AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0574190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0574190 MtrunA17_Chr8g0390411 89.259 270 8 2 1 249 1 270 1.42e-171 473
Msa0574190 MtrunA17_Chr8g0390421 81.132 265 27 3 8 249 1 265 2.46e-153 427
Msa0574190 MtrunA17_Chr3g0129441 54.839 248 81 5 27 249 10 251 2.36e-93 275
Msa0574190 MtrunA17_Chr1g0154971 66.667 135 29 1 100 218 6 140 5.79e-58 181
Msa0574190 MtrunA17_Chr1g0154981 56.122 98 31 2 19 104 3 100 1.79e-26 99.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0574190 AT2G20120.2 67.451 255 55 4 11 237 3 257 8.30e-113 325
Msa0574190 AT2G20120.1 67.451 255 55 4 11 237 3 257 8.30e-113 325
Msa0574190 AT2G20130.1 70.661 242 46 3 21 237 6 247 2.87e-112 323
Msa0574190 AT2G18460.1 64.609 243 61 3 21 238 6 248 7.40e-109 315
Msa0574190 AT1G43130.1 60.714 224 63 3 34 236 23 242 2.07e-91 270
Msa0574190 AT1G43130.2 64.824 199 49 2 59 236 11 209 2.23e-89 264
Msa0574190 AT1G43130.3 64.824 199 49 2 59 236 11 209 2.23e-89 264

Find 101 sgRNAs with CRISPR-Local

Find 652 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGCAGAAATTGTCGTTTC+TGG 0.156987 4_1:+77555170 Msa0574190:intron
AAATAAAATAATTGAGAAAT+TGG 0.212115 4_1:+77547287 None:intergenic
CACCTCGTCTGTTGTCCTTC+AGG 0.236531 4_1:+77552250 Msa0574190:CDS
GCTGTTTCACAGACTTATTC+TGG 0.239736 4_1:+77554554 Msa0574190:intron
GGTGCATCTGTCCTGGGACT+TGG 0.253442 4_1:+77551822 Msa0574190:CDS
CCCACAAACCATCTTTATAT+TGG 0.257952 4_1:+77554605 Msa0574190:CDS
CGTTTCAAGTTTCGCAAAAC+TGG 0.263206 4_1:-77547373 None:intergenic
CATCTTGGAATCAATATCTT+TGG 0.280340 4_1:+77551078 Msa0574190:CDS
GTGCATCTGTCCTGGGACTT+GGG 0.307143 4_1:+77551823 Msa0574190:CDS
ATAACCTTCATCTTCTTGAT+TGG 0.331111 4_1:+77551777 Msa0574190:CDS
TGATAGAAGATGACAGTTAA+AGG 0.332765 4_1:+77555259 Msa0574190:exon
CCTTCCCGTACTGATAAGTT+TGG 0.338870 4_1:-77554665 None:intergenic
TTTAGTACTTGTGCATATCT+TGG 0.355304 4_1:+77555528 Msa0574190:three_prime_UTR
ATTTAACAGCTTATTTCATA+TGG 0.361711 4_1:+77555296 Msa0574190:three_prime_UTR
ATGGTTGGGTGCATCTGTCC+TGG 0.367570 4_1:+77551815 Msa0574190:CDS
TTTAACTGTCATCTTCTATC+AGG 0.374360 4_1:-77555257 None:intergenic
AATGATGGCTACTTCTTTGA+AGG 0.378925 4_1:-77552189 None:intergenic
GGAGGAAGACGAAGAAGGTT+TGG 0.385220 4_1:-77547520 None:intergenic
GTTTGTTTGAAAATATAGTT+TGG 0.385250 4_1:+77555459 Msa0574190:three_prime_UTR
TAACCTTCATCTTCTTGATT+GGG 0.393532 4_1:+77551778 Msa0574190:CDS
GACGCTTGATTCACATGTTC+CGG 0.398210 4_1:+77555220 Msa0574190:CDS
AATCAAGAAGATGAAGGTTA+TGG 0.402919 4_1:-77551775 None:intergenic
ACTTGAAACGGCGTCGTTGA+TGG 0.403433 4_1:+77547386 Msa0574190:exon
TAAATTCTACATTCTATTGC+CGG 0.405133 4_1:-77555434 None:intergenic
TATAGTTTGGGTGATGGTAC+AGG 0.405672 4_1:+77555472 Msa0574190:three_prime_UTR
TTTCCAAAGTTGTTCAGAGC+TGG 0.416693 4_1:+77548584 Msa0574190:CDS
CTGTCCTGGGACTTGGGGAG+TGG 0.425838 4_1:+77551829 Msa0574190:CDS
GGTTCTTCCTCCTCAAGTTA+TGG 0.426340 4_1:+77547407 Msa0574190:CDS
TCTCCGATCTATGTTCATCT+TGG 0.430520 4_1:+77551063 Msa0574190:CDS
ATGTAGAAGGTGATTGCAAT+TGG 0.430569 4_1:-77551003 None:intergenic
TGCCCAGCTCTGAACAACTT+TGG 0.433303 4_1:-77548587 None:intergenic
CCAATATAAAGATGGTTTGT+GGG 0.434460 4_1:-77554605 None:intergenic
TGCATCTGTCCTGGGACTTG+GGG 0.442253 4_1:+77551824 Msa0574190:CDS
TTCCAAAGTTGTTCAGAGCT+GGG 0.447509 4_1:+77548585 Msa0574190:CDS
CGAAGAAGGTTTGGAAGCAT+TGG 0.448650 4_1:-77547511 None:intergenic
TTATCAGTACGGGAAGGAAT+TGG 0.452210 4_1:+77554671 Msa0574190:CDS
AAGCAATGTGTTGCAAATAC+AGG 0.467265 4_1:+77555339 Msa0574190:three_prime_UTR
GAACCACCAGGTAATGTAGA+AGG 0.467593 4_1:-77551016 None:intergenic
ACCAATATAAAGATGGTTTG+TGG 0.468348 4_1:-77554606 None:intergenic
CAATCACCTTCTACATTACC+TGG 0.474074 4_1:+77551010 Msa0574190:CDS
CTTAATATATTATGTTTCTA+CGG 0.479122 4_1:+77555606 Msa0574190:three_prime_UTR
TGGTTGGGTGCATCTGTCCT+GGG 0.488396 4_1:+77551816 Msa0574190:CDS
TGGTCGCCGGCATTAGCGAC+GGG 0.488768 4_1:-77547486 None:intergenic
TTACAACATTCTATTGAGGT+AGG 0.495533 4_1:+77555496 Msa0574190:three_prime_UTR
GTTTGGCCTAATGACATCCT+TGG 0.502197 4_1:-77554648 None:intergenic
CTTATCCCCGTCGCTAATGC+CGG 0.513099 4_1:+77547480 Msa0574190:CDS
GGAAGCATTGGAGTGGTCGC+CGG 0.519869 4_1:-77547499 None:intergenic
TTTGTTTGAAAATATAGTTT+GGG 0.523838 4_1:+77555460 Msa0574190:three_prime_UTR
CACACGTGGATGTCGAATGA+TGG 0.527730 4_1:-77552204 None:intergenic
AGTACTTGTGCATATCTTGG+CGG 0.530227 4_1:+77555531 Msa0574190:three_prime_UTR
GCCGGCATGATGAACGGAGG+AGG 0.531869 4_1:-77547538 None:intergenic
ATCGATCTAACACTGGTTCG+CGG 0.533820 4_1:-77555382 None:intergenic
CGTGTGGGAGAATATGCATT+GGG 0.534463 4_1:+77552221 Msa0574190:CDS
CTGCCGCTGACGACAGTAGA+GGG 0.537551 4_1:-77547444 None:intergenic
TCCTCCTCCGTTCATCATGC+CGG 0.539661 4_1:+77547537 Msa0574190:CDS
TGAAAATATAGTTTGGGTGA+TGG 0.545604 4_1:+77555466 Msa0574190:three_prime_UTR
GTGGTCGCCGGCATTAGCGA+CGG 0.553074 4_1:-77547487 None:intergenic
ATTCCAAGATGAACATAGAT+CGG 0.557215 4_1:-77551066 None:intergenic
TCAACACCAAGGATGTCATT+AGG 0.557684 4_1:+77554642 Msa0574190:CDS
TTAGGCCAAACTTATCAGTA+CGG 0.565789 4_1:+77554660 Msa0574190:CDS
ATATATCACCAATATAAAGA+TGG 0.565838 4_1:-77554613 None:intergenic
ACAGACTTATTCTGGAGATG+AGG 0.566556 4_1:+77554562 Msa0574190:intron
TGCAGAAGAAGCGAAGCAAA+AGG 0.567795 4_1:+77547340 Msa0574190:five_prime_UTR
TAGGCCAAACTTATCAGTAC+GGG 0.569426 4_1:+77554661 Msa0574190:CDS
TACAACATTCTATTGAGGTA+GGG 0.570136 4_1:+77555497 Msa0574190:three_prime_UTR
GCAGAAATTGTCGTTTCTGG+AGG 0.570313 4_1:+77555173 Msa0574190:intron
AATCCCAATCAAGAAGATGA+AGG 0.570454 4_1:-77551781 None:intergenic
TGAATCCCTAACCTCACGGC+CGG 0.572005 4_1:-77547556 None:intergenic
TTCATATGGAGATATCAGAA+AGG 0.578114 4_1:+77555310 Msa0574190:three_prime_UTR
TAAACCACTCCCCAAGTCCC+AGG 0.578135 4_1:-77551833 None:intergenic
ATAATTTATCGATCTAACAC+TGG 0.585191 4_1:-77555389 None:intergenic
CTCACGGCCGGCATGATGAA+CGG 0.585801 4_1:-77547544 None:intergenic
AATTGAATTGCTATAACGAA+CGG 0.591032 4_1:-77555557 None:intergenic
ATAGTTTGGGTGATGGTACA+GGG 0.593954 4_1:+77555473 Msa0574190:three_prime_UTR
TCAGGTCTACTTATTTCCAC+CGG 0.598556 4_1:-77555239 None:intergenic
AATATATTATGTTTCTACGG+TGG 0.600946 4_1:+77555609 Msa0574190:three_prime_UTR
TCGTCGACCATAACTTGAGG+AGG 0.605789 4_1:-77547414 None:intergenic
CATGTGAATCAAGCGTCGAT+AGG 0.608071 4_1:-77555214 None:intergenic
ACGGAGGAGGAAGACGAAGA+AGG 0.610501 4_1:-77547525 None:intergenic
CACAAAATGAATGAACCACC+AGG 0.613316 4_1:-77551028 None:intergenic
GCCGCTGACGACAGTAGAGG+GGG 0.617322 4_1:-77547442 None:intergenic
ATCATTCGACATCCACGTGT+GGG 0.619745 4_1:+77552206 Msa0574190:CDS
ATGTGTTGCAAATACAGGCA+TGG 0.621473 4_1:+77555344 Msa0574190:three_prime_UTR
CGTTCATCATGCCGGCCGTG+AGG 0.624713 4_1:+77547545 Msa0574190:CDS
AGGGTTACAACATTCTATTG+AGG 0.627949 4_1:+77555492 Msa0574190:three_prime_UTR
TGCCGCTGACGACAGTAGAG+GGG 0.630092 4_1:-77547443 None:intergenic
ACGTGTGGGAGAATATGCAT+TGG 0.630190 4_1:+77552220 Msa0574190:CDS
TTATAGATATGACGAACAAG+AGG 0.630923 4_1:-77551867 None:intergenic
CATCATTCGACATCCACGTG+TGG 0.639962 4_1:+77552205 Msa0574190:CDS
GCTTGATTCACATGTTCCGG+TGG 0.642011 4_1:+77555223 Msa0574190:CDS
TCTGCCGCTGACGACAGTAG+AGG 0.646875 4_1:-77547445 None:intergenic
TTATCGTCGACCATAACTTG+AGG 0.650721 4_1:-77547417 None:intergenic
AACCTGAAGGACAACAGACG+AGG 0.653155 4_1:-77552252 None:intergenic
AAGGTTTGGAAGCATTGGAG+TGG 0.656476 4_1:-77547506 None:intergenic
AATGCATATTCTCCCACACG+TGG 0.673732 4_1:-77552218 None:intergenic
TATATTTCTTGTCAACACCA+AGG 0.675625 4_1:+77554631 Msa0574190:CDS
GGTCGCCGGCATTAGCGACG+GGG 0.686093 4_1:-77547485 None:intergenic
TCAAGCGTCGATAGGATCTG+CGG 0.688220 4_1:-77555206 None:intergenic
ACGGCCGGCATGATGAACGG+AGG 0.688570 4_1:-77547541 None:intergenic
CCAAACTTATCAGTACGGGA+AGG 0.693328 4_1:+77554665 Msa0574190:CDS
TCACCTTCTACATTACCTGG+TGG 0.710584 4_1:+77551013 Msa0574190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAGAAAAAATAAATAAAAC+AGG - chr4_1:77550946-77550965 None:intergenic 10.0%
!! AAAATAAGATTAGATTATTA+AGG + chr4_1:77551350-77551369 Msa0574190:intron 10.0%
!! AAATAAGATTAGATTATTAA+GGG + chr4_1:77551351-77551370 Msa0574190:intron 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_1:77551137-77551156 None:intergenic 100.0%
!! CAAATACTTAAAAAATTCAA+CGG - chr4_1:77547595-77547614 None:intergenic 15.0%
!! AAATTGCAATATATATGAAT+GGG - chr4_1:77548433-77548452 None:intergenic 15.0%
!! AAAATTGCAATATATATGAA+TGG - chr4_1:77548434-77548453 None:intergenic 15.0%
!! AATGTAGATAAAAAAATTAG+AGG - chr4_1:77548794-77548813 None:intergenic 15.0%
!! GATAGTTATTTAATGTATAT+GGG - chr4_1:77549529-77549548 None:intergenic 15.0%
!! AAAAATAATTGAATTGTTGA+GGG + chr4_1:77551576-77551595 Msa0574190:intron 15.0%
!!! ATATCTTACTCTTTTTTTTT+TGG + chr4_1:77551937-77551956 Msa0574190:intron 15.0%
!!! TATCTTACTCTTTTTTTTTT+GGG + chr4_1:77551938-77551957 Msa0574190:intron 15.0%
!! ATTAACAGTGTTAAATTAAA+TGG - chr4_1:77553467-77553486 None:intergenic 15.0%
!! TTTCAAAATTATAAGCATTT+GGG + chr4_1:77553668-77553687 Msa0574190:intron 15.0%
!! AATTGTATATGTGATATTTA+TGG - chr4_1:77554912-77554931 None:intergenic 15.0%
!! TTTGTTTGAAAATATAGTTT+GGG + chr4_1:77555460-77555479 Msa0574190:three_prime_UTR 15.0%
!!! CTTAATATATTATGTTTCTA+CGG + chr4_1:77555606-77555625 Msa0574190:three_prime_UTR 15.0%
!!! ACTATTGCTTTTCATATAAT+TGG + chr4_1:77547968-77547987 Msa0574190:intron 20.0%
!! GTACTAAATAACATGTATAT+CGG + chr4_1:77548188-77548207 Msa0574190:intron 20.0%
!! AAATTTATTACACTAAATGC+TGG + chr4_1:77549338-77549357 Msa0574190:intron 20.0%
!! AATTAGCGATAAGAAAATAA+AGG + chr4_1:77549418-77549437 Msa0574190:intron 20.0%
!! GATAAGAAAATAAAGGTTTA+CGG + chr4_1:77549425-77549444 Msa0574190:intron 20.0%
!! GGATAGTTATTTAATGTATA+TGG - chr4_1:77549530-77549549 None:intergenic 20.0%
!! ATTATCTATTTATCACTAAG+AGG + chr4_1:77549571-77549590 Msa0574190:intron 20.0%
!! TGTTAAACTTCTTATTGTAA+CGG - chr4_1:77549815-77549834 None:intergenic 20.0%
!!! TATTGTGAAAATAGACATTT+TGG - chr4_1:77550460-77550479 None:intergenic 20.0%
!! AAGAAAGAAGATGTAAAAAA+AGG - chr4_1:77550828-77550847 None:intergenic 20.0%
!!! TGAACATGTTTTTTTTTTTG+AGG + chr4_1:77550853-77550872 Msa0574190:intron 20.0%
!!! GAACATGTTTTTTTTTTTGA+GGG + chr4_1:77550854-77550873 Msa0574190:intron 20.0%
!! ATATATAAGAGAAAAAATGC+AGG - chr4_1:77551249-77551268 None:intergenic 20.0%
!!! TTGTAGCAGAAAAATAATTT+TGG + chr4_1:77551379-77551398 Msa0574190:intron 20.0%
!! AAAAAGAATTGAATTGCTAA+GGG + chr4_1:77551430-77551449 Msa0574190:intron 20.0%
!! TAAATATATGCCAAAGTTAT+AGG - chr4_1:77551538-77551557 None:intergenic 20.0%
!! GAAAAATAATTGAATTGTTG+AGG + chr4_1:77551575-77551594 Msa0574190:intron 20.0%
!! ATAATCTACACCATTATATA+AGG - chr4_1:77551664-77551683 None:intergenic 20.0%
!! TGATGCTAATGTATATTTAA+TGG + chr4_1:77552107-77552126 Msa0574190:intron 20.0%
!!! TTTCTTAAATAGTTCTACTT+TGG + chr4_1:77552273-77552292 Msa0574190:intron 20.0%
!!! TTTTTTTTTTTGTCCATGTA+AGG + chr4_1:77552620-77552639 Msa0574190:intron 20.0%
!! TTTAATACACATACAAACAA+AGG - chr4_1:77553046-77553065 None:intergenic 20.0%
!! CAAGTTAGTAGTATTAATTA+GGG + chr4_1:77553088-77553107 Msa0574190:intron 20.0%
!! AAGTTAGTAGTATTAATTAG+GGG + chr4_1:77553089-77553108 Msa0574190:intron 20.0%
!! ATGTATCTAGTAATTTGAAA+AGG + chr4_1:77553134-77553153 Msa0574190:intron 20.0%
!! TGTATCTAGTAATTTGAAAA+GGG + chr4_1:77553135-77553154 Msa0574190:intron 20.0%
!!! TTCATTAAAGCTTATTTTCT+AGG + chr4_1:77553327-77553346 Msa0574190:intron 20.0%
!!! TCATTAAAGCTTATTTTCTA+GGG + chr4_1:77553328-77553347 Msa0574190:intron 20.0%
!!! TCCTTAATTTTTATTCAAAG+TGG + chr4_1:77553427-77553446 Msa0574190:intron 20.0%
!! GTTTCAAAATTATAAGCATT+TGG + chr4_1:77553667-77553686 Msa0574190:intron 20.0%
!!! TGATTTTTTTTTCTTCTCAA+AGG - chr4_1:77553794-77553813 None:intergenic 20.0%
!!! TGTTTTAAAAGCTTTTAACA+GGG - chr4_1:77553857-77553876 None:intergenic 20.0%
!!! TCATTTTGAATAAACCTTAA+GGG + chr4_1:77554013-77554032 Msa0574190:intron 20.0%
!! TGTGTTTAATTAAAAACTAG+AGG + chr4_1:77554041-77554060 Msa0574190:intron 20.0%
!! GTGTTTAATTAAAAACTAGA+GGG + chr4_1:77554042-77554061 Msa0574190:intron 20.0%
!! TGTTTAATTAAAAACTAGAG+GGG + chr4_1:77554043-77554062 Msa0574190:intron 20.0%
!! ATTTAAGAAGATATCAAATG+AGG + chr4_1:77554077-77554096 Msa0574190:intron 20.0%
!! TTGATAGAGTTTAGAAAATA+GGG - chr4_1:77554116-77554135 None:intergenic 20.0%
!! ATTGATAGAGTTTAGAAAAT+AGG - chr4_1:77554117-77554136 None:intergenic 20.0%
!!! AGTTTTATGTTCTTTTTTCT+TGG + chr4_1:77554288-77554307 Msa0574190:intron 20.0%
!! AATTTACTATATTGTTGTGA+AGG + chr4_1:77554343-77554362 Msa0574190:intron 20.0%
!! TAATTATCACTAATCCATAA+GGG - chr4_1:77554470-77554489 None:intergenic 20.0%
!! TTAATTATCACTAATCCATA+AGG - chr4_1:77554471-77554490 None:intergenic 20.0%
!! ATATATCACCAATATAAAGA+TGG - chr4_1:77554616-77554635 None:intergenic 20.0%
!!! TATTATGAAGATGTTCTTTT+TGG + chr4_1:77554777-77554796 Msa0574190:intron 20.0%
!!! TTTGTTTGTGATTTAGAATT+AGG + chr4_1:77554842-77554861 Msa0574190:intron 20.0%
!!! CTCCAATATATTTTTAACAT+TGG + chr4_1:77555141-77555160 Msa0574190:intron 20.0%
!! AGCCAATGTTAAAAATATAT+TGG - chr4_1:77555146-77555165 None:intergenic 20.0%
!! ATTTAACAGCTTATTTCATA+TGG + chr4_1:77555296-77555315 Msa0574190:three_prime_UTR 20.0%
!! GTTTGTTTGAAAATATAGTT+TGG + chr4_1:77555459-77555478 Msa0574190:three_prime_UTR 20.0%
!!! GATGTTTTTATAAGCTATCT+TGG + chr4_1:77547761-77547780 Msa0574190:intron 25.0%
! AATTATGTTAATCCAAACCA+GGG - chr4_1:77548327-77548346 None:intergenic 25.0%
! AAATTATGTTAATCCAAACC+AGG - chr4_1:77548328-77548347 None:intergenic 25.0%
!! TTTAAGTAAAAGTACAAAGC+TGG + chr4_1:77548395-77548414 Msa0574190:intron 25.0%
! ATGTAAACTGAGAAGATATT+AGG - chr4_1:77548656-77548675 None:intergenic 25.0%
! CAGGAAATAATAAGATAAGA+TGG - chr4_1:77548721-77548740 None:intergenic 25.0%
! TATCATGTAATGGTAACATT+TGG - chr4_1:77548861-77548880 None:intergenic 25.0%
!! TTTGCTAGTTATGTAGTTTT+AGG + chr4_1:77548916-77548935 Msa0574190:intron 25.0%
!!! TTGCTAGTTATGTAGTTTTA+GGG + chr4_1:77548917-77548936 Msa0574190:intron 25.0%
! CTGAAGATAATCTGAAAAAT+GGG - chr4_1:77549216-77549235 None:intergenic 25.0%
! TCTGAAGATAATCTGAAAAA+TGG - chr4_1:77549217-77549236 None:intergenic 25.0%
! TTATTTCAGAACAATCTAGA+AGG - chr4_1:77549270-77549289 None:intergenic 25.0%
! AGACTTTCAAAAAAATTGGA+AGG - chr4_1:77549464-77549483 None:intergenic 25.0%
!!! TCCAATTTTTTTGAAAGTCT+TGG + chr4_1:77549464-77549483 Msa0574190:intron 25.0%
! ACCAAGACTTTCAAAAAAAT+TGG - chr4_1:77549468-77549487 None:intergenic 25.0%
! GTTATTTAATGTATATGGGA+GGG - chr4_1:77549525-77549544 None:intergenic 25.0%
! AGTTATTTAATGTATATGGG+AGG - chr4_1:77549526-77549545 None:intergenic 25.0%
! GTGATAAATAGATAATCGAA+AGG - chr4_1:77549567-77549586 None:intergenic 25.0%
!!! TTATTGGCTTAAATCATTGT+GGG - chr4_1:77549705-77549724 None:intergenic 25.0%
! TAATCACTTAAAGGATAGAA+TGG - chr4_1:77550212-77550231 None:intergenic 25.0%
! TTTAAGTGATTACCAAATCT+GGG + chr4_1:77550220-77550239 Msa0574190:intron 25.0%
! ATTCAAAACATCAGATCTAA+CGG + chr4_1:77550260-77550279 Msa0574190:intron 25.0%
!! TCTATATAGTCTAAAACCAA+GGG - chr4_1:77550397-77550416 None:intergenic 25.0%
!! ATCTATATAGTCTAAAACCA+AGG - chr4_1:77550398-77550417 None:intergenic 25.0%
!!! CATTTTGGCTATAATTTGAT+TGG - chr4_1:77550445-77550464 None:intergenic 25.0%
!!! TCAATATCACTGGTTTAAAA+AGG + chr4_1:77550504-77550523 Msa0574190:intron 25.0%
! GTTTAAAAAGGATTAAGTGA+TGG + chr4_1:77550516-77550535 Msa0574190:intron 25.0%
!!! AAAACTACTCTGAAATGTTA+AGG - chr4_1:77550666-77550685 None:intergenic 25.0%
!!! TTGTGTTTTAGTTCTTTTTG+TGG + chr4_1:77550723-77550742 Msa0574190:intron 25.0%
! AAACAGGAATTCATAACAAA+TGG - chr4_1:77550930-77550949 None:intergenic 25.0%
!!! TCAATAAAGTGTCGATTTAA+AGG + chr4_1:77551164-77551183 Msa0574190:intron 25.0%
!!! CAATAAAGTGTCGATTTAAA+GGG + chr4_1:77551165-77551184 Msa0574190:intron 25.0%
! GAAAAAGAATTGAATTGCTA+AGG + chr4_1:77551429-77551448 Msa0574190:intron 25.0%
!!! ACTAAGGATTAACTACTTTT+CGG - chr4_1:77551481-77551500 None:intergenic 25.0%
! TCCAATCAAAAGTAGTTAAT+TGG + chr4_1:77551619-77551638 Msa0574190:intron 25.0%
!!! TTTGAGTTGTCCTTATATAA+TGG + chr4_1:77551651-77551670 Msa0574190:intron 25.0%
! TGCTAATGTATATTTAATGG+CGG + chr4_1:77552110-77552129 Msa0574190:intron 25.0%
! AACAGAACAGAATTATAACA+TGG + chr4_1:77552448-77552467 Msa0574190:intron 25.0%
! TGTGTAATGAAACAACTATA+TGG + chr4_1:77552498-77552517 Msa0574190:intron 25.0%
! TAATGAAACAACTATATGGT+AGG + chr4_1:77552502-77552521 Msa0574190:intron 25.0%
! ACCAGTTATTTAATTGTATG+TGG + chr4_1:77552541-77552560 Msa0574190:intron 25.0%
! ACCACATACAATTAAATAAC+TGG - chr4_1:77552545-77552564 None:intergenic 25.0%
! GATAGCAATAGATAAGTATT+CGG + chr4_1:77552883-77552902 Msa0574190:intron 25.0%
! ATAGCAATAGATAAGTATTC+GGG + chr4_1:77552884-77552903 Msa0574190:intron 25.0%
! AAATGTGAAAAAAGCAAAGA+GGG - chr4_1:77552961-77552980 None:intergenic 25.0%
! GCAAGTTAGTAGTATTAATT+AGG + chr4_1:77553087-77553106 Msa0574190:intron 25.0%
! GTATCTAGTAATTTGAAAAG+GGG + chr4_1:77553136-77553155 Msa0574190:intron 25.0%
! GGACAAAAATAAAGTCAAAT+GGG + chr4_1:77553170-77553189 Msa0574190:intron 25.0%
! TGTGTTTGGTTAAAATTAGA+GGG - chr4_1:77553402-77553421 None:intergenic 25.0%
! TTGTGTTTGGTTAAAATTAG+AGG - chr4_1:77553403-77553422 None:intergenic 25.0%
! AATTAAGGAAGATTTGTGTT+TGG - chr4_1:77553416-77553435 None:intergenic 25.0%
!! GCCACTTTGAATAAAAATTA+AGG - chr4_1:77553431-77553450 None:intergenic 25.0%
! ACAGTGTTAAATTAAATGGA+GGG - chr4_1:77553463-77553482 None:intergenic 25.0%
! AACAGTGTTAAATTAAATGG+AGG - chr4_1:77553464-77553483 None:intergenic 25.0%
!!! GCTTATAATTTTGAAACTGA+AGG - chr4_1:77553664-77553683 None:intergenic 25.0%
!!! GTGTTTTAAAAGCTTTTAAC+AGG - chr4_1:77553858-77553877 None:intergenic 25.0%
! TTCATTTACCCTCTTAAAAA+TGG - chr4_1:77553940-77553959 None:intergenic 25.0%
!!! GTCATTTTGAATAAACCTTA+AGG + chr4_1:77554012-77554031 Msa0574190:intron 25.0%
! AAAGAACATAAAACTCTACA+TGG - chr4_1:77554283-77554302 None:intergenic 25.0%
! TAGTAAATTGCAATATCGTA+TGG - chr4_1:77554332-77554351 None:intergenic 25.0%
! TAAAGATTATCTGCTTATCA+CGG + chr4_1:77554491-77554510 Msa0574190:intron 25.0%
! AAATCACAAACAAAAACATC+AGG - chr4_1:77554836-77554855 None:intergenic 25.0%
! ATAATTTATCGATCTAACAC+TGG - chr4_1:77555392-77555411 None:intergenic 25.0%
! TAAATTCTACATTCTATTGC+CGG - chr4_1:77555437-77555456 None:intergenic 25.0%
! AATTGAATTGCTATAACGAA+CGG - chr4_1:77555560-77555579 None:intergenic 25.0%
!! AATATATTATGTTTCTACGG+TGG + chr4_1:77555609-77555628 Msa0574190:three_prime_UTR 25.0%
TGCATGAGTGATTGAATTTA+TGG + chr4_1:77547631-77547650 Msa0574190:intron 30.0%
GATTGTGTTTATAGTGTGAT+TGG - chr4_1:77547717-77547736 None:intergenic 30.0%
GCTTATTTAAGCTTATCTAC+TGG - chr4_1:77547878-77547897 None:intergenic 30.0%
AAAGAAATCCCTGAAACTAA+GGG - chr4_1:77547914-77547933 None:intergenic 30.0%
AAATATGTTACACACAACGA+TGG + chr4_1:77548128-77548147 Msa0574190:intron 30.0%
TTGTAAAATAGCAGCTATAG+CGG - chr4_1:77548252-77548271 None:intergenic 30.0%
ATTATGTTAATCCAAACCAG+GGG - chr4_1:77548326-77548345 None:intergenic 30.0%
ATTTCGCAAGTTTCTTCATA+TGG + chr4_1:77548344-77548363 Msa0574190:intron 30.0%
CTTCATGCAACAAAATGAAT+AGG - chr4_1:77548501-77548520 None:intergenic 30.0%
! CTATTCATTTTGTTGCATGA+AGG + chr4_1:77548499-77548518 Msa0574190:intron 30.0%
AAATTGACAGAAACAACACA+TGG - chr4_1:77548556-77548575 None:intergenic 30.0%
!!! AACTGTGCTTTTGTTTTAGA+TGG + chr4_1:77548746-77548765 Msa0574190:intron 30.0%
! TTTAATTTATGCTGCCATCT+TGG + chr4_1:77548812-77548831 Msa0574190:intron 30.0%
GAAGTGTAACTATCATGTAA+TGG - chr4_1:77548871-77548890 None:intergenic 30.0%
!!! TAGTTTTAGGGTATGAAAGT+TGG + chr4_1:77548929-77548948 Msa0574190:intron 30.0%
TTCACCAATTTGCCAAAAAA+GGG - chr4_1:77548970-77548989 None:intergenic 30.0%
!!! TTTTTTGGCAAATTGGTGAA+GGG + chr4_1:77548970-77548989 Msa0574190:intron 30.0%
CTCAAATGATGTGAAAGTAA+AGG - chr4_1:77549147-77549166 None:intergenic 30.0%
AGATAATCTGAAAAATGGGT+TGG - chr4_1:77549212-77549231 None:intergenic 30.0%
AAGCTCTCTTATTCTTCAAA+GGG - chr4_1:77549495-77549514 None:intergenic 30.0%
! TCTAACACTCACTCTTTTAT+TGG + chr4_1:77549624-77549643 Msa0574190:intron 30.0%
!! CTTATTGGCTTAAATCATTG+TGG - chr4_1:77549706-77549725 None:intergenic 30.0%
! TCTTTTGAACACTCTCTTAT+TGG - chr4_1:77549721-77549740 None:intergenic 30.0%
CTTCTTATTGTAACGGTTAT+GGG - chr4_1:77549808-77549827 None:intergenic 30.0%
ACTTCTTATTGTAACGGTTA+TGG - chr4_1:77549809-77549828 None:intergenic 30.0%
! GATGGAATAGAAGAGTTTTT+CGG + chr4_1:77549912-77549931 Msa0574190:intron 30.0%
! AAGTAAAGGAAGCATAATGA+TGG + chr4_1:77550035-77550054 Msa0574190:intron 30.0%
! CAGATTTGGTAATCACTTAA+AGG - chr4_1:77550221-77550240 None:intergenic 30.0%
CTTTAAGTGATTACCAAATC+TGG + chr4_1:77550219-77550238 Msa0574190:intron 30.0%
TTAAGTGATTACCAAATCTG+GGG + chr4_1:77550221-77550240 Msa0574190:intron 30.0%
GACGGTACATAACTTATAAA+TGG - chr4_1:77550312-77550331 None:intergenic 30.0%
TAAGTTATGTACCGTCAATA+CGG + chr4_1:77550316-77550335 Msa0574190:intron 30.0%
TTCAAAGTTGTAGTCCTTAA+TGG + chr4_1:77550350-77550369 Msa0574190:intron 30.0%
! CTATATAGTCTAAAACCAAG+GGG - chr4_1:77550396-77550415 None:intergenic 30.0%
GTATGGTACAATAAGCAATT+GGG - chr4_1:77550423-77550442 None:intergenic 30.0%
TGGCTATAATTTGATTGGTA+TGG - chr4_1:77550440-77550459 None:intergenic 30.0%
TGCAATATTCTCAATATCAC+TGG + chr4_1:77550494-77550513 Msa0574190:intron 30.0%
TTTGTGGAAATTGTTGTCAA+TGG + chr4_1:77550739-77550758 Msa0574190:intron 30.0%
ATTCCAAGATGAACATAGAT+CGG - chr4_1:77551069-77551088 None:intergenic 30.0%
CATCTTGGAATCAATATCTT+TGG + chr4_1:77551078-77551097 Msa0574190:CDS 30.0%
ATCGACACTTTATTGATCTT+GGG - chr4_1:77551160-77551179 None:intergenic 30.0%
AATCGACACTTTATTGATCT+TGG - chr4_1:77551161-77551180 None:intergenic 30.0%
!! GCCAATTAACTACTTTTGAT+TGG - chr4_1:77551623-77551642 None:intergenic 30.0%
CAACATATTAAATGCTACCA+TGG - chr4_1:77551702-77551721 None:intergenic 30.0%
GCTTAAAGAGTTAAACTTCT+TGG + chr4_1:77551730-77551749 Msa0574190:intron 30.0%
AATCAAGAAGATGAAGGTTA+TGG - chr4_1:77551778-77551797 None:intergenic 30.0%
ATAACCTTCATCTTCTTGAT+TGG + chr4_1:77551777-77551796 Msa0574190:CDS 30.0%
TAACCTTCATCTTCTTGATT+GGG + chr4_1:77551778-77551797 Msa0574190:CDS 30.0%
! ATTTTCATGTCATCATGGTT+GGG + chr4_1:77551801-77551820 Msa0574190:CDS 30.0%
TTATAGATATGACGAACAAG+AGG - chr4_1:77551870-77551889 None:intergenic 30.0%
ACAATGCATAATATATGCAG+GGG - chr4_1:77552034-77552053 None:intergenic 30.0%
GACAATGCATAATATATGCA+GGG - chr4_1:77552035-77552054 None:intergenic 30.0%
GCTAATGTATATTTAATGGC+GGG + chr4_1:77552111-77552130 Msa0574190:intron 30.0%
GAACTATTTAAGAAACCTGA+AGG - chr4_1:77552268-77552287 None:intergenic 30.0%
! CTTAAATAGTTCTACTTTGG+TGG + chr4_1:77552276-77552295 Msa0574190:intron 30.0%
! TCTTTCATTGTTGCTTAACT+TGG + chr4_1:77552319-77552338 Msa0574190:intron 30.0%
ATAACATGGCAGTTGTTATA+TGG + chr4_1:77552462-77552481 Msa0574190:intron 30.0%
AACAACTATATGGTAGGAAT+TGG + chr4_1:77552508-77552527 Msa0574190:intron 30.0%
ACAACTATATGGTAGGAATT+GGG + chr4_1:77552509-77552528 Msa0574190:intron 30.0%
ATTGTATGTGGTGTAGTTAT+AGG + chr4_1:77552553-77552572 Msa0574190:intron 30.0%
TTGTATGTGGTGTAGTTATA+GGG + chr4_1:77552554-77552573 Msa0574190:intron 30.0%
TGATTAGTATTCAAGCTCTT+GGG + chr4_1:77552658-77552677 Msa0574190:intron 30.0%
! CCTTGACAGTTATCTTTTAA+GGG - chr4_1:77552690-77552709 None:intergenic 30.0%
CCTTAAAAGATAACTGTCAA+GGG + chr4_1:77552688-77552707 Msa0574190:intron 30.0%
CTTAAAAGATAACTGTCAAG+GGG + chr4_1:77552689-77552708 Msa0574190:intron 30.0%
TTAAAAGATAACTGTCAAGG+GGG + chr4_1:77552690-77552709 Msa0574190:intron 30.0%
! GATTAGTAAGGCGTTATAAA+GGG - chr4_1:77552839-77552858 None:intergenic 30.0%
TTATCTATTGCTATCATAGC+AGG - chr4_1:77552878-77552897 None:intergenic 30.0%
AATGTGAAAAAAGCAAAGAG+GGG - chr4_1:77552960-77552979 None:intergenic 30.0%
GAAATGTGAAAAAAGCAAAG+AGG - chr4_1:77552962-77552981 None:intergenic 30.0%
CATACAAACAAAGGACAATT+TGG - chr4_1:77553037-77553056 None:intergenic 30.0%
! GTATTAATTAGGGGTATGTT+AGG + chr4_1:77553098-77553117 Msa0574190:intron 30.0%
TTGAAAAGGGGTTTACATTT+AGG + chr4_1:77553148-77553167 Msa0574190:intron 30.0%
TGAAAAGGGGTTTACATTTA+GGG + chr4_1:77553149-77553168 Msa0574190:intron 30.0%
GGGACAAAAATAAAGTCAAA+TGG + chr4_1:77553169-77553188 Msa0574190:intron 30.0%
CAGTGTTAAATTAAATGGAG+GGG - chr4_1:77553462-77553481 None:intergenic 30.0%
!!! TCATTACTGGCTTTTTTAGT+AGG - chr4_1:77553638-77553657 None:intergenic 30.0%
ACTAAAAAAGCCAGTAATGA+AGG + chr4_1:77553638-77553657 Msa0574190:intron 30.0%
ATCTAGATCCACAACTATTT+CGG - chr4_1:77553734-77553753 None:intergenic 30.0%
AATAGTTGTGGATCTAGATA+AGG + chr4_1:77553735-77553754 Msa0574190:intron 30.0%
!!! AGATTTTACTGTGTTGTTTG+TGG - chr4_1:77553830-77553849 None:intergenic 30.0%
!! AAAACCCAACCATTTTTAAG+AGG + chr4_1:77553928-77553947 Msa0574190:intron 30.0%
!! AAACCCAACCATTTTTAAGA+GGG + chr4_1:77553929-77553948 Msa0574190:intron 30.0%
TTACCCTCTTAAAAATGGTT+GGG - chr4_1:77553935-77553954 None:intergenic 30.0%
TTTACCCTCTTAAAAATGGT+TGG - chr4_1:77553936-77553955 None:intergenic 30.0%
TTTAAGAGGGTAAATGAAAG+AGG + chr4_1:77553942-77553961 Msa0574190:intron 30.0%
TTAAGAGGGTAAATGAAAGA+GGG + chr4_1:77553943-77553962 Msa0574190:intron 30.0%
! TAATTAACACCGTTAGTTTC+CGG - chr4_1:77553978-77553997 None:intergenic 30.0%
! AAACTAACGGTGTTAATTAG+AGG + chr4_1:77553979-77553998 Msa0574190:intron 30.0%
! AACTAACGGTGTTAATTAGA+GGG + chr4_1:77553980-77553999 Msa0574190:intron 30.0%
! TTTTGAATAAACCTTAAGGG+AGG + chr4_1:77554016-77554035 Msa0574190:intron 30.0%
!! TTGACTTGTACTCAATAGTT+TGG + chr4_1:77554431-77554450 Msa0574190:intron 30.0%
! CCAATATAAAGATGGTTTGT+GGG - chr4_1:77554608-77554627 None:intergenic 30.0%
ACCAATATAAAGATGGTTTG+TGG - chr4_1:77554609-77554628 None:intergenic 30.0%
TATATTTCTTGTCAACACCA+AGG + chr4_1:77554631-77554650 Msa0574190:CDS 30.0%
AAAAAGTTGCAACACGATTA+AGG - chr4_1:77554987-77555006 None:intergenic 30.0%
! AATCGTGTTGCAACTTTTTA+TGG + chr4_1:77554988-77555007 Msa0574190:intron 30.0%
! ATGATTACTGAGGCATTTAA+TGG - chr4_1:77555025-77555044 None:intergenic 30.0%
TAAATGCCTCAGTAATCATT+AGG + chr4_1:77555026-77555045 Msa0574190:intron 30.0%
!! GTCTAACTTATGCACTTTTT+AGG + chr4_1:77555072-77555091 Msa0574190:intron 30.0%
TTTAACTGTCATCTTCTATC+AGG - chr4_1:77555260-77555279 None:intergenic 30.0%
TGATAGAAGATGACAGTTAA+AGG + chr4_1:77555259-77555278 Msa0574190:exon 30.0%
TTCATATGGAGATATCAGAA+AGG + chr4_1:77555310-77555329 Msa0574190:three_prime_UTR 30.0%
TGAAAATATAGTTTGGGTGA+TGG + chr4_1:77555466-77555485 Msa0574190:three_prime_UTR 30.0%
TTACAACATTCTATTGAGGT+AGG + chr4_1:77555496-77555515 Msa0574190:three_prime_UTR 30.0%
TACAACATTCTATTGAGGTA+GGG + chr4_1:77555497-77555516 Msa0574190:three_prime_UTR 30.0%
TTTAGTACTTGTGCATATCT+TGG + chr4_1:77555528-77555547 Msa0574190:three_prime_UTR 30.0%
! CAGTTTTGCGAAACTTGAAA+CGG + chr4_1:77547374-77547393 Msa0574190:five_prime_UTR 35.0%
AAATTGAATCCCTAACCTCA+CGG - chr4_1:77547563-77547582 None:intergenic 35.0%
AAGCTATCTTGGAGAACTTA+TGG + chr4_1:77547772-77547791 Msa0574190:intron 35.0%
GAACTGACAGAAACAACTTA+AGG - chr4_1:77547828-77547847 None:intergenic 35.0%
CAAAGAAATCCCTGAAACTA+AGG - chr4_1:77547915-77547934 None:intergenic 35.0%
TTTCAGGGATTTCTTTGACT+TGG + chr4_1:77547918-77547937 Msa0574190:intron 35.0%
!! CATTGGTGCTATTAGTTCAA+AGG - chr4_1:77548009-77548028 None:intergenic 35.0%
!! ACTTGTTGTCAATTGCTGAT+CGG - chr4_1:77548082-77548101 None:intergenic 35.0%
TTGTCAAATAGCAGCTATAG+AGG - chr4_1:77548162-77548181 None:intergenic 35.0%
CATGTATATCGGAACAATAG+TGG + chr4_1:77548199-77548218 Msa0574190:intron 35.0%
ACATACCATAGAGCTAGTAT+TGG + chr4_1:77548289-77548308 Msa0574190:intron 35.0%
!! ATGAACCAATACTAGCTCTA+TGG - chr4_1:77548297-77548316 None:intergenic 35.0%
!!! ATTGGTTCATTTTTTTCCCC+TGG + chr4_1:77548307-77548326 Msa0574190:intron 35.0%
!!! TTCATTTTTTTCCCCTGGTT+TGG + chr4_1:77548312-77548331 Msa0574190:intron 35.0%
TTTCTTCATATGGAGGAGTT+TGG + chr4_1:77548354-77548373 Msa0574190:intron 35.0%
TGAATTTGAATACCTAAGCC+TGG + chr4_1:77548465-77548484 Msa0574190:intron 35.0%
GCATCAAAAAAGTTCATGAC+CGG + chr4_1:77548607-77548626 Msa0574190:intron 35.0%
CAAACACATATACACCAAGA+TGG - chr4_1:77548829-77548848 None:intergenic 35.0%
GTATGAAAGTTGGAAAGTAG+AGG + chr4_1:77548939-77548958 Msa0574190:intron 35.0%
!!! CATACCCTTTTTTGGCAAAT+TGG + chr4_1:77548963-77548982 Msa0574190:intron 35.0%
CTTCACCAATTTGCCAAAAA+AGG - chr4_1:77548971-77548990 None:intergenic 35.0%
!!! CTTTTTTGGCAAATTGGTGA+AGG + chr4_1:77548969-77548988 Msa0574190:intron 35.0%
!! ATCCTTCCTTTGATTTTTCC+TGG - chr4_1:77549188-77549207 None:intergenic 35.0%
AAATTCTGTTTCAGAAGCAG+AGG + chr4_1:77549361-77549380 Msa0574190:intron 35.0%
TAAAGGTTTACGGCTACAAA+TGG + chr4_1:77549435-77549454 Msa0574190:intron 35.0%
CAAGCTCTCTTATTCTTCAA+AGG - chr4_1:77549496-77549515 None:intergenic 35.0%
! CTTTGAAGAATAAGAGAGCT+TGG + chr4_1:77549494-77549513 Msa0574190:intron 35.0%
CGAAAGGAGAAAGTGATTAA+GGG - chr4_1:77549551-77549570 None:intergenic 35.0%
TCGAAAGGAGAAAGTGATTA+AGG - chr4_1:77549552-77549571 None:intergenic 35.0%
TTTATCACTAAGAGGAATGC+TGG + chr4_1:77549579-77549598 Msa0574190:intron 35.0%
AAAATAGAACCCACACAAAG+TGG - chr4_1:77549671-77549690 None:intergenic 35.0%
TTTAACAAATACCCCGTTGA+TGG + chr4_1:77549828-77549847 Msa0574190:intron 35.0%
GAGTCTGTGATCATATTCAT+AGG + chr4_1:77549934-77549953 Msa0574190:intron 35.0%
!! TGCTGTTTCTGTTATTGTTG+TGG + chr4_1:77549959-77549978 Msa0574190:intron 35.0%
! TGTTTCTGTTATTGTTGTGG+TGG + chr4_1:77549962-77549981 Msa0574190:intron 35.0%
TAATGATGGTAAGAGAAGTG+TGG + chr4_1:77550049-77550068 Msa0574190:intron 35.0%
CTATGAGATTGATCAGATCA+TGG + chr4_1:77550092-77550111 Msa0574190:intron 35.0%
GTCAGAGAAATCAACAGTTA+GGG + chr4_1:77550143-77550162 Msa0574190:intron 35.0%
TCAGAGAAATCAACAGTTAG+GGG + chr4_1:77550144-77550163 Msa0574190:intron 35.0%
TATACTACTGACCGTATTGA+CGG - chr4_1:77550330-77550349 None:intergenic 35.0%
TCAATTAGGACTTGCCATTA+AGG - chr4_1:77550367-77550386 None:intergenic 35.0%
!! CCAAGGGGTTTTAATCAATT+AGG - chr4_1:77550381-77550400 None:intergenic 35.0%
CCTAATTGATTAAAACCCCT+TGG + chr4_1:77550378-77550397 Msa0574190:intron 35.0%
GGTATGGTACAATAAGCAAT+TGG - chr4_1:77550424-77550443 None:intergenic 35.0%
! AGGATTAAGTGATGGAGATA+TGG + chr4_1:77550524-77550543 Msa0574190:intron 35.0%
ATGTAGAAGGTGATTGCAAT+TGG - chr4_1:77551006-77551025 None:intergenic 35.0%
! TGGTTCATTCATTTTGTGGA+TGG + chr4_1:77551033-77551052 Msa0574190:CDS 35.0%
TCGACACTTTATTGATCTTG+GGG - chr4_1:77551159-77551178 None:intergenic 35.0%
GGGTAATTCAGTCTAGAAAA+AGG + chr4_1:77551450-77551469 Msa0574190:intron 35.0%
!! AGGATTAACTACTTTTCGGT+CGG - chr4_1:77551477-77551496 None:intergenic 35.0%
!! TTCGAGTTGCCTTTATACAA+TGG + chr4_1:77551506-77551525 Msa0574190:intron 35.0%
GTTGCCTTTATACAATGGTA+TGG + chr4_1:77551511-77551530 Msa0574190:intron 35.0%
AGGACCATACCATTGTATAA+AGG - chr4_1:77551518-77551537 None:intergenic 35.0%
ATGGTATGGTCCTATAACTT+TGG + chr4_1:77551525-77551544 Msa0574190:intron 35.0%
! GGGTAATTTTGTCCAGAAAA+AGG + chr4_1:77551596-77551615 Msa0574190:intron 35.0%
!! CTTTTGATTGGACCTTTTTC+TGG - chr4_1:77551611-77551630 None:intergenic 35.0%
GTGTAGATTATGTTACCTAC+TGG + chr4_1:77551673-77551692 Msa0574190:intron 35.0%
AAGAGTTAAACTTCTTGGTC+AGG + chr4_1:77551735-77551754 Msa0574190:intron 35.0%
AATCCCAATCAAGAAGATGA+AGG - chr4_1:77551784-77551803 None:intergenic 35.0%
! TTGGGATTTTCATGTCATCA+TGG + chr4_1:77551796-77551815 Msa0574190:CDS 35.0%
! GATTTTCATGTCATCATGGT+TGG + chr4_1:77551800-77551819 Msa0574190:CDS 35.0%
TGGCTAGAAATTCACCTTTA+AGG + chr4_1:77551974-77551993 Msa0574190:intron 35.0%
!! TCACCTTTAAGGTGAATAAG+TGG + chr4_1:77551985-77552004 Msa0574190:intron 35.0%
!! CACCTTTAAGGTGAATAAGT+GGG + chr4_1:77551986-77552005 Msa0574190:intron 35.0%
!! ACCTTTAAGGTGAATAAGTG+GGG + chr4_1:77551987-77552006 Msa0574190:intron 35.0%
GGACAATGCATAATATATGC+AGG - chr4_1:77552036-77552055 None:intergenic 35.0%
AATGATGGCTACTTCTTTGA+AGG - chr4_1:77552192-77552211 None:intergenic 35.0%
TTATGACAATTTCTGACGTG+TGG + chr4_1:77552582-77552601 Msa0574190:intron 35.0%
AAACAATTCTCAGCCTTACA+TGG - chr4_1:77552636-77552655 None:intergenic 35.0%
CTGATTAGTATTCAAGCTCT+TGG + chr4_1:77552657-77552676 Msa0574190:intron 35.0%
!! GACAGTTATCTTTTAAGGGA+GGG - chr4_1:77552686-77552705 None:intergenic 35.0%
!! TGACAGTTATCTTTTAAGGG+AGG - chr4_1:77552687-77552706 None:intergenic 35.0%
CCCTTAAAAGATAACTGTCA+AGG + chr4_1:77552687-77552706 Msa0574190:intron 35.0%
! CCCTTGACAGTTATCTTTTA+AGG - chr4_1:77552691-77552710 None:intergenic 35.0%
! GGATTAGTAAGGCGTTATAA+AGG - chr4_1:77552840-77552859 None:intergenic 35.0%
TCAAATGGGTGCTTAGATAT+AGG + chr4_1:77553184-77553203 Msa0574190:intron 35.0%
CAAATGGGTGCTTAGATATA+GGG + chr4_1:77553185-77553204 Msa0574190:intron 35.0%
GTGGATAAACTGAGTAGTAT+GGG - chr4_1:77553272-77553291 None:intergenic 35.0%
ATTTATGAAGACCTCAAGAG+AGG - chr4_1:77553367-77553386 None:intergenic 35.0%
TGTTAAATTAAATGGAGGGG+AGG - chr4_1:77553459-77553478 None:intergenic 35.0%
AAATAAAAACCCAACCCAGA+GGG - chr4_1:77553537-77553556 None:intergenic 35.0%
AAAATAAAAACCCAACCCAG+AGG - chr4_1:77553538-77553557 None:intergenic 35.0%
ACCATGAAAGTTGAATGGAA+GGG - chr4_1:77553597-77553616 None:intergenic 35.0%
AACCATGAAAGTTGAATGGA+AGG - chr4_1:77553598-77553617 None:intergenic 35.0%
GAAGAATGATAGACCTAATG+CGG + chr4_1:77553690-77553709 Msa0574190:intron 35.0%
TAAGAGGGTAAATGAAAGAG+GGG + chr4_1:77553944-77553963 Msa0574190:intron 35.0%
GTTGATTAACCGGAAACTAA+CGG + chr4_1:77553966-77553985 Msa0574190:intron 35.0%
! ACTAACGGTGTTAATTAGAG+GGG + chr4_1:77553981-77554000 Msa0574190:intron 35.0%
TTAAACACAAACCTCCCTTA+AGG - chr4_1:77554030-77554049 None:intergenic 35.0%
CTAAACTCTATCAATGTCAC+TGG + chr4_1:77554122-77554141 Msa0574190:intron 35.0%
AGAATTCTATCACTTCAACC+AGG - chr4_1:77554171-77554190 None:intergenic 35.0%
AGAATTCTGATCTTTGTTGC+TGG + chr4_1:77554183-77554202 Msa0574190:intron 35.0%
CCCACAAACCATCTTTATAT+TGG + chr4_1:77554605-77554624 Msa0574190:CDS 35.0%
TTAGGCCAAACTTATCAGTA+CGG + chr4_1:77554660-77554679 Msa0574190:CDS 35.0%
TACACTGTAGAACTAAAAGC+AGG + chr4_1:77554729-77554748 Msa0574190:intron 35.0%
GTGATATTTATGGCTCAGTT+GGG - chr4_1:77554902-77554921 None:intergenic 35.0%
TGTGATATTTATGGCTCAGT+TGG - chr4_1:77554903-77554922 None:intergenic 35.0%
! ACTGAGGCATTTAATGGTTA+TGG - chr4_1:77555019-77555038 None:intergenic 35.0%
!!! TATGCACTTTTTAGGTTGCA+AGG + chr4_1:77555080-77555099 Msa0574190:intron 35.0%
! TTTGCAGAAATTGTCGTTTC+TGG + chr4_1:77555170-77555189 Msa0574190:intron 35.0%
AAGCAATGTGTTGCAAATAC+AGG + chr4_1:77555339-77555358 Msa0574190:three_prime_UTR 35.0%
! GTTTTGTGTAACGTTCATTC+CGG + chr4_1:77555415-77555434 Msa0574190:three_prime_UTR 35.0%
AGGGTTACAACATTCTATTG+AGG + chr4_1:77555492-77555511 Msa0574190:three_prime_UTR 35.0%
! TACGGTGGTTTTCATTTCAT+TGG + chr4_1:77555624-77555643 Msa0574190:three_prime_UTR 35.0%
!! GTTTTGAACGGAGTCTACAA+CGG + chr4_1:77547311-77547330 Msa0574190:five_prime_UTR 40.0%
!! CGTTTCAAGTTTCGCAAAAC+TGG - chr4_1:77547376-77547395 None:intergenic 40.0%
TTATCGTCGACCATAACTTG+AGG - chr4_1:77547420-77547439 None:intergenic 40.0%
TAAGCACTTGTGTGACTGTT+CGG - chr4_1:77547853-77547872 None:intergenic 40.0%
AACTAAGGGACTGTTTGGAT+TGG - chr4_1:77547900-77547919 None:intergenic 40.0%
CAAACAGTCCCTTAGTTTCA+GGG + chr4_1:77547903-77547922 Msa0574190:intron 40.0%
CTAGAGCTAAGAACTAGCAT+TGG - chr4_1:77548026-77548045 None:intergenic 40.0%
CAAGTGATCGCGAAAAATAG+CGG + chr4_1:77548097-77548116 Msa0574190:intron 40.0%
TCGCAAGTTTCTTCATATGG+AGG + chr4_1:77548347-77548366 Msa0574190:intron 40.0%
TGAATAGGACAACTAATGCC+AGG - chr4_1:77548486-77548505 None:intergenic 40.0%
TTTCCAAAGTTGTTCAGAGC+TGG + chr4_1:77548584-77548603 Msa0574190:CDS 40.0%
TTCCAAAGTTGTTCAGAGCT+GGG + chr4_1:77548585-77548604 Msa0574190:CDS 40.0%
CAAAAAAGTTCATGACCGGA+TGG + chr4_1:77548611-77548630 Msa0574190:intron 40.0%
AGAAAGAAATGCTCACCATC+CGG - chr4_1:77548629-77548648 None:intergenic 40.0%
!! ACAAAAGCACAGTTTTCTGC+AGG - chr4_1:77548740-77548759 None:intergenic 40.0%
!!! GTAGAGGACATACCCTTTTT+TGG + chr4_1:77548955-77548974 Msa0574190:intron 40.0%
AGTCAGAGAGAAAATAGGAG+GGG - chr4_1:77549053-77549072 None:intergenic 40.0%
GAGTCAGAGAGAAAATAGGA+GGG - chr4_1:77549054-77549073 None:intergenic 40.0%
GTTCGAGTCAGAGAGAAAAT+AGG - chr4_1:77549058-77549077 None:intergenic 40.0%
GCAGACATTGAGAATGTTAC+AGG - chr4_1:77549117-77549136 None:intergenic 40.0%
TGATGTGAAAGTAAAGGTCC+TGG - chr4_1:77549141-77549160 None:intergenic 40.0%
! TGATTTTTCCTGGCAGAAGA+CGG - chr4_1:77549178-77549197 None:intergenic 40.0%
CTTCTGCCAGGAAAAATCAA+AGG + chr4_1:77549179-77549198 Msa0574190:intron 40.0%
TGCCAGGAAAAATCAAAGGA+AGG + chr4_1:77549183-77549202 Msa0574190:intron 40.0%
!! ATCGACAACATTGACTTTGC+TGG + chr4_1:77549242-77549261 Msa0574190:intron 40.0%
! CATTTTCCACCACTTTGTGT+GGG + chr4_1:77549659-77549678 Msa0574190:intron 40.0%
GAGAATTATTCACGCTGTGA+TGG + chr4_1:77549894-77549913 Msa0574190:intron 40.0%
! GTAAGAGAAGTGTGGAAGAT+TGG + chr4_1:77550057-77550076 Msa0574190:intron 40.0%
GGTCAGAGAAATCAACAGTT+AGG + chr4_1:77550142-77550161 Msa0574190:intron 40.0%
CAGAGAAATCAACAGTTAGG+GGG + chr4_1:77550145-77550164 Msa0574190:intron 40.0%
ACTACTTAACTCCCCAGATT+TGG - chr4_1:77550235-77550254 None:intergenic 40.0%
ACATCAGATCTAACGGTTGT+TGG + chr4_1:77550267-77550286 Msa0574190:intron 40.0%
ATCTAACGGTTGTTGGTACA+AGG + chr4_1:77550274-77550293 Msa0574190:intron 40.0%
TGTTAAGGCAACAAACCATG+AGG - chr4_1:77550651-77550670 None:intergenic 40.0%
CAATCACCTTCTACATTACC+TGG + chr4_1:77551010-77551029 Msa0574190:CDS 40.0%
CACAAAATGAATGAACCACC+AGG - chr4_1:77551031-77551050 None:intergenic 40.0%
! CTGGTGGTTCATTCATTTTG+TGG + chr4_1:77551029-77551048 Msa0574190:CDS 40.0%
TCTCCGATCTATGTTCATCT+TGG + chr4_1:77551063-77551082 Msa0574190:CDS 40.0%
TGGTAAGTGCTTCTGTTGTA+TGG + chr4_1:77551098-77551117 Msa0574190:intron 40.0%
ACACTTTATTGATCTTGGGG+GGG - chr4_1:77551156-77551175 None:intergenic 40.0%
GACACTTTATTGATCTTGGG+GGG - chr4_1:77551157-77551176 None:intergenic 40.0%
CGACACTTTATTGATCTTGG+GGG - chr4_1:77551158-77551177 None:intergenic 40.0%
GGCAACTCGAAAGTTAACTA+AGG - chr4_1:77551497-77551516 None:intergenic 40.0%
TAAACTTCTTGGTCAGGTCT+TGG + chr4_1:77551741-77551760 Msa0574190:intron 40.0%
AAGATATTGCCAAACACACC+TGG - chr4_1:77551924-77551943 None:intergenic 40.0%
!! AAGGTGAATTTCTAGCCACT+AGG - chr4_1:77551972-77551991 None:intergenic 40.0%
ACCCCACTTATTCACCTTAA+AGG - chr4_1:77551991-77552010 None:intergenic 40.0%
GAGCTTAGCTCAGTTTGTAA+GGG - chr4_1:77552057-77552076 None:intergenic 40.0%
TGAGCTTAGCTCAGTTTGTA+AGG - chr4_1:77552058-77552077 None:intergenic 40.0%
TACAAACTGAGCTAAGCTCA+TGG + chr4_1:77552058-77552077 Msa0574190:intron 40.0%
!! TGTGAATTTTGATCTGTGGC+AGG - chr4_1:77552167-77552186 None:intergenic 40.0%
!! GGCTTGTGAATTTTGATCTG+TGG - chr4_1:77552171-77552190 None:intergenic 40.0%
TAGAGCCCAATGTCAAAATG+TGG + chr4_1:77552355-77552374 Msa0574190:intron 40.0%
AGAGCCCAATGTCAAAATGT+GGG + chr4_1:77552356-77552375 Msa0574190:intron 40.0%
! TTTTCTGCATGATCCAGAAC+TGG - chr4_1:77552382-77552401 None:intergenic 40.0%
AAACGTGTCTTGTGTACTCT+AGG + chr4_1:77552411-77552430 Msa0574190:intron 40.0%
TATGTGGTGTAGTTATAGGG+AGG + chr4_1:77552557-77552576 Msa0574190:intron 40.0%
! TGCTTGGTGGAGAATTTATG+TGG - chr4_1:77552726-77552745 None:intergenic 40.0%
TTGCTATCATAGCAGGTTGT+CGG - chr4_1:77552871-77552890 None:intergenic 40.0%
TAGATAAGTATTCGGGCACT+TGG + chr4_1:77552891-77552910 Msa0574190:intron 40.0%
AGATAAGTATTCGGGCACTT+GGG + chr4_1:77552892-77552911 Msa0574190:intron 40.0%
!! AGGGAGTAGCTTTTAAGAGA+GGG - chr4_1:77552921-77552940 None:intergenic 40.0%
! GGTGGAGTATTTAAGTGTCT+TGG - chr4_1:77553243-77553262 None:intergenic 40.0%
GGTGGATAAACTGAGTAGTA+TGG - chr4_1:77553273-77553292 None:intergenic 40.0%
GTGTTTGTGCAACTCTTTGA+GGG + chr4_1:77553301-77553320 Msa0574190:intron 40.0%
TGTTTGTGCAACTCTTTGAG+GGG + chr4_1:77553302-77553321 Msa0574190:intron 40.0%
ATGAAAGTTGAATGGAAGGG+AGG - chr4_1:77553594-77553613 None:intergenic 40.0%
TCCCTTCCATTCAACTTTCA+TGG + chr4_1:77553593-77553612 Msa0574190:intron 40.0%
CCACAACCATGAAAGTTGAA+TGG - chr4_1:77553602-77553621 None:intergenic 40.0%
CCATTCAACTTTCATGGTTG+TGG + chr4_1:77553599-77553618 Msa0574190:intron 40.0%
AAACTGAAGGCCTTCATTAC+TGG - chr4_1:77553651-77553670 None:intergenic 40.0%
GTTGTGGATCTAGATAAGGT+TGG + chr4_1:77553739-77553758 Msa0574190:intron 40.0%
AGATTAGCGACTCAGAAAAC+AGG - chr4_1:77553880-77553899 None:intergenic 40.0%
! TGAAAGAGGGGTTGATTAAC+CGG + chr4_1:77553956-77553975 Msa0574190:intron 40.0%
GGATCACAGTATAAGGAACA+TGG - chr4_1:77554150-77554169 None:intergenic 40.0%
TGTTCCTTATACTGTGATCC+TGG + chr4_1:77554150-77554169 Msa0574190:intron 40.0%
TCAACCAGGATCACAGTATA+AGG - chr4_1:77554157-77554176 None:intergenic 40.0%
CTATGTGCCAAAGTCCTAAT+GGG - chr4_1:77554243-77554262 None:intergenic 40.0%
ACTATGTGCCAAAGTCCTAA+TGG - chr4_1:77554244-77554263 None:intergenic 40.0%
AGTACAAGTCAACAGCTAGA+AGG - chr4_1:77554423-77554442 None:intergenic 40.0%
! GCTGTTTCACAGACTTATTC+TGG + chr4_1:77554554-77554573 Msa0574190:intron 40.0%
! ACAGACTTATTCTGGAGATG+AGG + chr4_1:77554562-77554581 Msa0574190:intron 40.0%
TCAACACCAAGGATGTCATT+AGG + chr4_1:77554642-77554661 Msa0574190:CDS 40.0%
TAGGCCAAACTTATCAGTAC+GGG + chr4_1:77554661-77554680 Msa0574190:CDS 40.0%
TTATCAGTACGGGAAGGAAT+TGG + chr4_1:77554671-77554690 Msa0574190:CDS 40.0%
TCGCGTACTGTTTATACTTG+CGG + chr4_1:77554943-77554962 Msa0574190:intron 40.0%
CTTGCACCTAATGATTACTG+AGG - chr4_1:77555035-77555054 None:intergenic 40.0%
AAGTGCATAAGTTAGACCAG+AGG - chr4_1:77555069-77555088 None:intergenic 40.0%
TCAGGTCTACTTATTTCCAC+CGG - chr4_1:77555242-77555261 None:intergenic 40.0%
ATGTGTTGCAAATACAGGCA+TGG + chr4_1:77555344-77555363 Msa0574190:three_prime_UTR 40.0%
! TATAGTTTGGGTGATGGTAC+AGG + chr4_1:77555472-77555491 Msa0574190:three_prime_UTR 40.0%
! ATAGTTTGGGTGATGGTACA+GGG + chr4_1:77555473-77555492 Msa0574190:three_prime_UTR 40.0%
AGTACTTGTGCATATCTTGG+CGG + chr4_1:77555531-77555550 Msa0574190:three_prime_UTR 40.0%
TGCAGAAGAAGCGAAGCAAA+AGG + chr4_1:77547340-77547359 Msa0574190:five_prime_UTR 45.0%
GGTTCTTCCTCCTCAAGTTA+TGG + chr4_1:77547407-77547426 Msa0574190:CDS 45.0%
!! AAGGTTTGGAAGCATTGGAG+TGG - chr4_1:77547509-77547528 None:intergenic 45.0%
! CGAAGAAGGTTTGGAAGCAT+TGG - chr4_1:77547514-77547533 None:intergenic 45.0%
AAGCACTTGTGTGACTGTTC+GGG - chr4_1:77547852-77547871 None:intergenic 45.0%
CCTGAAACTAAGGGACTGTT+TGG - chr4_1:77547905-77547924 None:intergenic 45.0%
CCAAACAGTCCCTTAGTTTC+AGG + chr4_1:77547902-77547921 Msa0574190:intron 45.0%
CGATCAGCAATTGACAACAC+TGG - chr4_1:77548059-77548078 None:intergenic 45.0%
TTACACACAACGATGGTGCT+AGG + chr4_1:77548135-77548154 Msa0574190:intron 45.0%
! TACACACAACGATGGTGCTA+GGG + chr4_1:77548136-77548155 Msa0574190:intron 45.0%
AGAGAGAAAATAGGAGGGGT+CGG - chr4_1:77549049-77549068 None:intergenic 45.0%
CGAGTCAGAGAGAAAATAGG+AGG - chr4_1:77549055-77549074 None:intergenic 45.0%
CAACGCTGATCTAATTGCAC+GGG - chr4_1:77549094-77549113 None:intergenic 45.0%
GCAACGCTGATCTAATTGCA+CGG - chr4_1:77549095-77549114 None:intergenic 45.0%
! GCATTTTCCACCACTTTGTG+TGG + chr4_1:77549658-77549677 Msa0574190:intron 45.0%
ATAGAACCCACACAAAGTGG+TGG - chr4_1:77549668-77549687 None:intergenic 45.0%
! AACAAATACCCCGTTGATGG+AGG + chr4_1:77549831-77549850 Msa0574190:intron 45.0%
AAATTTGGCCTCCATCAACG+GGG - chr4_1:77549842-77549861 None:intergenic 45.0%
CAAATTTGGCCTCCATCAAC+GGG - chr4_1:77549843-77549862 None:intergenic 45.0%
GCAAATTTGGCCTCCATCAA+CGG - chr4_1:77549844-77549863 None:intergenic 45.0%
AGAACCTCTCGCTGCAAATT+TGG - chr4_1:77549857-77549876 None:intergenic 45.0%
TGTTATTGTTGTGGTGGCTG+TGG + chr4_1:77549968-77549987 Msa0574190:intron 45.0%
GTTACTGCAGCTGCAAGTAA+AGG + chr4_1:77550021-77550040 Msa0574190:intron 45.0%
TGATCAGATCATGGCGAGAT+TGG + chr4_1:77550101-77550120 Msa0574190:intron 45.0%
AGAAATCAACAGTTAGGGGG+AGG + chr4_1:77550148-77550167 Msa0574190:intron 45.0%
!! GAGGAGCAGTTTTGGTAGAT+GGG + chr4_1:77550167-77550186 Msa0574190:intron 45.0%
!! AGGAGCAGTTTTGGTAGATG+GGG + chr4_1:77550168-77550187 Msa0574190:intron 45.0%
GTTGTTGGTACAAGGTGAAC+TGG + chr4_1:77550282-77550301 Msa0574190:intron 45.0%
GACATTCTATGCAAGCTTGC+AGG - chr4_1:77550596-77550615 None:intergenic 45.0%
TCACCTTCTACATTACCTGG+TGG + chr4_1:77551013-77551032 Msa0574190:CDS 45.0%
GAACCACCAGGTAATGTAGA+AGG - chr4_1:77551019-77551038 None:intergenic 45.0%
ACTTTATTGATCTTGGGGGG+GGG - chr4_1:77551154-77551173 None:intergenic 45.0%
CACTTTATTGATCTTGGGGG+GGG - chr4_1:77551155-77551174 None:intergenic 45.0%
ATGTTACCTACTGGATGCCA+TGG + chr4_1:77551682-77551701 Msa0574190:intron 45.0%
ATTAGTGCTGCGATATCACC+AGG + chr4_1:77551903-77551922 Msa0574190:intron 45.0%
TGCATAATATATGCAGGGGC+CGG - chr4_1:77552030-77552049 None:intergenic 45.0%
ATCATTCGACATCCACGTGT+GGG + chr4_1:77552206-77552225 Msa0574190:CDS 45.0%
AATGCATATTCTCCCACACG+TGG - chr4_1:77552221-77552240 None:intergenic 45.0%
ACGTGTGGGAGAATATGCAT+TGG + chr4_1:77552220-77552239 Msa0574190:CDS 45.0%
CGTGTGGGAGAATATGCATT+GGG + chr4_1:77552221-77552240 Msa0574190:CDS 45.0%
!! CTGGCCCACATTTTGACATT+GGG - chr4_1:77552363-77552382 None:intergenic 45.0%
!! ACTGGCCCACATTTTGACAT+TGG - chr4_1:77552364-77552383 None:intergenic 45.0%
GGTGGAGAATTTATGTGGCT+TGG - chr4_1:77552721-77552740 None:intergenic 45.0%
AACAGAGTAGTATGGGTGCT+TGG - chr4_1:77552742-77552761 None:intergenic 45.0%
CACCCATACTACTCTGTTGT+GGG + chr4_1:77552744-77552763 Msa0574190:intron 45.0%
GTCCCACAACAGAGTAGTAT+GGG - chr4_1:77552749-77552768 None:intergenic 45.0%
AGTCCCACAACAGAGTAGTA+TGG - chr4_1:77552750-77552769 None:intergenic 45.0%
ACTACTCTGTTGTGGGACTT+AGG + chr4_1:77552751-77552770 Msa0574190:intron 45.0%
!! GTGGTGCTATGATAGAGACT+TGG - chr4_1:77552789-77552808 None:intergenic 45.0%
! CGGTTCGGAAAGGATTAGTA+AGG - chr4_1:77552851-77552870 None:intergenic 45.0%
! ATCATAGCAGGTTGTCGGTT+CGG - chr4_1:77552866-77552885 None:intergenic 45.0%
GATAAGTATTCGGGCACTTG+GGG + chr4_1:77552893-77552912 Msa0574190:intron 45.0%
!! GAGGGAGTAGCTTTTAAGAG+AGG - chr4_1:77552922-77552941 None:intergenic 45.0%
GCAAAGAGGGGTTACATGTA+GGG - chr4_1:77552948-77552967 None:intergenic 45.0%
AGCAAAGAGGGGTTACATGT+AGG - chr4_1:77552949-77552968 None:intergenic 45.0%
TGGGTGCTTAGATATAGGGA+CGG + chr4_1:77553189-77553208 Msa0574190:intron 45.0%
TGCTTAGATATAGGGACGGA+GGG + chr4_1:77553193-77553212 Msa0574190:intron 45.0%
ACGGAGGGAGTAGTTATCAA+GGG + chr4_1:77553208-77553227 Msa0574190:intron 45.0%
ACTGAGTAGTATGGGATGCT+CGG - chr4_1:77553264-77553283 None:intergenic 45.0%
CAAAGAGTTGCACAAACACG+TGG - chr4_1:77553300-77553319 None:intergenic 45.0%
CGTGTTTGTGCAACTCTTTG+AGG + chr4_1:77553300-77553319 Msa0574190:intron 45.0%
AATTACACTCGCCTCTCTTG+AGG + chr4_1:77553353-77553372 Msa0574190:intron 45.0%
AGGAAAACGATGACCGCATT+AGG - chr4_1:77553706-77553725 None:intergenic 45.0%
TTGTTGCTGGTGAGCTATAC+AGG + chr4_1:77554196-77554215 Msa0574190:intron 45.0%
! CCAAAGTCCTAATGGGCAAT+GGG - chr4_1:77554236-77554255 None:intergenic 45.0%
! GGCACATAGTTGATGCTTGT+TGG + chr4_1:77554254-77554273 Msa0574190:intron 45.0%
GAATCATGAGTGAGCCCTTA+TGG + chr4_1:77554453-77554472 Msa0574190:intron 45.0%
GTTTGGCCTAATGACATCCT+TGG - chr4_1:77554651-77554670 None:intergenic 45.0%
! CCTTCCCGTACTGATAAGTT+TGG - chr4_1:77554668-77554687 None:intergenic 45.0%
CCAAACTTATCAGTACGGGA+AGG + chr4_1:77554665-77554684 Msa0574190:CDS 45.0%
!!! TCTTTTTGGAGCTTCCTCTG+TGG + chr4_1:77554791-77554810 Msa0574190:intron 45.0%
! ATTTTACTGCACCTCCACAG+AGG - chr4_1:77554808-77554827 None:intergenic 45.0%
! CTGTGGAGGTGCAGTAAAAT+TGG + chr4_1:77554808-77554827 Msa0574190:intron 45.0%
! GCAGAAATTGTCGTTTCTGG+AGG + chr4_1:77555173-77555192 Msa0574190:intron 45.0%
!! CATGTGAATCAAGCGTCGAT+AGG - chr4_1:77555217-77555236 None:intergenic 45.0%
GACGCTTGATTCACATGTTC+CGG + chr4_1:77555220-77555239 Msa0574190:CDS 45.0%
!! ATCGATCTAACACTGGTTCG+CGG - chr4_1:77555385-77555404 None:intergenic 45.0%
ACTTGAAACGGCGTCGTTGA+TGG + chr4_1:77547386-77547405 Msa0574190:exon 50.0%
TCGTCGACCATAACTTGAGG+AGG - chr4_1:77547417-77547436 None:intergenic 50.0%
GGAGGAAGACGAAGAAGGTT+TGG - chr4_1:77547523-77547542 None:intergenic 50.0%
GGACAACTAATGCCAGGCTT+AGG - chr4_1:77548480-77548499 None:intergenic 50.0%
!! TGCCCAGCTCTGAACAACTT+TGG - chr4_1:77548590-77548609 None:intergenic 50.0%
CTGATCTAATTGCACGGGTG+GGG - chr4_1:77549089-77549108 None:intergenic 50.0%
GCTGATCTAATTGCACGGGT+GGG - chr4_1:77549090-77549109 None:intergenic 50.0%
ACATTCTCAATGTCTGCGCC+AGG + chr4_1:77549120-77549139 Msa0574190:intron 50.0%
! TTTTCCTGGCAGAAGACGGT+AGG - chr4_1:77549174-77549193 None:intergenic 50.0%
!! AGGTTCTAAGAGAATGCGCG+TGG + chr4_1:77549870-77549889 Msa0574190:intron 50.0%
CAGCTGCAGTAACACAACCT+TGG - chr4_1:77550014-77550033 None:intergenic 50.0%
TCAGATCATGGCGAGATTGG+TGG + chr4_1:77550104-77550123 Msa0574190:intron 50.0%
!! GGAGGAGCAGTTTTGGTAGA+TGG + chr4_1:77550166-77550185 Msa0574190:intron 50.0%
!! GGAGCAGTTTTGGTAGATGG+GGG + chr4_1:77550169-77550188 Msa0574190:intron 50.0%
!! GAGCAGTTTTGGTAGATGGG+GGG + chr4_1:77550170-77550189 Msa0574190:intron 50.0%
! GCACGGACATGGTTTTCAAC+TGG - chr4_1:77550629-77550648 None:intergenic 50.0%
AAAACCATGTCCGTGCCTCA+TGG + chr4_1:77550633-77550652 Msa0574190:intron 50.0%
AGGCAACAAACCATGAGGCA+CGG - chr4_1:77550646-77550665 None:intergenic 50.0%
TTTATTGATCTTGGGGGGGG+GGG - chr4_1:77551152-77551171 None:intergenic 50.0%
CTTTATTGATCTTGGGGGGG+GGG - chr4_1:77551153-77551172 None:intergenic 50.0%
ATGCTACCATGGCATCCAGT+AGG - chr4_1:77551691-77551710 None:intergenic 50.0%
GCGATATCACCAGGTGTGTT+TGG + chr4_1:77551912-77551931 Msa0574190:intron 50.0%
!! TTTTGGGTCAAGCAGCCTAG+TGG + chr4_1:77551954-77551973 Msa0574190:intron 50.0%
! AGGTGAATAAGTGGGGTGTC+CGG + chr4_1:77551994-77552013 Msa0574190:intron 50.0%
CATAATATATGCAGGGGCCG+GGG - chr4_1:77552028-77552047 None:intergenic 50.0%
GCATAATATATGCAGGGGCC+GGG - chr4_1:77552029-77552048 None:intergenic 50.0%
CACACGTGGATGTCGAATGA+TGG - chr4_1:77552207-77552226 None:intergenic 50.0%
CATCATTCGACATCCACGTG+TGG + chr4_1:77552205-77552224 Msa0574190:CDS 50.0%
AACCTGAAGGACAACAGACG+AGG - chr4_1:77552255-77552274 None:intergenic 50.0%
GTCAAAATGTGGGCCAGTTC+TGG + chr4_1:77552366-77552385 Msa0574190:intron 50.0%
AGAGTAGTATGGGTGCTTGG+TGG - chr4_1:77552739-77552758 None:intergenic 50.0%
GCACCCATACTACTCTGTTG+TGG + chr4_1:77552743-77552762 Msa0574190:intron 50.0%
CGTTATAAAGGGCCAACCAC+GGG - chr4_1:77552828-77552847 None:intergenic 50.0%
GCGTTATAAAGGGCCAACCA+CGG - chr4_1:77552829-77552848 None:intergenic 50.0%
AGAGGGGTTACATGTAGGGA+CGG - chr4_1:77552944-77552963 None:intergenic 50.0%
GTGCTTAGATATAGGGACGG+AGG + chr4_1:77553192-77553211 Msa0574190:intron 50.0%
GACGGAGGGAGTAGTTATCA+AGG + chr4_1:77553207-77553226 Msa0574190:intron 50.0%
CGGAGGGAGTAGTTATCAAG+GGG + chr4_1:77553209-77553228 Msa0574190:intron 50.0%
GGAGGGAGTAGTTATCAAGG+GGG + chr4_1:77553210-77553229 Msa0574190:intron 50.0%
GAGGGAGTAGTTATCAAGGG+GGG + chr4_1:77553211-77553230 Msa0574190:intron 50.0%
AGGGAGTAGTTATCAAGGGG+GGG + chr4_1:77553212-77553231 Msa0574190:intron 50.0%
GTTGCACAAACACGTGGATC+TGG - chr4_1:77553294-77553313 None:intergenic 50.0%
CCACAACTATTTCGGCGTCT+AGG - chr4_1:77553726-77553745 None:intergenic 50.0%
CCTAGACGCCGAAATAGTTG+TGG + chr4_1:77553723-77553742 Msa0574190:intron 50.0%
GTGAGCTATACAGGTCCATG+TGG + chr4_1:77554205-77554224 Msa0574190:intron 50.0%
GGTAATGCCCATTGCCCATT+AGG + chr4_1:77554226-77554245 Msa0574190:intron 50.0%
CCCATTGCCCATTAGGACTT+TGG + chr4_1:77554233-77554252 Msa0574190:intron 50.0%
! GCCAAAGTCCTAATGGGCAA+TGG - chr4_1:77554237-77554256 None:intergenic 50.0%
!!! TTTTGGAGCTTCCTCTGTGG+AGG + chr4_1:77554794-77554813 Msa0574190:intron 50.0%
GCAAGTGTAGCTATCACCTC+TGG + chr4_1:77555050-77555069 Msa0574190:intron 50.0%
!! TCAAGCGTCGATAGGATCTG+CGG - chr4_1:77555209-77555228 None:intergenic 50.0%
GCTTGATTCACATGTTCCGG+TGG + chr4_1:77555223-77555242 Msa0574190:CDS 50.0%
CTTATCCCCGTCGCTAATGC+CGG + chr4_1:77547480-77547499 Msa0574190:CDS 55.0%
ACGGAGGAGGAAGACGAAGA+AGG - chr4_1:77547528-77547547 None:intergenic 55.0%
TCCTCCTCCGTTCATCATGC+CGG + chr4_1:77547537-77547556 Msa0574190:CDS 55.0%
TGAATCCCTAACCTCACGGC+CGG - chr4_1:77547559-77547578 None:intergenic 55.0%
TAATTGCACGGGTGGGGTTG+TGG - chr4_1:77549083-77549102 None:intergenic 55.0%
CGCTGATCTAATTGCACGGG+TGG - chr4_1:77549091-77549110 None:intergenic 55.0%
AAGTCCTACCGTCTTCTGCC+AGG + chr4_1:77549167-77549186 Msa0574190:intron 55.0%
GAGGCCAAATTTGCAGCGAG+AGG + chr4_1:77549850-77549869 Msa0574190:intron 55.0%
TTGTTGTGGTGGCTGTGGTG+TGG + chr4_1:77549973-77549992 Msa0574190:intron 55.0%
TGTTGTGGTGGCTGTGGTGT+GGG + chr4_1:77549974-77549993 Msa0574190:intron 55.0%
GGGGTTGGAGGAAGTAACCA+AGG + chr4_1:77549994-77550013 Msa0574190:intron 55.0%
! GTTAGGGGGAGGAGCAGTTT+TGG + chr4_1:77550159-77550178 Msa0574190:intron 55.0%
!! GTTTTGGTAGATGGGGGGAG+AGG + chr4_1:77550175-77550194 Msa0574190:intron 55.0%
CAAACCATGAGGCACGGACA+TGG - chr4_1:77550640-77550659 None:intergenic 55.0%
TTATTGATCTTGGGGGGGGG+GGG - chr4_1:77551151-77551170 None:intergenic 55.0%
ATGGTTGGGTGCATCTGTCC+TGG + chr4_1:77551815-77551834 Msa0574190:CDS 55.0%
TGGTTGGGTGCATCTGTCCT+GGG + chr4_1:77551816-77551835 Msa0574190:CDS 55.0%
GTGCATCTGTCCTGGGACTT+GGG + chr4_1:77551823-77551842 Msa0574190:CDS 55.0%
TGCATCTGTCCTGGGACTTG+GGG + chr4_1:77551824-77551843 Msa0574190:CDS 55.0%
TAAACCACTCCCCAAGTCCC+AGG - chr4_1:77551836-77551855 None:intergenic 55.0%
! GGTGAATAAGTGGGGTGTCC+GGG + chr4_1:77551995-77552014 Msa0574190:intron 55.0%
! GTGAATAAGTGGGGTGTCCG+GGG + chr4_1:77551996-77552015 Msa0574190:intron 55.0%
CACCTCGTCTGTTGTCCTTC+AGG + chr4_1:77552250-77552269 Msa0574190:CDS 55.0%
!! AGCAGGTTGTCGGTTCGGAA+AGG - chr4_1:77552861-77552880 None:intergenic 55.0%
GGGTTACATGTAGGGACGGA+GGG - chr4_1:77552940-77552959 None:intergenic 55.0%
GAGTAGTATGGGATGCTCGG+TGG - chr4_1:77553261-77553280 None:intergenic 55.0%
GCACAAACACGTGGATCTGG+TGG - chr4_1:77553291-77553310 None:intergenic 55.0%
GGGCAATGGGCATTACCACA+TGG - chr4_1:77554223-77554242 None:intergenic 55.0%
TCCCCCTCTACTGTCGTCAG+CGG + chr4_1:77547441-77547460 Msa0574190:CDS 60.0%
TGCCGCTGACGACAGTAGAG+GGG - chr4_1:77547446-77547465 None:intergenic 60.0%
CTGCCGCTGACGACAGTAGA+GGG - chr4_1:77547447-77547466 None:intergenic 60.0%
TCTGCCGCTGACGACAGTAG+AGG - chr4_1:77547448-77547467 None:intergenic 60.0%
!! GGAAGCATTGGAGTGGTCGC+CGG - chr4_1:77547502-77547521 None:intergenic 60.0%
CTCACGGCCGGCATGATGAA+CGG - chr4_1:77547547-77547566 None:intergenic 60.0%
ATCATGCCGGCCGTGAGGTT+AGG + chr4_1:77547550-77547569 Msa0574190:intron 60.0%
TCATGCCGGCCGTGAGGTTA+GGG + chr4_1:77547551-77547570 Msa0574190:intron 60.0%
GTTGTGGTGGCTGTGGTGTG+GGG + chr4_1:77549975-77549994 Msa0574190:intron 60.0%
CTCTGACCACTCCTCCACCA+CGG - chr4_1:77550130-77550149 None:intergenic 60.0%
TATTGATCTTGGGGGGGGGG+GGG - chr4_1:77551150-77551169 None:intergenic 60.0%
GGTGCATCTGTCCTGGGACT+TGG + chr4_1:77551822-77551841 Msa0574190:CDS 60.0%
!! CACGGGACATCGGCTCTCAA+GGG - chr4_1:77552811-77552830 None:intergenic 60.0%
AAGGGCCAACCACGGGACAT+CGG - chr4_1:77552821-77552840 None:intergenic 60.0%
GGGGTTACATGTAGGGACGG+AGG - chr4_1:77552941-77552960 None:intergenic 60.0%
AACCCAGAGGGTGACACGGT+GGG - chr4_1:77553525-77553544 None:intergenic 60.0%
ACCGTGTCACCCTCTGGGTT+GGG + chr4_1:77553525-77553544 Msa0574190:intron 60.0%
ACCCAACCCAGAGGGTGACA+CGG - chr4_1:77553529-77553548 None:intergenic 60.0%
GCCGCTGACGACAGTAGAGG+GGG - chr4_1:77547445-77547464 None:intergenic 65.0%
TGGTCGCCGGCATTAGCGAC+GGG - chr4_1:77547489-77547508 None:intergenic 65.0%
GTGGTCGCCGGCATTAGCGA+CGG - chr4_1:77547490-77547509 None:intergenic 65.0%
GCCGGCATGATGAACGGAGG+AGG - chr4_1:77547541-77547560 None:intergenic 65.0%
ACGGCCGGCATGATGAACGG+AGG - chr4_1:77547544-77547563 None:intergenic 65.0%
CGTTCATCATGCCGGCCGTG+AGG + chr4_1:77547545-77547564 Msa0574190:CDS 65.0%
TTGCACGGGTGGGGTTGTGG+TGG - chr4_1:77549080-77549099 None:intergenic 65.0%
TGGTGGCTGTGGTGTGGGGT+TGG + chr4_1:77549979-77549998 Msa0574190:intron 65.0%
TGGCTGTGGTGTGGGGTTGG+AGG + chr4_1:77549982-77550001 Msa0574190:intron 65.0%
! CATGGCGAGATTGGTGGCCG+TGG + chr4_1:77550110-77550129 Msa0574190:intron 65.0%
! GAGATTGGTGGCCGTGGTGG+AGG + chr4_1:77550116-77550135 Msa0574190:intron 65.0%
ATTGATCTTGGGGGGGGGGG+GGG - chr4_1:77551149-77551168 None:intergenic 65.0%
CTGTCCTGGGACTTGGGGAG+TGG + chr4_1:77551829-77551848 Msa0574190:CDS 65.0%
GGTGTCCGGGGTTCAAACCC+CGG + chr4_1:77552008-77552027 Msa0574190:intron 65.0%
!! GGGACATCGGCTCTCAAGGG+TGG - chr4_1:77552808-77552827 None:intergenic 65.0%
!! CCACGGGACATCGGCTCTCA+AGG - chr4_1:77552812-77552831 None:intergenic 65.0%
CCTTGAGAGCCGATGTCCCG+TGG + chr4_1:77552809-77552828 Msa0574190:intron 65.0%
GAGAGCCGATGTCCCGTGGT+TGG + chr4_1:77552813-77552832 Msa0574190:intron 65.0%
CGGTGGGTGGTTGGGTGGAT+GGG - chr4_1:77553509-77553528 None:intergenic 65.0%
ACGGTGGGTGGTTGGGTGGA+TGG - chr4_1:77553510-77553529 None:intergenic 65.0%
TGACACGGTGGGTGGTTGGG+TGG - chr4_1:77553514-77553533 None:intergenic 65.0%
GGGTGACACGGTGGGTGGTT+GGG - chr4_1:77553517-77553536 None:intergenic 65.0%
AGGGTGACACGGTGGGTGGT+TGG - chr4_1:77553518-77553537 None:intergenic 65.0%
CACCCACCGTGTCACCCTCT+GGG + chr4_1:77553520-77553539 Msa0574190:intron 65.0%
CAACCCAGAGGGTGACACGG+TGG - chr4_1:77553526-77553545 None:intergenic 65.0%
CACCGTGTCACCCTCTGGGT+TGG + chr4_1:77553524-77553543 Msa0574190:intron 65.0%
GGTCGCCGGCATTAGCGACG+GGG - chr4_1:77547488-77547507 None:intergenic 70.0%
! GGCGAGATTGGTGGCCGTGG+TGG + chr4_1:77550113-77550132 Msa0574190:intron 70.0%
! TGGTGGCCGTGGTGGAGGAG+TGG + chr4_1:77550121-77550140 Msa0574190:intron 70.0%
TTGATCTTGGGGGGGGGGGG+GGG - chr4_1:77551148-77551167 None:intergenic 70.0%
AGGGGCCGGGGTTTGAACCC+CGG - chr4_1:77552016-77552035 None:intergenic 70.0%
CCAGAGGGTGACACGGTGGG+TGG - chr4_1:77553522-77553541 None:intergenic 70.0%
CCACCCACCGTGTCACCCTC+TGG + chr4_1:77553519-77553538 Msa0574190:intron 70.0%
TGATCTTGGGGGGGGGGGGG+GGG - chr4_1:77551147-77551166 None:intergenic 75.0%
! ATCTTGGGGGGGGGGGGGGG+GGG - chr4_1:77551145-77551164 None:intergenic 80.0%
! GATCTTGGGGGGGGGGGGGG+GGG - chr4_1:77551146-77551165 None:intergenic 80.0%
! TCTTGGGGGGGGGGGGGGGG+GGG - chr4_1:77551144-77551163 None:intergenic 85.0%
! TTGGGGGGGGGGGGGGGGGG+GGG - chr4_1:77551142-77551161 None:intergenic 90.0%
! CTTGGGGGGGGGGGGGGGGG+GGG - chr4_1:77551143-77551162 None:intergenic 90.0%
! TGGGGGGGGGGGGGGGGGGG+GGG - chr4_1:77551141-77551160 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 77547300 77555647 77547300 ID=Msa0574190;Name=Msa0574190
chr4_1 mRNA 77547300 77555647 77547300 ID=Msa0574190-mRNA-1;Parent=Msa0574190;Name=Msa0574190-mRNA-1;_AED=0.31;_eAED=0.31;_QI=105|0.66|0.71|1|0.66|0.71|7|376|249
chr4_1 exon 77547300 77547566 77547300 ID=Msa0574190-mRNA-1:exon:27355;Parent=Msa0574190-mRNA-1
chr4_1 exon 77548580 77548617 77548580 ID=Msa0574190-mRNA-1:exon:27356;Parent=Msa0574190-mRNA-1
chr4_1 exon 77550990 77551099 77550990 ID=Msa0574190-mRNA-1:exon:27357;Parent=Msa0574190-mRNA-1
chr4_1 exon 77551757 77551876 77551757 ID=Msa0574190-mRNA-1:exon:27358;Parent=Msa0574190-mRNA-1
chr4_1 exon 77552174 77552271 77552174 ID=Msa0574190-mRNA-1:exon:27359;Parent=Msa0574190-mRNA-1
chr4_1 exon 77554566 77554692 77554566 ID=Msa0574190-mRNA-1:exon:27360;Parent=Msa0574190-mRNA-1
chr4_1 exon 77555177 77555647 77555177 ID=Msa0574190-mRNA-1:exon:27361;Parent=Msa0574190-mRNA-1
chr4_1 five_prime_UTR 77547300 77547404 77547300 ID=Msa0574190-mRNA-1:five_prime_utr;Parent=Msa0574190-mRNA-1
chr4_1 CDS 77547405 77547566 77547405 ID=Msa0574190-mRNA-1:cds;Parent=Msa0574190-mRNA-1
chr4_1 CDS 77548580 77548617 77548580 ID=Msa0574190-mRNA-1:cds;Parent=Msa0574190-mRNA-1
chr4_1 CDS 77550990 77551099 77550990 ID=Msa0574190-mRNA-1:cds;Parent=Msa0574190-mRNA-1
chr4_1 CDS 77551757 77551876 77551757 ID=Msa0574190-mRNA-1:cds;Parent=Msa0574190-mRNA-1
chr4_1 CDS 77552174 77552271 77552174 ID=Msa0574190-mRNA-1:cds;Parent=Msa0574190-mRNA-1
chr4_1 CDS 77554566 77554692 77554566 ID=Msa0574190-mRNA-1:cds;Parent=Msa0574190-mRNA-1
chr4_1 CDS 77555177 77555271 77555177 ID=Msa0574190-mRNA-1:cds;Parent=Msa0574190-mRNA-1
chr4_1 three_prime_UTR 77555272 77555647 77555272 ID=Msa0574190-mRNA-1:three_prime_utr;Parent=Msa0574190-mRNA-1
Gene Sequence

>Msa0574190

ATGGTTCTTCCTCCTCAAGTTATGGTCGACGATAAATCCCCCTCTACTGTCGTCAGCGGCAGAGATCGAGAGCTTCTTATCCCCGTCGCTAATGCCGGCGACCACTCCAATGCTTCCAAACCTTCTTCGTCTTCCTCCTCCGTTCATCATGCCGGCCGTGAGACTTTTTCCAAAGTTGTTCAGAGCTGGGCATCAAAAAATGTCATTCTTTTTCCAATTGCAATCACCTTCTACATTACCTGGTGGTTCATTCATTTTGTGGATGGTTTTTTTTCTCCGATCTATGTTCATCTTGGAATCAATATCTTTGGTCTTGGATTCATAACTTCCATAACCTTCATCTTCTTGATTGGGATTTTCATGTCATCATGGTTGGGTGCATCTGTCCTGGGACTTGGGGAGTGGTTTATCAAGAGAATGCCTCTTGTTCATCAAAATTCACAAGCCTTCAAAGAAGTAGCCATCATTCGACATCCACGTGTGGGAGAATATGCATTGGGATTCATCACCTCGTCTGTTGTCCTTCAGACTTATTCTGGAGATGAGGAGTTATGCTGTGTCTATGTTCCCACAAACCATCTTTATATTGGTGATATATTTCTTGTCAACACCAAGGATGTCATTAGGCCAAACTTATCAGTACGGGAAGGAATTGAAATTGTCGTTTCTGGAGGCATGTCAATGCCGCAGATCCTATCGACGCTTGATTCACATGTTCCGGTGGAAATAAGTAGACCTGATAGAAGATGA
Protein sequence

>Msa0574190

MVLPPQVMVDDKSPSTVVSGRDRELLIPVANAGDHSNASKPSSSSSSVHHAGRETFSKVVQSWASKNVILFPIAITFYITWWFIHFVDGFFSPIYVHLGINIFGLGFITSITFIFLIGIFMSSWLGASVLGLGEWFIKRMPLVHQNSQAFKEVAIIRHPRVGEYALGFITSSVVLQTYSGDEELCCVYVPTNHLYIGDIFLVNTKDVIRPNLSVREGIEIVVSGGMSMPQILSTLDSHVPVEISRPDRR*