Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574750 | XP_003630918.2 | 96.207 | 290 | 10 | 1 | 4 | 292 | 2 | 291 | 0.0 | 568 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574750 | sp|Q9ZU94|PDLP6_ARATH | 58.451 | 284 | 111 | 4 | 14 | 292 | 7 | 288 | 1.70e-113 | 332 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574750 | I3T3Y9 | 96.207 | 290 | 10 | 1 | 4 | 292 | 2 | 291 | 0.0 | 568 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0137880 | Msa0574750 | 0.802938 | 4.423940e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574750 | MtrunA17_Chr8g0391511 | 96.207 | 290 | 10 | 1 | 4 | 292 | 2 | 291 | 0.0 | 568 |
| Msa0574750 | MtrunA17_Chr5g0434531 | 48.582 | 282 | 136 | 3 | 10 | 288 | 1 | 276 | 2.34e-89 | 267 |
| Msa0574750 | MtrunA17_Chr3g0110311 | 48.352 | 273 | 132 | 4 | 17 | 288 | 10 | 274 | 6.34e-86 | 258 |
| Msa0574750 | MtrunA17_Chr7g0230381 | 37.218 | 266 | 151 | 6 | 9 | 267 | 12 | 268 | 2.18e-56 | 182 |
| Msa0574750 | MtrunA17_Chr1g0168311 | 30.662 | 287 | 184 | 6 | 12 | 288 | 8 | 289 | 2.29e-35 | 129 |
| Msa0574750 | MtrunA17_Chr1g0186151 | 28.623 | 276 | 183 | 3 | 27 | 290 | 26 | 299 | 1.02e-29 | 115 |
| Msa0574750 | MtrunA17_Chr7g0262011 | 27.758 | 281 | 196 | 4 | 14 | 292 | 83 | 358 | 2.98e-28 | 111 |
| Msa0574750 | MtrunA17_Chr1g0190321 | 27.402 | 281 | 177 | 10 | 13 | 278 | 17 | 285 | 4.86e-23 | 96.3 |
| Msa0574750 | MtrunA17_Chr6g0475121 | 30.556 | 180 | 113 | 3 | 68 | 235 | 65 | 244 | 8.11e-18 | 83.6 |
| Msa0574750 | MtrunA17_Chr6g0475121 | 27.778 | 180 | 108 | 5 | 79 | 236 | 192 | 371 | 4.47e-13 | 69.3 |
| Msa0574750 | MtrunA17_Chr8g0354341 | 26.457 | 223 | 154 | 3 | 25 | 237 | 19 | 241 | 1.63e-17 | 80.5 |
| Msa0574750 | MtrunA17_Chr1g0205771 | 24.151 | 265 | 183 | 6 | 44 | 292 | 51 | 313 | 2.03e-17 | 82.4 |
| Msa0574750 | MtrunA17_Chr6g0475001 | 26.531 | 245 | 154 | 6 | 11 | 235 | 6 | 244 | 5.63e-17 | 80.9 |
| Msa0574750 | MtrunA17_Chr6g0475001 | 25.967 | 181 | 112 | 5 | 79 | 237 | 192 | 372 | 2.56e-12 | 67.0 |
| Msa0574750 | MtrunA17_Chr1g0206291 | 26.250 | 240 | 162 | 6 | 10 | 235 | 20 | 258 | 9.38e-17 | 80.1 |
| Msa0574750 | MtrunA17_Chr7g0226901 | 25.210 | 238 | 166 | 6 | 2 | 236 | 3 | 231 | 2.19e-16 | 77.4 |
| Msa0574750 | MtrunA17_Chr2g0323011 | 26.141 | 241 | 154 | 7 | 10 | 235 | 7 | 238 | 2.21e-16 | 77.0 |
| Msa0574750 | MtrunA17_Chr6g0474901 | 27.619 | 210 | 139 | 3 | 39 | 235 | 28 | 237 | 3.13e-16 | 79.0 |
| Msa0574750 | MtrunA17_Chr6g0474901 | 25.000 | 184 | 110 | 4 | 79 | 237 | 185 | 365 | 1.93e-11 | 64.7 |
| Msa0574750 | MtrunA17_Chr6g0474901 | 25.217 | 230 | 143 | 8 | 82 | 292 | 314 | 533 | 3.07e-11 | 63.9 |
| Msa0574750 | MtrunA17_Chr6g0475201 | 27.094 | 203 | 134 | 4 | 46 | 235 | 42 | 243 | 4.02e-16 | 78.6 |
| Msa0574750 | MtrunA17_Chr6g0475201 | 28.177 | 181 | 107 | 5 | 79 | 236 | 191 | 371 | 1.46e-13 | 70.9 |
| Msa0574750 | MtrunA17_Chr8g0354351 | 22.222 | 243 | 160 | 5 | 10 | 237 | 10 | 238 | 5.11e-16 | 78.2 |
| Msa0574750 | MtrunA17_Chr1g0206351 | 29.167 | 216 | 139 | 5 | 33 | 235 | 33 | 247 | 7.88e-16 | 77.8 |
| Msa0574750 | MtrunA17_Chr6g0474811 | 25.820 | 244 | 158 | 6 | 11 | 235 | 6 | 245 | 2.42e-15 | 76.3 |
| Msa0574750 | MtrunA17_Chr6g0474811 | 25.521 | 192 | 120 | 4 | 69 | 237 | 183 | 374 | 2.13e-13 | 70.5 |
| Msa0574750 | MtrunA17_Chr6g0474811 | 25.893 | 224 | 147 | 7 | 82 | 292 | 323 | 540 | 5.37e-11 | 63.2 |
| Msa0574750 | MtrunA17_Chr2g0322981 | 25.207 | 242 | 153 | 8 | 10 | 235 | 9 | 238 | 2.88e-15 | 73.9 |
| Msa0574750 | MtrunA17_Chr3g0081001 | 22.581 | 248 | 168 | 3 | 6 | 237 | 2 | 241 | 6.85e-15 | 74.7 |
| Msa0574750 | MtrunA17_Chr4g0058891 | 31.148 | 183 | 115 | 6 | 82 | 262 | 80 | 253 | 8.72e-15 | 74.3 |
| Msa0574750 | MtrunA17_Chr7g0234231 | 27.004 | 237 | 146 | 8 | 14 | 235 | 7 | 231 | 1.26e-14 | 72.0 |
| Msa0574750 | MtrunA17_Chr5g0394001 | 27.004 | 237 | 155 | 6 | 11 | 235 | 13 | 243 | 2.97e-14 | 72.8 |
| Msa0574750 | MtrunA17_Chr3g0109411 | 27.570 | 214 | 144 | 5 | 33 | 237 | 28 | 239 | 4.85e-14 | 72.4 |
| Msa0574750 | MtrunA17_Chr1g0206531 | 26.699 | 206 | 133 | 5 | 44 | 235 | 43 | 244 | 5.12e-14 | 72.0 |
| Msa0574750 | MtrunA17_Chr6g0474871 | 26.050 | 238 | 162 | 5 | 11 | 235 | 6 | 242 | 5.49e-14 | 72.4 |
| Msa0574750 | MtrunA17_Chr6g0474871 | 27.273 | 143 | 87 | 3 | 82 | 211 | 318 | 456 | 8.37e-11 | 62.8 |
| Msa0574750 | MtrunA17_Chr1g0206331 | 24.336 | 226 | 153 | 7 | 27 | 235 | 22 | 246 | 5.68e-14 | 72.0 |
| Msa0574750 | MtrunA17_Chr6g0474971 | 27.451 | 204 | 131 | 5 | 47 | 235 | 36 | 237 | 6.09e-14 | 70.9 |
| Msa0574750 | MtrunA17_Chr1g0206361 | 22.593 | 270 | 173 | 5 | 44 | 288 | 47 | 305 | 1.44e-13 | 70.9 |
| Msa0574750 | MtrunA17_Chr6g0474861 | 25.806 | 217 | 139 | 7 | 11 | 213 | 6 | 214 | 1.68e-13 | 70.5 |
| Msa0574750 | MtrunA17_Chr5g0428531 | 25.000 | 248 | 146 | 9 | 13 | 235 | 9 | 241 | 2.54e-13 | 68.9 |
| Msa0574750 | MtrunA17_Chr8g0347571 | 23.451 | 226 | 152 | 4 | 83 | 292 | 317 | 537 | 1.73e-12 | 67.8 |
| Msa0574750 | MtrunA17_Chr1g0154311 | 22.535 | 213 | 141 | 5 | 40 | 235 | 40 | 245 | 1.89e-12 | 67.4 |
| Msa0574750 | MtrunA17_Chr1g0206461 | 24.500 | 200 | 142 | 3 | 44 | 235 | 43 | 241 | 2.44e-12 | 67.0 |
| Msa0574750 | MtrunA17_Chr3g0119041 | 28.226 | 248 | 145 | 10 | 14 | 235 | 15 | 255 | 2.79e-12 | 67.0 |
| Msa0574750 | MtrunA17_Chr5g0428571 | 23.043 | 230 | 158 | 5 | 25 | 245 | 30 | 249 | 2.91e-12 | 66.6 |
| Msa0574750 | MtrunA17_Chr1g0206571 | 24.762 | 210 | 139 | 6 | 41 | 235 | 45 | 250 | 6.66e-12 | 65.1 |
| Msa0574750 | MtrunA17_Chr8g0354271 | 25.410 | 244 | 154 | 6 | 12 | 237 | 11 | 244 | 7.10e-12 | 65.9 |
| Msa0574750 | MtrunA17_Chr6g0475091 | 24.444 | 225 | 149 | 5 | 82 | 289 | 330 | 550 | 8.42e-12 | 65.5 |
| Msa0574750 | MtrunA17_Chr1g0206231 | 27.519 | 258 | 162 | 9 | 11 | 247 | 6 | 259 | 8.67e-12 | 65.5 |
| Msa0574750 | MtrunA17_Chr6g0475111 | 25.630 | 238 | 144 | 7 | 79 | 292 | 326 | 554 | 9.50e-12 | 65.5 |
| Msa0574750 | MtrunA17_Chr3g0081011 | 23.182 | 220 | 162 | 2 | 25 | 237 | 21 | 240 | 9.99e-12 | 65.5 |
| Msa0574750 | MtrunA17_Chr8g0354281 | 22.826 | 276 | 179 | 10 | 25 | 274 | 20 | 287 | 1.84e-11 | 64.3 |
| Msa0574750 | MtrunA17_Chr1g0154341 | 23.790 | 248 | 154 | 7 | 13 | 235 | 8 | 245 | 3.32e-11 | 62.8 |
| Msa0574750 | MtrunA17_Chr5g0428591 | 23.140 | 242 | 159 | 8 | 13 | 237 | 9 | 240 | 3.86e-11 | 62.4 |
| Msa0574750 | MtrunA17_Chr1g0206201 | 23.922 | 255 | 172 | 8 | 10 | 246 | 8 | 258 | 4.72e-11 | 62.0 |
| Msa0574750 | MtrunA17_Chr1g0154351 | 22.541 | 244 | 163 | 7 | 12 | 235 | 8 | 245 | 5.04e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574750 | AT2G01660.1 | 58.451 | 284 | 111 | 4 | 14 | 292 | 7 | 288 | 1.73e-114 | 332 |
| Msa0574750 | AT2G01660.3 | 58.156 | 282 | 111 | 4 | 14 | 290 | 7 | 286 | 6.71e-113 | 328 |
| Msa0574750 | AT2G01660.2 | 58.798 | 233 | 91 | 3 | 14 | 243 | 7 | 237 | 1.56e-93 | 277 |
| Msa0574750 | AT5G37660.1 | 54.325 | 289 | 121 | 6 | 7 | 292 | 8 | 288 | 7.83e-93 | 276 |
| Msa0574750 | AT5G37660.2 | 54.511 | 266 | 112 | 5 | 7 | 269 | 8 | 267 | 2.38e-92 | 276 |
| Msa0574750 | AT1G70690.1 | 46.392 | 291 | 142 | 6 | 8 | 287 | 4 | 291 | 7.16e-77 | 236 |
| Msa0574750 | AT3G60720.1 | 39.844 | 256 | 142 | 4 | 30 | 280 | 25 | 273 | 3.45e-57 | 185 |
| Msa0574750 | AT3G60720.3 | 39.844 | 256 | 142 | 4 | 30 | 280 | 25 | 273 | 3.67e-57 | 186 |
| Msa0574750 | AT3G60720.2 | 40.930 | 215 | 119 | 3 | 30 | 239 | 25 | 236 | 6.35e-48 | 160 |
| Msa0574750 | AT2G33330.1 | 29.010 | 293 | 191 | 5 | 12 | 288 | 9 | 300 | 3.54e-32 | 121 |
| Msa0574750 | AT1G04520.1 | 28.852 | 305 | 198 | 5 | 1 | 289 | 3 | 304 | 5.95e-31 | 118 |
| Msa0574750 | AT5G43980.1 | 28.520 | 277 | 176 | 7 | 30 | 288 | 24 | 296 | 3.72e-23 | 97.1 |
| Msa0574750 | AT1G63580.1 | 23.551 | 276 | 184 | 6 | 12 | 271 | 9 | 273 | 2.08e-18 | 83.6 |
| Msa0574750 | AT5G48540.1 | 28.431 | 204 | 130 | 4 | 45 | 235 | 35 | 235 | 5.37e-18 | 82.0 |
| Msa0574750 | AT5G41290.1 | 27.861 | 201 | 131 | 4 | 47 | 235 | 43 | 241 | 1.08e-16 | 79.0 |
| Msa0574750 | AT1G63590.1 | 25.100 | 251 | 164 | 6 | 1 | 235 | 1 | 243 | 1.18e-16 | 78.6 |
| Msa0574750 | AT1G63550.1 | 25.806 | 217 | 140 | 6 | 35 | 235 | 32 | 243 | 1.38e-16 | 79.0 |
| Msa0574750 | AT1G63600.1 | 25.463 | 216 | 138 | 5 | 39 | 235 | 40 | 251 | 1.52e-14 | 73.2 |
| Msa0574750 | AT1G61750.1 | 24.257 | 202 | 142 | 4 | 44 | 235 | 40 | 240 | 3.00e-14 | 72.4 |
| Msa0574750 | AT1G63570.3 | 28.708 | 209 | 135 | 5 | 39 | 235 | 33 | 239 | 5.37e-14 | 71.2 |
| Msa0574750 | AT1G63570.1 | 28.708 | 209 | 135 | 5 | 39 | 235 | 33 | 239 | 5.37e-14 | 71.2 |
| Msa0574750 | AT1G63570.2 | 28.708 | 209 | 135 | 5 | 39 | 235 | 86 | 292 | 9.69e-14 | 70.9 |
| Msa0574750 | AT5G41280.1 | 25.431 | 232 | 158 | 6 | 59 | 278 | 56 | 284 | 9.78e-14 | 70.5 |
| Msa0574750 | AT3G22060.1 | 25.620 | 242 | 159 | 7 | 10 | 235 | 7 | 243 | 1.50e-13 | 69.3 |
| Msa0574750 | AT3G04370.2 | 23.934 | 305 | 195 | 8 | 15 | 287 | 15 | 314 | 1.54e-13 | 70.1 |
| Msa0574750 | AT3G04370.1 | 23.856 | 306 | 195 | 8 | 15 | 287 | 15 | 315 | 1.86e-13 | 70.1 |
| Msa0574750 | AT3G21990.1 | 25.311 | 241 | 162 | 6 | 11 | 235 | 10 | 248 | 2.07e-13 | 68.9 |
| Msa0574750 | AT3G58310.1 | 27.126 | 247 | 149 | 9 | 7 | 235 | 15 | 248 | 8.39e-13 | 67.4 |
| Msa0574750 | AT5G41300.1 | 21.912 | 251 | 166 | 6 | 47 | 277 | 47 | 287 | 1.30e-12 | 67.0 |
| Msa0574750 | AT4G05200.1 | 24.473 | 237 | 159 | 4 | 11 | 235 | 14 | 242 | 1.39e-12 | 68.2 |
| Msa0574750 | AT4G05200.2 | 24.473 | 237 | 159 | 4 | 11 | 235 | 32 | 260 | 1.39e-12 | 68.2 |
| Msa0574750 | AT1G70530.1 | 28.634 | 227 | 139 | 10 | 83 | 292 | 75 | 295 | 7.97e-12 | 65.9 |
| Msa0574750 | AT1G70530.3 | 28.634 | 227 | 139 | 10 | 83 | 292 | 75 | 295 | 9.45e-12 | 65.5 |
| Msa0574750 | AT1G70530.2 | 28.634 | 227 | 139 | 10 | 83 | 292 | 75 | 295 | 9.46e-12 | 65.9 |
| Msa0574750 | AT4G23310.1 | 31.288 | 163 | 103 | 4 | 82 | 236 | 79 | 240 | 9.52e-12 | 65.9 |
| Msa0574750 | AT4G23310.2 | 31.288 | 163 | 103 | 4 | 82 | 236 | 79 | 240 | 1.02e-11 | 65.9 |
| Msa0574750 | AT4G28670.1 | 29.630 | 162 | 102 | 4 | 82 | 236 | 77 | 233 | 9.30e-11 | 62.8 |
Find 88 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTTGGGGTGATATGTATT+TGG | 0.196751 | 4_1:-78461912 | Msa0574750:CDS |
| CTGGTAAATTATTTGTCTTT+TGG | 0.254313 | 4_1:-78459658 | Msa0574750:three_prime_UTR |
| TGATCAATACCCATTATTAA+AGG | 0.289069 | 4_1:+78459387 | None:intergenic |
| CAGGGTGTGGCGCAGTGTAC+GGG | 0.291220 | 4_1:-78462010 | Msa0574750:CDS |
| AAGACACTAGCCATACTAAT+TGG | 0.326123 | 4_1:-78459913 | Msa0574750:CDS |
| TCACTGGCAATCTTTATAGA+AGG | 0.327745 | 4_1:+78459580 | None:intergenic |
| TCAGGGTGTGGCGCAGTGTA+CGG | 0.328071 | 4_1:-78462011 | Msa0574750:CDS |
| ATGTTATAGCCTTTAATAAT+GGG | 0.334716 | 4_1:-78459396 | Msa0574750:three_prime_UTR |
| TATGTTATAGCCTTTAATAA+TGG | 0.346442 | 4_1:-78459397 | Msa0574750:three_prime_UTR |
| TTACAGAATGAGTTACAATA+AGG | 0.346940 | 4_1:-78459507 | Msa0574750:three_prime_UTR |
| TACAACAATTTCACAGTTCC+CGG | 0.356273 | 4_1:-78462367 | Msa0574750:CDS |
| CTTCTGATGCGTTTACTAGA+AGG | 0.360930 | 4_1:-78462108 | Msa0574750:CDS |
| CTGAGTGTGGGGATTCTACT+TGG | 0.388204 | 4_1:-78461928 | Msa0574750:CDS |
| AGCAATGAGTCCAATTAGTA+TGG | 0.405107 | 4_1:+78459903 | None:intergenic |
| ATACTAATTGGACTCATTGC+TGG | 0.415948 | 4_1:-78459901 | Msa0574750:CDS |
| GTGAACATTGATCATTGTTA+AGG | 0.420980 | 4_1:+78462296 | None:intergenic |
| GATACAAACTCTTTCATCTT+CGG | 0.427387 | 4_1:-78462487 | Msa0574750:CDS |
| AGTTTCCGACTCCGCAGAGC+CGG | 0.442024 | 4_1:+78462348 | None:intergenic |
| TTTGAGCTCTAGTAAGTGTC+AGG | 0.454235 | 4_1:-78461984 | Msa0574750:CDS |
| TTCACAAAGCTTGGACAAGA+AGG | 0.456635 | 4_1:+78459852 | None:intergenic |
| TTTATAGAAGGGAATTGTGC+TGG | 0.461762 | 4_1:+78459592 | None:intergenic |
| CTTATTTACAGTCGTCCGAT+GGG | 0.472707 | 4_1:-78462072 | Msa0574750:CDS |
| AAGAAATGTGGACCGTCGAT+TGG | 0.474510 | 4_1:-78462136 | Msa0574750:CDS |
| CTGTTCTCGTAGGCGGAACC+TGG | 0.474749 | 4_1:+78462439 | None:intergenic |
| ATAATTTACCAGAGAAAAGC+AGG | 0.475620 | 4_1:+78459669 | None:intergenic |
| TATATTATATATACCTTCAC+TGG | 0.477869 | 4_1:+78459564 | None:intergenic |
| AGTTTGTATCAGAGATTGAT+GGG | 0.484752 | 4_1:+78462500 | None:intergenic |
| GAAATTGTTGTAGTTTGAAA+AGG | 0.487310 | 4_1:+78462378 | None:intergenic |
| ACTTATTTACAGTCGTCCGA+TGG | 0.491110 | 4_1:-78462073 | Msa0574750:CDS |
| GAGTTTGTATCAGAGATTGA+TGG | 0.491221 | 4_1:+78462499 | None:intergenic |
| ATTATTAAAGGCTATAACAT+AGG | 0.494608 | 4_1:+78459399 | None:intergenic |
| AGGGTGTGGCGCAGTGTACG+GGG | 0.495239 | 4_1:-78462009 | Msa0574750:CDS |
| AGAAATGTGGACCGTCGATT+GGG | 0.495463 | 4_1:-78462135 | Msa0574750:CDS |
| GGTCACCACGGCACTGAGAA+AGG | 0.496220 | 4_1:+78462317 | None:intergenic |
| ATTGGACTCATTGCTGGTGT+TGG | 0.497608 | 4_1:-78459895 | Msa0574750:CDS |
| AGTTCCCGGCTCTGCGGAGT+CGG | 0.500493 | 4_1:-78462353 | Msa0574750:CDS |
| AGAGATTGATGGGGTTGGAA+TGG | 0.516490 | 4_1:+78462510 | None:intergenic |
| GCACGTGCGGTGAGTCAACT+TGG | 0.519399 | 4_1:-78462265 | Msa0574750:CDS |
| GTATCAGAGATTGATGGGGT+TGG | 0.519983 | 4_1:+78462505 | None:intergenic |
| TTCTGATGCGTTTACTAGAA+GGG | 0.528269 | 4_1:-78462107 | Msa0574750:CDS |
| CACTGGCAATCTTTATAGAA+GGG | 0.532095 | 4_1:+78459581 | None:intergenic |
| GTTTCCGACTCCGCAGAGCC+GGG | 0.536781 | 4_1:+78462349 | None:intergenic |
| CACTCGCGTGGTAGTAATAA+CGG | 0.542277 | 4_1:-78461854 | Msa0574750:intron |
| GACAAAGTAAATAAAGAGAG+TGG | 0.542876 | 4_1:+78459468 | None:intergenic |
| TGAGTGTGGGGATTCTACTT+GGG | 0.543469 | 4_1:-78461927 | Msa0574750:CDS |
| CTTAAAGAAGAATTAACGTA+AGG | 0.547337 | 4_1:+78462676 | None:intergenic |
| TGCTCACTATTTATACACAT+TGG | 0.550950 | 4_1:+78459443 | None:intergenic |
| ACGCGAGTGATCTCCACCTT+CGG | 0.553618 | 4_1:+78461868 | None:intergenic |
| ACAAACTCTTTCATCTTCGG+TGG | 0.557441 | 4_1:-78462484 | Msa0574750:CDS |
| AAAGGCTGCTGAGTTGACTA+AGG | 0.558557 | 4_1:+78462396 | None:intergenic |
| TCACTATTTATACACATTGG+TGG | 0.559790 | 4_1:+78459446 | None:intergenic |
| ACACTCTGTTTCGCTACCTA+CGG | 0.562979 | 4_1:-78462241 | Msa0574750:CDS |
| AACGGTTGAAAACTGAGTGT+GGG | 0.566457 | 4_1:-78461940 | Msa0574750:CDS |
| TTCACGTTGCGTGGCACGTG+CGG | 0.568332 | 4_1:-78462278 | Msa0574750:CDS |
| TCTCGTTTCAAATACTCACC+AGG | 0.573214 | 4_1:-78462457 | Msa0574750:CDS |
| ATATAGATAGAAAGATCTTG+TGG | 0.579589 | 4_1:-78459546 | Msa0574750:three_prime_UTR |
| TGATCAATGTTCACGTTGCG+TGG | 0.583539 | 4_1:-78462287 | Msa0574750:CDS |
| TGAGTTCACGCTGTTCTCGT+AGG | 0.584005 | 4_1:+78462429 | None:intergenic |
| CAACGGTTGAAAACTGAGTG+TGG | 0.585316 | 4_1:-78461941 | Msa0574750:CDS |
| TGCTACGTGCGTTATTCCGA+AGG | 0.586039 | 4_1:-78461884 | Msa0574750:CDS |
| GTGTTTCTGAAGCGATCCAA+CGG | 0.587182 | 4_1:-78461958 | Msa0574750:CDS |
| GAGCTGCAACGCGCCACCGT+AGG | 0.590384 | 4_1:+78462225 | None:intergenic |
| GTTCACGCTGTTCTCGTAGG+CGG | 0.592613 | 4_1:+78462432 | None:intergenic |
| CTCAAACACAAACACAAACA+TGG | 0.597209 | 4_1:-78462566 | Msa0574750:CDS |
| GGGTGTGGCGCAGTGTACGG+GGG | 0.600102 | 4_1:-78462008 | Msa0574750:CDS |
| TCTATAAAGATTGCCAGTGA+AGG | 0.605592 | 4_1:-78459577 | Msa0574750:three_prime_UTR |
| GGTGGCGCGTTGCAGCTCGA+AGG | 0.606353 | 4_1:-78462220 | Msa0574750:CDS |
| TTATTTACAGTCGTCCGATG+GGG | 0.609695 | 4_1:-78462071 | Msa0574750:CDS |
| ACTGAGGTGGTCAAGAAATG+TGG | 0.610552 | 4_1:-78462148 | Msa0574750:CDS |
| GAGTGTGGGGATTCTACTTG+GGG | 0.611415 | 4_1:-78461926 | Msa0574750:CDS |
| CTGAGTTGACTAAGGAAGTG+AGG | 0.611457 | 4_1:+78462404 | None:intergenic |
| TCAGAAGTCAACCCAATCGA+CGG | 0.643899 | 4_1:+78462124 | None:intergenic |
| GCGGAGTCGGAAACTGTGTA+CGG | 0.645237 | 4_1:-78462340 | Msa0574750:CDS |
| TATTTACAGTCGTCCGATGG+GGG | 0.645496 | 4_1:-78462070 | Msa0574750:CDS |
| ACGGTTGAAAACTGAGTGTG+GGG | 0.652974 | 4_1:-78461939 | Msa0574750:CDS |
| ATTGTGCTGGAAACTTACAA+AGG | 0.657768 | 4_1:+78459605 | None:intergenic |
| CTCTGTTTCGCTACCTACGG+TGG | 0.659191 | 4_1:-78462238 | Msa0574750:CDS |
| TACGGCCTTTCTCAGTGCCG+TGG | 0.660453 | 4_1:-78462322 | Msa0574750:CDS |
| GTTTGTATCAGAGATTGATG+GGG | 0.662190 | 4_1:+78462501 | None:intergenic |
| TTTCACAGTTCCCGGCTCTG+CGG | 0.678988 | 4_1:-78462359 | Msa0574750:CDS |
| TACGTGCGTTATTCCGAAGG+TGG | 0.683424 | 4_1:-78461881 | Msa0574750:CDS |
| GAAGGTGGAGATCACTCGCG+TGG | 0.691186 | 4_1:-78461866 | Msa0574750:CDS |
| TAATTTACCAGAGAAAAGCA+GGG | 0.696659 | 4_1:+78459670 | None:intergenic |
| TGGGGTGCAAGACAAGACTG+AGG | 0.700663 | 4_1:-78462164 | Msa0574750:CDS |
| GGTGCAAGACAAGACTGAGG+TGG | 0.720155 | 4_1:-78462161 | Msa0574750:CDS |
| GATCATTGTTAAGGTCACCA+CGG | 0.720890 | 4_1:+78462305 | None:intergenic |
| GGTAAATAGAGAATGTTACG+TGG | 0.736690 | 4_1:-78459717 | Msa0574750:exon |
| AAGCTTTGTGAAAAGCAGAG+AGG | 0.747914 | 4_1:-78459841 | Msa0574750:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATTTTTATTTTTTTATT+TGG | + | chr4_1:78461644-78461663 | None:intergenic | 0.0% |
| !! | AAATATAGAAAAAATCTTAT+TGG | - | chr4_1:78460852-78460871 | Msa0574750:intron | 10.0% |
| !! | CATTAAATAATTTATGTATT+TGG | - | chr4_1:78461289-78461308 | Msa0574750:intron | 10.0% |
| !! | GTATATGTTAAAACTTAATA+CGG | + | chr4_1:78461226-78461245 | None:intergenic | 15.0% |
| !!! | ATAATTTATGTATTTGGTTT+AGG | - | chr4_1:78461295-78461314 | Msa0574750:intron | 15.0% |
| !!! | TACTTAAAATGAATGAATTT+TGG | + | chr4_1:78461494-78461513 | None:intergenic | 15.0% |
| !!! | TAAGTAATTGTTTTTCTAAA+AGG | - | chr4_1:78461508-78461527 | Msa0574750:intron | 15.0% |
| !!! | AAGTAATTGTTTTTCTAAAA+GGG | - | chr4_1:78461509-78461528 | Msa0574750:intron | 15.0% |
| !! | AAAAAGAGAATATATGATTG+TGG | + | chr4_1:78459299-78459318 | None:intergenic | 20.0% |
| !! | CTGATCAAACTTTATATTAT+TGG | + | chr4_1:78460256-78460275 | None:intergenic | 20.0% |
| !! | AAATATTGAATTCACAGTTA+TGG | - | chr4_1:78460312-78460331 | Msa0574750:intron | 20.0% |
| !! | GTGCTTCAAATAAAATTATT+TGG | - | chr4_1:78460403-78460422 | Msa0574750:intron | 20.0% |
| !! | TTAATTAGGGGTAAAAAAAA+GGG | + | chr4_1:78460995-78461014 | None:intergenic | 20.0% |
| !! | TTTAATTAGGGGTAAAAAAA+AGG | + | chr4_1:78460996-78461015 | None:intergenic | 20.0% |
| !! | TGGTCTAACAATTTAATTAA+GGG | - | chr4_1:78461017-78461036 | Msa0574750:intron | 20.0% |
| !!! | TTTTCATTAGTATTTGGATT+TGG | - | chr4_1:78461118-78461137 | Msa0574750:intron | 20.0% |
| !! | TTAAAACTTAATACGGATAA+TGG | + | chr4_1:78461219-78461238 | None:intergenic | 20.0% |
| !!! | GTAAATTGTTTCTTGTAAAT+AGG | + | chr4_1:78461259-78461278 | None:intergenic | 20.0% |
| !! | TAGAGATTAAAGAATACAAA+AGG | + | chr4_1:78461570-78461589 | None:intergenic | 20.0% |
| !!! | AATATTTTACATTAGCTTTG+TGG | - | chr4_1:78461658-78461677 | Msa0574750:intron | 20.0% |
| !! | ATTTGAAAATTATTGAGCTT+GGG | + | chr4_1:78461846-78461865 | None:intergenic | 20.0% |
| !! | TATTTGAAAATTATTGAGCT+TGG | + | chr4_1:78461847-78461866 | None:intergenic | 20.0% |
| !! | GTATAAGACAAAATGAAATT+CGG | + | chr4_1:78461967-78461986 | None:intergenic | 20.0% |
| !! | AAAGGATTCAATACAAAAAA+GGG | + | chr4_1:78462396-78462415 | None:intergenic | 20.0% |
| !! | TATATTATATATACCTTCAC+TGG | + | chr4_1:78462455-78462474 | None:intergenic | 20.0% |
| !! | ATTATTAAAGGCTATAACAT+AGG | + | chr4_1:78462620-78462639 | None:intergenic | 20.0% |
| !! | TATGTTATAGCCTTTAATAA+TGG | - | chr4_1:78462619-78462638 | Msa0574750:five_prime_UTR | 20.0% |
| !! | ATGTTATAGCCTTTAATAAT+GGG | - | chr4_1:78462620-78462639 | Msa0574750:five_prime_UTR | 20.0% |
| !!! | TCTTAATCTAACTTTTTGAA+TGG | + | chr4_1:78462720-78462739 | None:intergenic | 20.0% |
| ! | CTTAAAGAAGAATTAACGTA+AGG | + | chr4_1:78459343-78459362 | None:intergenic | 25.0% |
| ! | GAAATTGTTGTAGTTTGAAA+AGG | + | chr4_1:78459641-78459660 | None:intergenic | 25.0% |
| !!! | TACGATAATCTTACGTTTTT+TGG | - | chr4_1:78459832-78459851 | Msa0574750:intron | 25.0% |
| !!! | ACGATAATCTTACGTTTTTT+GGG | - | chr4_1:78459833-78459852 | Msa0574750:intron | 25.0% |
| !!! | TAAGAATTTTAGGACAACTT+CGG | - | chr4_1:78459972-78459991 | Msa0574750:intron | 25.0% |
| ! | AACTTAACAATGTTAAAGAG+AGG | + | chr4_1:78460205-78460224 | None:intergenic | 25.0% |
| ! | GATTGTCTATCTCAAATATT+TGG | - | chr4_1:78460343-78460362 | Msa0574750:intron | 25.0% |
| !!! | TGTTTTTGTCAAAATCACAT+TGG | + | chr4_1:78460547-78460566 | None:intergenic | 25.0% |
| !!! | GTCCAACAGTTTTTTTTTTT+GGG | - | chr4_1:78460789-78460808 | Msa0574750:intron | 25.0% |
| ! | TTCCCAAAAAAAAAAACTGT+TGG | + | chr4_1:78460794-78460813 | None:intergenic | 25.0% |
| !!! | AATGCACAAAATTTTAGAGA+AGG | - | chr4_1:78460917-78460936 | Msa0574750:intron | 25.0% |
| !!! | TAGAGAAGGTTTTTTCTTTT+AGG | - | chr4_1:78460931-78460950 | Msa0574750:intron | 25.0% |
| !!! | TTTTTTACCCCTAATTAAAC+TGG | - | chr4_1:78460997-78461016 | Msa0574750:intron | 25.0% |
| ! | TTGTTAGACCAGTTTAATTA+GGG | + | chr4_1:78461008-78461027 | None:intergenic | 25.0% |
| ! | ATTGTTAGACCAGTTTAATT+AGG | + | chr4_1:78461009-78461028 | None:intergenic | 25.0% |
| ! | CTGGTCTAACAATTTAATTA+AGG | - | chr4_1:78461016-78461035 | Msa0574750:intron | 25.0% |
| !!! | TTTTACGAGTTTTTTGTTGT+TGG | - | chr4_1:78461078-78461097 | Msa0574750:intron | 25.0% |
| ! | CTATTCTAATGTGTATGTAT+TGG | + | chr4_1:78461195-78461214 | None:intergenic | 25.0% |
| ! | ATATGCTATATGATCTATGA+TGG | - | chr4_1:78461406-78461425 | Msa0574750:intron | 25.0% |
| ! | ATTAAAGAATACAAAAGGCA+TGG | + | chr4_1:78461565-78461584 | None:intergenic | 25.0% |
| ! | TTTCTTCATTAATTCAAAGC+TGG | + | chr4_1:78461707-78461726 | None:intergenic | 25.0% |
| ! | AAATACTAGGTATCATTTCA+TGG | + | chr4_1:78461755-78461774 | None:intergenic | 25.0% |
| ! | TAGGAGAAATGATAAATACT+AGG | + | chr4_1:78461768-78461787 | None:intergenic | 25.0% |
| !!! | CTTGAAATGCTGTTTAATTT+TGG | - | chr4_1:78462027-78462046 | Msa0574750:CDS | 25.0% |
| !! | CTGGTAAATTATTTGTCTTT+TGG | - | chr4_1:78462358-78462377 | Msa0574750:CDS | 25.0% |
| !! | GTAAATTATTTGTCTTTTGG+TGG | - | chr4_1:78462361-78462380 | Msa0574750:CDS | 25.0% |
| ! | CAAAGGATTCAATACAAAAA+AGG | + | chr4_1:78462397-78462416 | None:intergenic | 25.0% |
| ! | ATATAGATAGAAAGATCTTG+TGG | - | chr4_1:78462470-78462489 | Msa0574750:CDS | 25.0% |
| ! | TTACAGAATGAGTTACAATA+AGG | - | chr4_1:78462509-78462528 | Msa0574750:CDS | 25.0% |
| ! | TGATCAATACCCATTATTAA+AGG | + | chr4_1:78462632-78462651 | None:intergenic | 25.0% |
| AGTTTGTATCAGAGATTGAT+GGG | + | chr4_1:78459519-78459538 | None:intergenic | 30.0% | |
| GATACAAACTCTTTCATCTT+CGG | - | chr4_1:78459529-78459548 | Msa0574750:three_prime_UTR | 30.0% | |
| GTGAACATTGATCATTGTTA+AGG | + | chr4_1:78459723-78459742 | None:intergenic | 30.0% | |
| !!! | CGATAATCTTACGTTTTTTG+GGG | - | chr4_1:78459834-78459853 | Msa0574750:intron | 30.0% |
| AAAATTCTTATAACCCCCAT+CGG | + | chr4_1:78459962-78459981 | None:intergenic | 30.0% | |
| ! | ATGGGGGTTATAAGAATTTT+AGG | - | chr4_1:78459962-78459981 | Msa0574750:intron | 30.0% |
| TTAACAATGTTAAAGAGAGG+AGG | + | chr4_1:78460202-78460221 | None:intergenic | 30.0% | |
| TTGAAGAGAACATTAACAAG+TGG | - | chr4_1:78460454-78460473 | Msa0574750:intron | 30.0% | |
| TATCATACAAAAGCAAAACG+AGG | + | chr4_1:78460618-78460637 | None:intergenic | 30.0% | |
| !!! | GGTCCAACAGTTTTTTTTTT+TGG | - | chr4_1:78460788-78460807 | Msa0574750:intron | 30.0% |
| TGTTAGACCAGTTTAATTAG+GGG | + | chr4_1:78461007-78461026 | None:intergenic | 30.0% | |
| ! | TGTTGTTGGTAAATACTTGT+TGG | - | chr4_1:78461092-78461111 | Msa0574750:intron | 30.0% |
| ! | GTTGTTGGTAAATACTTGTT+GGG | - | chr4_1:78461093-78461112 | Msa0574750:intron | 30.0% |
| ! | TGGGTGTTTTCATTAGTATT+TGG | - | chr4_1:78461112-78461131 | Msa0574750:intron | 30.0% |
| ! | TTGTTTCTTGTAAATAGGAC+CGG | + | chr4_1:78461254-78461273 | None:intergenic | 30.0% |
| GTCAACTTTCTCTTGTAAAT+AGG | - | chr4_1:78461358-78461377 | Msa0574750:intron | 30.0% | |
| ATTATACATAATACTCCCTC+CGG | + | chr4_1:78461385-78461404 | None:intergenic | 30.0% | |
| ! | TTATTCTTTTTGCTCAGCAA+AGG | - | chr4_1:78461600-78461619 | Msa0574750:intron | 30.0% |
| !! | TTTACATTAGCTTTGTGGAA+AGG | - | chr4_1:78461663-78461682 | Msa0574750:intron | 30.0% |
| !! | TCTGCTTTTCAGACATTATT+AGG | + | chr4_1:78461787-78461806 | None:intergenic | 30.0% |
| GAAATTCGGTTCAACTTATA+AGG | + | chr4_1:78461953-78461972 | None:intergenic | 30.0% | |
| ! | CTTTTTGAACAATGTTATGC+AGG | - | chr4_1:78462275-78462294 | Msa0574750:CDS | 30.0% |
| TAATTTACCAGAGAAAAGCA+GGG | + | chr4_1:78462349-78462368 | None:intergenic | 30.0% | |
| ATAATTTACCAGAGAAAAGC+AGG | + | chr4_1:78462350-78462369 | None:intergenic | 30.0% | |
| CAATACAAAAAAGGGAAAGA+TGG | + | chr4_1:78462388-78462407 | None:intergenic | 30.0% | |
| GACAAAGTAAATAAAGAGAG+TGG | + | chr4_1:78462551-78462570 | None:intergenic | 30.0% | |
| TCACTATTTATACACATTGG+TGG | + | chr4_1:78462573-78462592 | None:intergenic | 30.0% | |
| TGCTCACTATTTATACACAT+TGG | + | chr4_1:78462576-78462595 | None:intergenic | 30.0% | |
| CTCAAACACAAACACAAACA+TGG | - | chr4_1:78459450-78459469 | Msa0574750:three_prime_UTR | 35.0% | |
| GTTTGTATCAGAGATTGATG+GGG | + | chr4_1:78459518-78459537 | None:intergenic | 35.0% | |
| GAGTTTGTATCAGAGATTGA+TGG | + | chr4_1:78459520-78459539 | None:intergenic | 35.0% | |
| TACAACAATTTCACAGTTCC+CGG | - | chr4_1:78459649-78459668 | Msa0574750:three_prime_UTR | 35.0% | |
| TTCTGATGCGTTTACTAGAA+GGG | - | chr4_1:78459909-78459928 | Msa0574750:CDS | 35.0% | |
| TACTTGGGGTGATATGTATT+TGG | - | chr4_1:78460104-78460123 | Msa0574750:intron | 35.0% | |
| TTCGTGCATGTTTGAATTGA+TGG | - | chr4_1:78460490-78460509 | Msa0574750:intron | 35.0% | |
| ! | AATGTTAACTTTTGCCCTCA+AGG | - | chr4_1:78460813-78460832 | Msa0574750:intron | 35.0% |
| !! | ATCATTAACTTGTGCCTTGA+GGG | + | chr4_1:78460830-78460849 | None:intergenic | 35.0% |
| !! | AATCATTAACTTGTGCCTTG+AGG | + | chr4_1:78460831-78460850 | None:intergenic | 35.0% |
| TTTCTTAACATGTGCCCTAA+GGG | - | chr4_1:78460954-78460973 | Msa0574750:intron | 35.0% | |
| !! | AGTATTAACTTGTGCCCTTA+GGG | + | chr4_1:78460971-78460990 | None:intergenic | 35.0% |
| !! | TAGTATTAACTTGTGCCCTT+AGG | + | chr4_1:78460972-78460991 | None:intergenic | 35.0% |
| AGTATTATCCGTGTAGTTCA+TGG | - | chr4_1:78461162-78461181 | Msa0574750:intron | 35.0% | |
| GTATTATCCGTGTAGTTCAT+GGG | - | chr4_1:78461163-78461182 | Msa0574750:intron | 35.0% | |
| GAAATTTCCCATGAACTACA+CGG | + | chr4_1:78461173-78461192 | None:intergenic | 35.0% | |
| !! | GTTTTAACATATACTCCCTC+CGG | - | chr4_1:78461232-78461251 | Msa0574750:intron | 35.0% |
| CTTTCTCTTGTAAATAGGAC+CGG | - | chr4_1:78461363-78461382 | Msa0574750:intron | 35.0% | |
| ! | AAAGAATACAAAAGGCATGG+TGG | + | chr4_1:78461562-78461581 | None:intergenic | 35.0% |
| CATGGATCGTTATTGTTCTT+TGG | + | chr4_1:78461737-78461756 | None:intergenic | 35.0% | |
| AAGACACTAGCCATACTAAT+TGG | - | chr4_1:78462103-78462122 | Msa0574750:CDS | 35.0% | |
| AGCAATGAGTCCAATTAGTA+TGG | + | chr4_1:78462116-78462135 | None:intergenic | 35.0% | |
| ATACTAATTGGACTCATTGC+TGG | - | chr4_1:78462115-78462134 | Msa0574750:CDS | 35.0% | |
| TTTGAACAATGTTATGCAGG+TGG | - | chr4_1:78462278-78462297 | Msa0574750:CDS | 35.0% | |
| GGTAAATAGAGAATGTTACG+TGG | - | chr4_1:78462299-78462318 | Msa0574750:CDS | 35.0% | |
| ATTGTGCTGGAAACTTACAA+AGG | + | chr4_1:78462414-78462433 | None:intergenic | 35.0% | |
| TTTATAGAAGGGAATTGTGC+TGG | + | chr4_1:78462427-78462446 | None:intergenic | 35.0% | |
| CACTGGCAATCTTTATAGAA+GGG | + | chr4_1:78462438-78462457 | None:intergenic | 35.0% | |
| TCACTGGCAATCTTTATAGA+AGG | + | chr4_1:78462439-78462458 | None:intergenic | 35.0% | |
| TCTATAAAGATTGCCAGTGA+AGG | - | chr4_1:78462439-78462458 | Msa0574750:CDS | 35.0% | |
| ACAAACTCTTTCATCTTCGG+TGG | - | chr4_1:78459532-78459551 | Msa0574750:three_prime_UTR | 40.0% | |
| TCTCGTTTCAAATACTCACC+AGG | - | chr4_1:78459559-78459578 | Msa0574750:three_prime_UTR | 40.0% | |
| GATCATTGTTAAGGTCACCA+CGG | + | chr4_1:78459714-78459733 | None:intergenic | 40.0% | |
| CTTCTGATGCGTTTACTAGA+AGG | - | chr4_1:78459908-78459927 | Msa0574750:CDS | 40.0% | |
| ACTTATTTACAGTCGTCCGA+TGG | - | chr4_1:78459943-78459962 | Msa0574750:CDS | 40.0% | |
| CTTATTTACAGTCGTCCGAT+GGG | - | chr4_1:78459944-78459963 | Msa0574750:CDS | 40.0% | |
| TTATTTACAGTCGTCCGATG+GGG | - | chr4_1:78459945-78459964 | Msa0574750:CDS | 40.0% | |
| ! | TTTGAGCTCTAGTAAGTGTC+AGG | - | chr4_1:78460032-78460051 | Msa0574750:intron | 40.0% |
| AACGGTTGAAAACTGAGTGT+GGG | - | chr4_1:78460076-78460095 | Msa0574750:intron | 40.0% | |
| TGGGTGTGGAAAACTAGAAT+TGG | - | chr4_1:78460767-78460786 | Msa0574750:intron | 40.0% | |
| GTTTCTTAACATGTGCCCTA+AGG | - | chr4_1:78460953-78460972 | Msa0574750:intron | 40.0% | |
| TTCTTGTAAATAGGACCGGA+GGG | + | chr4_1:78461250-78461269 | None:intergenic | 40.0% | |
| TTTCTTGTAAATAGGACCGG+AGG | + | chr4_1:78461251-78461270 | None:intergenic | 40.0% | |
| ! | TTCTTTTTGCTCAGCAAAGG+AGG | - | chr4_1:78461603-78461622 | Msa0574750:intron | 40.0% |
| TTCACAAAGCTTGGACAAGA+AGG | + | chr4_1:78462167-78462186 | None:intergenic | 40.0% | |
| !! | TCTCTGCTTTTCACAAAGCT+TGG | + | chr4_1:78462176-78462195 | None:intergenic | 40.0% |
| ! | AAGCTTTGTGAAAAGCAGAG+AGG | - | chr4_1:78462175-78462194 | Msa0574750:CDS | 40.0% |
| TTGTGAAAAGCAGAGAGGTA+TGG | - | chr4_1:78462180-78462199 | Msa0574750:CDS | 40.0% | |
| AGAGATTGATGGGGTTGGAA+TGG | + | chr4_1:78459509-78459528 | None:intergenic | 45.0% | |
| GTATCAGAGATTGATGGGGT+TGG | + | chr4_1:78459514-78459533 | None:intergenic | 45.0% | |
| ! | CTGAGTTGACTAAGGAAGTG+AGG | + | chr4_1:78459615-78459634 | None:intergenic | 45.0% |
| ! | AAAGGCTGCTGAGTTGACTA+AGG | + | chr4_1:78459623-78459642 | None:intergenic | 45.0% |
| TGATCAATGTTCACGTTGCG+TGG | - | chr4_1:78459729-78459748 | Msa0574750:intron | 45.0% | |
| ACACTCTGTTTCGCTACCTA+CGG | - | chr4_1:78459775-78459794 | Msa0574750:intron | 45.0% | |
| ACTGAGGTGGTCAAGAAATG+TGG | - | chr4_1:78459868-78459887 | Msa0574750:CDS | 45.0% | |
| AAGAAATGTGGACCGTCGAT+TGG | - | chr4_1:78459880-78459899 | Msa0574750:CDS | 45.0% | |
| ! | AGAAATGTGGACCGTCGATT+GGG | - | chr4_1:78459881-78459900 | Msa0574750:CDS | 45.0% |
| TCAGAAGTCAACCCAATCGA+CGG | + | chr4_1:78459895-78459914 | None:intergenic | 45.0% | |
| TATTTACAGTCGTCCGATGG+GGG | - | chr4_1:78459946-78459965 | Msa0574750:CDS | 45.0% | |
| !!! | TTTTAGGACAACTTCGGCTG+AGG | - | chr4_1:78459978-78459997 | Msa0574750:intron | 45.0% |
| ! | AACTTCGGCTGAGGATTTTC+AGG | - | chr4_1:78459987-78460006 | Msa0574750:intron | 45.0% |
| ! | ACTTCGGCTGAGGATTTTCA+GGG | - | chr4_1:78459988-78460007 | Msa0574750:intron | 45.0% |
| !! | GTGTTTCTGAAGCGATCCAA+CGG | - | chr4_1:78460058-78460077 | Msa0574750:intron | 45.0% |
| ! | CACACTCAGTTTTCAACCGT+TGG | + | chr4_1:78460077-78460096 | None:intergenic | 45.0% |
| CAACGGTTGAAAACTGAGTG+TGG | - | chr4_1:78460075-78460094 | Msa0574750:intron | 45.0% | |
| ACGGTTGAAAACTGAGTGTG+GGG | - | chr4_1:78460077-78460096 | Msa0574750:intron | 45.0% | |
| TGAGTGTGGGGATTCTACTT+GGG | - | chr4_1:78460089-78460108 | Msa0574750:intron | 45.0% | |
| CACTCGCGTGGTAGTAATAA+CGG | - | chr4_1:78460162-78460181 | Msa0574750:intron | 45.0% | |
| TCTCTTGTAAATAGGACCGG+AGG | - | chr4_1:78461366-78461385 | Msa0574750:intron | 45.0% | |
| CTCTTGTAAATAGGACCGGA+GGG | - | chr4_1:78461367-78461386 | Msa0574750:intron | 45.0% | |
| ATTGGACTCATTGCTGGTGT+TGG | - | chr4_1:78462121-78462140 | Msa0574750:CDS | 45.0% | |
| !! | CATTTGTCCCTGCTTTTCTC+TGG | - | chr4_1:78462339-78462358 | Msa0574750:CDS | 45.0% |
| TGAGTTCACGCTGTTCTCGT+AGG | + | chr4_1:78459590-78459609 | None:intergenic | 50.0% | |
| CTGAGTGTGGGGATTCTACT+TGG | - | chr4_1:78460088-78460107 | Msa0574750:intron | 50.0% | |
| GAGTGTGGGGATTCTACTTG+GGG | - | chr4_1:78460090-78460109 | Msa0574750:intron | 50.0% | |
| TGCTACGTGCGTTATTCCGA+AGG | - | chr4_1:78460132-78460151 | Msa0574750:intron | 50.0% | |
| TACGTGCGTTATTCCGAAGG+TGG | - | chr4_1:78460135-78460154 | Msa0574750:intron | 50.0% | |
| AAGCTGTTGCTCTTCCCATG+TGG | - | chr4_1:78460730-78460749 | Msa0574750:intron | 50.0% | |
| TTGCTCTTCCCATGTGGAGT+GGG | - | chr4_1:78460736-78460755 | Msa0574750:intron | 50.0% | |
| GTTCACGCTGTTCTCGTAGG+CGG | + | chr4_1:78459587-78459606 | None:intergenic | 55.0% | |
| TTTCACAGTTCCCGGCTCTG+CGG | - | chr4_1:78459657-78459676 | Msa0574750:three_prime_UTR | 55.0% | |
| GCGGAGTCGGAAACTGTGTA+CGG | - | chr4_1:78459676-78459695 | Msa0574750:three_prime_UTR | 55.0% | |
| CTCTGTTTCGCTACCTACGG+TGG | - | chr4_1:78459778-78459797 | Msa0574750:intron | 55.0% | |
| TGGGGTGCAAGACAAGACTG+AGG | - | chr4_1:78459852-78459871 | Msa0574750:CDS | 55.0% | |
| GGTGCAAGACAAGACTGAGG+TGG | - | chr4_1:78459855-78459874 | Msa0574750:CDS | 55.0% | |
| !! | GGCTGAGGATTTTCAGGGTG+TGG | - | chr4_1:78459993-78460012 | Msa0574750:intron | 55.0% |
| ACGCGAGTGATCTCCACCTT+CGG | + | chr4_1:78460151-78460170 | None:intergenic | 55.0% | |
| GTTGCTCTTCCCATGTGGAG+TGG | - | chr4_1:78460735-78460754 | Msa0574750:intron | 55.0% | |
| CTTCCCATGTGGAGTGGGTA+TGG | - | chr4_1:78460741-78460760 | Msa0574750:intron | 55.0% | |
| CCTCCATACCCACTCCACAT+GGG | + | chr4_1:78460747-78460766 | None:intergenic | 55.0% | |
| ACCTCCATACCCACTCCACA+TGG | + | chr4_1:78460748-78460767 | None:intergenic | 55.0% | |
| ATGTGGAGTGGGTATGGAGG+TGG | - | chr4_1:78460747-78460766 | Msa0574750:intron | 55.0% | |
| TGTGGAGTGGGTATGGAGGT+GGG | - | chr4_1:78460748-78460767 | Msa0574750:intron | 55.0% | |
| CTGTTCTCGTAGGCGGAACC+TGG | + | chr4_1:78459580-78459599 | None:intergenic | 60.0% | |
| AGTTTCCGACTCCGCAGAGC+CGG | + | chr4_1:78459671-78459690 | None:intergenic | 60.0% | |
| TACGGCCTTTCTCAGTGCCG+TGG | - | chr4_1:78459694-78459713 | Msa0574750:three_prime_UTR | 60.0% | |
| ! | GGTCACCACGGCACTGAGAA+AGG | + | chr4_1:78459702-78459721 | None:intergenic | 60.0% |
| TTCACGTTGCGTGGCACGTG+CGG | - | chr4_1:78459738-78459757 | Msa0574750:intron | 60.0% | |
| GCACGTGCGGTGAGTCAACT+TGG | - | chr4_1:78459751-78459770 | Msa0574750:intron | 60.0% | |
| TCAGGGTGTGGCGCAGTGTA+CGG | - | chr4_1:78460005-78460024 | Msa0574750:intron | 60.0% | |
| GAAGGTGGAGATCACTCGCG+TGG | - | chr4_1:78460150-78460169 | Msa0574750:intron | 60.0% | |
| CCCATGTGGAGTGGGTATGG+AGG | - | chr4_1:78460744-78460763 | Msa0574750:intron | 60.0% | |
| AGTGGGTATGGAGGTGGGTG+TGG | - | chr4_1:78460753-78460772 | Msa0574750:intron | 60.0% | |
| AGTTCCCGGCTCTGCGGAGT+CGG | - | chr4_1:78459663-78459682 | Msa0574750:three_prime_UTR | 65.0% | |
| GTTTCCGACTCCGCAGAGCC+GGG | + | chr4_1:78459670-78459689 | None:intergenic | 65.0% | |
| CAGGGTGTGGCGCAGTGTAC+GGG | - | chr4_1:78460006-78460025 | Msa0574750:intron | 65.0% | |
| AGGGTGTGGCGCAGTGTACG+GGG | - | chr4_1:78460007-78460026 | Msa0574750:intron | 65.0% | |
| GAGCTGCAACGCGCCACCGT+AGG | + | chr4_1:78459794-78459813 | None:intergenic | 70.0% | |
| GGTGGCGCGTTGCAGCTCGA+AGG | - | chr4_1:78459796-78459815 | Msa0574750:intron | 70.0% | |
| GGGTGTGGCGCAGTGTACGG+GGG | - | chr4_1:78460008-78460027 | Msa0574750:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 78459266 | 78462772 | 78459266 | ID=Msa0574750;Name=Msa0574750 |
| chr4_1 | mRNA | 78459266 | 78462772 | 78459266 | ID=Msa0574750-mRNA-1;Parent=Msa0574750;Name=Msa0574750-mRNA-1;_AED=0.00;_eAED=0.00;_QI=176|1|1|1|1|1|3|465|292 |
| chr4_1 | exon | 78459266 | 78459741 | 78459266 | ID=Msa0574750-mRNA-1:exon:27813;Parent=Msa0574750-mRNA-1 |
| chr4_1 | exon | 78459842 | 78459967 | 78459842 | ID=Msa0574750-mRNA-1:exon:27812;Parent=Msa0574750-mRNA-1 |
| chr4_1 | exon | 78461855 | 78462772 | 78461855 | ID=Msa0574750-mRNA-1:exon:27811;Parent=Msa0574750-mRNA-1 |
| chr4_1 | five_prime_UTR | 78462597 | 78462772 | 78462597 | ID=Msa0574750-mRNA-1:five_prime_utr;Parent=Msa0574750-mRNA-1 |
| chr4_1 | CDS | 78461855 | 78462596 | 78461855 | ID=Msa0574750-mRNA-1:cds;Parent=Msa0574750-mRNA-1 |
| chr4_1 | CDS | 78459842 | 78459967 | 78459842 | ID=Msa0574750-mRNA-1:cds;Parent=Msa0574750-mRNA-1 |
| chr4_1 | CDS | 78459731 | 78459741 | 78459731 | ID=Msa0574750-mRNA-1:cds;Parent=Msa0574750-mRNA-1 |
| chr4_1 | three_prime_UTR | 78459266 | 78459730 | 78459266 | ID=Msa0574750-mRNA-1:three_prime_utr;Parent=Msa0574750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
