Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571370 | XP_003630534.1 | 98.369 | 613 | 10 | 0 | 1 | 613 | 1 | 613 | 0.0 | 1249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571370 | sp|Q9FLL1|NOB1_ARATH | 55.591 | 626 | 235 | 10 | 1 | 610 | 1 | 599 | 0.0 | 677 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571370 | G7LI13 | 98.369 | 613 | 10 | 0 | 1 | 613 | 1 | 613 | 0.0 | 1249 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0571370 | Msa1209850 | 0.801795 | 7.608646e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571370 | MtrunA17_Chr8g0386641 | 98.369 | 613 | 10 | 0 | 1 | 613 | 1 | 613 | 0.0 | 1249 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571370 | AT5G41190.1 | 55.591 | 626 | 235 | 10 | 1 | 610 | 1 | 599 | 0.0 | 677 |
Find 196 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCCGCCATTTCCGCATTT+TGG | 0.159935 | 4_1:+74008364 | None:intergenic |
| TTATAAAAGAACATGATTTA+AGG | 0.189296 | 4_1:-74007396 | Msa0571370:three_prime_UTR |
| TCATCACTCTCCGGAATTTC+CGG | 0.192791 | 4_1:+74009408 | None:intergenic |
| CCAAATGGGTTTGCGCTTGC+TGG | 0.207884 | 4_1:-74008719 | Msa0571370:CDS |
| TGAAGATAGCAGTGCAAATT+TGG | 0.219331 | 4_1:-74008932 | Msa0571370:CDS |
| ATACCTTTGTTGATGGATTC+AGG | 0.224381 | 4_1:+74010389 | None:intergenic |
| GCTTCCCACTCTTCCAAATT+AGG | 0.241820 | 4_1:+74009564 | None:intergenic |
| GTCAAGTTTGCTAGGGTTAC+TGG | 0.249525 | 4_1:-74009756 | Msa0571370:CDS |
| ACATGATTTACATCATGATT+TGG | 0.256714 | 4_1:-74007332 | Msa0571370:three_prime_UTR |
| ATCTTGTTGATCTTGATTAC+TGG | 0.256732 | 4_1:+74009182 | None:intergenic |
| CCGCCGTTTATGTTTGGGTT+AGG | 0.262905 | 4_1:+74010841 | None:intergenic |
| TATGTTTGGGTTAGGGTTCT+AGG | 0.267002 | 4_1:+74010849 | None:intergenic |
| GGGTTTGAATGTGCCTAATT+TGG | 0.276019 | 4_1:-74009577 | Msa0571370:CDS |
| ATGAATGTTACCTGCGAAAT+TGG | 0.278437 | 4_1:+74010786 | None:intergenic |
| CATCTGTATAAGATTTAGTT+TGG | 0.283524 | 4_1:-74007367 | Msa0571370:three_prime_UTR |
| GATTTAGTTTGGGTGATATA+TGG | 0.283679 | 4_1:-74007356 | Msa0571370:three_prime_UTR |
| GTCTGCCGCCGTTTATGTTT+GGG | 0.293151 | 4_1:+74010836 | None:intergenic |
| TTCACTGTTACGGCTGAAAT+TGG | 0.294860 | 4_1:-74008400 | Msa0571370:CDS |
| TTTGCAAACCGAACAGGTTT+TGG | 0.297325 | 4_1:-74010606 | Msa0571370:CDS |
| CTACTCCAGCACGATGCTTT+TGG | 0.301824 | 4_1:+74010674 | None:intergenic |
| CATTGCTCTAACTTATACTT+TGG | 0.301873 | 4_1:-74009697 | Msa0571370:CDS |
| CAGGGGTTGGTTCCATGGTT+TGG | 0.303048 | 4_1:+74010408 | None:intergenic |
| GCTGTCACTGTTAATGAAAA+TGG | 0.309540 | 4_1:-74008328 | Msa0571370:CDS |
| CTTCAGCCACCACAATTCTA+AGG | 0.325731 | 4_1:-74007588 | Msa0571370:CDS |
| GGTCTGCCGCCGTTTATGTT+TGG | 0.334068 | 4_1:+74010835 | None:intergenic |
| CAGAGGAAGGATTCTTGAAT+TGG | 0.335391 | 4_1:+74009509 | None:intergenic |
| AAAAGGGATACCTTTGTTGA+TGG | 0.338974 | 4_1:+74010382 | None:intergenic |
| CGCCGTTTATGTTTGGGTTA+GGG | 0.340178 | 4_1:+74010842 | None:intergenic |
| GTAGGACGACGACTTCTATA+TGG | 0.345158 | 4_1:-74007621 | Msa0571370:intron |
| CATGATTTACATCATGATTT+GGG | 0.347176 | 4_1:-74007331 | Msa0571370:intron |
| TTAGGGTTCTAGGTGGGTTT+CGG | 0.352351 | 4_1:+74010859 | None:intergenic |
| CGCGAGTAGTGATTGTCATT+TGG | 0.353362 | 4_1:+74007506 | None:intergenic |
| TGAAACTCTTCCGGAAATTC+CGG | 0.357767 | 4_1:-74009418 | Msa0571370:CDS |
| TTCTGTCCAAAATGCGGAAA+TGG | 0.367588 | 4_1:-74008370 | Msa0571370:CDS |
| AAACACACAAACAACCTTGT+TGG | 0.376229 | 4_1:+74007759 | None:intergenic |
| CATCAGCAGCTTCACTTGAC+TGG | 0.379113 | 4_1:+74008848 | None:intergenic |
| TAATCAAGATCAACAAGATA+TGG | 0.384551 | 4_1:-74009178 | Msa0571370:CDS |
| TCTACTGTGGCCTGTATAAC+TGG | 0.386129 | 4_1:-74008769 | Msa0571370:CDS |
| GCAGAATGTTCTTCTCCAAA+TGG | 0.387712 | 4_1:-74008734 | Msa0571370:CDS |
| CCAGCAAGCGCAAACCCATT+TGG | 0.393658 | 4_1:+74008719 | None:intergenic |
| GGATTCAGGGGTTGGTTCCA+TGG | 0.393846 | 4_1:+74010403 | None:intergenic |
| ACCTGTTCGGTTTGCAAAAG+TGG | 0.399390 | 4_1:+74010611 | None:intergenic |
| GAAAGCTTATGACGAGAAAC+AGG | 0.404878 | 4_1:+74010449 | None:intergenic |
| GCACAGGAGGTGGGCTGTCC+CGG | 0.406323 | 4_1:+74009646 | None:intergenic |
| TGCAAAGTCACCAGTTATAC+AGG | 0.407508 | 4_1:+74008759 | None:intergenic |
| CAGAATGTTCTTCTCCAAAT+GGG | 0.409413 | 4_1:-74008733 | Msa0571370:CDS |
| TACCTTTGTTGATGGATTCA+GGG | 0.415644 | 4_1:+74010390 | None:intergenic |
| GGTTTGCGCTTGCTGGCACC+TGG | 0.419244 | 4_1:-74008712 | Msa0571370:CDS |
| TGTTTCTGTTCCCGAAGTTA+TGG | 0.420287 | 4_1:-74010486 | Msa0571370:CDS |
| ATGCTCTCCTGACGGGAGGC+TGG | 0.424797 | 4_1:+74007555 | None:intergenic |
| GCATACTGCTGAAACTCTTC+CGG | 0.427835 | 4_1:-74009427 | Msa0571370:CDS |
| TGCTCTAACTTATACTTTGG+AGG | 0.431975 | 4_1:-74009694 | Msa0571370:CDS |
| TGTTAGTTGTCAAGTTTGCT+AGG | 0.431988 | 4_1:-74009764 | Msa0571370:intron |
| TTCAAGAATCCTTCCTCTGC+AGG | 0.435157 | 4_1:-74009505 | Msa0571370:CDS |
| CATCCCGGCATGTCCTTCTC+AGG | 0.436359 | 4_1:+74009600 | None:intergenic |
| TTTGGAAGAGTGGGAAGCAT+TGG | 0.442947 | 4_1:-74009559 | Msa0571370:CDS |
| ATCTGTATAAGATTTAGTTT+GGG | 0.444292 | 4_1:-74007366 | Msa0571370:three_prime_UTR |
| TCCCTTCCACCTTGAGGTAA+AGG | 0.445988 | 4_1:+74007859 | None:intergenic |
| CTCCTTTCCAGCCTCCCGTC+AGG | 0.448309 | 4_1:-74007562 | Msa0571370:CDS |
| AACCCTAACCCAAACATAAA+CGG | 0.449851 | 4_1:-74010844 | Msa0571370:five_prime_UTR |
| CATCACTTTGGTGCACATCC+AGG | 0.451839 | 4_1:+74009109 | None:intergenic |
| TTCTCATTGCCTTTACCTCA+AGG | 0.454002 | 4_1:-74007868 | Msa0571370:CDS |
| GAAGCTGGTGAAAAGCTTCA+TGG | 0.455837 | 4_1:-74010524 | Msa0571370:CDS |
| GTAACAATTACCTGTGCAAC+TGG | 0.456239 | 4_1:+74008674 | None:intergenic |
| AGCATCTTCCAAAACCTGTT+CGG | 0.462532 | 4_1:+74010598 | None:intergenic |
| TTTGGGTTAGGGTTCTAGGT+GGG | 0.464210 | 4_1:+74010853 | None:intergenic |
| TGAGAAGGACATGCCGGGAT+GGG | 0.464992 | 4_1:-74009598 | Msa0571370:CDS |
| TTGTTGATGGATTCAGGGGT+TGG | 0.465250 | 4_1:+74010395 | None:intergenic |
| TGCATGTATCATATCATCCT+TGG | 0.465343 | 4_1:+74009059 | None:intergenic |
| TTTGAGGCAGTTGATCTTCA+CGG | 0.467872 | 4_1:+74007812 | None:intergenic |
| TATTGAAAATGTTGTTTCCA+AGG | 0.469382 | 4_1:-74009076 | Msa0571370:CDS |
| CGAATCTCCTCCATAACTTC+GGG | 0.471182 | 4_1:+74010476 | None:intergenic |
| TTTACTGTTTGCACAGGAGG+TGG | 0.471720 | 4_1:+74009636 | None:intergenic |
| TCATGCCTGCTTCACTGTTA+CGG | 0.473829 | 4_1:-74008410 | Msa0571370:CDS |
| CTGGAGTAGCGTAGTGAAGA+AGG | 0.480883 | 4_1:-74010660 | Msa0571370:CDS |
| CTCCTGACGGGAGGCTGGAA+AGG | 0.481280 | 4_1:+74007560 | None:intergenic |
| CTTCCATCGCAGGTGAATCA+TGG | 0.486952 | 4_1:-74010702 | Msa0571370:intron |
| ACTTTGGAGGCTCAGATTCA+CGG | 0.490488 | 4_1:-74009681 | Msa0571370:CDS |
| GATATGGAAGAAAACATTGA+TGG | 0.491605 | 4_1:-74009162 | Msa0571370:CDS |
| ATGATGCCAGTGAGCAAAGT+TGG | 0.492731 | 4_1:-74008813 | Msa0571370:CDS |
| AAATTTGCACTGCTATCTTC+AGG | 0.493660 | 4_1:+74008934 | None:intergenic |
| TTCACGGAACAAAACATCTC+CGG | 0.493961 | 4_1:-74009665 | Msa0571370:CDS |
| GTTAGTTGTCAAGTTTGCTA+GGG | 0.494452 | 4_1:-74009763 | Msa0571370:intron |
| ACCAGCTTCAATAACAGCAT+TGG | 0.494776 | 4_1:+74010538 | None:intergenic |
| GATAAACATTGAAGGGAAGA+TGG | 0.494792 | 4_1:-74009337 | Msa0571370:CDS |
| CTGCTTCAGAGTTGCAGAGA+GGG | 0.496308 | 4_1:+74009017 | None:intergenic |
| GTGGATATTCAAAACTTGGC+TGG | 0.497458 | 4_1:-74007471 | Msa0571370:three_prime_UTR |
| AAAAGTGGTGGTTGTTGTTG+AGG | 0.498253 | 4_1:+74010626 | None:intergenic |
| TTCAGCCGTAACAGTGAAGC+AGG | 0.498497 | 4_1:+74008405 | None:intergenic |
| CTATCTTCAGGAGACAGACT+TGG | 0.499148 | 4_1:+74008946 | None:intergenic |
| CACAGATACACCAGTTGCAC+AGG | 0.501209 | 4_1:-74008684 | Msa0571370:intron |
| TAATGTAACTCGAGGTCGAC+GGG | 0.502431 | 4_1:+74008291 | None:intergenic |
| TGATCAATCTGAGGTTGGTT+CGG | 0.503635 | 4_1:-74009454 | Msa0571370:CDS |
| CTGAGAAGGACATGCCGGGA+TGG | 0.508366 | 4_1:-74009599 | Msa0571370:CDS |
| TATGCTTCTCATCATCACTT+TGG | 0.511242 | 4_1:+74009097 | None:intergenic |
| ACATTTACTGTTTGCACAGG+AGG | 0.511908 | 4_1:+74009633 | None:intergenic |
| TCCATGGTTTGGATATCAAA+GGG | 0.512366 | 4_1:+74010419 | None:intergenic |
| ACCTTTGTTGATGGATTCAG+GGG | 0.512889 | 4_1:+74010391 | None:intergenic |
| AGAGTGGGAAGCATTGGAAC+AGG | 0.513153 | 4_1:-74009553 | Msa0571370:CDS |
| TGCCTTTACCTCAAGGTGGA+AGG | 0.513861 | 4_1:-74007861 | Msa0571370:CDS |
| ACGAATCTCCTCCATAACTT+CGG | 0.517914 | 4_1:+74010475 | None:intergenic |
| GCCAATGCTGTTATTGAAGC+TGG | 0.519074 | 4_1:-74010539 | Msa0571370:CDS |
| GTGAAGATCAACTGCCTCAA+AGG | 0.522194 | 4_1:-74007810 | Msa0571370:CDS |
| ACTTCTGAGTAAATAGCAGA+TGG | 0.522741 | 4_1:+74007138 | None:intergenic |
| AGTAGTGGATATTCAAAACT+TGG | 0.522912 | 4_1:-74007475 | Msa0571370:exon |
| CTGTTACGGCTGAAATTGGA+AGG | 0.526837 | 4_1:-74008396 | Msa0571370:CDS |
| TTCCATGGTTTGGATATCAA+AGG | 0.530246 | 4_1:+74010418 | None:intergenic |
| GTTGCTAATGCTCTCCTGAC+GGG | 0.532845 | 4_1:+74007548 | None:intergenic |
| ATTGGAATTTGCATTGTCCT+CGG | 0.533440 | 4_1:+74009527 | None:intergenic |
| AAGCAGATGACTCTGGAAGA+AGG | 0.534641 | 4_1:-74009000 | Msa0571370:CDS |
| AAAGAACATGATTTAAGGCA+TGG | 0.535216 | 4_1:-74007391 | Msa0571370:three_prime_UTR |
| GAGAAGGACATGCCGGGATG+GGG | 0.535504 | 4_1:-74009597 | Msa0571370:CDS |
| TTCACATTTACTGTTTGCAC+AGG | 0.537571 | 4_1:+74009630 | None:intergenic |
| AACTCTGAAGCAGATGACTC+TGG | 0.540443 | 4_1:-74009007 | Msa0571370:CDS |
| TGGTGTATCTGTGATCCTCC+AGG | 0.544263 | 4_1:+74008694 | None:intergenic |
| AAGCATCCAACTTTGCTCAC+TGG | 0.546095 | 4_1:+74008807 | None:intergenic |
| TGAAGATCAACTGCCTCAAA+GGG | 0.546216 | 4_1:-74007809 | Msa0571370:CDS |
| GCCTTTACCTCAAGGTGGAA+GGG | 0.547026 | 4_1:-74007860 | Msa0571370:CDS |
| TTAGGATGAAGTACCCTTTG+AGG | 0.550596 | 4_1:+74007796 | None:intergenic |
| TGTGAAGAGGTTGCCTGAGA+AGG | 0.551471 | 4_1:-74009613 | Msa0571370:CDS |
| AGATGATAAGACTTCAAACC+TGG | 0.551742 | 4_1:-74009127 | Msa0571370:CDS |
| ATCAAATCATCCAATTTCGC+AGG | 0.553684 | 4_1:-74010796 | Msa0571370:intron |
| TCACGGAACAAAACATCTCC+GGG | 0.553706 | 4_1:-74009664 | Msa0571370:CDS |
| AAGAACCAAAAGCATCGTGC+TGG | 0.559027 | 4_1:-74010679 | Msa0571370:CDS |
| GTTGCCTGAGAAGGACATGC+CGG | 0.561370 | 4_1:-74009604 | Msa0571370:CDS |
| CAAGATGATCAATCTGAGGT+TGG | 0.562902 | 4_1:-74009459 | Msa0571370:CDS |
| GTTTGGGTTAGGGTTCTAGG+TGG | 0.563064 | 4_1:+74010852 | None:intergenic |
| AACTCAAGTCCTGCAGAGGA+AGG | 0.563302 | 4_1:+74009496 | None:intergenic |
| TAACAGCATTAAAACTCATG+AGG | 0.565655 | 4_1:+74007112 | None:intergenic |
| GGCACATTCAAACCCCATCC+CGG | 0.567117 | 4_1:+74009585 | None:intergenic |
| AGAGCATTAGCAACTTTCAG+TGG | 0.569217 | 4_1:-74007539 | Msa0571370:CDS |
| TTACTGTTTGCACAGGAGGT+GGG | 0.570348 | 4_1:+74009637 | None:intergenic |
| TGGGTTTCGGAAGACAATGC+TGG | 0.572965 | 4_1:+74010872 | None:intergenic |
| GAGCATTAGCAACTTTCAGT+GGG | 0.573278 | 4_1:-74007538 | Msa0571370:CDS |
| CTGTCAGTCGTAGTACTCAC+AGG | 0.574410 | 4_1:-74009251 | Msa0571370:CDS |
| AACAGCATTAAAACTCATGA+GGG | 0.575438 | 4_1:+74007113 | None:intergenic |
| TTGATGACAATGGAGGTGAT+TGG | 0.580996 | 4_1:-74009281 | Msa0571370:CDS |
| TTGCCTGAGAAGGACATGCC+GGG | 0.581019 | 4_1:-74009603 | Msa0571370:CDS |
| TCCTCAAGATGATCAATCTG+AGG | 0.581434 | 4_1:-74009463 | Msa0571370:CDS |
| CCGCCACGTTCATCACTCTC+CGG | 0.581461 | 4_1:+74009399 | None:intergenic |
| ACTCGCGCCCGCGTAAGTAG+TGG | 0.583183 | 4_1:-74007490 | Msa0571370:exon |
| CTTCTGAGTAAATAGCAGAT+GGG | 0.585984 | 4_1:+74007139 | None:intergenic |
| ATCTTTGTCTGAATCTACTG+TGG | 0.586024 | 4_1:-74008782 | Msa0571370:CDS |
| AGTTGCTAATGCTCTCCTGA+CGG | 0.586879 | 4_1:+74007547 | None:intergenic |
| TAATGAAAATGGATTAATGA+TGG | 0.587751 | 4_1:-74008317 | Msa0571370:CDS |
| GCGAAATTGGATGATTTGAT+CGG | 0.588831 | 4_1:+74010799 | None:intergenic |
| TCCCTTTGATATCCAAACCA+TGG | 0.589516 | 4_1:-74010420 | Msa0571370:CDS |
| GAGTTACATTACGTGGCACA+AGG | 0.590124 | 4_1:-74008279 | Msa0571370:CDS |
| GGTGGTTGTTGTTGAGGTGG+CGG | 0.590472 | 4_1:+74010632 | None:intergenic |
| TTCTGTTCCCGAAGTTATGG+AGG | 0.592948 | 4_1:-74010483 | Msa0571370:CDS |
| TGAGTACTACGACTGACAGC+AGG | 0.594924 | 4_1:+74009255 | None:intergenic |
| AAGGAGATCCCTTAGAATTG+TGG | 0.596504 | 4_1:+74007579 | None:intergenic |
| TTGAATATCCACTACTTACG+CGG | 0.598952 | 4_1:+74007482 | None:intergenic |
| TTGCGCTTGCTGGCACCTGG+AGG | 0.601247 | 4_1:-74008709 | Msa0571370:CDS |
| TTCAGCCACCACAATTCTAA+GGG | 0.601789 | 4_1:-74007587 | Msa0571370:CDS |
| GCGGAAATGGCGGCACCTTG+AGG | 0.602253 | 4_1:-74008357 | Msa0571370:CDS |
| GAAGATGCTCGTAACCGTCA+TGG | 0.602557 | 4_1:-74010584 | Msa0571370:CDS |
| AAATGGCGGCACCTTGAGGA+AGG | 0.606950 | 4_1:-74008353 | Msa0571370:CDS |
| CGACCTCGAGTTACATTACG+TGG | 0.607023 | 4_1:-74008286 | Msa0571370:CDS |
| ATGTGCCTAATTTGGAAGAG+TGG | 0.608543 | 4_1:-74009569 | Msa0571370:CDS |
| ACCTCAGATTGATCATCTTG+AGG | 0.608905 | 4_1:+74009462 | None:intergenic |
| AACAAGGAAGAAAGCCAACA+AGG | 0.609876 | 4_1:-74007773 | Msa0571370:intron |
| TTGATCGGATGTGTGTGAAA+AGG | 0.610777 | 4_1:+74010814 | None:intergenic |
| TGGTTTGGATATCAAAGGGA+AGG | 0.619954 | 4_1:+74010423 | None:intergenic |
| TGTGCCTAATTTGGAAGAGT+GGG | 0.621322 | 4_1:-74009568 | Msa0571370:CDS |
| CAATGACATAGTAAATCACT+CGG | 0.621478 | 4_1:-74008881 | Msa0571370:CDS |
| TGTCCAAAATGCGGAAATGG+CGG | 0.624434 | 4_1:-74008367 | Msa0571370:CDS |
| CAAGGACAAGTTGATGACAA+TGG | 0.627479 | 4_1:-74009291 | Msa0571370:CDS |
| TTCAAACTCAAGTCCTGCAG+AGG | 0.629113 | 4_1:+74009492 | None:intergenic |
| AGTGGTGGTTGTTGTTGAGG+TGG | 0.629632 | 4_1:+74010629 | None:intergenic |
| GAAGGGAAGATGGTTGCTGA+TGG | 0.630809 | 4_1:-74009327 | Msa0571370:CDS |
| TGAATATCCACTACTTACGC+GGG | 0.635815 | 4_1:+74007483 | None:intergenic |
| GGACGACGACTTCTATATGG+TGG | 0.638637 | 4_1:-74007618 | Msa0571370:CDS |
| ACTGCATCCCTTCCACCTTG+AGG | 0.639336 | 4_1:+74007853 | None:intergenic |
| GGGTACTTCATCCTAAAACA+AGG | 0.642784 | 4_1:-74007789 | Msa0571370:CDS |
| GATGGAATTGATGCATCTCA+AGG | 0.646560 | 4_1:-74009309 | Msa0571370:CDS |
| TGCAAACAGTAAATGTGAAG+AGG | 0.648385 | 4_1:-74009626 | Msa0571370:CDS |
| TGTTCGGTTTGCAAAAGTGG+TGG | 0.649007 | 4_1:+74010614 | None:intergenic |
| GAGATCCCTTAGAATTGTGG+TGG | 0.651673 | 4_1:+74007582 | None:intergenic |
| GCTAATGCTCTCCTGACGGG+AGG | 0.659205 | 4_1:+74007551 | None:intergenic |
| ACCCCTGAATCCATCAACAA+AGG | 0.662188 | 4_1:-74010392 | Msa0571370:intron |
| AGTGACAGCTACCTTCCTCA+AGG | 0.664365 | 4_1:+74008342 | None:intergenic |
| GTAATGTAACTCGAGGTCGA+CGG | 0.674307 | 4_1:+74008290 | None:intergenic |
| TCATTGCCTTTACCTCAAGG+TGG | 0.675530 | 4_1:-74007865 | Msa0571370:CDS |
| GTGCCACGTAATGTAACTCG+AGG | 0.676345 | 4_1:+74008283 | None:intergenic |
| ATACATGCAGAGAACAATGA+CGG | 0.679329 | 4_1:-74009045 | Msa0571370:CDS |
| ATGAACGTGGCGGTTCAATG+AGG | 0.682906 | 4_1:-74009389 | Msa0571370:CDS |
| GGACAAGTTGATGACAATGG+AGG | 0.685424 | 4_1:-74009288 | Msa0571370:CDS |
| GAGTAGCGTAGTGAAGAAGG+AGG | 0.690050 | 4_1:-74010657 | Msa0571370:CDS |
| AGCATTGGAACAGGAAACCG+AGG | 0.692406 | 4_1:-74009544 | Msa0571370:CDS |
| TCTGCTTCAGAGTTGCAGAG+AGG | 0.696099 | 4_1:+74009016 | None:intergenic |
| AGTTACATTACGTGGCACAA+GGG | 0.712686 | 4_1:-74008278 | Msa0571370:intron |
| CCTAACCCAAACATAAACGG+CGG | 0.717794 | 4_1:-74010841 | Msa0571370:five_prime_UTR |
| ATTCCGGAGAGTGATGAACG+TGG | 0.742400 | 4_1:-74009402 | Msa0571370:CDS |
| CCGGAGAGTGATGAACGTGG+CGG | 0.753397 | 4_1:-74009399 | Msa0571370:CDS |
| CAGCAACAGAGATACCATGA+CGG | 0.755141 | 4_1:+74010570 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAGTTAAAAAACAAAAA+GGG | + | chr4_1:74007591-74007610 | None:intergenic | 10.0% |
| !! | TTAAAAGTTAAAAAACAAAA+AGG | + | chr4_1:74007592-74007611 | None:intergenic | 10.0% |
| !!! | ATATATATGAAAGTATATTT+TGG | - | chr4_1:74008129-74008148 | Msa0571370:intron | 10.0% |
| !!! | ATTTTGTTTTTTATTGCTAT+TGG | - | chr4_1:74010522-74010541 | Msa0571370:CDS | 15.0% |
| !! | TTATAAAAGAACATGATTTA+AGG | - | chr4_1:74010558-74010577 | Msa0571370:CDS | 15.0% |
| !!! | ATGTTTATCACTTTTTTCTT+AGG | + | chr4_1:74008606-74008625 | None:intergenic | 20.0% |
| !! | AAAAAAGTGATAAACATTGA+AGG | - | chr4_1:74008609-74008628 | Msa0571370:intron | 20.0% |
| !! | AAAAAGTGATAAACATTGAA+GGG | - | chr4_1:74008610-74008629 | Msa0571370:intron | 20.0% |
| !! | AAAATTTACTTCAAATAGCA+AGG | + | chr4_1:74009343-74009362 | None:intergenic | 20.0% |
| !!! | TAAATTTTTGAATGTGTGAA+GGG | - | chr4_1:74009355-74009374 | Msa0571370:CDS | 20.0% |
| !!! | TAATGAAAATGGATTAATGA+TGG | - | chr4_1:74009637-74009656 | Msa0571370:CDS | 20.0% |
| !! | GATTATAATGTATTTCACAT+TGG | - | chr4_1:74009872-74009891 | Msa0571370:intron | 20.0% |
| !!! | AGATATTGATTTTCATTTGT+AGG | - | chr4_1:74009950-74009969 | Msa0571370:intron | 20.0% |
| !! | ATAATCATGTATCTTAAGAA+TGG | - | chr4_1:74009974-74009993 | Msa0571370:intron | 20.0% |
| !! | AATAAAAAACAAAATTGAGG+GGG | + | chr4_1:74010517-74010536 | None:intergenic | 20.0% |
| !! | CAATAAAAAACAAAATTGAG+GGG | + | chr4_1:74010518-74010537 | None:intergenic | 20.0% |
| !! | GCAATAAAAAACAAAATTGA+GGG | + | chr4_1:74010519-74010538 | None:intergenic | 20.0% |
| !! | AGCAATAAAAAACAAAATTG+AGG | + | chr4_1:74010520-74010539 | None:intergenic | 20.0% |
| !!! | ATCTGTATAAGATTTAGTTT+GGG | - | chr4_1:74010588-74010607 | Msa0571370:CDS | 20.0% |
| !!! | TAATCGATAATTTTAGAGTA+CGG | - | chr4_1:74010866-74010885 | Msa0571370:five_prime_UTR | 20.0% |
| !!! | GTTGTTTTTATATGCCATAA+AGG | - | chr4_1:74007864-74007883 | Msa0571370:CDS | 25.0% |
| !! | TTTTCACAAATTCTCCTTTA+TGG | + | chr4_1:74007881-74007900 | None:intergenic | 25.0% |
| ! | AACATAAGCAGTTATATGAA+AGG | - | chr4_1:74008033-74008052 | Msa0571370:intron | 25.0% |
| ! | CAGTTATATGAAAGGATAAT+CGG | - | chr4_1:74008041-74008060 | Msa0571370:intron | 25.0% |
| !!! | GTATATTTTGGATTCTAACT+TGG | - | chr4_1:74008141-74008160 | Msa0571370:intron | 25.0% |
| ! | TAATCAAGATCAACAAGATA+TGG | - | chr4_1:74008776-74008795 | Msa0571370:CDS | 25.0% |
| !!! | TATTGAAAATGTTGTTTCCA+AGG | - | chr4_1:74008878-74008897 | Msa0571370:CDS | 25.0% |
| !! | GTAAATTTTTGAATGTGTGA+AGG | - | chr4_1:74009354-74009373 | Msa0571370:CDS | 25.0% |
| ! | TCATAGAGATTAGAAGAAAT+AGG | + | chr4_1:74009441-74009460 | None:intergenic | 25.0% |
| ! | TTAATTATTTGCATTCCAGA+TGG | - | chr4_1:74009510-74009529 | Msa0571370:CDS | 25.0% |
| ! | TAAAATGACTAGCATACTAA+GGG | + | chr4_1:74009750-74009769 | None:intergenic | 25.0% |
| ! | ATAAAATGACTAGCATACTA+AGG | + | chr4_1:74009751-74009770 | None:intergenic | 25.0% |
| ! | TACTTAATAACACACTTTGT+AGG | - | chr4_1:74010315-74010334 | Msa0571370:intron | 25.0% |
| !!! | TGTTTTTTATTGCTATTGGA+AGG | - | chr4_1:74010526-74010545 | Msa0571370:CDS | 25.0% |
| ! | CATCTGTATAAGATTTAGTT+TGG | - | chr4_1:74010587-74010606 | Msa0571370:CDS | 25.0% |
| ! | ACATGATTTACATCATGATT+TGG | - | chr4_1:74010622-74010641 | Msa0571370:CDS | 25.0% |
| ! | CATGATTTACATCATGATTT+GGG | - | chr4_1:74010623-74010642 | Msa0571370:CDS | 25.0% |
| ! | AAATAACCAAAACCATTGTT+GGG | + | chr4_1:74010776-74010795 | None:intergenic | 25.0% |
| !! | AGCTATTCTAAAGAGTTTTC+AGG | + | chr4_1:74007700-74007719 | None:intergenic | 30.0% |
| !! | CTACTGATATAAGTTTTGTG+AGG | + | chr4_1:74007964-74007983 | None:intergenic | 30.0% |
| CCTGTTTGGATAAATAACTT+AGG | + | chr4_1:74008070-74008089 | None:intergenic | 30.0% | |
| CCTAAGTTATTTATCCAAAC+AGG | - | chr4_1:74008067-74008086 | Msa0571370:intron | 30.0% | |
| TTATATACTAAGGTCCTGTT+TGG | + | chr4_1:74008084-74008103 | None:intergenic | 30.0% | |
| ! | ACACAAGGCATTATATACTA+AGG | + | chr4_1:74008094-74008113 | None:intergenic | 30.0% |
| TACAAACAAACAGAAACACA+AGG | + | chr4_1:74008109-74008128 | None:intergenic | 30.0% | |
| !!! | TTGGAACTCTTTTTTACCAT+TGG | - | chr4_1:74008160-74008179 | Msa0571370:intron | 30.0% |
| !!! | TGGAACTCTTTTTTACCATT+GGG | - | chr4_1:74008161-74008180 | Msa0571370:intron | 30.0% |
| CATTGCTCTAACTTATACTT+TGG | - | chr4_1:74008257-74008276 | Msa0571370:intron | 30.0% | |
| ATCTTGTTGATCTTGATTAC+TGG | + | chr4_1:74008775-74008794 | None:intergenic | 30.0% | |
| GATATGGAAGAAAACATTGA+TGG | - | chr4_1:74008792-74008811 | Msa0571370:CDS | 30.0% | |
| CAATGACATAGTAAATCACT+CGG | - | chr4_1:74009073-74009092 | Msa0571370:CDS | 30.0% | |
| ATTGTTACTAGTTAGTTGCA+CGG | - | chr4_1:74009295-74009314 | Msa0571370:CDS | 30.0% | |
| TGAGTATATTACGAGATACT+GGG | - | chr4_1:74009699-74009718 | Msa0571370:CDS | 30.0% | |
| TTGTTGAATGCTAGATTCAT+GGG | - | chr4_1:74009811-74009830 | Msa0571370:intron | 30.0% | |
| TATCTATCTAAGAGAACTTG+CGG | + | chr4_1:74009935-74009954 | None:intergenic | 30.0% | |
| !! | AGTAGTGGATATTCAAAACT+TGG | - | chr4_1:74010479-74010498 | Msa0571370:CDS | 30.0% |
| ! | AAAGAACATGATTTAAGGCA+TGG | - | chr4_1:74010563-74010582 | Msa0571370:CDS | 30.0% |
| !! | GATTTAGTTTGGGTGATATA+TGG | - | chr4_1:74010598-74010617 | Msa0571370:CDS | 30.0% |
| !!! | ATTTGGGTTTTATTTGCCTA+GGG | - | chr4_1:74010639-74010658 | Msa0571370:CDS | 30.0% |
| GATTCTATTGTAGAATGAAG+AGG | + | chr4_1:74010738-74010757 | None:intergenic | 30.0% | |
| CTTTAAATACTTCCCAACAA+TGG | - | chr4_1:74010761-74010780 | Msa0571370:intron | 30.0% | |
| GAAATAACCAAAACCATTGT+TGG | + | chr4_1:74010777-74010796 | None:intergenic | 30.0% | |
| !!! | ATGGTTTTGGTTATTTCTTC+TGG | - | chr4_1:74010780-74010799 | Msa0571370:intron | 30.0% |
| AACAGCATTAAAACTCATGA+GGG | + | chr4_1:74010844-74010863 | None:intergenic | 30.0% | |
| TAACAGCATTAAAACTCATG+AGG | + | chr4_1:74010845-74010864 | None:intergenic | 30.0% | |
| AACCCTAACCCAAACATAAA+CGG | - | chr4_1:74007110-74007129 | Msa0571370:three_prime_UTR | 35.0% | |
| GCGAAATTGGATGATTTGAT+CGG | + | chr4_1:74007158-74007177 | None:intergenic | 35.0% | |
| ATCAAATCATCCAATTTCGC+AGG | - | chr4_1:74007158-74007177 | Msa0571370:three_prime_UTR | 35.0% | |
| ATGAATGTTACCTGCGAAAT+TGG | + | chr4_1:74007171-74007190 | None:intergenic | 35.0% | |
| ! | TCCATGGTTTGGATATCAAA+GGG | + | chr4_1:74007538-74007557 | None:intergenic | 35.0% |
| ! | TTCCATGGTTTGGATATCAA+AGG | + | chr4_1:74007539-74007558 | None:intergenic | 35.0% |
| !! | TACCTTTGTTGATGGATTCA+GGG | + | chr4_1:74007567-74007586 | None:intergenic | 35.0% |
| !! | ATACCTTTGTTGATGGATTC+AGG | + | chr4_1:74007568-74007587 | None:intergenic | 35.0% |
| AAAAGGGATACCTTTGTTGA+TGG | + | chr4_1:74007575-74007594 | None:intergenic | 35.0% | |
| AATAAGCTGACAACGAGTTA+TGG | + | chr4_1:74007677-74007696 | None:intergenic | 35.0% | |
| !! | TAAGTTTTGTGAGGCTGTTT+TGG | + | chr4_1:74007955-74007974 | None:intergenic | 35.0% |
| !! | TTCTAAAAGTGCTTATGAGC+TGG | + | chr4_1:74008012-74008031 | None:intergenic | 35.0% |
| !!! | TCTTTTTTACCATTGGGATG+TGG | - | chr4_1:74008167-74008186 | Msa0571370:intron | 35.0% |
| ! | TGTTAGTTGTCAAGTTTGCT+AGG | - | chr4_1:74008190-74008209 | Msa0571370:intron | 35.0% |
| !! | GTTAGTTGTCAAGTTTGCTA+GGG | - | chr4_1:74008191-74008210 | Msa0571370:intron | 35.0% |
| TGCTCTAACTTATACTTTGG+AGG | - | chr4_1:74008260-74008279 | Msa0571370:intron | 35.0% | |
| TTCACATTTACTGTTTGCAC+AGG | + | chr4_1:74008327-74008346 | None:intergenic | 35.0% | |
| TGCAAACAGTAAATGTGAAG+AGG | - | chr4_1:74008328-74008347 | Msa0571370:CDS | 35.0% | |
| ATTGGAATTTGCATTGTCCT+CGG | + | chr4_1:74008430-74008449 | None:intergenic | 35.0% | |
| GATAAACATTGAAGGGAAGA+TGG | - | chr4_1:74008617-74008636 | Msa0571370:intron | 35.0% | |
| AGATGATAAGACTTCAAACC+TGG | - | chr4_1:74008827-74008846 | Msa0571370:CDS | 35.0% | |
| TATGCTTCTCATCATCACTT+TGG | + | chr4_1:74008860-74008879 | None:intergenic | 35.0% | |
| TGCATGTATCATATCATCCT+TGG | + | chr4_1:74008898-74008917 | None:intergenic | 35.0% | |
| ATACATGCAGAGAACAATGA+CGG | - | chr4_1:74008909-74008928 | Msa0571370:CDS | 35.0% | |
| AAATTTGCACTGCTATCTTC+AGG | + | chr4_1:74009023-74009042 | None:intergenic | 35.0% | |
| TGAAGATAGCAGTGCAAATT+TGG | - | chr4_1:74009022-74009041 | Msa0571370:CDS | 35.0% | |
| ATCTTTGTCTGAATCTACTG+TGG | - | chr4_1:74009172-74009191 | Msa0571370:CDS | 35.0% | |
| CAGAATGTTCTTCTCCAAAT+GGG | - | chr4_1:74009221-74009240 | Msa0571370:CDS | 35.0% | |
| TTACTTCAAATAGCAAGGAC+AGG | + | chr4_1:74009338-74009357 | None:intergenic | 35.0% | |
| AATAGCATATTGTGCTTCGT+AGG | + | chr4_1:74009470-74009489 | None:intergenic | 35.0% | |
| ! | AGGATTTTCTGTCCAAAATG+CGG | - | chr4_1:74009578-74009597 | Msa0571370:CDS | 35.0% |
| GCTGTCACTGTTAATGAAAA+TGG | - | chr4_1:74009626-74009645 | Msa0571370:CDS | 35.0% | |
| GTGAGTATATTACGAGATAC+TGG | - | chr4_1:74009698-74009717 | Msa0571370:CDS | 35.0% | |
| GTTGTTGAATGCTAGATTCA+TGG | - | chr4_1:74009810-74009829 | Msa0571370:intron | 35.0% | |
| AATGTATTTCACATTGGTCC+TGG | - | chr4_1:74009878-74009897 | Msa0571370:intron | 35.0% | |
| ATCAGATCTTATATCTCTCC+AGG | + | chr4_1:74009899-74009918 | None:intergenic | 35.0% | |
| TGGTTAAACCATGTACAAGA+TGG | - | chr4_1:74009994-74010013 | Msa0571370:intron | 35.0% | |
| GGTTAAACCATGTACAAGAT+GGG | - | chr4_1:74009995-74010014 | Msa0571370:intron | 35.0% | |
| ATATCATCCCATCTTGTACA+TGG | + | chr4_1:74010005-74010024 | None:intergenic | 35.0% | |
| !!! | TTGGCTTTCTTCCTTGTTTT+AGG | + | chr4_1:74010179-74010198 | None:intergenic | 35.0% |
| AAACACACAAACAACCTTGT+TGG | + | chr4_1:74010198-74010217 | None:intergenic | 35.0% | |
| TTGAATATCCACTACTTACG+CGG | + | chr4_1:74010475-74010494 | None:intergenic | 35.0% | |
| !!! | GATTTGGGTTTTATTTGCCT+AGG | - | chr4_1:74010638-74010657 | Msa0571370:CDS | 35.0% |
| !!! | CTCCTTTCCTTTTTTTGATG+CGG | - | chr4_1:74010664-74010683 | Msa0571370:CDS | 35.0% |
| AACCGCATCAAAAAAAGGAA+AGG | + | chr4_1:74010669-74010688 | None:intergenic | 35.0% | |
| GAGTTAACCGCATCAAAAAA+AGG | + | chr4_1:74010674-74010693 | None:intergenic | 35.0% | |
| ! | ATACTTCCCAACAATGGTTT+TGG | - | chr4_1:74010767-74010786 | Msa0571370:intron | 35.0% |
| CTTCTGAGTAAATAGCAGAT+GGG | + | chr4_1:74010818-74010837 | None:intergenic | 35.0% | |
| ACTTCTGAGTAAATAGCAGA+TGG | + | chr4_1:74010819-74010838 | None:intergenic | 35.0% | |
| ! | TATGTTTGGGTTAGGGTTCT+AGG | + | chr4_1:74007108-74007127 | None:intergenic | 40.0% |
| TTGATCGGATGTGTGTGAAA+AGG | + | chr4_1:74007143-74007162 | None:intergenic | 40.0% | |
| ! | AAAAGTGGTGGTTGTTGTTG+AGG | + | chr4_1:74007331-74007350 | None:intergenic | 40.0% |
| ! | TTTGCAAACCGAACAGGTTT+TGG | - | chr4_1:74007348-74007367 | Msa0571370:three_prime_UTR | 40.0% |
| AGCATCTTCCAAAACCTGTT+CGG | + | chr4_1:74007359-74007378 | None:intergenic | 40.0% | |
| ACCAGCTTCAATAACAGCAT+TGG | + | chr4_1:74007419-74007438 | None:intergenic | 40.0% | |
| ! | TGTTTCTGTTCCCGAAGTTA+TGG | - | chr4_1:74007468-74007487 | Msa0571370:three_prime_UTR | 40.0% |
| ACGAATCTCCTCCATAACTT+CGG | + | chr4_1:74007482-74007501 | None:intergenic | 40.0% | |
| GAAAGCTTATGACGAGAAAC+AGG | + | chr4_1:74007508-74007527 | None:intergenic | 40.0% | |
| ! | TGGTTTGGATATCAAAGGGA+AGG | + | chr4_1:74007534-74007553 | None:intergenic | 40.0% |
| TCCCTTTGATATCCAAACCA+TGG | - | chr4_1:74007534-74007553 | Msa0571370:CDS | 40.0% | |
| !! | ACCTTTGTTGATGGATTCAG+GGG | + | chr4_1:74007566-74007585 | None:intergenic | 40.0% |
| AACGACATTCCTACTTGTGT+AGG | - | chr4_1:74007621-74007640 | Msa0571370:intron | 40.0% | |
| TAAGCTCTTCCTACACAAGT+AGG | + | chr4_1:74007633-74007652 | None:intergenic | 40.0% | |
| ! | AAAGTGCTTATGAGCTGGTT+TGG | + | chr4_1:74008007-74008026 | None:intergenic | 40.0% |
| TTCACGGAACAAAACATCTC+CGG | - | chr4_1:74008289-74008308 | Msa0571370:CDS | 40.0% | |
| ACATTTACTGTTTGCACAGG+AGG | + | chr4_1:74008324-74008343 | None:intergenic | 40.0% | |
| GGGTTTGAATGTGCCTAATT+TGG | - | chr4_1:74008377-74008396 | Msa0571370:CDS | 40.0% | |
| ATGTGCCTAATTTGGAAGAG+TGG | - | chr4_1:74008385-74008404 | Msa0571370:CDS | 40.0% | |
| TGTGCCTAATTTGGAAGAGT+GGG | - | chr4_1:74008386-74008405 | Msa0571370:CDS | 40.0% | |
| CAGAGGAAGGATTCTTGAAT+TGG | + | chr4_1:74008448-74008467 | None:intergenic | 40.0% | |
| TCCTCAAGATGATCAATCTG+AGG | - | chr4_1:74008491-74008510 | Msa0571370:intron | 40.0% | |
| ACCTCAGATTGATCATCTTG+AGG | + | chr4_1:74008495-74008514 | None:intergenic | 40.0% | |
| ! | CAAGATGATCAATCTGAGGT+TGG | - | chr4_1:74008495-74008514 | Msa0571370:intron | 40.0% |
| ! | TGATCAATCTGAGGTTGGTT+CGG | - | chr4_1:74008500-74008519 | Msa0571370:intron | 40.0% |
| TGAAACTCTTCCGGAAATTC+CGG | - | chr4_1:74008536-74008555 | Msa0571370:intron | 40.0% | |
| GATGGAATTGATGCATCTCA+AGG | - | chr4_1:74008645-74008664 | Msa0571370:intron | 40.0% | |
| !! | CAAGGACAAGTTGATGACAA+TGG | - | chr4_1:74008663-74008682 | Msa0571370:intron | 40.0% |
| ! | TTGATGACAATGGAGGTGAT+TGG | - | chr4_1:74008673-74008692 | Msa0571370:intron | 40.0% |
| TGCAAAGTCACCAGTTATAC+AGG | + | chr4_1:74009198-74009217 | None:intergenic | 40.0% | |
| GCAGAATGTTCTTCTCCAAA+TGG | - | chr4_1:74009220-74009239 | Msa0571370:CDS | 40.0% | |
| GTAACAATTACCTGTGCAAC+TGG | + | chr4_1:74009283-74009302 | None:intergenic | 40.0% | |
| ATGACACTTGAGTATCCATC+TGG | + | chr4_1:74009528-74009547 | None:intergenic | 40.0% | |
| TTCACTGTTACGGCTGAAAT+TGG | - | chr4_1:74009554-74009573 | Msa0571370:CDS | 40.0% | |
| TTCTGTCCAAAATGCGGAAA+TGG | - | chr4_1:74009584-74009603 | Msa0571370:CDS | 40.0% | |
| AGTTACATTACGTGGCACAA+GGG | - | chr4_1:74009676-74009695 | Msa0571370:CDS | 40.0% | |
| AACGAGTTCTTTCAGTCACT+TGG | - | chr4_1:74009776-74009795 | Msa0571370:intron | 40.0% | |
| TTCTCATTGCCTTTACCTCA+AGG | - | chr4_1:74010086-74010105 | Msa0571370:intron | 40.0% | |
| ! | TTTGAGGCAGTTGATCTTCA+CGG | + | chr4_1:74010145-74010164 | None:intergenic | 40.0% |
| TGAAGATCAACTGCCTCAAA+GGG | - | chr4_1:74010145-74010164 | Msa0571370:intron | 40.0% | |
| ! | TTAGGATGAAGTACCCTTTG+AGG | + | chr4_1:74010161-74010180 | None:intergenic | 40.0% |
| GGGTACTTCATCCTAAAACA+AGG | - | chr4_1:74010165-74010184 | Msa0571370:intron | 40.0% | |
| AACAAGGAAGAAAGCCAACA+AGG | - | chr4_1:74010181-74010200 | Msa0571370:intron | 40.0% | |
| TTCAGCCACCACAATTCTAA+GGG | - | chr4_1:74010367-74010386 | Msa0571370:intron | 40.0% | |
| AAGGAGATCCCTTAGAATTG+TGG | + | chr4_1:74010378-74010397 | None:intergenic | 40.0% | |
| ! | AGAGCATTAGCAACTTTCAG+TGG | - | chr4_1:74010415-74010434 | Msa0571370:CDS | 40.0% |
| GAGCATTAGCAACTTTCAGT+GGG | - | chr4_1:74010416-74010435 | Msa0571370:CDS | 40.0% | |
| TGAATATCCACTACTTACGC+GGG | + | chr4_1:74010474-74010493 | None:intergenic | 40.0% | |
| GTGGATATTCAAAACTTGGC+TGG | - | chr4_1:74010483-74010502 | Msa0571370:CDS | 40.0% | |
| !! | AAAAAGGAAAGGAGTACCCT+AGG | + | chr4_1:74010658-74010677 | None:intergenic | 40.0% |
| !! | TTAGGGTTCTAGGTGGGTTT+CGG | + | chr4_1:74007098-74007117 | None:intergenic | 45.0% |
| !! | TTTGGGTTAGGGTTCTAGGT+GGG | + | chr4_1:74007104-74007123 | None:intergenic | 45.0% |
| ! | CGCCGTTTATGTTTGGGTTA+GGG | + | chr4_1:74007115-74007134 | None:intergenic | 45.0% |
| CCTAACCCAAACATAAACGG+CGG | - | chr4_1:74007113-74007132 | Msa0571370:three_prime_UTR | 45.0% | |
| !! | AAGAACCAAAAGCATCGTGC+TGG | - | chr4_1:74007275-74007294 | Msa0571370:intron | 45.0% |
| ! | TGTTCGGTTTGCAAAAGTGG+TGG | + | chr4_1:74007343-74007362 | None:intergenic | 45.0% |
| !! | ACCACTTTTGCAAACCGAAC+AGG | - | chr4_1:74007342-74007361 | Msa0571370:three_prime_UTR | 45.0% |
| ! | ACCTGTTCGGTTTGCAAAAG+TGG | + | chr4_1:74007346-74007365 | None:intergenic | 45.0% |
| CAGCAACAGAGATACCATGA+CGG | + | chr4_1:74007387-74007406 | None:intergenic | 45.0% | |
| GCCAATGCTGTTATTGAAGC+TGG | - | chr4_1:74007415-74007434 | Msa0571370:three_prime_UTR | 45.0% | |
| GAAGCTGGTGAAAAGCTTCA+TGG | - | chr4_1:74007430-74007449 | Msa0571370:three_prime_UTR | 45.0% | |
| TTCTGTTCCCGAAGTTATGG+AGG | - | chr4_1:74007471-74007490 | Msa0571370:three_prime_UTR | 45.0% | |
| CGAATCTCCTCCATAACTTC+GGG | + | chr4_1:74007481-74007500 | None:intergenic | 45.0% | |
| !! | TTGTTGATGGATTCAGGGGT+TGG | + | chr4_1:74007562-74007581 | None:intergenic | 45.0% |
| ACCCCTGAATCCATCAACAA+AGG | - | chr4_1:74007562-74007581 | Msa0571370:CDS | 45.0% | |
| !! | GCTTATGAGCTGGTTTGGAT+TGG | + | chr4_1:74008002-74008021 | None:intergenic | 45.0% |
| CAACTAACACCACATCCCAA+TGG | + | chr4_1:74008179-74008198 | None:intergenic | 45.0% | |
| !! | GTCAAGTTTGCTAGGGTTAC+TGG | - | chr4_1:74008198-74008217 | Msa0571370:intron | 45.0% |
| ! | ACTTTGGAGGCTCAGATTCA+CGG | - | chr4_1:74008273-74008292 | Msa0571370:intron | 45.0% |
| TCACGGAACAAAACATCTCC+GGG | - | chr4_1:74008290-74008309 | Msa0571370:CDS | 45.0% | |
| TTACTGTTTGCACAGGAGGT+GGG | + | chr4_1:74008320-74008339 | None:intergenic | 45.0% | |
| TTTACTGTTTGCACAGGAGG+TGG | + | chr4_1:74008321-74008340 | None:intergenic | 45.0% | |
| GCTTCCCACTCTTCCAAATT+AGG | + | chr4_1:74008393-74008412 | None:intergenic | 45.0% | |
| ! | TTTGGAAGAGTGGGAAGCAT+TGG | - | chr4_1:74008395-74008414 | Msa0571370:CDS | 45.0% |
| TTCAAGAATCCTTCCTCTGC+AGG | - | chr4_1:74008449-74008468 | Msa0571370:intron | 45.0% | |
| TTCAAACTCAAGTCCTGCAG+AGG | + | chr4_1:74008465-74008484 | None:intergenic | 45.0% | |
| GCATACTGCTGAAACTCTTC+CGG | - | chr4_1:74008527-74008546 | Msa0571370:intron | 45.0% | |
| TCATCACTCTCCGGAATTTC+CGG | + | chr4_1:74008549-74008568 | None:intergenic | 45.0% | |
| !! | GGACAAGTTGATGACAATGG+AGG | - | chr4_1:74008666-74008685 | Msa0571370:intron | 45.0% |
| !! | AACTCTGAAGCAGATGACTC+TGG | - | chr4_1:74008947-74008966 | Msa0571370:CDS | 45.0% |
| ! | AAGCAGATGACTCTGGAAGA+AGG | - | chr4_1:74008954-74008973 | Msa0571370:CDS | 45.0% |
| CTATCTTCAGGAGACAGACT+TGG | + | chr4_1:74009011-74009030 | None:intergenic | 45.0% | |
| ATGATGCCAGTGAGCAAAGT+TGG | - | chr4_1:74009141-74009160 | Msa0571370:CDS | 45.0% | |
| AAGCATCCAACTTTGCTCAC+TGG | + | chr4_1:74009150-74009169 | None:intergenic | 45.0% | |
| TCTACTGTGGCCTGTATAAC+TGG | - | chr4_1:74009185-74009204 | Msa0571370:CDS | 45.0% | |
| TCATGCCTGCTTCACTGTTA+CGG | - | chr4_1:74009544-74009563 | Msa0571370:CDS | 45.0% | |
| CTGTTACGGCTGAAATTGGA+AGG | - | chr4_1:74009558-74009577 | Msa0571370:CDS | 45.0% | |
| TGTCCAAAATGCGGAAATGG+CGG | - | chr4_1:74009587-74009606 | Msa0571370:CDS | 45.0% | |
| TAATGTAACTCGAGGTCGAC+GGG | + | chr4_1:74009666-74009685 | None:intergenic | 45.0% | |
| GTAATGTAACTCGAGGTCGA+CGG | + | chr4_1:74009667-74009686 | None:intergenic | 45.0% | |
| GAGTTACATTACGTGGCACA+AGG | - | chr4_1:74009675-74009694 | Msa0571370:CDS | 45.0% | |
| TCATTGCCTTTACCTCAAGG+TGG | - | chr4_1:74010089-74010108 | Msa0571370:intron | 45.0% | |
| GTGAAGATCAACTGCCTCAA+AGG | - | chr4_1:74010144-74010163 | Msa0571370:intron | 45.0% | |
| AAAGAACACCACACTCTCGT+GGG | + | chr4_1:74010248-74010267 | None:intergenic | 45.0% | |
| TAAAGAACACCACACTCTCG+TGG | + | chr4_1:74010249-74010268 | None:intergenic | 45.0% | |
| GTAGGACGACGACTTCTATA+TGG | - | chr4_1:74010333-74010352 | Msa0571370:intron | 45.0% | |
| CTTCAGCCACCACAATTCTA+AGG | - | chr4_1:74010366-74010385 | Msa0571370:intron | 45.0% | |
| GAGATCCCTTAGAATTGTGG+TGG | + | chr4_1:74010375-74010394 | None:intergenic | 45.0% | |
| AGTTGCTAATGCTCTCCTGA+CGG | + | chr4_1:74010410-74010429 | None:intergenic | 45.0% | |
| CGCGAGTAGTGATTGTCATT+TGG | + | chr4_1:74010451-74010470 | None:intergenic | 45.0% | |
| !! | TTTATTTATTAATTAATGTT+TGG | - | chr4_1:74007752-74007771 | Msa0571370:intron | 5.0% |
| !! | ATAATTAATAATAATAGATT+TGG | - | chr4_1:74009843-74009862 | Msa0571370:intron | 5.0% |
| TGGGTTTCGGAAGACAATGC+TGG | + | chr4_1:74007085-74007104 | None:intergenic | 50.0% | |
| !! | GTTTGGGTTAGGGTTCTAGG+TGG | + | chr4_1:74007105-74007124 | None:intergenic | 50.0% |
| ! | CCGCCGTTTATGTTTGGGTT+AGG | + | chr4_1:74007116-74007135 | None:intergenic | 50.0% |
| GTCTGCCGCCGTTTATGTTT+GGG | + | chr4_1:74007121-74007140 | None:intergenic | 50.0% | |
| ACAGACAGATCTTCCATCGC+AGG | - | chr4_1:74007242-74007261 | Msa0571370:intron | 50.0% | |
| CTTCCATCGCAGGTGAATCA+TGG | - | chr4_1:74007252-74007271 | Msa0571370:intron | 50.0% | |
| CTTCCATGATTCACCTGCGA+TGG | + | chr4_1:74007258-74007277 | None:intergenic | 50.0% | |
| ! | CTACTCCAGCACGATGCTTT+TGG | + | chr4_1:74007283-74007302 | None:intergenic | 50.0% |
| CTGGAGTAGCGTAGTGAAGA+AGG | - | chr4_1:74007294-74007313 | Msa0571370:intron | 50.0% | |
| GAGTAGCGTAGTGAAGAAGG+AGG | - | chr4_1:74007297-74007316 | Msa0571370:intron | 50.0% | |
| ! | AGTGGTGGTTGTTGTTGAGG+TGG | + | chr4_1:74007328-74007347 | None:intergenic | 50.0% |
| GAAGATGCTCGTAACCGTCA+TGG | - | chr4_1:74007370-74007389 | Msa0571370:three_prime_UTR | 50.0% | |
| TGTGAAGAGGTTGCCTGAGA+AGG | - | chr4_1:74008341-74008360 | Msa0571370:CDS | 50.0% | |
| !! | AGAGTGGGAAGCATTGGAAC+AGG | - | chr4_1:74008401-74008420 | Msa0571370:CDS | 50.0% |
| ! | AGCATTGGAACAGGAAACCG+AGG | - | chr4_1:74008410-74008429 | Msa0571370:CDS | 50.0% |
| AACTCAAGTCCTGCAGAGGA+AGG | + | chr4_1:74008461-74008480 | None:intergenic | 50.0% | |
| ATTCCGGAGAGTGATGAACG+TGG | - | chr4_1:74008552-74008571 | Msa0571370:intron | 50.0% | |
| ATGAACGTGGCGGTTCAATG+AGG | - | chr4_1:74008565-74008584 | Msa0571370:intron | 50.0% | |
| GAAGGGAAGATGGTTGCTGA+TGG | - | chr4_1:74008627-74008646 | Msa0571370:intron | 50.0% | |
| TGAGTACTACGACTGACAGC+AGG | + | chr4_1:74008702-74008721 | None:intergenic | 50.0% | |
| CTGTCAGTCGTAGTACTCAC+AGG | - | chr4_1:74008703-74008722 | Msa0571370:CDS | 50.0% | |
| ! | CATCACTTTGGTGCACATCC+AGG | + | chr4_1:74008848-74008867 | None:intergenic | 50.0% |
| CTGCTTCAGAGTTGCAGAGA+GGG | + | chr4_1:74008940-74008959 | None:intergenic | 50.0% | |
| TCTGCTTCAGAGTTGCAGAG+AGG | + | chr4_1:74008941-74008960 | None:intergenic | 50.0% | |
| CATCAGCAGCTTCACTTGAC+TGG | + | chr4_1:74009109-74009128 | None:intergenic | 50.0% | |
| TGGTGTATCTGTGATCCTCC+AGG | + | chr4_1:74009263-74009282 | None:intergenic | 50.0% | |
| CACAGATACACCAGTTGCAC+AGG | - | chr4_1:74009270-74009289 | Msa0571370:CDS | 50.0% | |
| TTCAGCCGTAACAGTGAAGC+AGG | + | chr4_1:74009552-74009571 | None:intergenic | 50.0% | |
| AGTGACAGCTACCTTCCTCA+AGG | + | chr4_1:74009615-74009634 | None:intergenic | 50.0% | |
| CGACCTCGAGTTACATTACG+TGG | - | chr4_1:74009668-74009687 | Msa0571370:CDS | 50.0% | |
| GTGCCACGTAATGTAACTCG+AGG | + | chr4_1:74009674-74009693 | None:intergenic | 50.0% | |
| TGCCTTTACCTCAAGGTGGA+AGG | - | chr4_1:74010093-74010112 | Msa0571370:intron | 50.0% | |
| GCCTTTACCTCAAGGTGGAA+GGG | - | chr4_1:74010094-74010113 | Msa0571370:intron | 50.0% | |
| TCCCTTCCACCTTGAGGTAA+AGG | + | chr4_1:74010098-74010117 | None:intergenic | 50.0% | |
| GGACGACGACTTCTATATGG+TGG | - | chr4_1:74010336-74010355 | Msa0571370:intron | 50.0% | |
| GTTGCTAATGCTCTCCTGAC+GGG | + | chr4_1:74010409-74010428 | None:intergenic | 50.0% | |
| GGTCTGCCGCCGTTTATGTT+TGG | + | chr4_1:74007122-74007141 | None:intergenic | 55.0% | |
| ! | GGTGGTTGTTGTTGAGGTGG+CGG | + | chr4_1:74007325-74007344 | None:intergenic | 55.0% |
| !! | CAGGGGTTGGTTCCATGGTT+TGG | + | chr4_1:74007549-74007568 | None:intergenic | 55.0% |
| !! | GGATTCAGGGGTTGGTTCCA+TGG | + | chr4_1:74007554-74007573 | None:intergenic | 55.0% |
| GTTGCCTGAGAAGGACATGC+CGG | - | chr4_1:74008350-74008369 | Msa0571370:CDS | 55.0% | |
| TTGCCTGAGAAGGACATGCC+GGG | - | chr4_1:74008351-74008370 | Msa0571370:CDS | 55.0% | |
| TGAGAAGGACATGCCGGGAT+GGG | - | chr4_1:74008356-74008375 | Msa0571370:CDS | 55.0% | |
| GGCACATTCAAACCCCATCC+CGG | + | chr4_1:74008372-74008391 | None:intergenic | 55.0% | |
| CCAGCAAGCGCAAACCCATT+TGG | + | chr4_1:74009238-74009257 | None:intergenic | 55.0% | |
| ! | CCAAATGGGTTTGCGCTTGC+TGG | - | chr4_1:74009235-74009254 | Msa0571370:CDS | 55.0% |
| ! | GTGCCGCCATTTCCGCATTT+TGG | + | chr4_1:74009593-74009612 | None:intergenic | 55.0% |
| AAATGGCGGCACCTTGAGGA+AGG | - | chr4_1:74009601-74009620 | Msa0571370:CDS | 55.0% | |
| ACTGCATCCCTTCCACCTTG+AGG | + | chr4_1:74010104-74010123 | None:intergenic | 55.0% | |
| GTTCGTTTCCCACGAGAGTG+TGG | - | chr4_1:74010237-74010256 | Msa0571370:intron | 55.0% | |
| CATCCCGGCATGTCCTTCTC+AGG | + | chr4_1:74008357-74008376 | None:intergenic | 60.0% | |
| CTGAGAAGGACATGCCGGGA+TGG | - | chr4_1:74008355-74008374 | Msa0571370:CDS | 60.0% | |
| GAGAAGGACATGCCGGGATG+GGG | - | chr4_1:74008357-74008376 | Msa0571370:CDS | 60.0% | |
| CCGCCACGTTCATCACTCTC+CGG | + | chr4_1:74008558-74008577 | None:intergenic | 60.0% | |
| CCGGAGAGTGATGAACGTGG+CGG | - | chr4_1:74008555-74008574 | Msa0571370:intron | 60.0% | |
| GCTAATGCTCTCCTGACGGG+AGG | + | chr4_1:74010406-74010425 | None:intergenic | 60.0% | |
| ! | GGTTTGCGCTTGCTGGCACC+TGG | - | chr4_1:74009242-74009261 | Msa0571370:CDS | 65.0% |
| ! | TTGCGCTTGCTGGCACCTGG+AGG | - | chr4_1:74009245-74009264 | Msa0571370:CDS | 65.0% |
| GCGGAAATGGCGGCACCTTG+AGG | - | chr4_1:74009597-74009616 | Msa0571370:CDS | 65.0% | |
| CTCCTTTCCAGCCTCCCGTC+AGG | - | chr4_1:74010392-74010411 | Msa0571370:intron | 65.0% | |
| CTCCTGACGGGAGGCTGGAA+AGG | + | chr4_1:74010397-74010416 | None:intergenic | 65.0% | |
| ATGCTCTCCTGACGGGAGGC+TGG | + | chr4_1:74010402-74010421 | None:intergenic | 65.0% | |
| ACTCGCGCCCGCGTAAGTAG+TGG | - | chr4_1:74010464-74010483 | Msa0571370:CDS | 65.0% | |
| !! | GCACAGGAGGTGGGCTGTCC+CGG | + | chr4_1:74008311-74008330 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 74007082 | 74010894 | 74007082 | ID=Msa0571370;Name=Msa0571370 |
| chr4_1 | mRNA | 74007082 | 74010894 | 74007082 | ID=Msa0571370-mRNA-1;Parent=Msa0571370;Name=Msa0571370-mRNA-1;_AED=0.07;_eAED=0.07;_QI=105|1|1|1|0.66|0.42|7|273|613 |
| chr4_1 | exon | 74007082 | 74007193 | 74007082 | ID=Msa0571370-mRNA-1:exon:25459;Parent=Msa0571370-mRNA-1 |
| chr4_1 | exon | 74007332 | 74007639 | 74007332 | ID=Msa0571370-mRNA-1:exon:25458;Parent=Msa0571370-mRNA-1 |
| chr4_1 | exon | 74007774 | 74007890 | 74007774 | ID=Msa0571370-mRNA-1:exon:25457;Parent=Msa0571370-mRNA-1 |
| chr4_1 | exon | 74008279 | 74008447 | 74008279 | ID=Msa0571370-mRNA-1:exon:25456;Parent=Msa0571370-mRNA-1 |
| chr4_1 | exon | 74008685 | 74009780 | 74008685 | ID=Msa0571370-mRNA-1:exon:25455;Parent=Msa0571370-mRNA-1 |
| chr4_1 | exon | 74010393 | 74010712 | 74010393 | ID=Msa0571370-mRNA-1:exon:25454;Parent=Msa0571370-mRNA-1 |
| chr4_1 | exon | 74010797 | 74010894 | 74010797 | ID=Msa0571370-mRNA-1:exon:25453;Parent=Msa0571370-mRNA-1 |
| chr4_1 | five_prime_UTR | 74010797 | 74010894 | 74010797 | ID=Msa0571370-mRNA-1:five_prime_utr;Parent=Msa0571370-mRNA-1 |
| chr4_1 | five_prime_UTR | 74010706 | 74010712 | 74010706 | ID=Msa0571370-mRNA-1:five_prime_utr;Parent=Msa0571370-mRNA-1 |
| chr4_1 | CDS | 74010393 | 74010705 | 74010393 | ID=Msa0571370-mRNA-1:cds;Parent=Msa0571370-mRNA-1 |
| chr4_1 | CDS | 74008685 | 74009780 | 74008685 | ID=Msa0571370-mRNA-1:cds;Parent=Msa0571370-mRNA-1 |
| chr4_1 | CDS | 74008279 | 74008447 | 74008279 | ID=Msa0571370-mRNA-1:cds;Parent=Msa0571370-mRNA-1 |
| chr4_1 | CDS | 74007774 | 74007890 | 74007774 | ID=Msa0571370-mRNA-1:cds;Parent=Msa0571370-mRNA-1 |
| chr4_1 | CDS | 74007493 | 74007639 | 74007493 | ID=Msa0571370-mRNA-1:cds;Parent=Msa0571370-mRNA-1 |
| chr4_1 | three_prime_UTR | 74007332 | 74007492 | 74007332 | ID=Msa0571370-mRNA-1:three_prime_utr;Parent=Msa0571370-mRNA-1 |
| chr4_1 | three_prime_UTR | 74007082 | 74007193 | 74007082 | ID=Msa0571370-mRNA-1:three_prime_utr;Parent=Msa0571370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
