AlfalfaGEDB | Msa0572340

M. sativa cultivar zhongmu-4 / Msa0572340

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0572340	Msa0946320	0.841923	3.539013e-58	-8.615850e-47

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0572340	MtrunA17_Chr7g0226401	46.377	69	34	2	1	67	42	109	4.40e-11	54.7

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 22 sgRNAs with CRISPR-Local

Find 23 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCTGGAGAGTTGGGTAG+TGG	0.474905	4_1:-75252692	Msa0572340:CDS
AACGGTGGAAGACAAAATCT+AGG	0.551146	4_1:-75252605	Msa0572340:CDS
AAGTGAATTGAGCCAACAGC+TGG	0.428530	4_1:-75252574	Msa0572340:intron
AGCCAACAGCTGGGTTGATG+AGG	0.568668	4_1:-75252564	Msa0572340:CDS
AGCTGGGTTGATGAGGAGAG+CGG	0.686144	4_1:-75252557	Msa0572340:CDS
AGGTCGTCGATGACGAGATT+GGG	0.488958	4_1:-75252529	Msa0572340:CDS
AGTGAATTGAGCCAACAGCT+GGG	0.637281	4_1:-75252573	Msa0572340:intron
CCAATGAAATCTGGAGAGTT+GGG	0.467398	4_1:-75252698	Msa0572340:CDS
CCCAACTCTCCAGATTTCAT+TGG	0.402631	4_1:+75252698	None:intergenic
CTCCTCATCAACCCAGCTGT+TGG	0.517985	4_1:+75252562	None:intergenic

Showing 1 to 10 of 22 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TAGATTCATGATCTACTCTC+GGG	+	chr4_1:75252491-75252510	None:intergenic	35.0%
GTAGATTCATGATCTACTCT+CGG	+	chr4_1:75252492-75252511	None:intergenic	35.0%
TTGTGAAGAGAGGAGGAAAA+TGG	+	chr4_1:75252519-75252538	None:intergenic	40.0%
AACGGTGGAAGACAAAATCT+AGG	-	chr4_1:75252537-75252556	Msa0572340:CDS	40.0%
TGGGTAAAGAAGTGAACGTA+AGG	-	chr4_1:75252632-75252651	Msa0572340:CDS	40.0%
AAATCTGGAGAGTTGGGTAG+TGG	-	chr4_1:75252450-75252469	Msa0572340:CDS	45.0%
AAGTGAATTGAGCCAACAGC+TGG	-	chr4_1:75252568-75252587	Msa0572340:intron	45.0%
AGTGAATTGAGCCAACAGCT+GGG	-	chr4_1:75252569-75252588	Msa0572340:intron	45.0%
TCTTCCACCGTTGTGAAGAG+AGG	+	chr4_1:75252529-75252548	None:intergenic	50.0%
TAGGTCGTCGATGACGAGAT+TGG	-	chr4_1:75252612-75252631	Msa0572340:CDS	50.0%

Showing 1 to 10 of 23 entries

Previous1 2 3Next

Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	75252447	75252717	75252447	ID=Msa0572340;Name=Msa0572340
chr4_1	mRNA	75252447	75252717	75252447	ID=Msa0572340-mRNA-1;Parent=Msa0572340;Name=Msa0572340-mRNA-1;_AED=0.53;_eAED=0.60;_QI=0\|0\|0\|1\|0\|0\|2\|0\|86
chr4_1	exon	75252595	75252717	75252595	ID=Msa0572340-mRNA-1:exon:26065;Parent=Msa0572340-mRNA-1
chr4_1	exon	75252447	75252584	75252447	ID=Msa0572340-mRNA-1:exon:26064;Parent=Msa0572340-mRNA-1
chr4_1	CDS	75252595	75252717	75252595	ID=Msa0572340-mRNA-1:cds;Parent=Msa0572340-mRNA-1
chr4_1	CDS	75252447	75252584	75252447	ID=Msa0572340-mRNA-1:cds;Parent=Msa0572340-mRNA-1

Gene Sequence	>Msa0572340 ATGAAATCTGGAGAGTTGGGTAGTGGAATATTTGGTATCATCCCGAGAGTAGATCATGAATCTACGTATCCATTTTCCTCCTCTCTTCACAACGGTGGAAGACAAAATCTAGGCACAACTCAACCAACAGCTGGGTTGATGAGGAGAGCGGTGCATAGGTCGTCGATGACGAGATTGGGTAAAGAAGTGAACGTAAGGTTTTGTGTTGTGTGGTTTTTGGTTGGCGATGATGGCAACATCATTATGTGTTTTACTTTTTAG
Protein sequence	>Msa0572340 MKSGELGSGIFGIIPRVDHESTYPFSSSLHNGGRQNLGTTQPTAGLMRRAVHRSSMTRLGKEVNVRFCVVWFLVGDDGNIIMCFTF*