - | chr4_1:69825528-69825547 | Msa0568220:CDS | 40.0% | |
| CAAGCAAAGAGAATGGTCAT+TGG | + | chr4_1:69825634-69825653 | None:intergenic | 40.0% | |
| ! | AGATTTTCTTGTGGATGCCT+TGG | - | chr4_1:69825655-69825674 | Msa0568220:intron | 40.0% |
| GAAATGATTATGCATCCTGC+TGG | - | chr4_1:69825699-69825718 | Msa0568220:CDS | 40.0% | |
| AGGAATTTCTTTATGCCAGC+AGG | + | chr4_1:69825717-69825736 | None:intergenic | 40.0% | |
| AAAAAACCCTCATCGCAATG+GGG | + | chr4_1:69825823-69825842 | None:intergenic | 40.0% | |
| GAAAAAACCCTCATCGCAAT+GGG | + | chr4_1:69825824-69825843 | None:intergenic | 40.0% | |
| AGAAAAAACCCTCATCGCAA+TGG | + | chr4_1:69825825-69825844 | None:intergenic | 40.0% | |
| TAAATCGGAACGGTTAGGTT+TGG | + | chr4_1:69823796-69823815 | None:intergenic | 40.0% | |
| TGCATGCAAGTAAATCGGAA+CGG | + | chr4_1:69823806-69823825 | None:intergenic | 40.0% | |
| AGGTCTGCATGCAAGTAAAT+CGG | + | chr4_1:69823811-69823830 | None:intergenic | 40.0% | |
| ! | GTTTGATGATAGGAACTGAC+GGG | + | chr4_1:69824011-69824030 | None:intergenic | 40.0% |
| ! | GTTACCTTGATGCTTTTGCT+GGG | - | chr4_1:69824159-69824178 | Msa0568220:intron | 40.0% |
| GGCATGGTGTAGATAAATAG+TGG | + | chr4_1:69824267-69824286 | None:intergenic | 40.0% | |
| ATATGATTGCATGATGCCTC+TGG | - | chr4_1:69824402-69824421 | Msa0568220:CDS | 40.0% | |
| TATGATTGCATGATGCCTCT+GGG | - | chr4_1:69824403-69824422 | Msa0568220:CDS | 40.0% | |
| ! | AATGCATAACTAAGGTGCCA+TGG | + | chr4_1:69824519-69824538 | None:intergenic | 40.0% |
| !! | CTGTAATAGGGTATTGGCAA+TGG | - | chr4_1:69824768-69824787 | Msa0568220:CDS | 40.0% |
| ! | ATTGGCAATGGTTTGCCATT+AGG | - | chr4_1:69824780-69824799 | Msa0568220:CDS | 40.0% |
| GTTGTAACTACAGCTCCTAA+TGG | + | chr4_1:69824798-69824817 | None:intergenic | 40.0% | |
| TCCAGAAATTGCAAGTGTGA+TGG | - | chr4_1:69824818-69824837 | Msa0568220:CDS | 40.0% | |
| ! | GTACATGGATTCTTAGGTTG+AGG | - | chr4_1:69825091-69825110 | Msa0568220:intron | 40.0% |
| CAGGCTCAAATCAAGTAATG+AGG | + | chr4_1:69825119-69825138 | None:intergenic | 40.0% | |
| ! | CTCATTACTTGATTTGAGCC+TGG | - | chr4_1:69825117-69825136 | Msa0568220:intron | 40.0% |
| !!! | TTGCAGGTGTCTTGTTTTTC+CGG | + | chr4_1:69825310-69825329 | None:intergenic | 40.0% |
| GAAAAACAAGACACCTGCAA+AGG | - | chr4_1:69825310-69825329 | Msa0568220:intron | 40.0% | |
| ! | TAGAACTTGGCATTCTAGCT+GGG | - | chr4_1:69825460-69825479 | Msa0568220:CDS | 40.0% |
| ! | GACTGCATGGAAATGTTTTC+AGG | - | chr4_1:69825490-69825509 | Msa0568220:CDS | 40.0% |
| TGTTTCAGTAAAGATGACGC+AGG | - | chr4_1:69825528-69825547 | Msa0568220:CDS | 40.0% | |
| CAAGCAAAGAGAATGGTCAT+TGG | + | chr4_1:69825634-69825653 | None:intergenic | 40.0% | |
| ! | AGATTTTCTTGTGGATGCCT+TGG | - | chr4_1:69825655-69825674 | Msa0568220:intron | 40.0% |
| GAAATGATTATGCATCCTGC+TGG | - | chr4_1:69825699-69825718 | Msa0568220:CDS | 40.0% | |
| AGGAATTTCTTTATGCCAGC+AGG | + | chr4_1:69825717-69825736 | None:intergenic | 40.0% | |
| AAAAAACCCTCATCGCAATG+GGG | + | chr4_1:69825823-69825842 | None:intergenic | 40.0% | |
| GAAAAAACCCTCATCGCAAT+GGG | + | chr4_1:69825824-69825843 | None:intergenic | 40.0% | |
| AGAAAAAACCCTCATCGCAA+TGG | + | chr4_1:69825825-69825844 | None:intergenic | 40.0% | |
| GCAAGTAAATCGGAACGGTT+AGG | + | chr4_1:69823801-69823820 | None:intergenic | 45.0% | |
| GATGGTCCATTATACGGATG+AGG | + | chr4_1:69823921-69823940 | None:intergenic | 45.0% | |
| AATGGAACAAGGAAGGACCA+AGG | + | chr4_1:69823977-69823996 | None:intergenic | 45.0% | |
| ! | CGTTACCTTGATGCTTTTGC+TGG | - | chr4_1:69824158-69824177 | Msa0568220:intron | 45.0% |
| !! | CAATCCCAGCAAAAGCATCA+AGG | + | chr4_1:69824166-69824185 | None:intergenic | 45.0% |
| !! | GGGATTGTTACTGTTTCTGC+TGG | - | chr4_1:69824179-69824198 | Msa0568220:CDS | 45.0% |
| AAGATTTCCAGGCATCTTGG+CGG | + | chr4_1:69824315-69824334 | None:intergenic | 45.0% | |
| ATGATTGCATGATGCCTCTG+GGG | - | chr4_1:69824404-69824423 | Msa0568220:CDS | 45.0% | |
| ! | AACTAAGGTGCCATGGTTTC+AGG | + | chr4_1:69824512-69824531 | None:intergenic | 45.0% |
| GCCATCACACTTGCAATTTC+TGG | + | chr4_1:69824822-69824841 | None:intergenic | 45.0% | |
| !! | AGGTTCTGGATAACGAGAAG+CGG | - | chr4_1:69824910-69824929 | Msa0568220:CDS | 45.0% |
| !! | TCTCAGTCATTGGTGATGTG+AGG | - | chr4_1:69825246-69825265 | Msa0568220:CDS | 45.0% |
| !! | CTCAGTCATTGGTGATGTGA+GGG | - | chr4_1:69825247-69825266 | Msa0568220:CDS | 45.0% |
| !! | TCAGTCATTGGTGATGTGAG+GGG | - | chr4_1:69825248-69825267 | Msa0568220:CDS | 45.0% |
| !!! | AGGTGTCTTGTTTTTCCGGT+CGG | + | chr4_1:69825306-69825325 | None:intergenic | 45.0% |
| GTAGAACTTGGCATTCTAGC+TGG | - | chr4_1:69825459-69825478 | Msa0568220:CDS | 45.0% | |
| TCAGTAAAGATGACGCAGGT+AGG | - | chr4_1:69825532-69825551 | Msa0568220:CDS | 45.0% | |
| GCAATTTGCCGCCATTATCA+AGG | + | chr4_1:69825737-69825756 | None:intergenic | 45.0% | |
| AATGGCGGCAAATTGCTACA+TGG | - | chr4_1:69825741-69825760 | Msa0568220:CDS | 45.0% | |
| ATATTCACCCCATTGCGATG+AGG | - | chr4_1:69825813-69825832 | Msa0568220:CDS | 45.0% | |
| TATTCACCCCATTGCGATGA+GGG | - | chr4_1:69825814-69825833 | Msa0568220:CDS | 45.0% | |
| CTGGGTTTCATGGCATCAAA+AGG | - | chr4_1:69825928-69825947 | Msa0568220:CDS | 45.0% | |
| GCAAGTAAATCGGAACGGTT+AGG | + | chr4_1:69823801-69823820 | None:intergenic | 45.0% | |
| GATGGTCCATTATACGGATG+AGG | + | chr4_1:69823921-69823940 | None:intergenic | 45.0% | |
| AATGGAACAAGGAAGGACCA+AGG | + | chr4_1:69823977-69823996 | None:intergenic | 45.0% | |
| ! | CGTTACCTTGATGCTTTTGC+TGG | - | chr4_1:69824158-69824177 | Msa0568220:intron | 45.0% |
| !! | CAATCCCAGCAAAAGCATCA+AGG | + | chr4_1:69824166-69824185 | None:intergenic | 45.0% |
| !! | GGGATTGTTACTGTTTCTGC+TGG | - | chr4_1:69824179-69824198 | Msa0568220:CDS | 45.0% |
| AAGATTTCCAGGCATCTTGG+CGG | + | chr4_1:69824315-69824334 | None:intergenic | 45.0% | |
| ATGATTGCATGATGCCTCTG+GGG | - | chr4_1:69824404-69824423 | Msa0568220:CDS | 45.0% | |
| ! | AACTAAGGTGCCATGGTTTC+AGG | + | chr4_1:69824512-69824531 | None:intergenic | 45.0% |
| GCCATCACACTTGCAATTTC+TGG | + | chr4_1:69824822-69824841 | None:intergenic | 45.0% | |
| !! | AGGTTCTGGATAACGAGAAG+CGG | - | chr4_1:69824910-69824929 | Msa0568220:CDS | 45.0% |
| !! | TCTCAGTCATTGGTGATGTG+AGG | - | chr4_1:69825246-69825265 | Msa0568220:CDS | 45.0% |
| !! | CTCAGTCATTGGTGATGTGA+GGG | - | chr4_1:69825247-69825266 | Msa0568220:CDS | 45.0% |
| !! | TCAGTCATTGGTGATGTGAG+GGG | - | chr4_1:69825248-69825267 | Msa0568220:CDS | 45.0% |
| !!! | AGGTGTCTTGTTTTTCCGGT+CGG | + | chr4_1:69825306-69825325 | None:intergenic | 45.0% |
| GTAGAACTTGGCATTCTAGC+TGG | - | chr4_1:69825459-69825478 | Msa0568220:CDS | 45.0% | |
| TCAGTAAAGATGACGCAGGT+AGG | - | chr4_1:69825532-69825551 | Msa0568220:CDS | 45.0% | |
| GCAATTTGCCGCCATTATCA+AGG | + | chr4_1:69825737-69825756 | None:intergenic | 45.0% | |
| AATGGCGGCAAATTGCTACA+TGG | - | chr4_1:69825741-69825760 | Msa0568220:CDS | 45.0% | |
| ATATTCACCCCATTGCGATG+AGG | - | chr4_1:69825813-69825832 | Msa0568220:CDS | 45.0% | |
| TATTCACCCCATTGCGATGA+GGG | - | chr4_1:69825814-69825833 | Msa0568220:CDS | 45.0% | |
| CTGGGTTTCATGGCATCAAA+AGG | - | chr4_1:69825928-69825947 | Msa0568220:CDS | 45.0% | |
| GAGGATCGGAGAGAAGAGAA+AGG | + | chr4_1:69823831-69823850 | None:intergenic | 50.0% | |
| AGTAGCGATGGTTTGAGTGG+CGG | + | chr4_1:69823868-69823887 | None:intergenic | 50.0% | |
| CACCAGCCTCATCCGTATAA+TGG | - | chr4_1:69823912-69823931 | Msa0568220:three_prime_UTR | 50.0% | |
| GTCCATTATACGGATGAGGC+TGG | + | chr4_1:69823917-69823936 | None:intergenic | 50.0% | |
| TCGGCGGATGGTCCATTATA+CGG | + | chr4_1:69823927-69823946 | None:intergenic | 50.0% | |
| CTTGGCGAATACTTCATCGG+CGG | + | chr4_1:69823943-69823962 | None:intergenic | 50.0% | |
| CCGCTTGGCGAATACTTCAT+CGG | + | chr4_1:69823946-69823965 | None:intergenic | 50.0% | |
| ! | CCGATGAAGTATTCGCCAAG+CGG | - | chr4_1:69823943-69823962 | Msa0568220:three_prime_UTR | 50.0% |
| ACCAAGGAACTGTTTCCGCT+TGG | + | chr4_1:69823961-69823980 | None:intergenic | 50.0% | |
| GTGCAGCATTGCCTCTAATG+AGG | - | chr4_1:69824543-69824562 | Msa0568220:intron | 50.0% | |
| ACTTGCAGTGCTCAAGGTTC+TGG | - | chr4_1:69824896-69824915 | Msa0568220:CDS | 50.0% | |
| GTGATCTCAAACGCTCAAGC+AGG | + | chr4_1:69824965-69824984 | None:intergenic | 50.0% | |
| !! | ATTGGTGATGTGAGGGGAAG+AGG | - | chr4_1:69825254-69825273 | Msa0568220:intron | 50.0% |
| ACAGCAGTTTCAGCCTTTGC+AGG | + | chr4_1:69825326-69825345 | None:intergenic | 50.0% | |
| ! | CTTGGCATTCTAGCTGGGAA+AGG | - | chr4_1:69825465-69825484 | Msa0568220:CDS | 50.0% |
| GAGGATCGGAGAGAAGAGAA+AGG | + | chr4_1:69823831-69823850 | None:intergenic | 50.0% | |
| AGTAGCGATGGTTTGAGTGG+CGG | + | chr4_1:69823868-69823887 | None:intergenic | 50.0% | |
| CACCAGCCTCATCCGTATAA+TGG | - | chr4_1:69823912-69823931 | Msa0568220:three_prime_UTR | 50.0% | |
| GTCCATTATACGGATGAGGC+TGG | + | chr4_1:69823917-69823936 | None:intergenic | 50.0% | |
| TCGGCGGATGGTCCATTATA+CGG | + | chr4_1:69823927-69823946 | None:intergenic | 50.0% | |
| CTTGGCGAATACTTCATCGG+CGG | + | chr4_1:69823943-69823962 | None:intergenic | 50.0% | |
| CCGCTTGGCGAATACTTCAT+CGG | + | chr4_1:69823946-69823965 | None:intergenic | 50.0% | |
| ! | CCGATGAAGTATTCGCCAAG+CGG | - | chr4_1:69823943-69823962 | Msa0568220:three_prime_UTR | 50.0% |
| ACCAAGGAACTGTTTCCGCT+TGG | + | chr4_1:69823961-69823980 | None:intergenic | 50.0% | |
| GTGCAGCATTGCCTCTAATG+AGG | - | chr4_1:69824543-69824562 | Msa0568220:intron | 50.0% | |
| ACTTGCAGTGCTCAAGGTTC+TGG | - | chr4_1:69824896-69824915 | Msa0568220:CDS | 50.0% | |
| GTGATCTCAAACGCTCAAGC+AGG | + | chr4_1:69824965-69824984 | None:intergenic | 50.0% | |
| !! | ATTGGTGATGTGAGGGGAAG+AGG | - | chr4_1:69825254-69825273 | Msa0568220:intron | 50.0% |
| ACAGCAGTTTCAGCCTTTGC+AGG | + | chr4_1:69825326-69825345 | None:intergenic | 50.0% | |
| ! | CTTGGCATTCTAGCTGGGAA+AGG | - | chr4_1:69825465-69825484 | Msa0568220:CDS | 50.0% |
| CGGAGTAGCGATGGTTTGAG+TGG | + | chr4_1:69823871-69823890 | None:intergenic | 55.0% | |
| TGATCGAACGGCGGAATCTG+CGG | + | chr4_1:69823894-69823913 | None:intergenic | 55.0% | |
| GGATGAGGCTGGTGATCGAA+CGG | + | chr4_1:69823906-69823925 | None:intergenic | 55.0% | |
| GCGAATACTTCATCGGCGGA+TGG | + | chr4_1:69823939-69823958 | None:intergenic | 55.0% | |
| GCCAAGCGGAAACAGTTCCT+TGG | - | chr4_1:69823957-69823976 | Msa0568220:three_prime_UTR | 55.0% | |
| CGGCGAAATCAGCAATGGCA+TGG | + | chr4_1:69824283-69824302 | None:intergenic | 55.0% | |
| !! | TGCCATTGCTGATTTCGCCG+AGG | - | chr4_1:69824283-69824302 | Msa0568220:intron | 55.0% |
| AGCCTCGGCGAAATCAGCAA+TGG | + | chr4_1:69824288-69824307 | None:intergenic | 55.0% | |
| !! | TGCTGATTTCGCCGAGGCTT+TGG | - | chr4_1:69824289-69824308 | Msa0568220:intron | 55.0% |
| ! | TCTGGGGTGTTCGAGACACA+GGG | - | chr4_1:69824420-69824439 | Msa0568220:CDS | 55.0% |
| AAGTCCCCCGGCAGAACATA+CGG | + | chr4_1:69824880-69824899 | None:intergenic | 55.0% | |
| TCTGGATAACGAGAAGCGGC+AGG | - | chr4_1:69824914-69824933 | Msa0568220:intron | 55.0% | |
| ! | CAGGCTCATTGCGCTGATGT+TGG | - | chr4_1:69824933-69824952 | Msa0568220:intron | 55.0% |
| AGGGGAAGAGGACTGATGCT+GGG | - | chr4_1:69825266-69825285 | Msa0568220:intron | 55.0% | |
| ! | GGCATTCTAGCTGGGAAAGG+AGG | - | chr4_1:69825468-69825487 | Msa0568220:CDS | 55.0% |
| CGGAGTAGCGATGGTTTGAG+TGG | + | chr4_1:69823871-69823890 | None:intergenic | 55.0% | |
| TGATCGAACGGCGGAATCTG+CGG | + | chr4_1:69823894-69823913 | None:intergenic | 55.0% | |
| GGATGAGGCTGGTGATCGAA+CGG | + | chr4_1:69823906-69823925 | None:intergenic | 55.0% | |
| GCGAATACTTCATCGGCGGA+TGG | + | chr4_1:69823939-69823958 | None:intergenic | 55.0% | |
| GCCAAGCGGAAACAGTTCCT+TGG | - | chr4_1:69823957-69823976 | Msa0568220:three_prime_UTR | 55.0% | |
| CGGCGAAATCAGCAATGGCA+TGG | + | chr4_1:69824283-69824302 | None:intergenic | 55.0% | |
| !! | TGCCATTGCTGATTTCGCCG+AGG | - | chr4_1:69824283-69824302 | Msa0568220:intron | 55.0% |
| AGCCTCGGCGAAATCAGCAA+TGG | + | chr4_1:69824288-69824307 | None:intergenic | 55.0% | |
| !! | TGCTGATTTCGCCGAGGCTT+TGG | - | chr4_1:69824289-69824308 | Msa0568220:intron | 55.0% |
| ! | TCTGGGGTGTTCGAGACACA+GGG | - | chr4_1:69824420-69824439 | Msa0568220:CDS | 55.0% |
| AAGTCCCCCGGCAGAACATA+CGG | + | chr4_1:69824880-69824899 | None:intergenic | 55.0% | |
| TCTGGATAACGAGAAGCGGC+AGG | - | chr4_1:69824914-69824933 | Msa0568220:intron | 55.0% | |
| ! | CAGGCTCATTGCGCTGATGT+TGG | - | chr4_1:69824933-69824952 | Msa0568220:intron | 55.0% |
| AGGGGAAGAGGACTGATGCT+GGG | - | chr4_1:69825266-69825285 | Msa0568220:intron | 55.0% | |
| ! | GGCATTCTAGCTGGGAAAGG+AGG | - | chr4_1:69825468-69825487 | Msa0568220:CDS | 55.0% |
| TGGCGGTGGAGGAAGAGGAT+CGG | + | chr4_1:69823845-69823864 | None:intergenic | 60.0% | |
| GATGGTTTGAGTGGCGGTGG+CGG | + | chr4_1:69823862-69823881 | None:intergenic | 60.0% | |
| AGCGATGGTTTGAGTGGCGG+TGG | + | chr4_1:69823865-69823884 | None:intergenic | 60.0% | |
| AATCTGCGGCGGAGTAGCGA+TGG | + | chr4_1:69823880-69823899 | None:intergenic | 60.0% | |
| TGAGGCTGGTGATCGAACGG+CGG | + | chr4_1:69823903-69823922 | None:intergenic | 60.0% | |
| CATCTTGGCGGCCAAAGCCT+CGG | + | chr4_1:69824303-69824322 | None:intergenic | 60.0% | |
| CTGTGTCTCGAACACCCCAG+AGG | + | chr4_1:69824421-69824440 | None:intergenic | 60.0% | |
| !! | CTCTGGGGTGTTCGAGACAC+AGG | - | chr4_1:69824419-69824438 | Msa0568220:CDS | 60.0% |
| GGGAACCCCGTATGTTCTGC+CGG | - | chr4_1:69824870-69824889 | Msa0568220:CDS | 60.0% | |
| GGAACCCCGTATGTTCTGCC+GGG | - | chr4_1:69824871-69824890 | Msa0568220:CDS | 60.0% | |
| GAACCCCGTATGTTCTGCCG+GGG | - | chr4_1:69824872-69824891 | Msa0568220:CDS | 60.0% | |
| AACCCCGTATGTTCTGCCGG+GGG | - | chr4_1:69824873-69824892 | Msa0568220:CDS | 60.0% | |
| AGTCCCCCGGCAGAACATAC+GGG | + | chr4_1:69824879-69824898 | None:intergenic | 60.0% | |
| ! | CTTGAGCACTGCAAGTCCCC+CGG | + | chr4_1:69824892-69824911 | None:intergenic | 60.0% |
| GAGGGGAAGAGGACTGATGC+TGG | - | chr4_1:69825265-69825284 | Msa0568220:intron | 60.0% | |
| GGGGAAGAGGACTGATGCTG+GGG | - | chr4_1:69825267-69825286 | Msa0568220:intron | 60.0% | |
| GGGAAGAGGACTGATGCTGG+GGG | - | chr4_1:69825268-69825287 | Msa0568220:intron | 60.0% | |
| GGGTAGAGCTTGTCACCGAC+CGG | - | chr4_1:69825288-69825307 | Msa0568220:intron | 60.0% | |
| GCTGGGAAAGGAGGACTGCA+TGG | - | chr4_1:69825477-69825496 | Msa0568220:CDS | 60.0% | |
| TGGCGGTGGAGGAAGAGGAT+CGG | + | chr4_1:69823845-69823864 | None:intergenic | 60.0% | |
| GATGGTTTGAGTGGCGGTGG+CGG | + | chr4_1:69823862-69823881 | None:intergenic | 60.0% | |
| AGCGATGGTTTGAGTGGCGG+TGG | + | chr4_1:69823865-69823884 | None:intergenic | 60.0% | |
| AATCTGCGGCGGAGTAGCGA+TGG | + | chr4_1:69823880-69823899 | None:intergenic | 60.0% | |
| TGAGGCTGGTGATCGAACGG+CGG | + | chr4_1:69823903-69823922 | None:intergenic | 60.0% | |
| CATCTTGGCGGCCAAAGCCT+CGG | + | chr4_1:69824303-69824322 | None:intergenic | 60.0% | |
| CTGTGTCTCGAACACCCCAG+AGG | + | chr4_1:69824421-69824440 | None:intergenic | 60.0% | |
| !! | CTCTGGGGTGTTCGAGACAC+AGG | - | chr4_1:69824419-69824438 | Msa0568220:CDS | 60.0% |
| GGGAACCCCGTATGTTCTGC+CGG | - | chr4_1:69824870-69824889 | Msa0568220:CDS | 60.0% | |
| GGAACCCCGTATGTTCTGCC+GGG | - | chr4_1:69824871-69824890 | Msa0568220:CDS | 60.0% | |
| GAACCCCGTATGTTCTGCCG+GGG | - | chr4_1:69824872-69824891 | Msa0568220:CDS | 60.0% | |
| AACCCCGTATGTTCTGCCGG+GGG | - | chr4_1:69824873-69824892 | Msa0568220:CDS | 60.0% | |
| AGTCCCCCGGCAGAACATAC+GGG | + | chr4_1:69824879-69824898 | None:intergenic | 60.0% | |
| ! | CTTGAGCACTGCAAGTCCCC+CGG | + | chr4_1:69824892-69824911 | None:intergenic | 60.0% |
| GAGGGGAAGAGGACTGATGC+TGG | - | chr4_1:69825265-69825284 | Msa0568220:intron | 60.0% | |
| GGGGAAGAGGACTGATGCTG+GGG | - | chr4_1:69825267-69825286 | Msa0568220:intron | 60.0% | |
| GGGAAGAGGACTGATGCTGG+GGG | - | chr4_1:69825268-69825287 | Msa0568220:intron | 60.0% | |
| GGGTAGAGCTTGTCACCGAC+CGG | - | chr4_1:69825288-69825307 | Msa0568220:intron | 60.0% | |
| GCTGGGAAAGGAGGACTGCA+TGG | - | chr4_1:69825477-69825496 | Msa0568220:CDS | 60.0% | |
| TCGAACGGCGGAATCTGCGG+CGG | + | chr4_1:69823891-69823910 | None:intergenic | 65.0% | |
| GCTTTGGCCGCCAAGATGCC+TGG | - | chr4_1:69824305-69824324 | Msa0568220:intron | 65.0% | |
| GTCCCCCGGCAGAACATACG+GGG | + | chr4_1:69824878-69824897 | None:intergenic | 65.0% | |
| CGGGGGACTTGCAGTGCTCA+AGG | - | chr4_1:69824890-69824909 | Msa0568220:CDS | 65.0% | |
| TCGAACGGCGGAATCTGCGG+CGG | + | chr4_1:69823891-69823910 | None:intergenic | 65.0% | |
| GCTTTGGCCGCCAAGATGCC+TGG | - | chr4_1:69824305-69824324 | Msa0568220:intron | 65.0% | |
| GTCCCCCGGCAGAACATACG+GGG | + | chr4_1:69824878-69824897 | None:intergenic | 65.0% | |
| CGGGGGACTTGCAGTGCTCA+AGG | - | chr4_1:69824890-69824909 | Msa0568220:CDS | 65.0% | |
| ! | TTGAGTGGCGGTGGCGGTGG+AGG | + | chr4_1:69823856-69823875 | None:intergenic | 70.0% |
| ! | GGTTTGAGTGGCGGTGGCGG+TGG | + | chr4_1:69823859-69823878 | None:intergenic | 70.0% |
| ! | TTGAGTGGCGGTGGCGGTGG+AGG | + | chr4_1:69823856-69823875 | None:intergenic | 70.0% |
| ! | GGTTTGAGTGGCGGTGGCGG+TGG | + | chr4_1:69823859-69823878 | None:intergenic | 70.0% |
| ! | GGCGGTGGCGGTGGAGGAAG+AGG | + | chr4_1:69823850-69823869 | None:intergenic | 75.0% |
| ! | GGCGGTGGCGGTGGAGGAAG+AGG | + | chr4_1:69823850-69823869 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 69823722 | 69825987 | 69823722 | ID=Msa0568220;Name=Msa0568220 |
| chr4_1 | mRNA | 69823722 | 69825987 | 69823722 | ID=Msa0568220-mRNA-1;Parent=Msa0568220;Name=Msa0568220-mRNA-1;_AED=0.45;_eAED=0.45;_QI=37|1|1|1|1|1|7|287|328 |
| chr4_1 | exon | 69823722 | 69824052 | 69823722 | ID=Msa0568220-mRNA-1:exon:23435;Parent=Msa0568220-mRNA-1 |
| chr4_1 | exon | 69824160 | 69824246 | 69824160 | ID=Msa0568220-mRNA-1:exon:23434;Parent=Msa0568220-mRNA-1 |
| chr4_1 | exon | 69824344 | 69824457 | 69824344 | ID=Msa0568220-mRNA-1:exon:23433;Parent=Msa0568220-mRNA-1 |
| chr4_1 | exon | 69824707 | 69824932 | 69824707 | ID=Msa0568220-mRNA-1:exon:23432;Parent=Msa0568220-mRNA-1 |
| chr4_1 | exon | 69825236 | 69825268 | 69825236 | ID=Msa0568220-mRNA-1:exon:23431;Parent=Msa0568220-mRNA-1 |
| chr4_1 | exon | 69825372 | 69825602 | 69825372 | ID=Msa0568220-mRNA-1:exon:23430;Parent=Msa0568220-mRNA-1 |
| chr4_1 | exon | 69825699 | 69825987 | 69825699 | ID=Msa0568220-mRNA-1:exon:23429;Parent=Msa0568220-mRNA-1 |
| chr4_1 | five_prime_UTR | 69825951 | 69825987 | 69825951 | ID=Msa0568220-mRNA-1:five_prime_utr;Parent=Msa0568220-mRNA-1 |
| chr4_1 | CDS | 69825699 | 69825950 | 69825699 | ID=Msa0568220-mRNA-1:cds;Parent=Msa0568220-mRNA-1 |
| chr4_1 | CDS | 69825372 | 69825602 | 69825372 | ID=Msa0568220-mRNA-1:cds;Parent=Msa0568220-mRNA-1 |
| chr4_1 | CDS | 69825236 | 69825268 | 69825236 | ID=Msa0568220-mRNA-1:cds;Parent=Msa0568220-mRNA-1 |
| chr4_1 | CDS | 69824707 | 69824932 | 69824707 | ID=Msa0568220-mRNA-1:cds;Parent=Msa0568220-mRNA-1 |
| chr4_1 | CDS | 69824344 | 69824457 | 69824344 | ID=Msa0568220-mRNA-1:cds;Parent=Msa0568220-mRNA-1 |
| chr4_1 | CDS | 69824160 | 69824246 | 69824160 | ID=Msa0568220-mRNA-1:cds;Parent=Msa0568220-mRNA-1 |
| chr4_1 | CDS | 69824009 | 69824052 | 69824009 | ID=Msa0568220-mRNA-1:cds;Parent=Msa0568220-mRNA-1 |
| chr4_1 | three_prime_UTR | 69823722 | 69824008 | 69823722 | ID=Msa0568220-mRNA-1:three_prime_utr;Parent=Msa0568220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
