Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0573370 | XP_039684568.1 | 97.307 | 557 | 14 | 1 | 1 | 557 | 1 | 556 | 0.0 | 1117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0573370 | sp|Q9FJT9|PQQL_ARATH | 71.199 | 559 | 129 | 4 | 1 | 557 | 1 | 529 | 0.0 | 823 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0573370 | A0A396GY53 | 97.307 | 557 | 14 | 1 | 1 | 557 | 1 | 556 | 0.0 | 1117 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0573370 | Msa0620430 | 0.815998 | 6.934232e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0573370 | MtrunA17_Chr8g0389421 | 97.307 | 557 | 14 | 1 | 1 | 557 | 1 | 556 | 0.0 | 1117 |
| Msa0573370 | MtrunA17_Chr5g0395291 | 32.558 | 215 | 132 | 3 | 42 | 253 | 195 | 399 | 1.07e-24 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0573370 | AT5G56730.1 | 74.240 | 559 | 140 | 3 | 1 | 557 | 1 | 557 | 0.0 | 871 |
| Msa0573370 | AT5G42390.2 | 31.797 | 217 | 134 | 3 | 42 | 254 | 198 | 404 | 1.19e-23 | 106 |
| Msa0573370 | AT5G42390.1 | 31.797 | 217 | 134 | 3 | 42 | 254 | 198 | 404 | 1.58e-23 | 106 |
Find 131 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGACTTCAAAACCAAATA+TGG | 0.182334 | 4_1:+76557826 | Msa0573370:CDS |
| CTTTGAACTCACCCCATATT+TGG | 0.221929 | 4_1:-76557839 | None:intergenic |
| AGAGATTGAATCTGCCTATT+TGG | 0.223259 | 4_1:+76557306 | Msa0573370:CDS |
| AGAAGCTGAACATGAGAAAT+AGG | 0.241964 | 4_1:-76557011 | None:intergenic |
| GTTATAATATTGGTCTTTAC+TGG | 0.244590 | 4_1:-76557052 | None:intergenic |
| GTTGCTAGGGTGCGGCTTCA+TGG | 0.261905 | 4_1:+76557238 | Msa0573370:CDS |
| TGACAGCCATATTGCATAAA+TGG | 0.280422 | 4_1:-76556485 | None:intergenic |
| GAAAGTATCGGAGCTGAATT+TGG | 0.281086 | 4_1:+76555621 | Msa0573370:CDS |
| TCACAATTTCTTCAGGAATA+TGG | 0.308219 | 4_1:-76557808 | None:intergenic |
| TCCCAACAACAGGTTCATTA+TGG | 0.325895 | 4_1:-76557469 | None:intergenic |
| TTTGAAGTCACAATTTCTTC+AGG | 0.328204 | 4_1:-76557815 | None:intergenic |
| CTCAGATATATCAGCATTAG+AGG | 0.345258 | 4_1:+76557631 | Msa0573370:intron |
| GAGTTGATAAAGGTTCATTT+TGG | 0.354052 | 4_1:+76556638 | Msa0573370:CDS |
| ATTGTTGTCTCAGGCGATTT+CGG | 0.356635 | 4_1:+76555716 | Msa0573370:CDS |
| ACATGATGAAGTTATAATAT+TGG | 0.369371 | 4_1:-76557062 | None:intergenic |
| CTAAATATTCTGAGAAATTA+CGG | 0.372204 | 4_1:+76557657 | Msa0573370:CDS |
| TCCACCTATTCCAACATTCC+AGG | 0.372222 | 4_1:+76556685 | Msa0573370:CDS |
| CCTCTGTTAACATTGATTCC+AGG | 0.373957 | 4_1:-76557108 | None:intergenic |
| ATCAAACACGGCAAATGTTC+GGG | 0.378987 | 4_1:-76557714 | None:intergenic |
| TTTGTTGAATCTGAAGCTGC+TGG | 0.382487 | 4_1:+76556740 | Msa0573370:CDS |
| GAGTGTAGTTGAGTTGATAA+AGG | 0.384364 | 4_1:+76556628 | Msa0573370:intron |
| ATGGTACCATTTATGCAATA+TGG | 0.389252 | 4_1:+76556479 | Msa0573370:CDS |
| AACAATTCCGGCTTGTCAAC+GGG | 0.391308 | 4_1:-76555699 | None:intergenic |
| AGCGGCTCTCATGCGTGGTT+TGG | 0.396887 | 4_1:-76555318 | None:intergenic |
| TACAGACTTCCTTGATGATC+AGG | 0.397550 | 4_1:+76558635 | Msa0573370:CDS |
| AAGGCATGTTGTGAAGGAAT+TGG | 0.398678 | 4_1:+76558548 | Msa0573370:intron |
| CTTGCACTCGCCGTCAGAGT+CGG | 0.407597 | 4_1:+76555341 | Msa0573370:CDS |
| CTCCATAATGAACCTGTTGT+TGG | 0.408200 | 4_1:+76557467 | Msa0573370:CDS |
| ACTGAACTTATTCTGTCAAA+TGG | 0.412439 | 4_1:+76558591 | Msa0573370:CDS |
| CATCAAACACGGCAAATGTT+CGG | 0.415336 | 4_1:-76557715 | None:intergenic |
| GTGACTTCAAAACCAAATAT+GGG | 0.421073 | 4_1:+76557827 | Msa0573370:CDS |
| TCCATAATGAACCTGTTGTT+GGG | 0.422638 | 4_1:+76557468 | Msa0573370:CDS |
| AACTTGATCTCGCTCCAAAT+AGG | 0.429517 | 4_1:-76557320 | None:intergenic |
| GGAGGCTGCAGGATGCTCAT+TGG | 0.435034 | 4_1:+76556226 | Msa0573370:CDS |
| ATCACTTTCTCGAGTCCAAT+TGG | 0.436300 | 4_1:-76556414 | None:intergenic |
| TGCTCATTGGACTCTGTTGA+TGG | 0.437075 | 4_1:+76556239 | Msa0573370:CDS |
| AGAGTGAGAGTGAAGAAGAA+TGG | 0.441914 | 4_1:+76555133 | Msa0573370:exon |
| ATCGCCTGAGACAACAATTC+CGG | 0.442458 | 4_1:-76555711 | None:intergenic |
| AAATGCCACGGGGAGGCTGC+AGG | 0.452143 | 4_1:+76556215 | Msa0573370:CDS |
| GTTGGAATAGGTGGAGGATC+AGG | 0.461797 | 4_1:-76556677 | None:intergenic |
| ACTTCATCATGTAGAGGAAA+AGG | 0.464090 | 4_1:+76557073 | Msa0573370:CDS |
| GAGCTGTCATGGAAGAGTAC+AGG | 0.466656 | 4_1:+76556184 | Msa0573370:CDS |
| CTGAACTTATTCTGTCAAAT+GGG | 0.468430 | 4_1:+76558592 | Msa0573370:CDS |
| TTGCACTCGCCGTCAGAGTC+GGG | 0.469577 | 4_1:+76555342 | Msa0573370:CDS |
| CAACCCGTCGGCGTCGACTT+CGG | 0.477435 | 4_1:+76555254 | Msa0573370:CDS |
| AAAAGGAACTCTTGAAGCCC+TGG | 0.477760 | 4_1:+76557090 | Msa0573370:CDS |
| GAAAGAAAGAGGAGCTGTCA+TGG | 0.477993 | 4_1:+76556173 | Msa0573370:CDS |
| AAGCCTTGTTTCCTTGAGAT+CGG | 0.478729 | 4_1:-76555182 | None:intergenic |
| CTCTGTTAACATTGATTCCA+GGG | 0.479060 | 4_1:-76557107 | None:intergenic |
| GAATTGGAATACTCAAACAT+TGG | 0.479944 | 4_1:+76558564 | Msa0573370:CDS |
| TGATACTGTTTATGAGCTGT+TGG | 0.485159 | 4_1:+76555674 | Msa0573370:CDS |
| GTTAAGTTTCTTGAAAGTAT+CGG | 0.489598 | 4_1:+76555609 | Msa0573370:CDS |
| CAAGCCGGAATTGTTGTCTC+AGG | 0.490415 | 4_1:+76555707 | Msa0573370:CDS |
| TTGTTGAATCTGAAGCTGCT+GGG | 0.492445 | 4_1:+76556741 | Msa0573370:CDS |
| CACGTGGTAGAAGAGTCTTT+TGG | 0.493588 | 4_1:-76557511 | None:intergenic |
| GAAGCTGAACATGAGAAATA+GGG | 0.494090 | 4_1:-76557010 | None:intergenic |
| CGGGTTGGTCAGAGAGGAGT+TGG | 0.494655 | 4_1:-76555238 | None:intergenic |
| AGTCAATCTTCTTGAGGAAG+AGG | 0.498368 | 4_1:+76557760 | Msa0573370:CDS |
| ATCGGAGTTGCTGCTTCTGA+TGG | 0.499100 | 4_1:-76555164 | None:intergenic |
| ACCTGGAATGTTGGAATAGG+TGG | 0.504632 | 4_1:-76556686 | None:intergenic |
| TCATACACAATCCCAACAAC+AGG | 0.504658 | 4_1:-76557479 | None:intergenic |
| CTAAATAAGGCATGTTGTGA+AGG | 0.505653 | 4_1:+76558542 | Msa0573370:intron |
| GTTGGTTCCCGTTGACAAGC+CGG | 0.509570 | 4_1:+76555692 | Msa0573370:CDS |
| TATGCTGAAAGGTTACCAAT+TGG | 0.511296 | 4_1:+76556399 | Msa0573370:CDS |
| GGCAAATGTTCGGGGCTCCA+TGG | 0.525394 | 4_1:-76557705 | None:intergenic |
| CATTGGACTCTGTTGATGGA+AGG | 0.534418 | 4_1:+76556243 | Msa0573370:CDS |
| CAACAATTCCGGCTTGTCAA+CGG | 0.535577 | 4_1:-76555700 | None:intergenic |
| GGTCATCATGTGATGGAACC+TGG | 0.536900 | 4_1:-76556703 | None:intergenic |
| GGAACCTGGAATGTTGGAAT+AGG | 0.537128 | 4_1:-76556689 | None:intergenic |
| AGACACAGAGTGGGAAGTGT+TGG | 0.538609 | 4_1:+76555101 | Msa0573370:five_prime_UTR |
| TCTGTTGATGGAAGGTTCAA+AGG | 0.539469 | 4_1:+76556251 | Msa0573370:CDS |
| TCGAGTATCGAAAGATGACT+TGG | 0.542562 | 4_1:+76556149 | Msa0573370:CDS |
| CGAAGTCGACGCCGACGGGT+TGG | 0.542868 | 4_1:-76555253 | None:intergenic |
| TAAGAAAGTCAATCTTCTTG+AGG | 0.547713 | 4_1:+76557754 | Msa0573370:CDS |
| AGCTGTCATGGAAGAGTACA+GGG | 0.550451 | 4_1:+76556185 | Msa0573370:CDS |
| ATCTCTGGTTTAATGCATAG+AGG | 0.550760 | 4_1:-76556958 | None:intergenic |
| AGAGGGTAAAATTTCTTCGT+GGG | 0.551146 | 4_1:+76557778 | Msa0573370:CDS |
| AAGCAGCAACTCCGATCTCA+AGG | 0.551701 | 4_1:+76555171 | Msa0573370:CDS |
| AAATACTAACCCGACTCTGA+CGG | 0.552340 | 4_1:-76555351 | None:intergenic |
| TAATATTGGTCTTTACTGGA+CGG | 0.553231 | 4_1:-76557048 | None:intergenic |
| GTGCCGAAGTCGACGCCGAC+GGG | 0.554379 | 4_1:-76555257 | None:intergenic |
| ATAGGTGGAGGATCAGGTGC+TGG | 0.554537 | 4_1:-76556671 | None:intergenic |
| CCTCACGGTCTCAGGAGAAA+CGG | 0.555379 | 4_1:-76556442 | None:intergenic |
| TGGAAACAAGTTTCAATGAT+CGG | 0.560280 | 4_1:-76555205 | None:intergenic |
| TGTGATGGAACCTGGAATGT+TGG | 0.561702 | 4_1:-76556695 | None:intergenic |
| TTGGACTCGAGAAAGTGATT+CGG | 0.562710 | 4_1:+76556418 | Msa0573370:CDS |
| GAATCAAAACCTGATCATCA+AGG | 0.564712 | 4_1:-76558644 | None:intergenic |
| AAGAGGGTAAAATTTCTTCG+TGG | 0.569335 | 4_1:+76557777 | Msa0573370:CDS |
| TGTTGAATCTGAAGCTGCTG+GGG | 0.571772 | 4_1:+76556742 | Msa0573370:CDS |
| ATTGGTTGCAGTATGCTGAA+AGG | 0.572229 | 4_1:+76556388 | Msa0573370:intron |
| AATAGGGTGGATCCTTCCTA+CGG | 0.573344 | 4_1:-76556994 | None:intergenic |
| GAGGAGTTGGTTCATGTCGG+TGG | 0.577148 | 4_1:-76555225 | None:intergenic |
| GATGACTTGGAGAAAGAAAG+AGG | 0.577729 | 4_1:+76556162 | Msa0573370:CDS |
| TGGAATGTTGGAATAGGTGG+AGG | 0.579922 | 4_1:-76556683 | None:intergenic |
| CACGGACTATAGATACTTCA+CGG | 0.580769 | 4_1:-76557270 | None:intergenic |
| AGTGCCGAAGTCGACGCCGA+CGG | 0.584965 | 4_1:-76555258 | None:intergenic |
| TGCAGCGAACGTAGTAGCGA+AGG | 0.586529 | 4_1:-76555292 | None:intergenic |
| TTATTCTGTCAAATGGGATG+CGG | 0.588007 | 4_1:+76558598 | Msa0573370:CDS |
| ATATTCATCTCTCAAGCTCG+TGG | 0.588260 | 4_1:-76557347 | None:intergenic |
| AATATGGCTGTCATAGCAGT+TGG | 0.589918 | 4_1:+76556495 | Msa0573370:CDS |
| ACTCCGATCTCAAGGAAACA+AGG | 0.593051 | 4_1:+76555179 | Msa0573370:CDS |
| GAGTGGGAAGTGTTGGACTC+TGG | 0.593310 | 4_1:+76555108 | Msa0573370:five_prime_UTR |
| TTCCATCACATGATGACCCA+CGG | 0.596134 | 4_1:+76556708 | Msa0573370:CDS |
| CAGGGGAAGCAGAAATGCCA+CGG | 0.596363 | 4_1:+76556203 | Msa0573370:CDS |
| GTCAATCTTCTTGAGGAAGA+GGG | 0.598448 | 4_1:+76557761 | Msa0573370:CDS |
| AGGGGAAGCAGAAATGCCAC+GGG | 0.599954 | 4_1:+76556204 | Msa0573370:CDS |
| AACCGTGGGTCATCATGTGA+TGG | 0.600868 | 4_1:-76556710 | None:intergenic |
| GACTTCGGCACTCTCGATAA+CGG | 0.603537 | 4_1:+76555269 | Msa0573370:CDS |
| GAAGCAGAAATGCCACGGGG+AGG | 0.604701 | 4_1:+76556208 | Msa0573370:CDS |
| CGCCGACGGGTTGGTCAGAG+AGG | 0.612082 | 4_1:-76555244 | None:intergenic |
| ATAGGGTGGATCCTTCCTAC+GGG | 0.612230 | 4_1:-76556993 | None:intergenic |
| ATTATAACTTCATCATGTAG+AGG | 0.615662 | 4_1:+76557067 | Msa0573370:CDS |
| AGAGAGGAGTTGGTTCATGT+CGG | 0.618402 | 4_1:-76555228 | None:intergenic |
| GCAAGAGCGGCTCTCATGCG+TGG | 0.619075 | 4_1:-76555323 | None:intergenic |
| TTTAGCAGAATTCAGTTCGG+AGG | 0.625569 | 4_1:+76555740 | Msa0573370:CDS |
| TCTGACGGCGAGTGCAAGAG+CGG | 0.629378 | 4_1:-76555336 | None:intergenic |
| TCTCTGACATCAGCAGCGCA+CGG | 0.638213 | 4_1:-76557288 | None:intergenic |
| TAGCTGTGTCATAAAGACCA+TGG | 0.640875 | 4_1:+76557688 | Msa0573370:CDS |
| TGACTTCAAAACCAAATATG+GGG | 0.645184 | 4_1:+76557828 | Msa0573370:CDS |
| GCTGAACATGAGAAATAGGG+TGG | 0.647160 | 4_1:-76557007 | None:intergenic |
| CAACAAAACAAGAAAACCGT+GGG | 0.648380 | 4_1:-76556724 | None:intergenic |
| GTTTAATGCATAGAGGAACA+TGG | 0.657057 | 4_1:-76556951 | None:intergenic |
| AGCATCCTGCAGCCTCCCCG+TGG | 0.657528 | 4_1:-76556220 | None:intergenic |
| CTTGAAGAAGAAGATGAACG+TGG | 0.660905 | 4_1:+76555522 | Msa0573370:CDS |
| TCAAACACGGCAAATGTTCG+GGG | 0.671594 | 4_1:-76557713 | None:intergenic |
| TCAACAAAACAAGAAAACCG+TGG | 0.688709 | 4_1:-76556725 | None:intergenic |
| CTCCTCTCTGACCAACCCGT+CGG | 0.695070 | 4_1:+76555242 | Msa0573370:CDS |
| CCTGGAATCAATGTTAACAG+AGG | 0.702536 | 4_1:+76557108 | Msa0573370:CDS |
| CCGTTTCTCCTGAGACCGTG+AGG | 0.706500 | 4_1:+76556442 | Msa0573370:CDS |
| GCTGTCATGGAAGAGTACAG+GGG | 0.722316 | 4_1:+76556186 | Msa0573370:CDS |
| GGGGAAGCAGAAATGCCACG+GGG | 0.778748 | 4_1:+76556205 | Msa0573370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTTAAACTATATTCATAT+AGG | - | chr4_1:76555929-76555948 | None:intergenic | 15.0% |
| !! | AAAAAGAACATAACATAATT+TGG | - | chr4_1:76556031-76556050 | None:intergenic | 15.0% |
| !!! | AAATTATGTTATGTTCTTTT+TGG | + | chr4_1:76556030-76556049 | Msa0573370:intron | 15.0% |
| !!! | ATTTAAGACAGTTATATTTT+AGG | + | chr4_1:76557216-76557235 | Msa0573370:intron | 15.0% |
| !!! | TTTCTTTGTTTACATTAAAA+TGG | + | chr4_1:76557386-76557405 | Msa0573370:intron | 15.0% |
| !! | ATATATCAGTTATTAAACTA+TGG | + | chr4_1:76558444-76558463 | Msa0573370:intron | 15.0% |
| !! | TATATCAGTTATTAAACTAT+GGG | + | chr4_1:76558445-76558464 | Msa0573370:intron | 15.0% |
| !! | ACATGATGAAGTTATAATAT+TGG | - | chr4_1:76557065-76557084 | None:intergenic | 20.0% |
| !! | AAAAAGAGAAGAAAAAAATG+AGG | - | chr4_1:76557158-76557177 | None:intergenic | 20.0% |
| !! | CTTAAATCTTGAAAGAAAAA+AGG | - | chr4_1:76557203-76557222 | None:intergenic | 20.0% |
| !!! | CTAAATATTCTGAGAAATTA+CGG | + | chr4_1:76557657-76557676 | Msa0573370:CDS | 20.0% |
| !!! | ATTTTTTAGATCATCAAACA+CGG | - | chr4_1:76557729-76557748 | None:intergenic | 20.0% |
| !! | TATATTCATGTAATCATTGT+TGG | + | chr4_1:76558066-76558085 | Msa0573370:intron | 20.0% |
| !! | AATTCATGTAGTGAAAATAA+AGG | + | chr4_1:76558250-76558269 | Msa0573370:intron | 20.0% |
| !!! | TGGATTTTATATGTAATGAA+TGG | + | chr4_1:76558417-76558436 | Msa0573370:intron | 20.0% |
| !! | TGGAAGAAAATTATCTAATT+AGG | - | chr4_1:76558479-76558498 | None:intergenic | 20.0% |
| !!! | AATCTCATTTTTCCTAAATA+AGG | + | chr4_1:76558529-76558548 | Msa0573370:intron | 20.0% |
| !! | GTTAAGTTTCTTGAAAGTAT+CGG | + | chr4_1:76555609-76555628 | Msa0573370:CDS | 25.0% |
| ! | ACTTATAGATATGTCATAAC+CGG | - | chr4_1:76555850-76555869 | None:intergenic | 25.0% |
| ! | GTTATGACATATCTATAAGT+TGG | + | chr4_1:76555850-76555869 | Msa0573370:intron | 25.0% |
| ! | TTAGTCATGTTAAGATAAGA+TGG | + | chr4_1:76556299-76556318 | Msa0573370:intron | 25.0% |
| !!! | AAGATAAGATGGTTTTGTAT+TGG | + | chr4_1:76556310-76556329 | Msa0573370:intron | 25.0% |
| !!! | GTGATTTTTGGGAATTATAT+GGG | + | chr4_1:76556346-76556365 | Msa0573370:intron | 25.0% |
| !! | TGATGCATAAAGTGTTTAAT+TGG | + | chr4_1:76556370-76556389 | Msa0573370:intron | 25.0% |
| !! | CTTATCTTCTTTTTATGCTA+TGG | + | chr4_1:76556550-76556569 | Msa0573370:intron | 25.0% |
| !! | AGTAACGAATCATTAACTTT+TGG | + | chr4_1:76556771-76556790 | Msa0573370:intron | 25.0% |
| !! | ATTAACTTTTGGCAATTTAC+CGG | + | chr4_1:76556782-76556801 | Msa0573370:intron | 25.0% |
| ! | TGGAAACTAACATATTACTT+TGG | + | chr4_1:76556833-76556852 | Msa0573370:intron | 25.0% |
| ! | GGAAACTAACATATTACTTT+GGG | + | chr4_1:76556834-76556853 | Msa0573370:intron | 25.0% |
| !!! | GGGATATTTTAAAAAATCTC+TGG | - | chr4_1:76556976-76556995 | None:intergenic | 25.0% |
| !!! | GATTTTTTAAAATATCCCGT+AGG | + | chr4_1:76556978-76556997 | Msa0573370:CDS | 25.0% |
| !!! | GTTATAATATTGGTCTTTAC+TGG | - | chr4_1:76557055-76557074 | None:intergenic | 25.0% |
| ! | ATTATAACTTCATCATGTAG+AGG | + | chr4_1:76557067-76557086 | Msa0573370:CDS | 25.0% |
| ! | TTGAAAGAAAAAAGGAGAAA+AGG | - | chr4_1:76557195-76557214 | None:intergenic | 25.0% |
| !!! | AGTTATATTTTAGGTTGCTA+GGG | + | chr4_1:76557225-76557244 | Msa0573370:intron | 25.0% |
| !! | TAACAAACTGTGCATTATTT+TGG | + | chr4_1:76557413-76557432 | Msa0573370:intron | 25.0% |
| !!! | TAGTTCTGATATCAAATTTC+TGG | + | chr4_1:76557564-76557583 | Msa0573370:intron | 25.0% |
| !! | ACTATGGATGATTTTATATG+AGG | - | chr4_1:76558030-76558049 | None:intergenic | 25.0% |
| ! | TTACATGAATATAAGCATGT+GGG | - | chr4_1:76558059-76558078 | None:intergenic | 25.0% |
| ! | ATTACATGAATATAAGCATG+TGG | - | chr4_1:76558060-76558079 | None:intergenic | 25.0% |
| ! | TGATAAGCATAAAACTTTAG+TGG | + | chr4_1:76558200-76558219 | Msa0573370:intron | 25.0% |
| ! | ATAAAGGAAATTTCCTTACT+TGG | + | chr4_1:76558266-76558285 | Msa0573370:intron | 25.0% |
| !! | ATAAACAATTGGTTCCTATA+GGG | - | chr4_1:76558296-76558315 | None:intergenic | 25.0% |
| !! | TAGCTAAAAGCATAAACAAT+TGG | - | chr4_1:76558307-76558326 | None:intergenic | 25.0% |
| !! | TTTTCATTTACTTTGCCATT+AGG | + | chr4_1:76558327-76558346 | Msa0573370:intron | 25.0% |
| ! | ATTTATATGTTTAAGCAGCT+TGG | + | chr4_1:76558397-76558416 | Msa0573370:intron | 25.0% |
| ! | GAATGTTAATACCTAAACAT+AGG | - | chr4_1:76558508-76558527 | None:intergenic | 25.0% |
| TGGAAACAAGTTTCAATGAT+CGG | - | chr4_1:76555208-76555227 | None:intergenic | 30.0% | |
| GCAATCAATAATTTCGATTG+AGG | - | chr4_1:76555478-76555497 | None:intergenic | 30.0% | |
| TTCAAAGAGCTTATGAATAC+CGG | + | chr4_1:76555828-76555847 | Msa0573370:intron | 30.0% | |
| ! | TAGCAGAAAGAATTGGTTTA+AGG | - | chr4_1:76556279-76556298 | None:intergenic | 30.0% |
| TGACTAATAGCAGAAAGAAT+TGG | - | chr4_1:76556286-76556305 | None:intergenic | 30.0% | |
| !!! | ATAAGATGGTTTTGTATTGG+AGG | + | chr4_1:76556313-76556332 | Msa0573370:intron | 30.0% |
| !! | GGTGATTTTTGGGAATTATA+TGG | + | chr4_1:76556345-76556364 | Msa0573370:intron | 30.0% |
| TTTCTTGTAAAAATGCCTCA+CGG | - | chr4_1:76556460-76556479 | None:intergenic | 30.0% | |
| !! | TGAGGCATTTTTACAAGAAA+TGG | + | chr4_1:76556460-76556479 | Msa0573370:CDS | 30.0% |
| ATGGTACCATTTATGCAATA+TGG | + | chr4_1:76556479-76556498 | Msa0573370:CDS | 30.0% | |
| !! | TACACTCTGAAATTGTACAA+GGG | - | chr4_1:76556615-76556634 | None:intergenic | 30.0% |
| !!! | GAGTTGATAAAGGTTCATTT+TGG | + | chr4_1:76556638-76556657 | Msa0573370:CDS | 30.0% |
| ! | TTAACTTTTGGCAATTTACC+GGG | + | chr4_1:76556783-76556802 | Msa0573370:intron | 30.0% |
| !!! | TTTTAAAATATCCCGTAGGA+AGG | + | chr4_1:76556982-76557001 | Msa0573370:CDS | 30.0% |
| !! | TAATATTGGTCTTTACTGGA+CGG | - | chr4_1:76557051-76557070 | None:intergenic | 30.0% |
| !!! | CAGTTATATTTTAGGTTGCT+AGG | + | chr4_1:76557224-76557243 | Msa0573370:intron | 30.0% |
| TCTAATGCTGATATATCTGA+GGG | - | chr4_1:76557632-76557651 | None:intergenic | 30.0% | |
| TAAGAAAGTCAATCTTCTTG+AGG | + | chr4_1:76557754-76557773 | Msa0573370:CDS | 30.0% | |
| TCACAATTTCTTCAGGAATA+TGG | - | chr4_1:76557811-76557830 | None:intergenic | 30.0% | |
| ! | TTTGAAGTCACAATTTCTTC+AGG | - | chr4_1:76557818-76557837 | None:intergenic | 30.0% |
| TGTGACTTCAAAACCAAATA+TGG | + | chr4_1:76557826-76557845 | Msa0573370:CDS | 30.0% | |
| GTGACTTCAAAACCAAATAT+GGG | + | chr4_1:76557827-76557846 | Msa0573370:CDS | 30.0% | |
| TGACTTCAAAACCAAATATG+GGG | + | chr4_1:76557828-76557847 | Msa0573370:CDS | 30.0% | |
| GTAATGTACAAGATAGAGAA+AGG | - | chr4_1:76557872-76557891 | None:intergenic | 30.0% | |
| TTTACTCTCTGATTCTGATA+TGG | + | chr4_1:76557915-76557934 | Msa0573370:intron | 30.0% | |
| TTACTCTCTGATTCTGATAT+GGG | + | chr4_1:76557916-76557935 | Msa0573370:intron | 30.0% | |
| GTGATATACAAGATAGAGAA+AGG | - | chr4_1:76557961-76557980 | None:intergenic | 30.0% | |
| CACTATTAAAATGACCTCAT+GGG | - | chr4_1:76558182-76558201 | None:intergenic | 30.0% | |
| TCACTATTAAAATGACCTCA+TGG | - | chr4_1:76558183-76558202 | None:intergenic | 30.0% | |
| ! | CATAAACAATTGGTTCCTAT+AGG | - | chr4_1:76558297-76558316 | None:intergenic | 30.0% |
| TTTAATGAAACACAGCCTAA+TGG | - | chr4_1:76558345-76558364 | None:intergenic | 30.0% | |
| CTGCTTAAACATATAAATGC+TGG | - | chr4_1:76558395-76558414 | None:intergenic | 30.0% | |
| TTCCAGTAAAACCTATGTTT+AGG | + | chr4_1:76558494-76558513 | Msa0573370:intron | 30.0% | |
| ! | TACCTAAACATAGGTTTTAC+TGG | - | chr4_1:76558499-76558518 | None:intergenic | 30.0% |
| GAATTGGAATACTCAAACAT+TGG | + | chr4_1:76558564-76558583 | Msa0573370:CDS | 30.0% | |
| ACTGAACTTATTCTGTCAAA+TGG | + | chr4_1:76558591-76558610 | Msa0573370:CDS | 30.0% | |
| CTGAACTTATTCTGTCAAAT+GGG | + | chr4_1:76558592-76558611 | Msa0573370:CDS | 30.0% | |
| ! | AAAAAATCTGAGACACAGAG+TGG | + | chr4_1:76555091-76555110 | Msa0573370:five_prime_UTR | 35.0% |
| ! | AAAAATCTGAGACACAGAGT+GGG | + | chr4_1:76555092-76555111 | Msa0573370:five_prime_UTR | 35.0% |
| TGATACTGTTTATGAGCTGT+TGG | + | chr4_1:76555674-76555693 | Msa0573370:CDS | 35.0% | |
| !! | GGTTTTAGCAGAATTCAGTT+CGG | + | chr4_1:76555737-76555756 | Msa0573370:CDS | 35.0% |
| ! | AATTTGGCGAAGTTGTTGTT+AGG | - | chr4_1:76556015-76556034 | None:intergenic | 35.0% |
| ! | GTTACGAAGAGGTGATTTTT+GGG | + | chr4_1:76556335-76556354 | Msa0573370:intron | 35.0% |
| TATGCTGAAAGGTTACCAAT+TGG | + | chr4_1:76556399-76556418 | Msa0573370:CDS | 35.0% | |
| TGACAGCCATATTGCATAAA+TGG | - | chr4_1:76556488-76556507 | None:intergenic | 35.0% | |
| ! | TATGCTATGGTTGTGTTGTT+TGG | + | chr4_1:76556563-76556582 | Msa0573370:intron | 35.0% |
| !! | CTACACTCTGAAATTGTACA+AGG | - | chr4_1:76556616-76556635 | None:intergenic | 35.0% |
| !! | GAGTGTAGTTGAGTTGATAA+AGG | + | chr4_1:76556628-76556647 | Msa0573370:intron | 35.0% |
| CAACAAAACAAGAAAACCGT+GGG | - | chr4_1:76556727-76556746 | None:intergenic | 35.0% | |
| TCAACAAAACAAGAAAACCG+TGG | - | chr4_1:76556728-76556747 | None:intergenic | 35.0% | |
| ! | TAACTTTTGGCAATTTACCG+GGG | + | chr4_1:76556784-76556803 | Msa0573370:intron | 35.0% |
| ACTAGTAATGTTGTCTTGCT+TGG | + | chr4_1:76556813-76556832 | Msa0573370:intron | 35.0% | |
| CATAACTGCAGACTGTTATT+GGG | - | chr4_1:76556864-76556883 | None:intergenic | 35.0% | |
| TCATAACTGCAGACTGTTAT+TGG | - | chr4_1:76556865-76556884 | None:intergenic | 35.0% | |
| !! | ACTGTTTTAAGCTCATTCGT+TGG | - | chr4_1:76556902-76556921 | None:intergenic | 35.0% |
| GTTTAATGCATAGAGGAACA+TGG | - | chr4_1:76556954-76556973 | None:intergenic | 35.0% | |
| ! | ATCTCTGGTTTAATGCATAG+AGG | - | chr4_1:76556961-76556980 | None:intergenic | 35.0% |
| GAAGCTGAACATGAGAAATA+GGG | - | chr4_1:76557013-76557032 | None:intergenic | 35.0% | |
| AGAAGCTGAACATGAGAAAT+AGG | - | chr4_1:76557014-76557033 | None:intergenic | 35.0% | |
| ACTTCATCATGTAGAGGAAA+AGG | + | chr4_1:76557073-76557092 | Msa0573370:CDS | 35.0% | |
| !! | CTCTGTTAACATTGATTCCA+GGG | - | chr4_1:76557110-76557129 | None:intergenic | 35.0% |
| AGAGATTGAATCTGCCTATT+TGG | + | chr4_1:76557306-76557325 | Msa0573370:CDS | 35.0% | |
| TCCATAATGAACCTGTTGTT+GGG | + | chr4_1:76557468-76557487 | Msa0573370:CDS | 35.0% | |
| ACATGATATATCAACTCACG+TGG | - | chr4_1:76557530-76557549 | None:intergenic | 35.0% | |
| CTAATGCTGATATATCTGAG+GGG | - | chr4_1:76557631-76557650 | None:intergenic | 35.0% | |
| CTCTAATGCTGATATATCTG+AGG | - | chr4_1:76557633-76557652 | None:intergenic | 35.0% | |
| CTCAGATATATCAGCATTAG+AGG | + | chr4_1:76557631-76557650 | Msa0573370:intron | 35.0% | |
| AAGAGGGTAAAATTTCTTCG+TGG | + | chr4_1:76557777-76557796 | Msa0573370:CDS | 35.0% | |
| AGAGGGTAAAATTTCTTCGT+GGG | + | chr4_1:76557778-76557797 | Msa0573370:CDS | 35.0% | |
| AAATATGGGGTGAGTTCAAA+GGG | + | chr4_1:76557841-76557860 | Msa0573370:intron | 35.0% | |
| TACTCTCTGATTCTGATATG+GGG | + | chr4_1:76557917-76557936 | Msa0573370:intron | 35.0% | |
| AAAAACAGGACGAAAATCTC+AGG | - | chr4_1:76558120-76558139 | None:intergenic | 35.0% | |
| TGTTAGCTCATAGGAAAAAC+AGG | - | chr4_1:76558134-76558153 | None:intergenic | 35.0% | |
| !! | TTTTGATTGTTCTCAGCAGT+AGG | + | chr4_1:76558366-76558385 | Msa0573370:intron | 35.0% |
| !! | CTTCACAACATGCCTTATTT+AGG | - | chr4_1:76558544-76558563 | None:intergenic | 35.0% |
| CTAAATAAGGCATGTTGTGA+AGG | + | chr4_1:76558542-76558561 | Msa0573370:intron | 35.0% | |
| TTATTCTGTCAAATGGGATG+CGG | + | chr4_1:76558598-76558617 | Msa0573370:CDS | 35.0% | |
| GAATCAAAACCTGATCATCA+AGG | - | chr4_1:76558647-76558666 | None:intergenic | 35.0% | |
| !!! | GATCAGGTTTTGATTCTTCT+AGG | + | chr4_1:76558651-76558670 | Msa0573370:CDS | 35.0% |
| AGAGTGAGAGTGAAGAAGAA+TGG | + | chr4_1:76555133-76555152 | Msa0573370:exon | 40.0% | |
| !! | AAGCCTTGTTTCCTTGAGAT+CGG | - | chr4_1:76555185-76555204 | None:intergenic | 40.0% |
| AAATACTAACCCGACTCTGA+CGG | - | chr4_1:76555354-76555373 | None:intergenic | 40.0% | |
| CTTGAAGAAGAAGATGAACG+TGG | + | chr4_1:76555522-76555541 | Msa0573370:CDS | 40.0% | |
| !! | GAAAGTATCGGAGCTGAATT+TGG | + | chr4_1:76555621-76555640 | Msa0573370:CDS | 40.0% |
| ATTGTTGTCTCAGGCGATTT+CGG | + | chr4_1:76555716-76555735 | Msa0573370:CDS | 40.0% | |
| TTTAGCAGAATTCAGTTCGG+AGG | + | chr4_1:76555740-76555759 | Msa0573370:CDS | 40.0% | |
| ! | AGAATTCAGTTCGGAGGTAT+TGG | + | chr4_1:76555746-76555765 | Msa0573370:intron | 40.0% |
| !! | TCGAGTATCGAAAGATGACT+TGG | + | chr4_1:76556149-76556168 | Msa0573370:CDS | 40.0% |
| ! | GATGACTTGGAGAAAGAAAG+AGG | + | chr4_1:76556162-76556181 | Msa0573370:CDS | 40.0% |
| ! | TCTGTTGATGGAAGGTTCAA+AGG | + | chr4_1:76556251-76556270 | Msa0573370:CDS | 40.0% |
| TTGTATTGGAGGTTACGAAG+AGG | + | chr4_1:76556324-76556343 | Msa0573370:intron | 40.0% | |
| ! | GGTTACGAAGAGGTGATTTT+TGG | + | chr4_1:76556334-76556353 | Msa0573370:intron | 40.0% |
| ATTGGTTGCAGTATGCTGAA+AGG | + | chr4_1:76556388-76556407 | Msa0573370:intron | 40.0% | |
| ATCACTTTCTCGAGTCCAAT+TGG | - | chr4_1:76556417-76556436 | None:intergenic | 40.0% | |
| TTGGACTCGAGAAAGTGATT+CGG | + | chr4_1:76556418-76556437 | Msa0573370:CDS | 40.0% | |
| AATATGGCTGTCATAGCAGT+TGG | + | chr4_1:76556495-76556514 | Msa0573370:CDS | 40.0% | |
| ! | TGGAGATTTTTCTGACACAC+AGG | + | chr4_1:76556515-76556534 | Msa0573370:CDS | 40.0% |
| ! | TTTGTTGAATCTGAAGCTGC+TGG | + | chr4_1:76556740-76556759 | Msa0573370:CDS | 40.0% |
| ! | TTGTTGAATCTGAAGCTGCT+GGG | + | chr4_1:76556741-76556760 | Msa0573370:CDS | 40.0% |
| ! | AACTTTTGGCAATTTACCGG+GGG | + | chr4_1:76556785-76556804 | Msa0573370:intron | 40.0% |
| ACATTACTAGTGAAAACCCC+CGG | - | chr4_1:76556804-76556823 | None:intergenic | 40.0% | |
| !! | CCTCTGTTAACATTGATTCC+AGG | - | chr4_1:76557111-76557130 | None:intergenic | 40.0% |
| CCTGGAATCAATGTTAACAG+AGG | + | chr4_1:76557108-76557127 | Msa0573370:CDS | 40.0% | |
| AATGAGGCTTCTCAGATCAA+TGG | - | chr4_1:76557142-76557161 | None:intergenic | 40.0% | |
| !!! | TATTTTAGGTTGCTAGGGTG+CGG | + | chr4_1:76557230-76557249 | Msa0573370:intron | 40.0% |
| ! | CACGGACTATAGATACTTCA+CGG | - | chr4_1:76557273-76557292 | None:intergenic | 40.0% |
| AACTTGATCTCGCTCCAAAT+AGG | - | chr4_1:76557323-76557342 | None:intergenic | 40.0% | |
| ATATTCATCTCTCAAGCTCG+TGG | - | chr4_1:76557350-76557369 | None:intergenic | 40.0% | |
| CTCCATAATGAACCTGTTGT+TGG | + | chr4_1:76557467-76557486 | Msa0573370:CDS | 40.0% | |
| TCCCAACAACAGGTTCATTA+TGG | - | chr4_1:76557472-76557491 | None:intergenic | 40.0% | |
| TCATACACAATCCCAACAAC+AGG | - | chr4_1:76557482-76557501 | None:intergenic | 40.0% | |
| TAGCTGTGTCATAAAGACCA+TGG | + | chr4_1:76557688-76557707 | Msa0573370:CDS | 40.0% | |
| ATCAAACACGGCAAATGTTC+GGG | - | chr4_1:76557717-76557736 | None:intergenic | 40.0% | |
| CATCAAACACGGCAAATGTT+CGG | - | chr4_1:76557718-76557737 | None:intergenic | 40.0% | |
| AGTCAATCTTCTTGAGGAAG+AGG | + | chr4_1:76557760-76557779 | Msa0573370:CDS | 40.0% | |
| GTCAATCTTCTTGAGGAAGA+GGG | + | chr4_1:76557761-76557780 | Msa0573370:CDS | 40.0% | |
| CTTTGAACTCACCCCATATT+TGG | - | chr4_1:76557842-76557861 | None:intergenic | 40.0% | |
| CAAATATGGGGTGAGTTCAA+AGG | + | chr4_1:76557840-76557859 | Msa0573370:intron | 40.0% | |
| AATATGGGGTGAGTTCAAAG+GGG | + | chr4_1:76557842-76557861 | Msa0573370:intron | 40.0% | |
| CAGAGAGTAAAGAACTGTGT+AGG | - | chr4_1:76557906-76557925 | None:intergenic | 40.0% | |
| AGCATGTGGGAATTACACTA+TGG | - | chr4_1:76558046-76558065 | None:intergenic | 40.0% | |
| AGCTGTGAATGTTAGCTCAT+AGG | - | chr4_1:76558143-76558162 | None:intergenic | 40.0% | |
| AGTGATTATCATGACCCATG+AGG | + | chr4_1:76558165-76558184 | Msa0573370:intron | 40.0% | |
| AAGGCATGTTGTGAAGGAAT+TGG | + | chr4_1:76558548-76558567 | Msa0573370:intron | 40.0% | |
| ! | TACAGACTTCCTTGATGATC+AGG | + | chr4_1:76558635-76558654 | Msa0573370:CDS | 40.0% |
| ACTCCGATCTCAAGGAAACA+AGG | + | chr4_1:76555179-76555198 | Msa0573370:CDS | 45.0% | |
| ! | AGAGAGGAGTTGGTTCATGT+CGG | - | chr4_1:76555231-76555250 | None:intergenic | 45.0% |
| TGGCTCAGAGAAGATAAGTG+AGG | - | chr4_1:76555389-76555408 | None:intergenic | 45.0% | |
| ! | ACGTCTCCAATCAGAAGTGT+CGG | - | chr4_1:76555412-76555431 | None:intergenic | 45.0% |
| ! | AACAATTCCGGCTTGTCAAC+GGG | - | chr4_1:76555702-76555721 | None:intergenic | 45.0% |
| ! | CAACAATTCCGGCTTGTCAA+CGG | - | chr4_1:76555703-76555722 | None:intergenic | 45.0% |
| ATCGCCTGAGACAACAATTC+CGG | - | chr4_1:76555714-76555733 | None:intergenic | 45.0% | |
| !! | CGGAGGTATTGGAGTCTATT+CGG | + | chr4_1:76555757-76555776 | Msa0573370:intron | 45.0% |
| GAAAGAAAGAGGAGCTGTCA+TGG | + | chr4_1:76556173-76556192 | Msa0573370:CDS | 45.0% | |
| ! | AGCTGTCATGGAAGAGTACA+GGG | + | chr4_1:76556185-76556204 | Msa0573370:CDS | 45.0% |
| TGCTCATTGGACTCTGTTGA+TGG | + | chr4_1:76556239-76556258 | Msa0573370:CDS | 45.0% | |
| ! | CATTGGACTCTGTTGATGGA+AGG | + | chr4_1:76556243-76556262 | Msa0573370:CDS | 45.0% |
| TAAAAATGCCTCACGGTCTC+AGG | - | chr4_1:76556453-76556472 | None:intergenic | 45.0% | |
| !!! | GATCAGGTGCTGGAATTTTC+TGG | - | chr4_1:76556664-76556683 | None:intergenic | 45.0% |
| TGGAATGTTGGAATAGGTGG+AGG | - | chr4_1:76556686-76556705 | None:intergenic | 45.0% | |
| TCCACCTATTCCAACATTCC+AGG | + | chr4_1:76556685-76556704 | Msa0573370:CDS | 45.0% | |
| ACCTGGAATGTTGGAATAGG+TGG | - | chr4_1:76556689-76556708 | None:intergenic | 45.0% | |
| GGAACCTGGAATGTTGGAAT+AGG | - | chr4_1:76556692-76556711 | None:intergenic | 45.0% | |
| ! | TGTGATGGAACCTGGAATGT+TGG | - | chr4_1:76556698-76556717 | None:intergenic | 45.0% |
| TTCCATCACATGATGACCCA+CGG | + | chr4_1:76556708-76556727 | Msa0573370:CDS | 45.0% | |
| ! | TGTTGAATCTGAAGCTGCTG+GGG | + | chr4_1:76556742-76556761 | Msa0573370:CDS | 45.0% |
| AATAGGGTGGATCCTTCCTA+CGG | - | chr4_1:76556997-76557016 | None:intergenic | 45.0% | |
| GCTGAACATGAGAAATAGGG+TGG | - | chr4_1:76557010-76557029 | None:intergenic | 45.0% | |
| AAAAGGAACTCTTGAAGCCC+TGG | + | chr4_1:76557090-76557109 | Msa0573370:CDS | 45.0% | |
| ! | CACGTGGTAGAAGAGTCTTT+TGG | - | chr4_1:76557514-76557533 | None:intergenic | 45.0% |
| TCAAACACGGCAAATGTTCG+GGG | - | chr4_1:76557716-76557735 | None:intergenic | 45.0% | |
| TGATATGGGGCGAGTTCAAA+GGG | + | chr4_1:76557930-76557949 | Msa0573370:intron | 45.0% | |
| CCTATAGGGAAAGCCAAGTA+AGG | - | chr4_1:76558282-76558301 | None:intergenic | 45.0% | |
| ! | CCTTACTTGGCTTTCCCTAT+AGG | + | chr4_1:76558279-76558298 | Msa0573370:intron | 45.0% |
| ! | AGACACAGAGTGGGAAGTGT+TGG | + | chr4_1:76555101-76555120 | Msa0573370:five_prime_UTR | 50.0% |
| ! | ATCGGAGTTGCTGCTTCTGA+TGG | - | chr4_1:76555167-76555186 | None:intergenic | 50.0% |
| AAGCAGCAACTCCGATCTCA+AGG | + | chr4_1:76555171-76555190 | Msa0573370:CDS | 50.0% | |
| GACTTCGGCACTCTCGATAA+CGG | + | chr4_1:76555269-76555288 | Msa0573370:CDS | 50.0% | |
| !! | TCTCCAATCAGAAGTGTCGG+TGG | - | chr4_1:76555409-76555428 | None:intergenic | 50.0% |
| CAAGCCGGAATTGTTGTCTC+AGG | + | chr4_1:76555707-76555726 | Msa0573370:CDS | 50.0% | |
| ! | GAGCTGTCATGGAAGAGTAC+AGG | + | chr4_1:76556184-76556203 | Msa0573370:CDS | 50.0% |
| ! | GCTGTCATGGAAGAGTACAG+GGG | + | chr4_1:76556186-76556205 | Msa0573370:CDS | 50.0% |
| GTTGGAATAGGTGGAGGATC+AGG | - | chr4_1:76556680-76556699 | None:intergenic | 50.0% | |
| ! | GGTCATCATGTGATGGAACC+TGG | - | chr4_1:76556706-76556725 | None:intergenic | 50.0% |
| AACCGTGGGTCATCATGTGA+TGG | - | chr4_1:76556713-76556732 | None:intergenic | 50.0% | |
| ATAGGGTGGATCCTTCCTAC+GGG | - | chr4_1:76556996-76557015 | None:intergenic | 50.0% | |
| CTGATATGGGGCGAGTTCAA+AGG | + | chr4_1:76557929-76557948 | Msa0573370:intron | 50.0% | |
| GATATGGGGCGAGTTCAAAG+GGG | + | chr4_1:76557931-76557950 | Msa0573370:intron | 50.0% | |
| !! | GAGTGGGAAGTGTTGGACTC+TGG | + | chr4_1:76555108-76555127 | Msa0573370:five_prime_UTR | 55.0% |
| ! | GAGGAGTTGGTTCATGTCGG+TGG | - | chr4_1:76555228-76555247 | None:intergenic | 55.0% |
| TGCAGCGAACGTAGTAGCGA+AGG | - | chr4_1:76555295-76555314 | None:intergenic | 55.0% | |
| GAGCCACCGACACTTCTGAT+TGG | + | chr4_1:76555403-76555422 | Msa0573370:intron | 55.0% | |
| ! | GTTGGTTCCCGTTGACAAGC+CGG | + | chr4_1:76555692-76555711 | Msa0573370:CDS | 55.0% |
| CAGGGGAAGCAGAAATGCCA+CGG | + | chr4_1:76556203-76556222 | Msa0573370:CDS | 55.0% | |
| AGGGGAAGCAGAAATGCCAC+GGG | + | chr4_1:76556204-76556223 | Msa0573370:CDS | 55.0% | |
| CCTCACGGTCTCAGGAGAAA+CGG | - | chr4_1:76556445-76556464 | None:intergenic | 55.0% | |
| ATAGGTGGAGGATCAGGTGC+TGG | - | chr4_1:76556674-76556693 | None:intergenic | 55.0% | |
| TCTCTGACATCAGCAGCGCA+CGG | - | chr4_1:76557291-76557310 | None:intergenic | 55.0% | |
| !! | CGGGTTGGTCAGAGAGGAGT+TGG | - | chr4_1:76555241-76555260 | None:intergenic | 60.0% |
| CTCCTCTCTGACCAACCCGT+CGG | + | chr4_1:76555242-76555261 | Msa0573370:CDS | 60.0% | |
| AGCGGCTCTCATGCGTGGTT+TGG | - | chr4_1:76555321-76555340 | None:intergenic | 60.0% | |
| TCTGACGGCGAGTGCAAGAG+CGG | - | chr4_1:76555339-76555358 | None:intergenic | 60.0% | |
| CTTGCACTCGCCGTCAGAGT+CGG | + | chr4_1:76555341-76555360 | Msa0573370:CDS | 60.0% | |
| TTGCACTCGCCGTCAGAGTC+GGG | + | chr4_1:76555342-76555361 | Msa0573370:CDS | 60.0% | |
| GGGGAAGCAGAAATGCCACG+GGG | + | chr4_1:76556205-76556224 | Msa0573370:CDS | 60.0% | |
| GAAGCAGAAATGCCACGGGG+AGG | + | chr4_1:76556208-76556227 | Msa0573370:CDS | 60.0% | |
| GGAGGCTGCAGGATGCTCAT+TGG | + | chr4_1:76556226-76556245 | Msa0573370:CDS | 60.0% | |
| CCGTTTCTCCTGAGACCGTG+AGG | + | chr4_1:76556442-76556461 | Msa0573370:CDS | 60.0% | |
| GTTGCTAGGGTGCGGCTTCA+TGG | + | chr4_1:76557238-76557257 | Msa0573370:CDS | 60.0% | |
| GGCAAATGTTCGGGGCTCCA+TGG | - | chr4_1:76557708-76557727 | None:intergenic | 60.0% | |
| !! | CAACCCGTCGGCGTCGACTT+CGG | + | chr4_1:76555254-76555273 | Msa0573370:CDS | 65.0% |
| ! | AGTGCCGAAGTCGACGCCGA+CGG | - | chr4_1:76555261-76555280 | None:intergenic | 65.0% |
| GCAAGAGCGGCTCTCATGCG+TGG | - | chr4_1:76555326-76555345 | None:intergenic | 65.0% | |
| AAATGCCACGGGGAGGCTGC+AGG | + | chr4_1:76556215-76556234 | Msa0573370:CDS | 65.0% | |
| !! | CGCCGACGGGTTGGTCAGAG+AGG | - | chr4_1:76555247-76555266 | None:intergenic | 70.0% |
| CGAAGTCGACGCCGACGGGT+TGG | - | chr4_1:76555256-76555275 | None:intergenic | 70.0% | |
| GTGCCGAAGTCGACGCCGAC+GGG | - | chr4_1:76555260-76555279 | None:intergenic | 70.0% | |
| AGCATCCTGCAGCCTCCCCG+TGG | - | chr4_1:76556223-76556242 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 76555052 | 76558689 | 76555052 | ID=Msa0573370;Name=Msa0573370 |
| chr4_1 | mRNA | 76555052 | 76558689 | 76555052 | ID=Msa0573370-mRNA-1;Parent=Msa0573370;Name=Msa0573370-mRNA-1;_AED=0.12;_eAED=0.12;_QI=100|0.77|0.8|1|1|1|10|0|558 |
| chr4_1 | exon | 76555052 | 76555363 | 76555052 | ID=Msa0573370-mRNA-1:exon:26783;Parent=Msa0573370-mRNA-1 |
| chr4_1 | exon | 76555515 | 76555761 | 76555515 | ID=Msa0573370-mRNA-1:exon:26784;Parent=Msa0573370-mRNA-1 |
| chr4_1 | exon | 76556147 | 76556272 | 76556147 | ID=Msa0573370-mRNA-1:exon:26785;Parent=Msa0573370-mRNA-1 |
| chr4_1 | exon | 76556399 | 76556536 | 76556399 | ID=Msa0573370-mRNA-1:exon:26786;Parent=Msa0573370-mRNA-1 |
| chr4_1 | exon | 76556629 | 76556763 | 76556629 | ID=Msa0573370-mRNA-1:exon:26787;Parent=Msa0573370-mRNA-1 |
| chr4_1 | exon | 76556872 | 76557129 | 76556872 | ID=Msa0573370-mRNA-1:exon:26788;Parent=Msa0573370-mRNA-1 |
| chr4_1 | exon | 76557238 | 76557375 | 76557238 | ID=Msa0573370-mRNA-1:exon:26789;Parent=Msa0573370-mRNA-1 |
| chr4_1 | exon | 76557461 | 76557530 | 76557461 | ID=Msa0573370-mRNA-1:exon:26790;Parent=Msa0573370-mRNA-1 |
| chr4_1 | exon | 76557636 | 76557849 | 76557636 | ID=Msa0573370-mRNA-1:exon:26791;Parent=Msa0573370-mRNA-1 |
| chr4_1 | exon | 76558551 | 76558689 | 76558551 | ID=Msa0573370-mRNA-1:exon:26792;Parent=Msa0573370-mRNA-1 |
| chr4_1 | five_prime_UTR | 76555052 | 76555151 | 76555052 | ID=Msa0573370-mRNA-1:five_prime_utr;Parent=Msa0573370-mRNA-1 |
| chr4_1 | CDS | 76555152 | 76555363 | 76555152 | ID=Msa0573370-mRNA-1:cds;Parent=Msa0573370-mRNA-1 |
| chr4_1 | CDS | 76555515 | 76555761 | 76555515 | ID=Msa0573370-mRNA-1:cds;Parent=Msa0573370-mRNA-1 |
| chr4_1 | CDS | 76556147 | 76556272 | 76556147 | ID=Msa0573370-mRNA-1:cds;Parent=Msa0573370-mRNA-1 |
| chr4_1 | CDS | 76556399 | 76556536 | 76556399 | ID=Msa0573370-mRNA-1:cds;Parent=Msa0573370-mRNA-1 |
| chr4_1 | CDS | 76556629 | 76556763 | 76556629 | ID=Msa0573370-mRNA-1:cds;Parent=Msa0573370-mRNA-1 |
| chr4_1 | CDS | 76556872 | 76557129 | 76556872 | ID=Msa0573370-mRNA-1:cds;Parent=Msa0573370-mRNA-1 |
| chr4_1 | CDS | 76557238 | 76557375 | 76557238 | ID=Msa0573370-mRNA-1:cds;Parent=Msa0573370-mRNA-1 |
| chr4_1 | CDS | 76557461 | 76557530 | 76557461 | ID=Msa0573370-mRNA-1:cds;Parent=Msa0573370-mRNA-1 |
| chr4_1 | CDS | 76557636 | 76557849 | 76557636 | ID=Msa0573370-mRNA-1:cds;Parent=Msa0573370-mRNA-1 |
| chr4_1 | CDS | 76558551 | 76558689 | 76558551 | ID=Msa0573370-mRNA-1:cds;Parent=Msa0573370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
